Query 022762
Match_columns 292
No_of_seqs 320 out of 2040
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0691 Molecular chaperone (D 99.9 1.6E-28 3.6E-33 227.3 7.4 265 4-287 3-284 (296)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1.7E-22 3.7E-27 191.7 7.1 74 3-81 1-74 (371)
3 KOG0713 Molecular chaperone (D 99.9 1.8E-22 3.9E-27 187.5 7.1 70 4-78 14-83 (336)
4 PRK14288 chaperone protein Dna 99.8 2.9E-19 6.3E-24 171.7 7.3 69 5-78 2-70 (369)
5 PRK14279 chaperone protein Dna 99.7 1.4E-18 3E-23 168.3 7.2 71 3-78 6-76 (392)
6 KOG0716 Molecular chaperone (D 99.7 1.8E-18 3.8E-23 156.6 6.5 70 4-78 29-98 (279)
7 PRK14296 chaperone protein Dna 99.7 2.3E-18 5.1E-23 165.6 6.9 68 5-78 3-70 (372)
8 KOG0712 Molecular chaperone (D 99.7 3.1E-18 6.8E-23 160.7 7.1 67 4-78 2-68 (337)
9 PRK14286 chaperone protein Dna 99.7 4E-18 8.6E-23 164.1 7.3 69 5-78 3-71 (372)
10 PRK14277 chaperone protein Dna 99.7 1.6E-17 3.6E-22 160.5 7.5 70 4-78 3-72 (386)
11 PRK14285 chaperone protein Dna 99.7 1.5E-17 3.2E-22 159.7 7.1 69 5-78 2-70 (365)
12 PF00226 DnaJ: DnaJ domain; I 99.7 2E-17 4.2E-22 120.0 5.7 63 7-74 1-64 (64)
13 PRK14295 chaperone protein Dna 99.7 2.4E-17 5.2E-22 159.5 7.3 68 4-76 7-74 (389)
14 PRK14282 chaperone protein Dna 99.7 2.3E-17 5.1E-22 158.6 7.1 69 5-78 3-72 (369)
15 PRK14294 chaperone protein Dna 99.7 2.8E-17 6E-22 157.9 7.4 70 4-78 2-71 (366)
16 PRK14301 chaperone protein Dna 99.7 2.4E-17 5.3E-22 158.6 6.8 69 5-78 3-71 (373)
17 PRK14297 chaperone protein Dna 99.7 2.7E-17 5.9E-22 158.7 6.8 69 5-78 3-71 (380)
18 PRK14287 chaperone protein Dna 99.7 4.3E-17 9.3E-22 156.8 7.4 68 5-78 3-70 (371)
19 PRK14283 chaperone protein Dna 99.7 4.2E-17 9.1E-22 157.3 7.2 69 4-78 3-71 (378)
20 PRK14284 chaperone protein Dna 99.7 4.2E-17 9.1E-22 157.9 7.0 68 6-78 1-68 (391)
21 PRK14276 chaperone protein Dna 99.7 4.3E-17 9.3E-22 157.3 6.9 68 5-78 3-70 (380)
22 PRK10767 chaperone protein Dna 99.7 5.2E-17 1.1E-21 156.3 7.2 70 4-78 2-71 (371)
23 PRK14299 chaperone protein Dna 99.7 5.6E-17 1.2E-21 151.3 7.1 68 5-78 3-70 (291)
24 PTZ00037 DnaJ_C chaperone prot 99.7 4.1E-17 9E-22 159.1 6.5 66 4-78 26-91 (421)
25 PRK14278 chaperone protein Dna 99.7 5.4E-17 1.2E-21 156.5 6.9 68 5-78 2-69 (378)
26 KOG0718 Molecular chaperone (D 99.7 2.5E-17 5.4E-22 158.1 4.4 72 2-78 5-79 (546)
27 PRK14291 chaperone protein Dna 99.7 5.8E-17 1.3E-21 156.5 7.0 68 5-78 2-69 (382)
28 KOG0717 Molecular chaperone (D 99.7 6.2E-17 1.4E-21 155.3 6.5 71 3-78 5-76 (508)
29 PRK14281 chaperone protein Dna 99.7 7.2E-17 1.6E-21 156.6 6.9 69 5-78 2-70 (397)
30 PRK14298 chaperone protein Dna 99.7 9.3E-17 2E-21 154.8 6.5 68 5-78 4-71 (377)
31 PRK14280 chaperone protein Dna 99.7 1.1E-16 2.4E-21 154.2 7.0 68 5-78 3-70 (376)
32 PRK14289 chaperone protein Dna 99.7 1.7E-16 3.7E-21 153.5 7.4 70 4-78 3-72 (386)
33 PRK14290 chaperone protein Dna 99.6 3.4E-16 7.5E-21 150.3 6.5 68 6-78 3-71 (365)
34 TIGR02349 DnaJ_bact chaperone 99.6 5.7E-16 1.2E-20 148.2 6.5 66 7-78 1-66 (354)
35 KOG0715 Molecular chaperone (D 99.6 7.8E-16 1.7E-20 143.3 7.1 70 5-80 42-111 (288)
36 PRK14300 chaperone protein Dna 99.6 7.2E-16 1.6E-20 148.4 6.6 67 6-78 3-69 (372)
37 PTZ00341 Ring-infected erythro 99.6 8.2E-16 1.8E-20 158.8 7.1 70 3-78 570-639 (1136)
38 smart00271 DnaJ DnaJ molecular 99.6 1.4E-15 3E-20 108.6 6.2 58 6-68 1-59 (60)
39 PRK10266 curved DNA-binding pr 99.6 9.9E-16 2.1E-20 143.9 7.0 67 5-77 3-69 (306)
40 KOG0719 Molecular chaperone (D 99.6 7.5E-16 1.6E-20 136.8 5.2 70 4-78 12-83 (264)
41 PRK14292 chaperone protein Dna 99.6 1.1E-15 2.3E-20 147.2 6.5 67 6-78 2-68 (371)
42 PRK14293 chaperone protein Dna 99.6 1.3E-15 2.9E-20 146.7 6.9 68 5-78 2-69 (374)
43 cd06257 DnaJ DnaJ domain or J- 99.6 3.1E-15 6.7E-20 104.8 6.2 55 7-66 1-55 (55)
44 COG2214 CbpA DnaJ-class molecu 99.6 5.1E-15 1.1E-19 128.9 6.7 72 1-77 1-73 (237)
45 PRK05014 hscB co-chaperone Hsc 99.5 2.7E-14 5.8E-19 123.7 10.3 96 6-106 1-101 (171)
46 KOG0721 Molecular chaperone (D 99.5 1.4E-14 3E-19 127.6 6.7 69 5-78 98-166 (230)
47 PRK00294 hscB co-chaperone Hsc 99.5 1.4E-13 3E-18 119.3 10.7 97 4-106 2-103 (173)
48 PRK03578 hscB co-chaperone Hsc 99.5 5.4E-14 1.2E-18 122.2 7.6 100 2-106 2-106 (176)
49 KOG1150 Predicted molecular ch 99.5 3.6E-13 7.7E-18 117.3 12.6 71 4-79 51-122 (250)
50 PRK01356 hscB co-chaperone Hsc 99.5 3E-13 6.4E-18 116.6 10.7 97 6-106 2-101 (166)
51 TIGR03835 termin_org_DnaJ term 99.4 1.1E-13 2.5E-18 140.4 6.9 67 6-78 2-68 (871)
52 PHA03102 Small T antigen; Revi 99.4 1.7E-13 3.7E-18 116.2 4.1 64 6-78 5-70 (153)
53 KOG0720 Molecular chaperone (D 99.4 9.6E-13 2.1E-17 126.7 9.4 70 4-79 233-302 (490)
54 KOG0722 Molecular chaperone (D 99.3 8.5E-13 1.8E-17 118.8 3.8 71 5-81 32-102 (329)
55 KOG0624 dsRNA-activated protei 99.2 4.9E-12 1.1E-16 118.8 4.4 69 4-77 392-463 (504)
56 KOG0714 Molecular chaperone (D 99.1 2.4E-11 5.2E-16 110.7 3.8 69 5-78 2-71 (306)
57 KOG0550 Molecular chaperone (D 99.1 3.2E-11 6.9E-16 115.4 4.1 68 5-77 372-440 (486)
58 PRK09430 djlA Dna-J like membr 99.1 5.9E-11 1.3E-15 109.6 5.3 56 6-66 200-262 (267)
59 PTZ00100 DnaJ chaperone protei 99.1 7.4E-11 1.6E-15 95.5 4.6 52 5-65 64-115 (116)
60 PRK01773 hscB co-chaperone Hsc 99.1 1.3E-09 2.8E-14 94.6 11.7 97 6-106 2-103 (173)
61 PHA02624 large T antigen; Prov 99.0 3.6E-10 7.7E-15 113.8 5.4 59 6-73 11-71 (647)
62 TIGR00714 hscB Fe-S protein as 99.0 4.2E-09 9.1E-14 90.1 10.9 83 22-106 2-89 (157)
63 COG5407 SEC63 Preprotein trans 98.9 6.5E-10 1.4E-14 107.1 4.3 67 5-76 97-168 (610)
64 COG5269 ZUO1 Ribosome-associat 98.9 8.2E-10 1.8E-14 100.5 4.0 73 2-76 39-113 (379)
65 PF13893 RRM_5: RNA recognitio 98.9 3.2E-09 6.9E-14 74.6 5.9 54 186-240 1-56 (56)
66 KOG0122 Translation initiation 98.7 2.7E-08 5.8E-13 89.4 7.6 72 169-242 191-268 (270)
67 PLN03134 glycine-rich RNA-bind 98.7 6.4E-08 1.4E-12 81.6 8.8 67 176-242 41-113 (144)
68 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.6 2E-07 4.3E-12 88.2 8.7 69 174-242 274-348 (352)
69 PLN03120 nucleic acid binding 98.5 1.2E-06 2.6E-11 80.3 12.8 68 175-242 10-79 (260)
70 PF00076 RRM_1: RNA recognitio 98.5 3.1E-07 6.6E-12 65.9 6.5 53 177-229 6-61 (70)
71 TIGR01659 sex-lethal sex-letha 98.5 5.4E-07 1.2E-11 86.3 9.3 68 175-242 199-274 (346)
72 TIGR01659 sex-lethal sex-letha 98.5 7.9E-07 1.7E-11 85.2 9.8 66 177-242 115-186 (346)
73 KOG0114 Predicted RNA-binding 98.5 5.1E-07 1.1E-11 71.7 6.9 65 177-241 26-93 (124)
74 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.4 7.8E-07 1.7E-11 84.1 8.5 67 176-242 10-82 (352)
75 smart00360 RRM RNA recognition 98.4 1.7E-06 3.8E-11 60.6 7.0 50 179-228 6-59 (71)
76 KOG4206 Spliceosomal protein s 98.3 8.9E-07 1.9E-11 78.8 6.4 66 177-242 17-89 (221)
77 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.3 2.2E-06 4.8E-11 85.4 9.6 73 170-242 97-173 (481)
78 KOG0144 RNA-binding protein CU 98.3 8.3E-07 1.8E-11 85.4 5.5 66 178-243 133-206 (510)
79 PLN03121 nucleic acid binding 98.3 3.2E-06 6.9E-11 76.5 8.8 65 177-241 13-79 (243)
80 TIGR01645 half-pint poly-U bin 98.2 5.8E-06 1.3E-10 84.3 10.2 64 178-241 213-282 (612)
81 KOG1789 Endocytosis protein RM 98.2 1.3E-06 2.9E-11 91.5 5.6 61 1-65 1276-1336(2235)
82 PF14259 RRM_6: RNA recognitio 98.2 3.4E-06 7.4E-11 61.2 6.2 51 178-228 7-60 (70)
83 KOG0149 Predicted RNA-binding 98.2 1.7E-06 3.6E-11 77.6 5.1 48 179-226 22-73 (247)
84 KOG4207 Predicted splicing fac 98.2 2.3E-06 5E-11 75.5 5.8 72 169-240 13-90 (256)
85 smart00361 RRM_1 RNA recogniti 98.2 3.2E-06 7E-11 62.2 5.8 48 183-230 2-60 (70)
86 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.2 4.9E-06 1.1E-10 82.9 8.2 64 177-242 10-77 (481)
87 TIGR01628 PABP-1234 polyadenyl 98.2 6.5E-06 1.4E-10 83.2 9.0 67 176-242 292-363 (562)
88 KOG0107 Alternative splicing f 98.2 4.6E-06 9.9E-11 71.9 6.7 66 175-241 16-83 (195)
89 TIGR01628 PABP-1234 polyadenyl 98.2 4.5E-06 9.8E-11 84.3 7.8 65 177-241 8-78 (562)
90 smart00362 RRM_2 RNA recogniti 98.2 7.2E-06 1.6E-10 57.7 6.6 51 178-228 8-60 (72)
91 TIGR01645 half-pint poly-U bin 98.2 1.1E-05 2.4E-10 82.3 10.3 64 177-240 115-184 (612)
92 cd00590 RRM RRM (RNA recogniti 98.1 1.4E-05 3E-10 56.5 7.9 61 178-238 8-73 (74)
93 KOG0125 Ataxin 2-binding prote 98.1 6.8E-06 1.5E-10 76.9 6.7 77 164-242 93-173 (376)
94 KOG0130 RNA-binding protein RB 98.1 5.1E-06 1.1E-10 69.0 5.1 64 177-240 80-149 (170)
95 TIGR01622 SF-CC1 splicing fact 98.0 1.4E-05 3.1E-10 78.3 8.1 66 176-241 193-264 (457)
96 TIGR01622 SF-CC1 splicing fact 98.0 1.6E-05 3.4E-10 78.1 8.3 66 176-241 96-166 (457)
97 KOG0105 Alternative splicing f 98.0 9.6E-06 2.1E-10 70.6 5.7 72 170-241 7-81 (241)
98 KOG0148 Apoptosis-promoting RN 98.0 1E-05 2.2E-10 74.1 5.9 63 178-242 173-237 (321)
99 KOG0113 U1 small nuclear ribon 98.0 1.2E-05 2.5E-10 74.5 6.3 63 176-238 108-176 (335)
100 TIGR01648 hnRNP-R-Q heterogene 98.0 2E-05 4.4E-10 80.0 8.2 63 177-243 241-307 (578)
101 TIGR01642 U2AF_lg U2 snRNP aux 98.0 2.5E-05 5.4E-10 77.6 8.5 65 177-241 303-373 (509)
102 PF15023 DUF4523: Protein of u 97.9 4.2E-05 9E-10 64.1 7.8 77 165-244 84-163 (166)
103 KOG0568 Molecular chaperone (D 97.9 7.6E-06 1.6E-10 73.4 3.5 56 6-67 47-103 (342)
104 COG0724 RNA-binding proteins ( 97.9 3.9E-05 8.4E-10 67.2 7.1 65 177-241 123-193 (306)
105 KOG0121 Nuclear cap-binding pr 97.8 4.5E-05 9.8E-10 62.8 6.1 64 179-242 46-115 (153)
106 KOG0111 Cyclophilin-type pepti 97.8 1.8E-05 4E-10 70.5 3.5 65 179-243 20-90 (298)
107 PLN03213 repressor of silencin 97.8 9.2E-05 2E-09 72.7 8.5 73 170-242 11-87 (759)
108 KOG0117 Heterogeneous nuclear 97.8 6.6E-05 1.4E-09 72.8 7.3 74 166-243 255-331 (506)
109 KOG3192 Mitochondrial J-type c 97.8 0.0002 4.4E-09 60.7 9.4 132 4-142 6-142 (168)
110 TIGR01648 hnRNP-R-Q heterogene 97.8 7.1E-05 1.5E-09 76.1 7.9 64 176-239 65-134 (578)
111 KOG0127 Nucleolar protein fibr 97.7 7.5E-05 1.6E-09 74.0 6.5 63 180-242 128-195 (678)
112 TIGR01642 U2AF_lg U2 snRNP aux 97.7 7.6E-05 1.6E-09 74.2 6.5 58 184-241 434-500 (509)
113 KOG0145 RNA-binding protein EL 97.7 0.00016 3.4E-09 66.1 7.7 66 177-242 49-120 (360)
114 KOG0148 Apoptosis-promoting RN 97.7 0.00012 2.5E-09 67.2 6.9 64 178-241 71-140 (321)
115 KOG0123 Polyadenylate-binding 97.5 0.00021 4.4E-09 69.2 7.1 72 168-240 65-150 (369)
116 KOG0144 RNA-binding protein CU 97.5 0.00021 4.6E-09 69.1 6.2 73 169-241 34-115 (510)
117 KOG0147 Transcriptional coacti 97.4 0.00043 9.2E-09 68.7 8.1 66 177-242 286-357 (549)
118 KOG0108 mRNA cleavage and poly 97.4 0.00037 7.9E-09 68.7 7.3 72 171-242 20-97 (435)
119 KOG0146 RNA-binding protein ET 97.4 0.00028 6.1E-09 64.7 5.9 53 179-231 29-84 (371)
120 KOG0145 RNA-binding protein EL 97.4 0.0006 1.3E-08 62.4 7.5 62 179-240 288-355 (360)
121 KOG0117 Heterogeneous nuclear 97.4 0.00042 9.1E-09 67.4 6.7 63 177-239 91-160 (506)
122 KOG0153 Predicted RNA-binding 97.3 0.00089 1.9E-08 63.3 7.6 62 179-242 238-302 (377)
123 KOG0132 RNA polymerase II C-te 97.2 0.00065 1.4E-08 69.9 6.8 63 177-241 429-493 (894)
124 KOG0126 Predicted RNA-binding 97.2 3.3E-05 7.1E-10 67.1 -2.2 64 178-241 44-113 (219)
125 KOG4208 Nucleolar RNA-binding 97.2 0.00083 1.8E-08 59.4 6.2 67 177-243 57-130 (214)
126 KOG0124 Polypyrimidine tract-b 97.2 0.00046 1E-08 65.7 4.6 50 180-229 124-177 (544)
127 KOG0131 Splicing factor 3b, su 97.1 0.00067 1.5E-08 59.0 4.9 65 177-241 17-87 (203)
128 KOG0123 Polyadenylate-binding 97.1 0.0012 2.5E-08 64.0 6.5 64 179-242 8-74 (369)
129 KOG0415 Predicted peptidyl pro 97.0 0.0016 3.5E-08 61.9 6.5 49 177-225 247-299 (479)
130 KOG0723 Molecular chaperone (D 97.0 0.0015 3.2E-08 52.1 5.2 48 11-67 61-108 (112)
131 KOG1190 Polypyrimidine tract-b 96.8 0.0043 9.2E-08 60.0 7.6 66 177-243 306-373 (492)
132 KOG0533 RRM motif-containing p 96.7 0.0084 1.8E-07 54.8 8.3 75 169-243 83-162 (243)
133 KOG0110 RNA-binding protein (R 96.6 0.0048 1E-07 63.1 7.0 65 177-241 523-596 (725)
134 KOG0131 Splicing factor 3b, su 96.6 0.004 8.7E-08 54.3 5.1 66 176-241 103-175 (203)
135 KOG0431 Auxilin-like protein a 96.5 0.003 6.6E-08 62.7 4.5 42 23-64 400-448 (453)
136 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0074 1.6E-07 42.2 4.6 39 184-224 15-53 (53)
137 KOG0127 Nucleolar protein fibr 96.2 0.0064 1.4E-07 60.7 5.2 66 177-242 13-84 (678)
138 KOG0124 Polypyrimidine tract-b 96.2 0.011 2.3E-07 56.6 6.4 63 176-238 217-285 (544)
139 KOG0110 RNA-binding protein (R 96.2 0.0045 9.8E-08 63.3 3.8 65 178-242 622-692 (725)
140 KOG1456 Heterogeneous nuclear 96.1 0.026 5.7E-07 54.2 8.1 75 168-243 121-199 (494)
141 PF08777 RRM_3: RNA binding mo 96.1 0.022 4.7E-07 45.5 6.6 54 171-226 3-56 (105)
142 KOG0109 RNA-binding protein LA 96.0 0.014 2.9E-07 54.4 5.6 61 177-241 10-72 (346)
143 KOG4661 Hsp27-ERE-TATA-binding 96.0 0.014 3E-07 58.6 6.0 60 181-240 417-482 (940)
144 KOG0146 RNA-binding protein ET 95.9 0.012 2.6E-07 54.2 4.8 59 180-238 296-360 (371)
145 KOG2314 Translation initiation 95.7 0.015 3.2E-07 58.4 5.0 50 181-230 76-128 (698)
146 KOG4205 RNA-binding protein mu 95.7 0.006 1.3E-07 57.7 2.1 46 181-226 18-67 (311)
147 KOG4660 Protein Mei2, essentia 95.5 0.012 2.6E-07 58.8 3.6 49 177-226 83-131 (549)
148 COG1076 DjlA DnaJ-domain-conta 95.4 0.0089 1.9E-07 51.8 2.1 69 7-78 2-75 (174)
149 KOG0116 RasGAP SH3 binding pro 95.4 0.023 5E-07 55.8 5.1 52 176-227 295-350 (419)
150 KOG4209 Splicing factor RNPS1, 95.4 0.029 6.4E-07 51.0 5.4 70 172-241 104-178 (231)
151 KOG0151 Predicted splicing reg 95.3 0.11 2.3E-06 53.7 9.7 65 177-241 182-255 (877)
152 KOG0109 RNA-binding protein LA 95.2 0.031 6.7E-07 52.1 5.1 58 180-241 89-148 (346)
153 COG1076 DjlA DnaJ-domain-conta 95.2 0.014 3.1E-07 50.6 2.8 54 6-64 113-173 (174)
154 KOG1456 Heterogeneous nuclear 94.8 0.11 2.5E-06 49.9 7.8 71 170-241 289-361 (494)
155 KOG4454 RNA binding protein (R 94.8 0.033 7.2E-07 50.0 3.9 62 179-240 19-84 (267)
156 KOG4212 RNA-binding protein hn 94.6 0.09 1.9E-06 51.6 6.5 65 177-241 52-122 (608)
157 KOG0106 Alternative splicing f 94.3 0.025 5.4E-07 50.8 2.1 59 179-241 11-71 (216)
158 KOG2135 Proteins containing th 94.3 0.078 1.7E-06 52.3 5.5 77 170-249 375-452 (526)
159 KOG4205 RNA-binding protein mu 94.3 0.048 1E-06 51.7 3.9 73 169-241 97-174 (311)
160 KOG0147 Transcriptional coacti 94.2 0.054 1.2E-06 54.2 4.3 61 180-240 190-255 (549)
161 KOG0106 Alternative splicing f 93.1 0.056 1.2E-06 48.6 2.0 56 179-238 109-166 (216)
162 KOG1548 Transcription elongati 92.4 0.28 6.1E-06 46.8 5.8 64 167-230 265-337 (382)
163 KOG1457 RNA binding protein (c 91.6 0.33 7.2E-06 43.9 5.0 54 177-230 218-271 (284)
164 KOG1855 Predicted RNA-binding 91.6 0.12 2.6E-06 50.5 2.4 47 179-225 241-304 (484)
165 PF05172 Nup35_RRM: Nup53/35/4 90.8 0.58 1.3E-05 37.1 5.2 45 182-226 18-73 (100)
166 KOG1190 Polypyrimidine tract-b 90.2 0.28 6.1E-06 47.8 3.5 72 170-241 151-226 (492)
167 KOG0226 RNA-binding proteins [ 90.1 0.39 8.5E-06 44.1 4.2 51 181-231 202-256 (290)
168 KOG0115 RNA-binding protein p5 89.5 0.66 1.4E-05 42.7 5.1 62 165-226 19-91 (275)
169 PF08675 RNA_bind: RNA binding 89.4 1.1 2.3E-05 34.5 5.4 45 180-228 19-63 (87)
170 PF11608 Limkain-b1: Limkain b 89.0 1.3 2.8E-05 34.2 5.6 51 184-240 21-74 (90)
171 KOG0120 Splicing factor U2AF, 88.4 0.82 1.8E-05 46.0 5.4 57 184-240 424-489 (500)
172 KOG4211 Splicing factor hnRNP- 87.4 1.5 3.2E-05 43.8 6.4 60 177-237 18-79 (510)
173 KOG0112 Large RNA-binding prot 83.2 1.6 3.5E-05 46.4 4.6 68 173-242 458-530 (975)
174 PF04059 RRM_2: RNA recognitio 82.7 9.3 0.0002 30.1 7.8 53 176-228 8-66 (97)
175 KOG4212 RNA-binding protein hn 81.4 2.8 6.1E-05 41.5 5.2 60 167-230 536-596 (608)
176 PF03656 Pam16: Pam16; InterP 80.6 3.5 7.6E-05 34.1 4.9 32 9-45 61-92 (127)
177 COG5175 MOT2 Transcriptional r 80.5 2.4 5.2E-05 40.6 4.3 52 187-238 138-198 (480)
178 KOG2202 U2 snRNP splicing fact 79.4 1.3 2.8E-05 40.8 2.1 55 186-240 86-145 (260)
179 KOG1996 mRNA splicing factor [ 79.3 3.7 8.1E-05 38.6 5.1 48 184-231 301-353 (378)
180 PF04847 Calcipressin: Calcipr 78.9 3.1 6.8E-05 36.5 4.4 59 182-242 8-70 (184)
181 KOG4206 Spliceosomal protein s 78.1 5.9 0.00013 35.8 5.9 71 167-240 146-219 (221)
182 PF08952 DUF1866: Domain of un 77.7 4.2 9E-05 34.5 4.6 69 167-239 27-103 (146)
183 KOG4210 Nuclear localization s 76.8 1.9 4E-05 40.5 2.5 64 178-241 194-262 (285)
184 KOG0128 RNA-binding protein SA 76.4 3.2 6.9E-05 44.0 4.2 47 180-226 747-796 (881)
185 KOG4211 Splicing factor hnRNP- 74.3 8 0.00017 38.7 6.1 55 172-226 106-164 (510)
186 PF10309 DUF2414: Protein of u 73.4 14 0.0003 26.8 5.7 44 179-226 14-61 (62)
187 KOG1457 RNA binding protein (c 73.4 9.2 0.0002 34.8 5.8 65 177-241 42-116 (284)
188 KOG4574 RNA-binding protein (c 73.4 3.5 7.7E-05 43.7 3.6 61 180-242 309-373 (1007)
189 KOG0724 Zuotin and related mol 72.1 4.4 9.6E-05 38.4 3.8 55 23-77 4-62 (335)
190 KOG4285 Mitotic phosphoprotein 71.9 7.7 0.00017 36.7 5.1 43 182-226 209-251 (350)
191 PF13446 RPT: A repeated domai 70.3 7.3 0.00016 27.6 3.7 27 6-37 5-31 (62)
192 PF14687 DUF4460: Domain of un 67.3 13 0.00027 30.1 4.9 27 23-49 6-32 (112)
193 KOG1029 Endocytic adaptor prot 65.8 29 0.00063 37.0 8.3 9 193-201 457-465 (1118)
194 KOG0120 Splicing factor U2AF, 64.8 6 0.00013 40.0 3.1 62 179-240 299-366 (500)
195 PF15513 DUF4651: Domain of un 63.3 13 0.00027 27.0 3.7 33 184-216 9-44 (62)
196 KOG3152 TBP-binding protein, a 62.9 6.1 0.00013 36.5 2.5 52 175-226 80-147 (278)
197 KOG1365 RNA-binding protein Fu 57.3 32 0.00069 33.8 6.4 63 166-228 158-227 (508)
198 KOG1995 Conserved Zn-finger pr 57.2 13 0.00029 35.7 3.9 71 171-242 69-153 (351)
199 KOG1548 Transcription elongati 55.7 31 0.00067 33.3 6.0 64 177-240 142-218 (382)
200 KOG4676 Splicing factor, argin 53.6 18 0.00038 35.5 4.0 65 177-241 15-87 (479)
201 KOG2891 Surface glycoprotein [ 52.0 17 0.00036 34.2 3.5 34 169-202 156-194 (445)
202 PF03468 XS: XS domain; Inter 51.0 13 0.00028 30.1 2.4 46 179-224 27-74 (116)
203 KOG2068 MOT2 transcription fac 43.4 17 0.00038 34.7 2.3 46 181-226 90-144 (327)
204 PF10567 Nab6_mRNP_bdg: RNA-re 41.5 1.1E+02 0.0024 29.0 7.2 63 179-241 25-106 (309)
205 PF11767 SET_assoc: Histone ly 40.3 1.1E+02 0.0024 22.3 5.6 47 179-230 10-56 (66)
206 PF02714 DUF221: Domain of unk 35.1 53 0.0012 30.6 4.2 31 210-240 1-31 (325)
207 KOG2416 Acinus (induces apopto 33.0 21 0.00045 36.8 1.1 56 180-237 455-514 (718)
208 PF11833 DUF3353: Protein of u 32.0 66 0.0014 28.5 4.0 35 22-64 3-37 (194)
209 KOG0128 RNA-binding protein SA 32.0 13 0.00027 39.7 -0.6 47 180-226 678-728 (881)
210 PF12385 Peptidase_C70: Papain 31.8 54 0.0012 28.3 3.2 21 178-198 93-113 (166)
211 KOG2318 Uncharacterized conser 31.7 1.9E+02 0.0041 30.0 7.5 37 207-243 268-308 (650)
212 KOG4307 RNA binding protein RB 30.1 77 0.0017 33.6 4.6 59 170-229 3-62 (944)
213 PF04430 DUF498: Protein of un 29.8 1.1E+02 0.0024 24.0 4.7 50 172-221 29-93 (110)
214 PF08544 GHMP_kinases_C: GHMP 27.2 1.2E+02 0.0027 21.7 4.3 42 184-226 37-78 (85)
215 KOG0129 Predicted RNA-binding 27.1 1.3E+02 0.0029 30.5 5.6 63 177-239 378-450 (520)
216 KOG4307 RNA binding protein RB 24.6 1.5E+02 0.0032 31.6 5.4 58 172-229 870-931 (944)
217 PF01071 GARS_A: Phosphoribosy 24.5 2.5E+02 0.0055 24.8 6.4 57 181-238 24-86 (194)
218 PTZ00071 40S ribosomal protein 23.4 3.5E+02 0.0075 22.6 6.5 52 169-221 23-85 (132)
219 PF12434 Malate_DH: Malate deh 21.9 99 0.0021 18.7 2.2 18 24-41 9-26 (28)
220 PF10921 DUF2710: Protein of u 21.7 1.5E+02 0.0031 23.5 3.7 20 266-285 14-33 (109)
221 PF12631 GTPase_Cys_C: Catalyt 20.8 74 0.0016 23.2 1.9 17 177-193 56-72 (73)
No 1
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-28 Score=227.32 Aligned_cols=265 Identities=27% Similarity=0.336 Sum_probs=169.2
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKREK 83 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~ 83 (292)
.+.|||+||||+.+ ++..+|++|||.+|++|||||||+||.|.+.|+.|.+||+||+|+.+|..||.+++.....
T Consensus 3 ~~~dyY~lLgi~~~-----at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 3 KDTDYYDLLGISED-----ATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred ccchHHHHhCCCCC-----CCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 47899999999998 9999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCh-----hhhhhhhhhhcCC
Q 022762 84 QQRQSQQDGKRRKMMSDLEERERAAFAPDPAVKARQEEEKIARQLKEEIERIRAMHENKRTP-----AAFASVKETKQSG 158 (292)
Q Consensus 84 ~~r~~~~~~kr~~~~~dLe~RE~~~~~~~~~~~~~~~~~~~~~~l~eE~~r~r~~~~~~~~~-----~~~~~~~~~~~~~ 158 (292)
..+..+.+..|..+..|+++++..+.+..........+ . ..+.+++...+++...++.. ........ .
T Consensus 78 ~~~~d~~~~~r~~f~~dl~~~~~~~~a~~~~~~e~~~e-~--~~~~~k~~~~~~er~~~l~~~~~~~l~~~~~~~--~-- 150 (296)
T KOG0691|consen 78 QGREDQADGFRKKFGSDLFERERGALALLKESEESELE-R--ERLQEKFRAVQRERVDKLVEILREKLSEVVESV--E-- 150 (296)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHHHhHHhhhhhhhhh-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--h--
Confidence 89999999999999999999999866644331000000 0 01111221221111111000 00000000 0
Q ss_pred CCCCCCC----ccceEEEEeee-cCCCCCHHHHHHHhcccCCeeEEEEec--CCCcce---EEEEecCHHHHHHHHHhhc
Q 022762 159 SGGVGLD----KEKVLKVSWEK-FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGS---ALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 159 ~~~~~~~----~~~~lkvKWk~-~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~---A~V~F~~~~~A~~Av~~~~ 228 (292)
...-.+. ....+...|-. .+..|+. .....|++|+.+..|.... .+.+|- +.+.+++...+.....++.
T Consensus 151 ~~~~~~e~~~l~~e~~~~e~~~~~g~~y~~-~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~ 229 (296)
T KOG0691|consen 151 ERKLATEALQLQRERFGEELLHTIGRTYSR-TKALKPIKFRTSPGVSKLSEGSRAKGGALRAMWNLAAGAVALYGGQDEM 229 (296)
T ss_pred hhhhhHHHHHHHHhhhhHHHHHhhcccchh-hHhhhccccccccCcchhhhcccccchhHHHHHhhhHHHHHHHHHHHHH
Confidence 0000000 00112222222 4445665 6777777777655555432 333332 3456666666666667788
Q ss_pred CCCCCCeEEEecCCCccCCCCCCCCCCCccccCcCCCcChHhHHHHHHHHHH--hHHHHHh
Q 022762 229 GNLSNPLLVLPLQPAVATQIPSAPKPVETESINNLVGAGYQAHEDAILEKLR--EKAKEKN 287 (292)
Q Consensus 229 g~~~~pl~v~~~~~~~~~~~p~~~~~~~~~~~s~~~~~s~~d~E~~vl~rlr--~a~erk~ 287 (292)
+.+.+|+.+.|..++ ..+. ..+ ....+++.+++..|+|+.+++.++ ++.+..+
T Consensus 230 ~~~~~~~~~~~e~~~---~~~~--~~~-~~~~~~~~~~s~~dies~l~~~~~~~~d~~v~~ 284 (296)
T KOG0691|consen 230 EKLLEALGEALEKRA---EYAS--AKT-GKSLDTLWHGSSFDIESTLIRVCQKIKDPSVPL 284 (296)
T ss_pred HhhhcchHHHhhhch---HHHH--Hhh-cchhhhhhHhHHHHHHHHHHHHHHHhcChHHHH
Confidence 899999888887631 0100 001 111233456789999999999999 6555544
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-22 Score=191.71 Aligned_cols=74 Identities=32% Similarity=0.625 Sum_probs=69.6
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKR 81 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 81 (292)
+...|||+||||+++ ||.+|||+|||+||++||||+||++++|.++|++|++||+||+||.+|+.||.+..+..
T Consensus 1 ~~~~dyYeiLGV~k~-----As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 1 MAKRDYYEILGVSKD-----ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CCccchhhhcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 357899999999998 99999999999999999999999999999999999999999999999999999886544
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-22 Score=187.51 Aligned_cols=70 Identities=41% Similarity=0.805 Sum_probs=67.5
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ |++.+||+|||+||++|||||||+||.|.+.|+.|+.||+||+||.+|+.||....
T Consensus 14 ~~rDfYelLgV~k~-----Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 14 AGRDFYELLGVPKN-----ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred cCCCHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 46899999999998 99999999999999999999999999999999999999999999999999999983
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=2.9e-19 Score=171.72 Aligned_cols=69 Identities=32% Similarity=0.605 Sum_probs=65.7
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ||.++||+|||+||++||||+|++++.|.+.|+.|++||+||+||.+|..||.+..
T Consensus 2 ~~dyY~vLgv~~~-----As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKH-----SNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 5799999999998 99999999999999999999999888899999999999999999999999999764
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.4e-18 Score=168.26 Aligned_cols=71 Identities=37% Similarity=0.620 Sum_probs=66.7
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+...|||+||||+++ |+.++||+|||++|++||||+|++++.|.+.|+.|++||+||+||.+|+.||.+..
T Consensus 6 ~~~~Dyy~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 6 WVEKDFYKELGVSSD-----ASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred hcccCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 345799999999998 89999999999999999999999888999999999999999999999999999863
No 6
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-18 Score=156.57 Aligned_cols=70 Identities=43% Similarity=0.760 Sum_probs=66.8
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|+|+||||+++ ++.++|||+||+++++||||+++++|++..+|+.|+.||.||+||.+|..||.++.
T Consensus 29 ~~~~LYdVLgl~k~-----at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKT-----ATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred chhHHHHHhCCCcc-----cchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 46789999999998 89999999999999999999999999999999999999999999999999999864
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=165.62 Aligned_cols=68 Identities=35% Similarity=0.608 Sum_probs=64.2
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++||+|||++|++||||+|+ ++.|.+.|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~dyY~~Lgv~~~-----a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKT-----ASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 5799999999998 89999999999999999999998 57899999999999999999999999999754
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-18 Score=160.74 Aligned_cols=67 Identities=37% Similarity=0.733 Sum_probs=63.2
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.+..||+||||+++ ||+.|||+|||++|++|||||||+ +.++|++|+.||+||+||.+|..||.+..
T Consensus 2 ~~~~~y~il~v~~~-----As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPD-----ASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCC-----cCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 46789999999998 999999999999999999999985 78999999999999999999999999874
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4e-18 Score=164.07 Aligned_cols=69 Identities=32% Similarity=0.635 Sum_probs=65.6
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+.|||+||||+++ ||.++|++|||++|++||||+|++++.|.+.|+.|++||+||+||.+|..||.+..
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKS-----ANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 5799999999998 89999999999999999999999888899999999999999999999999998754
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.6e-17 Score=160.52 Aligned_cols=70 Identities=37% Similarity=0.660 Sum_probs=66.1
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ ||.++|++|||++|++||||+|++++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 3 ~~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 3 AKKDYYEILGVDRN-----ATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 45799999999998 99999999999999999999999888899999999999999999999999999753
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=159.71 Aligned_cols=69 Identities=35% Similarity=0.635 Sum_probs=65.4
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ||.++||+|||+++++||||+|++++.|.+.|+.|++||+||+||.+|..||.+..
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKG-----ASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 4699999999998 99999999999999999999999888899999999999999999999999999754
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=2e-17 Score=120.03 Aligned_cols=63 Identities=38% Similarity=0.790 Sum_probs=59.7
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHH
Q 022762 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFD 74 (292)
Q Consensus 7 d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD 74 (292)
|||+||||+++ ++.++|+++|+++++.+|||++++++ .+...|..|+.||++|+||..|..||
T Consensus 1 ~~y~iLgl~~~-----~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPD-----ASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTT-----SSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCC-----CCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 69999999998 89999999999999999999998766 68899999999999999999999998
No 13
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.4e-17 Score=159.52 Aligned_cols=68 Identities=43% Similarity=0.716 Sum_probs=64.3
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
+..|||+||||+++ |+.++|++|||++|++||||+|++++.|.+.|+.|++||+||+||.+|+.||..
T Consensus 7 ~~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 74 (389)
T PRK14295 7 IEKDYYKVLGVPKD-----ATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEA 74 (389)
T ss_pred cccCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 35699999999998 899999999999999999999998888999999999999999999999999983
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.3e-17 Score=158.57 Aligned_cols=69 Identities=33% Similarity=0.691 Sum_probs=64.4
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ||.++|++|||++|++||||+|+++ +.|.+.|+.|++||++|+||.+|+.||.+..
T Consensus 3 ~~d~y~~lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRN-----ATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 5799999999998 9999999999999999999999865 6788999999999999999999999998753
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.8e-17 Score=157.91 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=65.9
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ |+..+|++|||++|++||||++++++.+.+.|+.|++||+||+||.+|..||.+..
T Consensus 2 ~~~d~y~~lgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 2 VKRDYYEILGVTRD-----ASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCCChHHHhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 35799999999998 89999999999999999999999888899999999999999999999999998763
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.4e-17 Score=158.64 Aligned_cols=69 Identities=39% Similarity=0.740 Sum_probs=65.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ||.++|++|||++|++||||+|++++.|.+.|+.|++||+||+||.+|..||.+..
T Consensus 3 ~~~~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRD-----ASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCC-----CCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 5799999999998 89999999999999999999999888899999999999999999999999998754
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=158.69 Aligned_cols=69 Identities=32% Similarity=0.657 Sum_probs=65.4
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++|++|||++|++||||+|++++.|.+.|+.|++||++|+||.+|+.||.+..
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKG-----ASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 4799999999998 89999999999999999999999888899999999999999999999999998753
No 18
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.3e-17 Score=156.85 Aligned_cols=68 Identities=34% Similarity=0.605 Sum_probs=63.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++|++|||++|++||||+|+ ++.|.+.|+.|++||++|+||.+|+.||.+..
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRN-----ASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4699999999998 89999999999999999999997 57889999999999999999999999999753
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.2e-17 Score=157.27 Aligned_cols=69 Identities=32% Similarity=0.602 Sum_probs=64.8
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ |+.++||+|||++|++||||+|+ ++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 3 ~~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRN-----ADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 46899999999998 99999999999999999999998 47899999999999999999999999999753
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.2e-17 Score=157.92 Aligned_cols=68 Identities=37% Similarity=0.693 Sum_probs=64.8
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ ||.++||+|||++|++||||+|++++.|.+.|+.|++||++|+||.+|+.||.+..
T Consensus 1 ~d~y~iLgv~~~-----a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKT-----ASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 489999999998 99999999999999999999999888899999999999999999999999999764
No 21
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.3e-17 Score=157.31 Aligned_cols=68 Identities=28% Similarity=0.566 Sum_probs=64.0
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+.|||+||||+++ ||.++|++|||++|++||||+|+ ++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKD-----ASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 5799999999998 89999999999999999999998 57889999999999999999999999998753
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.2e-17 Score=156.26 Aligned_cols=70 Identities=37% Similarity=0.702 Sum_probs=65.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ |+.++|++|||++|++||||+|++++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 2 ~~~d~y~iLgv~~~-----as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 2 AKRDYYEVLGVSRN-----ASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCCChHHhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 35799999999998 89999999999999999999999888899999999999999999999999998753
No 23
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.6e-17 Score=151.32 Aligned_cols=68 Identities=32% Similarity=0.639 Sum_probs=64.2
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ||.++||+|||++|++||||+|+ ++.+.+.|+.|++||++|+||.+|..||.+..
T Consensus 3 ~~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKN-----ASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 5799999999998 89999999999999999999997 68899999999999999999999999999764
No 24
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.68 E-value=4.1e-17 Score=159.07 Aligned_cols=66 Identities=38% Similarity=0.657 Sum_probs=61.0
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ ||.++||+|||++|++||||+|++ .+.|+.|++||+||+||.+|+.||.+..
T Consensus 26 ~~~d~Y~vLGV~~~-----As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 26 DNEKLYEVLNLSKD-----CTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred cchhHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 35799999999998 899999999999999999999863 4799999999999999999999999764
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.4e-17 Score=156.50 Aligned_cols=68 Identities=35% Similarity=0.623 Sum_probs=63.8
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++|++|||++|++||||+|+ ++.|.+.|+.|++||+||+||.+|..||.+..
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 2 ARDYYGLLGVSRN-----ASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCCcceecCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 3699999999998 89999999999999999999998 68899999999999999999999999998753
No 26
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-17 Score=158.13 Aligned_cols=72 Identities=35% Similarity=0.700 Sum_probs=65.3
Q ss_pred CCCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD---PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 2 ~~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+++++|||.+|||+++ ||++||++|||++|+.|||||..|. ..|.+.|+.|..||+||+||.+|+.||.+..
T Consensus 5 e~~e~e~Ya~LNlpkd-----At~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKD-----ATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred ccchhhHHHHhCCCcc-----cCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 3567899999999998 9999999999999999999998642 2488999999999999999999999999974
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.8e-17 Score=156.53 Aligned_cols=68 Identities=35% Similarity=0.696 Sum_probs=64.0
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++||+|||++|++||||+|+ ++.+.+.|+.|++||++|+||.+|..||.+..
T Consensus 2 ~~d~Y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRN-----ATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4699999999998 89999999999999999999998 47889999999999999999999999999764
No 28
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.2e-17 Score=155.27 Aligned_cols=71 Identities=35% Similarity=0.610 Sum_probs=65.1
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.+..+||+||||..+ +++.+|+++||++||+|||||||+.- +|++.|+.|+.||+|||||..|+.||....
T Consensus 5 ~~~~c~YE~L~v~~~-----a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERD-----ADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhccccc-----CCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 356789999999998 89999999999999999999998764 699999999999999999999999998654
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.2e-17 Score=156.57 Aligned_cols=69 Identities=36% Similarity=0.717 Sum_probs=65.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+..+|++|||++|++||||++++++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 2 ~~d~y~iLgv~~~-----a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRS-----ADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 4699999999998 89999999999999999999999888899999999999999999999999998764
No 30
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.3e-17 Score=154.81 Aligned_cols=68 Identities=34% Similarity=0.673 Sum_probs=63.8
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++|++|||++|++||||+|+ ++.+.+.|+.|++||++|+||.+|+.||.+..
T Consensus 4 ~~d~y~iLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKD-----ASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 4699999999998 89999999999999999999997 57888999999999999999999999998753
No 31
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=154.22 Aligned_cols=68 Identities=31% Similarity=0.606 Sum_probs=63.8
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++||+|||++|++||||+|+ ++.|.+.|++|++||++|+||.+|+.||.+..
T Consensus 3 ~~~~y~iLgv~~~-----a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKS-----ASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 4799999999998 89999999999999999999998 57789999999999999999999999999753
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=153.48 Aligned_cols=70 Identities=37% Similarity=0.681 Sum_probs=66.2
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ |+.++|++|||++|++||||+|++++.|.+.|+.|++||++|+||.+|..||.+..
T Consensus 3 ~~~~~y~~Lgv~~~-----a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 3 EKRDYYEVLGVSKT-----ATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred ccCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 46899999999998 89999999999999999999999888999999999999999999999999999754
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.4e-16 Score=150.30 Aligned_cols=68 Identities=29% Similarity=0.627 Sum_probs=63.9
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ |+..+|++|||+++++||||++++++ .|.+.|+.|++||++|+|+.+|..||.+..
T Consensus 3 ~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRN-----ASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 699999999998 99999999999999999999998765 788999999999999999999999998653
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.61 E-value=5.7e-16 Score=148.17 Aligned_cols=66 Identities=35% Similarity=0.683 Sum_probs=62.4
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 7 d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
|||+||||+++ |+.++||+|||++|++||||+++ ++.+.+.|+.|++||++|+|+.+|..||.+..
T Consensus 1 d~y~~Lgv~~~-----a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKD-----ASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 79999999998 89999999999999999999998 67788999999999999999999999998754
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.8e-16 Score=143.34 Aligned_cols=70 Identities=34% Similarity=0.536 Sum_probs=65.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (292)
..|||+||||+++ |+..|||+||++||++||||.|.+ +.|.+.|+.|.+||++|+|+.+|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~-----At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRN-----ATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCC-----CCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999998 999999999999999999999985 589999999999999999999999999998754
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.2e-16 Score=148.43 Aligned_cols=67 Identities=31% Similarity=0.607 Sum_probs=63.1
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ ||..+|++|||+++++||||+++ ++.+.+.|+.|++||++|+|+.+|..||.+..
T Consensus 3 ~~~y~iLgv~~~-----as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKT-----ASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999998 89999999999999999999997 57788999999999999999999999999753
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.60 E-value=8.2e-16 Score=158.83 Aligned_cols=70 Identities=27% Similarity=0.458 Sum_probs=65.0
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+.+.+||+||||+++ ||..+||+|||++|++||||++|++ .|...|+.|++||+||+||.+|..||.+..
T Consensus 570 ~~d~dYYdILGVs~d-----AS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 570 IPDTLFYDILGVGVN-----ADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCCChHHHcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 356899999999998 9999999999999999999999965 688899999999999999999999999764
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=1.4e-15 Score=108.61 Aligned_cols=58 Identities=40% Similarity=0.774 Sum_probs=54.1
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHHHHccCch
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD-DPDAHDNFQKLKSSYEILKDEK 68 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~-~~~a~~~f~~i~~Ay~vL~d~~ 68 (292)
.|||+||||+++ ++..+|+++|+++++.||||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~-----~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRD-----ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999997 899999999999999999999986 5778899999999999999985
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=9.9e-16 Score=143.87 Aligned_cols=67 Identities=33% Similarity=0.577 Sum_probs=63.0
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
..|||+||||+++ ++.++|++|||++|++||||+++ ++.+.+.|+.|++||++|+||.+|..||.+.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPT-----DDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999998 89999999999999999999987 5678999999999999999999999999875
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.5e-16 Score=136.79 Aligned_cols=70 Identities=44% Similarity=0.720 Sum_probs=64.1
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRP--DDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~--~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|+|+||||..+ |++.+|++|||++++.||||+++ +..+|.+.|+.|+.||.||+|..+|+.||....
T Consensus 12 ~~~d~YevLGVer~-----a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERD-----ATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhccc-----CCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 45699999999998 99999999999999999999994 455799999999999999999999999998754
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.1e-15 Score=147.22 Aligned_cols=67 Identities=30% Similarity=0.600 Sum_probs=63.2
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+|||+||||+++ |+.++|++|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|+.||.+..
T Consensus 2 ~d~y~~Lgv~~~-----a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRT-----ASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 599999999998 89999999999999999999997 67889999999999999999999999999753
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-15 Score=146.72 Aligned_cols=68 Identities=31% Similarity=0.643 Sum_probs=63.6
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+..+|++|||+++++||||+|+ ++.+.+.|+.|++||++|+||.+|+.||.+..
T Consensus 2 ~~d~y~vLgv~~~-----a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRD-----ADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 4699999999998 89999999999999999999998 57789999999999999999999999998753
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=3.1e-15 Score=104.84 Aligned_cols=55 Identities=47% Similarity=0.950 Sum_probs=51.4
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccC
Q 022762 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKD 66 (292)
Q Consensus 7 d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 66 (292)
|||+||||+++ ++.++|+++|+++++.||||++++.+.+.+.|..|+.||++|+|
T Consensus 1 ~~y~vLgl~~~-----~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPD-----ASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999987 89999999999999999999997556788999999999999987
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.1e-15 Score=128.86 Aligned_cols=72 Identities=40% Similarity=0.746 Sum_probs=66.8
Q ss_pred CCCCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-HHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 1 MDVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-AHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 1 ~~~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
|.....|||+||||+++ ++..+|+++||+++++||||++++++. +.+.|..|++||++|+|+..|..||...
T Consensus 1 ~~~~~~~~y~iLgv~~~-----as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPN-----ASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34567899999999987 999999999999999999999998885 9999999999999999999999999864
No 45
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=2.7e-14 Score=123.67 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=73.7
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (292)
+|||+||||++.+ +++..+|+++||++++++|||+.++.+. +.+.|..|++||++|+||..|+.|+..+...
T Consensus 1 ~~yf~llgl~~~~---~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARY---DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 4899999999963 4789999999999999999999876543 5678999999999999999999999766532
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 81 REKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 81 ~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
..... ......-.-+++.++.||.
T Consensus 78 ~~~~~--~~~~~d~efLme~me~rE~ 101 (171)
T PRK05014 78 DLAHE--QHTVRDTAFLMEQMELREE 101 (171)
T ss_pred ccccc--cCCcCCHHHHHHHHHHHHH
Confidence 21111 0011123467788888886
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-14 Score=127.64 Aligned_cols=69 Identities=35% Similarity=0.685 Sum_probs=63.1
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.-|||+||||+++ +++.|||+|||+|+++|||||+|+-.+..+.|..|.+||..|+|+..|..|..+..
T Consensus 98 ~fDPyEILGl~pg-----as~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 98 KFDPYEILGLDPG-----ASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred cCCcHHhhCCCCC-----CCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4699999999998 89999999999999999999998545667889999999999999999999998754
No 47
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=1.4e-13 Score=119.31 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=77.5
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||++|||++.. .++..+|+++||+++++||||++++.+. +.+.|..|+.||.+|+||..|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f---~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSF---RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 578999999999974 6889999999999999999999877653 56789999999999999999999998776
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 79 IKREKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 79 ~~~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
...... ......-.-+++.|+.||.
T Consensus 79 g~~~~~---~~~~~d~~fLme~me~rE~ 103 (173)
T PRK00294 79 GHEVPL---EVTVHDPEFLLQQMQLREE 103 (173)
T ss_pred CCCCCc---ccCCCCHHHHHHHHHHHHH
Confidence 322111 1111133467888999987
No 48
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.4e-14 Score=122.24 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhH-----HHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDA-----HDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 2 ~~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a-----~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
.....|||+||||++.+ +++..+|+++||+++++||||++++.+.+ .+.+..|+.||.+|+||..|+.|...
T Consensus 2 ~~~~~dyf~llglp~~f---~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 2 VSLKDDHFSLFGLPARF---ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCCCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34568999999999963 57899999999999999999998866654 34468999999999999999999987
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 77 LKIKREKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 77 ~~~~~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
+........ ......-.-|++-++.||.
T Consensus 79 l~G~~~~~e--~~~~~d~~fLme~mE~rE~ 106 (176)
T PRK03578 79 LRGVDVQAE--NNTAMPPAFLMQQMEWREA 106 (176)
T ss_pred hcCCCCccc--cCCCCCHHHHHHHHHHHHH
Confidence 653211100 0111233467788888887
No 49
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-13 Score=117.30 Aligned_cols=71 Identities=31% Similarity=0.580 Sum_probs=63.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHccCchhhhhHHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (292)
-++|+|+||.|.++ .+.++|++.||++++..|||||||| +.|...|..+..||.+|-|+..|..-+....+
T Consensus 51 fnLNpfeVLqIdpe-----v~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~~ 122 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPE-----VTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYTA 122 (250)
T ss_pred cccChHHHHhcCCC-----CCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 47899999999998 8999999999999999999999998 67999999999999999999977765554443
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=3e-13 Score=116.60 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=71.4
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHccCchhhhhHHHHHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD---AHDNFQKLKSSYEILKDEKARKLFDDLLKIKRE 82 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 82 (292)
.|||+||||++.. +++..+|+++||+++++||||++++.++ +...|..|++||++|+||.+|+.|+..+..-..
T Consensus 2 ~~yf~llgl~~~f---~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~ 78 (166)
T PRK01356 2 QNYFQLLGLPQEY---NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINL 78 (166)
T ss_pred CCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCC
Confidence 5899999999973 4899999999999999999999874332 345688999999999999999999877642211
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 83 KQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 83 ~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
..... .....-.-+++.++.||.
T Consensus 79 ~~~~~-~~~~d~~fLme~me~rE~ 101 (166)
T PRK01356 79 NDEKT-RSLLSPLELSIFWDEMER 101 (166)
T ss_pred CCccc-cccCCHHHHHHHHHHHHH
Confidence 00000 000123356778888876
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.44 E-value=1.1e-13 Score=140.37 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=63.1
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ |+..+||++||+++++||||++++ +.+...|+.|+.||++|+||.+|..||.+..
T Consensus 2 ~DYYeVLGVs~d-----AS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRD-----ADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 589999999998 899999999999999999999975 7888999999999999999999999999764
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.40 E-value=1.7e-13 Score=116.23 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=58.1
Q ss_pred cccccccccccCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKL--TEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a--~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..+|+||||+++ | |..+||+|||++++++||||+++ .+.|+.|++||++|+|+..|..||....
T Consensus 5 ~~l~~vLGl~~~-----A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRS-----AWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCC-----CCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 357999999998 8 99999999999999999999753 3699999999999999999999998763
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9.6e-13 Score=126.71 Aligned_cols=70 Identities=39% Similarity=0.657 Sum_probs=65.8
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (292)
+..|+|.+|||+++ +++.+||+.||++|...|||||- .|.|.+.|..|+.||++|+|+.+|..||..+..
T Consensus 233 ~~~daYsvlGl~~d-----~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 233 NILDAYSALGLPSD-----CSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred cCCCchhhcCCCCC-----CCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 35799999999987 99999999999999999999997 899999999999999999999999999998753
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.5e-13 Score=118.81 Aligned_cols=71 Identities=37% Similarity=0.605 Sum_probs=64.7
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKIKR 81 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 81 (292)
..|+|+||||.++ ++..+|.+|||+||++||||+++ ++++...|..|..||++|.|...|..||-.+..-.
T Consensus 32 ~enCYdVLgV~Re-----a~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 32 AENCYDVLGVARE-----ANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred chhHHHHhhhhhh-----ccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 4689999999998 89999999999999999999998 56677999999999999999999999998876433
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=4.9e-12 Score=118.84 Aligned_cols=69 Identities=32% Similarity=0.553 Sum_probs=62.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP---DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
...|||.||||.++ |+..+|-||||++|.+||||-..+.. .|..+|.-|..|-+||+||.+|+.||+..
T Consensus 392 ~kRDYYKILGVkRn-----AsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 392 GKRDYYKILGVKRN-----ASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred ccchHHHHhhhccc-----ccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 35799999999998 89999999999999999999987543 48889999999999999999999999864
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.4e-11 Score=110.68 Aligned_cols=69 Identities=38% Similarity=0.692 Sum_probs=61.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||.||||.++ ++..+|++||++++++||||+|+.+ ..+...|.+|.+||++|+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~-----as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARS-----ASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCcccc-----ccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 5799999999987 7888999999999999999998865 2455589999999999999999999999875
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.2e-11 Score=115.40 Aligned_cols=68 Identities=35% Similarity=0.587 Sum_probs=64.0
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD-PDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
-.|||.||||+.+ ++..+|++|||++++.||||++.++ .++...|..+..||.+|+||.+|..||...
T Consensus 372 Rkd~ykilGi~~~-----as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 372 RKDWYKILGISRN-----ASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhHHHHhhhhhh-----cccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 5799999999998 8999999999999999999999988 688999999999999999999999999764
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.12 E-value=5.9e-11 Score=109.65 Aligned_cols=56 Identities=34% Similarity=0.543 Sum_probs=50.2
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hhHHHHHHHHHHHHHHccC
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD--D-----PDAHDNFQKLKSSYEILKD 66 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~--~-----~~a~~~f~~i~~Ay~vL~d 66 (292)
.|+|+||||+++ +|.++||++||+++++||||++.+ . +.+.+.|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~-----as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSES-----DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCC-----CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998 899999999999999999999743 2 2478999999999999974
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.10 E-value=7.4e-11 Score=95.54 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=46.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHcc
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (292)
..++|+||||+++ +|.++|+++||++++++|||+. ++ ...|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~-----As~~eIkkaYRrLa~~~HPDkg-Gs---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPT-----ASKERIREAHKQLMLRNHPDNG-GS---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCC-----CCHHHHHHHHHHHHHHhCCCCC-CC---HHHHHHHHHHHHHHh
Confidence 3689999999998 8999999999999999999985 33 468999999999985
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.08 E-value=1.3e-09 Score=94.56 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=73.9
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (292)
.|||++|||++.. .++...+++.|+.+...+|||+..+.+. +.+.-..||+||.+|.||..|+.|--.+...
T Consensus 2 ~nyF~lf~lp~~F---~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g 78 (173)
T PRK01773 2 NNPFALFDLPVDF---QLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTG 78 (173)
T ss_pred CChHHhcCCCCCC---CCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccC
Confidence 5899999999975 6999999999999999999999876542 4556789999999999999999998877621
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 81 REKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 81 ~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
..... .......-.-+++-++.||.
T Consensus 79 ~~~~~-e~~~~~d~~fLme~ME~rE~ 103 (173)
T PRK01773 79 EQQNL-EEKSTQDMAFLMQQMEWREQ 103 (173)
T ss_pred CCCCc-ccccCCCHHHHHHHHHHHHH
Confidence 10000 01112233467888888886
No 61
>PHA02624 large T antigen; Provisional
Probab=99.00 E-value=3.6e-10 Score=113.78 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=54.6
Q ss_pred cccccccccccCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhH
Q 022762 6 VDHYRVLGLPSGEEGAKL--TEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLF 73 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a--~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (292)
.++|+||||+++ + +..+||+|||++|++||||++. + .+.|+.|+.||++|+|+.++..|
T Consensus 11 ~elyelLGL~~~-----A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMA-----AWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCC-----CCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 479999999998 8 9999999999999999999964 3 57999999999999999999888
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.99 E-value=4.2e-09 Score=90.08 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 022762 22 KLTEKEISKAYKWKALELHPDKRPDDP-----DAHDNFQKLKSSYEILKDEKARKLFDDLLKIKREKQQRQSQQDGKRRK 96 (292)
Q Consensus 22 ~a~~~eIkkaYrk~al~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~r~~~~~~kr~~ 96 (292)
..+..+|+++||+++.+||||+.++.+ .+...|..|++||++|+||.+|+.|...+........... ...-.-
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~--~~d~~f 79 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHS--VRDTAF 79 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCC--CCCHHH
Confidence 368899999999999999999976543 2668899999999999999999999998863221111001 112235
Q ss_pred HHHHHHHHHH
Q 022762 97 MMSDLEERER 106 (292)
Q Consensus 97 ~~~dLe~RE~ 106 (292)
+++-++.||.
T Consensus 80 Lme~Me~rE~ 89 (157)
T TIGR00714 80 LMEQLELREE 89 (157)
T ss_pred HHHHHHHHHH
Confidence 6677777775
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.93 E-value=6.5e-10 Score=107.15 Aligned_cols=67 Identities=27% Similarity=0.641 Sum_probs=60.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChhHHHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD-----DPDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~-----~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
.-|||+||||+.+ +++.+||++||+|+.++||||.|. ..+-.+.+..|++||..|+|...|..|-.+
T Consensus 97 ~fDPyEILGI~~~-----ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 97 GFDPYEILGIDQD-----TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred CCChHHhhcccCC-----CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4699999999998 899999999999999999999875 125688999999999999999999999877
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.2e-10 Score=100.52 Aligned_cols=73 Identities=32% Similarity=0.436 Sum_probs=64.3
Q ss_pred CCCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCChhHHHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 2 DVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKR--PDDPDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 2 ~~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~--~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
+|...|+|.+|||+.- ...++..+|.++.++...+||||+. .++......|..|+.||+||+|+..|..||..
T Consensus 39 ~Wk~~DlYa~lgLsky--R~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 39 NWKKVDLYALLGLSKY--RTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhHHHHhchHhh--hcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 4678999999999874 3368999999999999999999996 34556788999999999999999999999974
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=3.2e-09 Score=74.58 Aligned_cols=54 Identities=33% Similarity=0.364 Sum_probs=45.3
Q ss_pred HHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEec
Q 022762 186 LREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPL 240 (292)
Q Consensus 186 L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~ 240 (292)
|.++|++||+|..|.+.. +++|+|+|+|.+.++|..|+. ++.-..++||.|.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~-~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK-KKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET-TSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 789999999999999943 336999999999999999998 466678889999873
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.7e-08 Score=89.41 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=63.1
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
+|+| .+.+.+++++.|++||.+||.|..|.|. ++..+|||||.|.+.++|..||. +++|+....|.|.|..|
T Consensus 191 tvRv--tNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 191 TVRV--TNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred eeEE--ecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 4444 4566789999999999999999999884 37789999999999999999997 58999999999999986
No 67
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.71 E-value=6.4e-08 Score=81.57 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=57.8
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|+++|+++|++||.|.+|.|. +++.+|+|||+|.+.++|..|+.. ...+.+.+|+|.|..+
T Consensus 41 nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 556679999999999999999999885 256799999999999999999975 4556789999999764
No 68
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.57 E-value=2e-07 Score=88.17 Aligned_cols=69 Identities=25% Similarity=0.193 Sum_probs=59.3
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.......++++.|.++|++||.|..|.|. ++..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 274 V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 274 VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34455679999999999999999999885 356799999999999999999974 6667889999999853
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.55 E-value=1.2e-06 Score=80.26 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=58.3
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
...+...|+++|+++|+.||.|.+|.|.. ...+|+|||+|.+.++|..|+. ++..+.+.+|.|.+..+
T Consensus 10 gNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 10 SNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 34556799999999999999999999964 3468999999999999999996 47778899999999753
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.52 E-value=3.1e-07 Score=65.95 Aligned_cols=53 Identities=36% Similarity=0.568 Sum_probs=46.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG 229 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g 229 (292)
.+.++|++.|+++|+.||.|..+.+.. +..+|+|||+|.+.++|..|+....|
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 356799999999999999999988853 56799999999999999999986444
No 71
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.49 E-value=5.4e-07 Score=86.28 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=56.1
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC----CCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN----LSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g~----~~~pl~v~~~~~ 242 (292)
......+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|+.||....+. ...||.|.|..+
T Consensus 199 ~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 199 TNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred eCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 34556799999999999999999988852 456899999999999999999864443 347999999764
No 72
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.47 E-value=7.9e-07 Score=85.16 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=56.8
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....+|++.|+++|+.||+|.+|.|. +.+++|+|||+|.+.++|..|+.. ...+...||+|.|..+
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 45679999999999999999999874 256789999999999999999964 6667789999999764
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=5.1e-07 Score=71.66 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=54.1
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~Av~~~~g~~--~~pl~v~~~~ 241 (292)
....+|.+...+||.+||+|..|.|.+ ...+|+|||+|++..+|.+|+.+..|.- +.+|.|.+-.
T Consensus 26 Lp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 26 LPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred CCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 566799999999999999999999964 5579999999999999999999866654 4455555543
No 74
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.42 E-value=7.8e-07 Score=84.09 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=57.8
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|+.||+|.+|.|.. ++.+|||||+|.+.++|..|+. ++..+.+.+|.|.|..+
T Consensus 10 nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 10 YLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 3556799999999999999999998842 5678999999999999999996 46677789999999765
No 75
>smart00360 RRM RNA recognition motif.
Probab=98.36 E-value=1.7e-06 Score=60.65 Aligned_cols=50 Identities=40% Similarity=0.566 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
..++.+.|+++|+.||.|..|.+.. +..+|+|||+|.+.++|..|+....
T Consensus 6 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 6 PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 4589999999999999999998853 3348999999999999999997543
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.35 E-value=8.9e-07 Score=78.85 Aligned_cols=66 Identities=27% Similarity=0.423 Sum_probs=57.1
Q ss_pred cCCCCCHHHHHH----HhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLRE----IFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~----~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+..+..+.|++ |||.||.|.+|++. ..+.+|.|+|+|.+.++|-.|+.. ++-++++||++.+...
T Consensus 17 LnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 17 LNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 456677777776 99999999999985 578899999999999999999987 6667899999999864
No 77
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.33 E-value=2.2e-06 Score=85.36 Aligned_cols=73 Identities=26% Similarity=0.248 Sum_probs=56.8
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC----CCCeEEEecCC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL----SNPLLVLPLQP 242 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~----~~pl~v~~~~~ 242 (292)
+.|--......+|++.|.++|++||.|..|.|...+..|+|||+|.+.++|..|+....|.. .++|+|.|..+
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 34433334557999999999999999999988544445899999999999999998644432 36899998764
No 78
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=8.3e-07 Score=85.40 Aligned_cols=66 Identities=36% Similarity=0.505 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCC-----CCCCeEEEecCCC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGN-----LSNPLLVLPLQPA 243 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g~-----~~~pl~v~~~~~~ 243 (292)
+-..|+.++++||++||.|++|.|.. +.++|+|||.|.+.+-|..||....|. -+.||.|.|..+.
T Consensus 133 sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 133 SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 34589999999999999999999853 678999999999999999999874443 4689999998753
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.29 E-value=3.2e-06 Score=76.54 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
.....|++.|+++|+.||+|.+|.|. ++...|+|||+|.+.++|..|+. ++.-+.+.|+.|.+..
T Consensus 13 LS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 13 LSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45569999999999999999999996 35567899999999999999996 5777888999998754
No 80
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.23 E-value=5.8e-06 Score=84.27 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
...++++.|+++|+.||.|.+|.|.. ++.+|||||+|.+.++|..|+.. .+.+.+.+|.|.|.-
T Consensus 213 p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 213 HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 44689999999999999999998852 46799999999999999999975 666678999999854
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.3e-06 Score=91.53 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=49.9
Q ss_pred CCCCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHcc
Q 022762 1 MDVDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (292)
Q Consensus 1 ~~~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (292)
|++..-+-|+||.|+-+- ++.-....||++|+++|.+||||||| +..++|..+++||+.|+
T Consensus 1276 ~~mS~d~A~eiL~i~l~n-~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTN-EEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCC-CCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 455666789999998762 22234478999999999999999986 56789999999999998
No 82
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.23 E-value=3.4e-06 Score=61.18 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEecC---CCcceEEEEecCHHHHHHHHHhhc
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKSS---KKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~~---k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
+...|++.|+++|+.||.|..|.+... ..+|+|||+|.|.++|..|+....
T Consensus 7 p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 7 PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 456899999999999999999998633 358999999999999999998643
No 83
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=77.64 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.....+.|++.|.+||+|+..+|++ ++++|++||+|.+.++|.+|+.+
T Consensus 22 w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 22 WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 3478899999999999999987764 77899999999999999999975
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.21 E-value=2.3e-06 Score=75.51 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=57.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEec
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~ 240 (292)
.+-||-.+...-.|.++|+.+|.+||.|.+|.|+- ...+|||||-|....+|+.|+.+..| +.+.-|.|...
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44555555555689999999999999999999962 56799999999999999999987544 45667777654
No 85
>smart00361 RRM_1 RNA recognition motif.
Probab=98.21 E-value=3.2e-06 Score=62.15 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=39.8
Q ss_pred HHHHHHHhc----ccCCeeEEE--Eec-----CCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 183 AERLREIFS----EFGKVEDVV--IKS-----SKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 183 ~~~L~~~fs----~yG~V~~v~--i~~-----~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
+++|+++|+ +||.|.+|. +.. +..+|+|||+|.+.++|..|+....|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467888888 999999984 322 557999999999999999999976654
No 86
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.18 E-value=4.9e-06 Score=82.91 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=54.8
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh----hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS----VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~----~~g~~~~pl~v~~~~~ 242 (292)
....+|++.|+++|+.||.|.+|.|. +.+|+|||+|.+.++|..|+.. ..-+.+.||.|.|...
T Consensus 10 Lp~~~te~~L~~~f~~fG~V~~v~i~--~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 10 LPQDVVEADLVEALIPFGPVSYVMML--PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEE--CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 45569999999999999999999885 3569999999999999999974 3446789999999754
No 87
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.17 E-value=6.5e-06 Score=83.20 Aligned_cols=67 Identities=25% Similarity=0.331 Sum_probs=57.2
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|+.||.|.+|.|. .+..+|+|||+|.+.++|..|+.. ...+.+.||.|.|...
T Consensus 292 nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 292 NLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 345569999999999999999999875 256799999999999999999975 5566789999998754
No 88
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=4.6e-06 Score=71.92 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=55.8
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC--CCCeEEEecC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL--SNPLLVLPLQ 241 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~--~~pl~v~~~~ 241 (292)
-..+...++.+|..+|+.||+|-+|+|- -...|||||||++.-+|..|+.+..|.- +.-+.|+...
T Consensus 16 GnL~~~a~k~eLE~~F~~yG~lrsvWvA-rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 16 GNLGSRATKRELERAFSKYGPLRSVWVA-RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred ccCCCCcchHHHHHHHHhcCcceeEEEe-ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3355678999999999999999999994 4679999999999999999999877776 5557887654
No 89
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.17 E-value=4.5e-06 Score=84.34 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=55.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
....+|+++|+++|++||.|.+|.|. +++++|+|||+|.+.++|.+|+.. .....++|+.|.|..
T Consensus 8 Lp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 8 LDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 45579999999999999999999884 256789999999999999999975 344678999999975
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=98.16 E-value=7.2e-06 Score=57.73 Aligned_cols=51 Identities=37% Similarity=0.526 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHhhc
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
+..++.+.|+++|..||+|..+.+.. +..+|+|+|+|.+.++|..|+....
T Consensus 8 ~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 8 PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC
Confidence 44689999999999999999998853 3357999999999999999997644
No 91
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.15 E-value=1.1e-05 Score=82.25 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=54.1
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
....++++.|+++|++||+|.+|.|. +++++|||||+|.+.++|..|+.. +.-+.+.+|.|.+.
T Consensus 115 Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 115 ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 55679999999999999999999884 367899999999999999999975 44456778888753
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.14 E-value=1.4e-05 Score=56.52 Aligned_cols=61 Identities=43% Similarity=0.527 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEecC---CCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEE
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKSS---KKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVL 238 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~~---k~~g~A~V~F~~~~~A~~Av~~~~g~--~~~pl~v~ 238 (292)
...++.+.|.++|..||.|..+.+... ...|+|+|+|.+.++|..|+....|. .+.++.|.
T Consensus 8 ~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 8 PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 345899999999999999999998532 34899999999999999999875554 44455544
No 93
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=6.8e-06 Score=76.87 Aligned_cols=77 Identities=30% Similarity=0.364 Sum_probs=56.4
Q ss_pred CCccceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEEe
Q 022762 164 LDKEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLP 239 (292)
Q Consensus 164 ~~~~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~~~g~--~~~pl~v~~ 239 (292)
++..++|-|. +....|-+-+|+.||.+||.|.+|.|+ ...+|||+||+|++.++|++|-....|. -+.-+.|--
T Consensus 93 ~~~pkRLhVS--NIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVS--NIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEee--cCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445566654 345568888999999999999999997 3678999999999999999997654433 333444444
Q ss_pred cCC
Q 022762 240 LQP 242 (292)
Q Consensus 240 ~~~ 242 (292)
...
T Consensus 171 ATa 173 (376)
T KOG0125|consen 171 ATA 173 (376)
T ss_pred cch
Confidence 433
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=5.1e-06 Score=68.96 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=55.1
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.....+++.+.+.|..||+|.+|.+.- +=-+|||+|+|++.+.|..|+.. +..+++.++.|.|.
T Consensus 80 vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 80 VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 334589999999999999999999832 34589999999999999999975 56789999999993
No 95
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.03 E-value=1.4e-05 Score=78.33 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=56.1
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
.....+|++.|.++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.||.|.|..
T Consensus 193 nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 193 NLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3456799999999999999999998852 46789999999999999999975 455678999999954
No 96
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.03 E-value=1.6e-05 Score=78.11 Aligned_cols=66 Identities=27% Similarity=0.279 Sum_probs=56.2
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
..+..++++.|.++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+. ++..+.++||.|.+..
T Consensus 96 nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 96 QLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 3556799999999999999999999852 5679999999999999999996 3666778899988754
No 97
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=9.6e-06 Score=70.61 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=63.1
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~ 241 (292)
-.|-|.+..+++-+..|.+||.+||.|..|.+++ ....+||||+|++.-+|+.||. +.+.+-.+-|.|++..
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3677888888899999999999999999999974 3447899999999999999996 4888899999999864
No 98
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1e-05 Score=74.05 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....|++.|+..|+.||+|..|.| -|.+|||||-|.+.++|..||-. +....+++.+-.|-+.
T Consensus 173 ~~~lte~~mr~~Fs~fG~I~EVRv--Fk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFSPFGPIQEVRV--FKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CccccHHHHHHhcccCCcceEEEE--ecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 346999999999999999999998 47789999999999999999974 6667788988888654
No 99
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=1.2e-05 Score=74.50 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=51.7
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEE
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVL 238 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g~--~~~pl~v~ 238 (292)
..+...+++.|+..|++||+|..|.|+ +++.+|||||||.+.-+...|..+-.|. -+.-+.|.
T Consensus 108 RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 108 RLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred eccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 467789999999999999999999885 4889999999999999999999864333 34444554
No 100
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.98 E-value=2e-05 Score=79.99 Aligned_cols=63 Identities=27% Similarity=0.236 Sum_probs=54.5
Q ss_pred cCCCCCHHHHHHHhccc--CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCCC
Q 022762 177 FGEDYTAERLREIFSEF--GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~y--G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~~ 243 (292)
....+|++.|+++|+.| |.|..|.+. +++|||+|.+.++|..|+.. ...+.+.+|.|.|..|.
T Consensus 241 L~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 241 LMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 34568999999999999 999999773 57999999999999999974 56678899999999763
No 101
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.96 E-value=2.5e-05 Score=77.62 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=55.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
....+|++.|.++|+.||.|..|.|. +++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.+..
T Consensus 303 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 303 LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45679999999999999999998874 256799999999999999999974 566678889999864
No 102
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.93 E-value=4.2e-05 Score=64.09 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=61.0
Q ss_pred CccceEEEEeeec--CCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 165 DKEKVLKVSWEKF--GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 165 ~~~~~lkvKWk~~--~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
+.+.+|.|+|-+. ...++-..+..-++.||+|.+|.+ ++ +-+|+|+|.+..+|=+||.+ ..+-+++-+.-+|..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CG--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cC--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 3456899999663 334555667788899999999998 44 56999999999999999987 667777888888877
Q ss_pred CCc
Q 022762 242 PAV 244 (292)
Q Consensus 242 ~~~ 244 (292)
+.+
T Consensus 161 rFM 163 (166)
T PF15023_consen 161 RFM 163 (166)
T ss_pred ccc
Confidence 543
No 103
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.6e-06 Score=73.43 Aligned_cols=56 Identities=21% Similarity=0.560 Sum_probs=48.4
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHH-HccCc
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYE-ILKDE 67 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~-vL~d~ 67 (292)
+.||.||||..+ |+..+++.+|..++..+|||... +....+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~-----~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEG-----ADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhccccc-----CchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHH
Confidence 468999999998 89999999999999999999875 4556789999999998 76543
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.87 E-value=3.9e-05 Score=67.21 Aligned_cols=65 Identities=32% Similarity=0.382 Sum_probs=57.0
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
.+..+|++.|.++|..||.|..|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.+..
T Consensus 123 L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 123 LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 456799999999999999998888842 57899999999999999999986 567788999999964
No 105
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=4.5e-05 Score=62.85 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.-.+++.|.+||++-|+|..|+|.- ...=|++||+|-+.++|+.|+.+ .+-+-+.|+.+.|-..
T Consensus 46 fyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 46 FYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred eeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 3478999999999999999999942 23469999999999999999996 7778899999999654
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.8e-05 Score=70.52 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~~ 243 (292)
..+|+..|..-|-.||+|.+|.|+ +.+.+|+|||+|.-.++|.+||.+ +..+++..|+|-+..|.
T Consensus 20 deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 20 DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred HHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 358888999999999999999995 378899999999999999999986 77888999999887764
No 107
>PLN03213 repressor of silencing 3; Provisional
Probab=97.78 E-value=9.2e-05 Score=72.72 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCH--HHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATK--SAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~--~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|=-......+++++|..+|+.||.|.+|.|+..+.+|||||+|.+. .++..||.. ++...+..|+|.-..|
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 455555566789999999999999999999997544499999999987 678888874 6667888999986654
No 108
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=6.6e-05 Score=72.83 Aligned_cols=74 Identities=30% Similarity=0.337 Sum_probs=61.8
Q ss_pred ccceEEEEeee-cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 166 KEKVLKVSWEK-FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 166 ~~~~lkvKWk~-~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+.+|||=+-+ ....+|++.|..+|+.||.|+.|+.+ +-||||.|.+.++|..|+.+ .+.+-+.||-|...+|
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 34456666665 44569999999999999999999864 45999999999999999986 6777889999999887
Q ss_pred C
Q 022762 243 A 243 (292)
Q Consensus 243 ~ 243 (292)
.
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 4
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0002 Score=60.65 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=87.1
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCh-hHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRP----DDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~----~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...+||.+||..... .....-+.--|--...+.|||+.. +++ .|.+....|++||.+|.||-+|+.|-..+.
T Consensus 6 ~~~~ff~~Fg~e~~~---~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSF---KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred hHHHHHHHhccccCC---CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356899999876652 355555665788999999999832 112 478889999999999999999999987765
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 022762 79 IKREKQQRQSQQDGKRRKMMSDLEERERAAFAPDPAVKARQEEEKIARQLKEEIERIRAMHENK 142 (292)
Q Consensus 79 ~~~~~~~r~~~~~~kr~~~~~dLe~RE~~~~~~~~~~~~~~~~~~~~~~l~eE~~r~r~~~~~~ 142 (292)
.... -..+....-.-+++-|+.+|. ....+-.....+...+..+++...++.+++..+.+
T Consensus 83 g~e~---~sne~stDpe~Lmevle~~E~-IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk 142 (168)
T KOG3192|consen 83 GQEQ---TSNELSTDPEFLMEVLEYHEA-ISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESK 142 (168)
T ss_pred CCCC---chhhhccCHHHHHHHHHHHHH-HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4222 123344444566777777776 33222222233444455666666777777665544
No 110
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.76 E-value=7.1e-05 Score=76.10 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=51.4
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhhcCCC---CCCeEEEe
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSVCGNL---SNPLLVLP 239 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~~~g~~---~~pl~v~~ 239 (292)
.....++++.|.++|++||.|.+|.|. +++++|+|||+|.+.++|..||....|.. ...|.|.+
T Consensus 65 nLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 65 KIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 456679999999999999999999874 36789999999999999999998754432 34444443
No 111
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=7.5e-05 Score=74.03 Aligned_cols=63 Identities=29% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...+++|..+||.||.|..|+|+. ++..|||||.|....+|..|+.. .....+.|+-|.|.-+
T Consensus 128 ~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 128 KCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355669999999999999999963 66789999999999999999985 5556789999999643
No 112
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.67 E-value=7.6e-05 Score=74.19 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 184 ERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+.|+++|++||.|.+|+|.. +...|+|||+|.+.++|..|+.. +..+.+.+|.+.|..
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 56899999999999999852 23469999999999999999985 455678899988874
No 113
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=0.00016 Score=66.13 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=57.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~~~ 242 (292)
...++|+|.|+.||+.-|+|+++.+.. +.+-||+||.|-+.++|+.||....| +-...++|++..|
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 556799999999999999999998853 56789999999999999999986554 5678899999876
No 114
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00012 Score=67.24 Aligned_cols=64 Identities=27% Similarity=0.345 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEecC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~~ 241 (292)
...++-+.|++-|.+||+|.+..|+ +.|++||+||.|-+..+|++||..+.| +.+..++.-|..
T Consensus 71 s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 71 SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 3458889999999999999998774 388999999999999999999997555 566777888864
No 115
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00021 Score=69.21 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=57.9
Q ss_pred ceEEEEeee----------cCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCC
Q 022762 168 KVLKVSWEK----------FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSN 233 (292)
Q Consensus 168 ~~lkvKWk~----------~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~ 233 (292)
+.++|-|.. .+..+|...|.++|+.||.|.++.+.. ...+|+ ||+|++.++|.+|+.. +--+.++
T Consensus 65 ~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 65 KPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred cEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 457778876 345689999999999999999998853 448999 9999999999999986 4445677
Q ss_pred CeEEEec
Q 022762 234 PLLVLPL 240 (292)
Q Consensus 234 pl~v~~~ 240 (292)
++.|...
T Consensus 144 ki~vg~~ 150 (369)
T KOG0123|consen 144 KIYVGLF 150 (369)
T ss_pred eeEEeec
Confidence 8877543
No 116
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00021 Score=69.13 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=57.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc-----CCCCCCeEEEe
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC-----GNLSNPLLVLP 239 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~-----g~~~~pl~v~~ 239 (292)
.||+--....-.+||.+|+++|.+||.|..|.|+. +-++|++||.|.+.++|..|+++.. --.-.|+.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 46666555666799999999999999999999863 4479999999999999999987622 22346777777
Q ss_pred cC
Q 022762 240 LQ 241 (292)
Q Consensus 240 ~~ 241 (292)
..
T Consensus 114 Ad 115 (510)
T KOG0144|consen 114 AD 115 (510)
T ss_pred cc
Confidence 64
No 117
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.45 E-value=0.00043 Score=68.74 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=57.3
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
...+++++.|+.||..||.|..|.+. .+..+||+||+|.+.+.|.+|+. +++.+.+-+|+|.-+..
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 34579999999999999999999884 26789999999999999999975 57778899999988764
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.42 E-value=0.00037 Score=68.65 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=61.6
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.|-.......++++.|..+|+..|.|.++.+. +++.+||||++|.+.+.|..||.. .....+.+|+|.|...
T Consensus 20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred ceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 34444566789999999999999999999985 378899999999999999999986 6777889999999643
No 119
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=0.00028 Score=64.72 Aligned_cols=53 Identities=25% Similarity=0.517 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNL 231 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g~~ 231 (292)
..-++|+++.+|+.||.|+.+.+.. +.++|+|||-|.+.-+|..||....|.-
T Consensus 29 kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 29 KQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred ccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 3468999999999999999998852 6789999999999999999999866654
No 120
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.0006 Score=62.38 Aligned_cols=62 Identities=27% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.+.++..|-.||+.||.|.+|.|.. .+=+||+||.+.+.++|.+|+.. ++-+.+.-|.|+|-
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4577888999999999999998852 56699999999999999999975 77778888999874
No 121
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00042 Score=67.38 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=54.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCC---CCCCeEEEe
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGN---LSNPLLVLP 239 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g~---~~~pl~v~~ 239 (292)
..-++.+|.|.-+|.+-|.|-.|.|. ++.++|||||.|.+++.|..||....+. .+.+|.|+-
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34579999999999999999998873 4789999999999999999999865555 778888864
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.27 E-value=0.00089 Score=63.33 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC---CCCCCeEEEecCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG---NLSNPLLVLPLQP 242 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g---~~~~pl~v~~~~~ 242 (292)
..+++..|++.|-+||+|..|++. -.+|+|||+|.|..+|+.|....+. .-+.-|.|.|-.+
T Consensus 238 d~v~e~dIrdhFyqyGeirsi~~~--~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 238 DEVLEQDIRDHFYQYGEIRSIRIL--PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cchhHHHHHHHHhhcCCeeeEEee--cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 369999999999999999999984 4567999999999999999875322 1234467788765
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.24 E-value=0.00065 Score=69.90 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=54.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
....+++.+|..+|..||.|++|.++ ..+|+|||++-...+|++|+.+ +++..+.-++|.|.-
T Consensus 429 i~k~v~e~dL~~~feefGeiqSi~li--~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 429 IPKNVTEQDLANLFEEFGEIQSIILI--PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred ccchhhHHHHHHHHHhcccceeEeec--cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 34469999999999999999999984 5689999999999999999986 677777778889953
No 124
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.23 E-value=3.3e-05 Score=67.15 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+...|+.+|.-.||.||.|++|.+. +++++||||..|++.-+-..||.+ +.-..+..++|..+.
T Consensus 44 ~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 44 PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3468999999999999999999985 388999999999999999999987 444567778887653
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.19 E-value=0.00083 Score=59.43 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=54.0
Q ss_pred cCCCCCHHHHHHHhccc-CCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCCC
Q 022762 177 FGEDYTAERLREIFSEF-GKVEDVVIK----SSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~y-G~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~~ 243 (292)
.+.++.+..+..+|..| |.|..+++. +++++|||||+|.+.+-|.-|-. |++=+++.-|.+.++.|.
T Consensus 57 ~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 57 IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 44568888899999999 777777772 37889999999999999998876 466677888888887653
No 126
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.00046 Score=65.71 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=44.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCG 229 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g 229 (292)
.+.+|.|+.-|..||+|.+|-|. +.+.+|||||+|+-.++|..|+....|
T Consensus 124 El~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg 177 (544)
T KOG0124|consen 124 ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG 177 (544)
T ss_pred EechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc
Confidence 47789999999999999999993 378999999999999999999986443
No 127
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.13 E-value=0.00067 Score=59.04 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~ 241 (292)
.....|++.|.+||-+-|+|.+|.|+. .+..|||||+|.+.++|+=|++ +...+.+.||+|.-++
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 344588999999999999999999953 5679999999999999999997 5888999999998765
No 128
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0012 Score=64.04 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...|+..|.++|+.+|+|.+|.|- +..+-|+|+|.|.+..+|+.|+.. ..-+.+.|+.+.|...
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 568999999999999999999882 113889999999999999999974 6667789999999764
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0016 Score=61.86 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=42.0
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG 225 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~ 225 (292)
.|.-.+.++|.-|||.||.|.++.|+. +.+--+|||+|.+.++|+.|.-
T Consensus 247 LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 247 LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHh
Confidence 556588899999999999999988753 4556799999999999999974
No 130
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0015 Score=52.08 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=41.2
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCc
Q 022762 11 VLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDE 67 (292)
Q Consensus 11 iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 67 (292)
||||.++ ++.+.||.|+|++-+..|||+.. .|- .-..|++|+++|...
T Consensus 61 IL~v~~s-----~~k~KikeaHrriM~~NHPD~GG-SPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPS-----LDKDKIKEAHRRIMLANHPDRGG-SPY---LASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCcc-----ccHHHHHHHHHHHHHcCCCcCCC-CHH---HHHHHHHHHHHHhcc
Confidence 9999987 89999999999999999999874 553 345799999999754
No 131
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.79 E-value=0.0043 Score=60.00 Aligned_cols=66 Identities=26% Similarity=0.221 Sum_probs=56.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~~ 243 (292)
....+|.|.|..+|+-||+|..|.|. .+++-.|+|.|++...|..|+.+ +..+.+++|+|.+.+.+
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil-~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKIL-YNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEee-ecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 44569999999999999999999995 44568999999999999999987 44567899999987643
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.67 E-value=0.0084 Score=54.80 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=63.3
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~~ 243 (292)
..+|--.....+++.++|+++|..||.+..|.|. .+.+.|+|-|.|...++|..||.- ++-+-+.||.+.-+.++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3566666677789999999999999999888883 377899999999999999999973 67777888999887664
No 133
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.62 E-value=0.0048 Score=63.09 Aligned_cols=65 Identities=26% Similarity=0.213 Sum_probs=53.3
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCC-------CcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSK-------KKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k-------~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
.+...|.+.|...|+++|.|.++.|...+ +.|+|||+|.+.++|..|+.. +.-+-+.+|.|....
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 34567889999999999999999984211 239999999999999999987 566778888888754
No 134
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=96.55 E-value=0.004 Score=54.28 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=52.6
Q ss_pred ecCCCCCHHHHHHHhcccCCeeE--EEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 176 KFGEDYTAERLREIFSEFGKVED--VVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~--v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
.....+++..|.++||.||.|.. =++. +++.+|+|+|.|++.+++..|+.. +.-+.+.|++|++..
T Consensus 103 NLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 103 NLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred ccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 33446999999999999999877 2332 267899999999999999999986 444567888888864
No 135
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.48 E-value=0.003 Score=62.69 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-------hHHHHHHHHHHHHHHc
Q 022762 23 LTEKEISKAYKWKALELHPDKRPDDP-------DAHDNFQKLKSSYEIL 64 (292)
Q Consensus 23 a~~~eIkkaYrk~al~~HPDk~~~~~-------~a~~~f~~i~~Ay~vL 64 (292)
++.++|||+||+.+|..||||.++.+ -|.+.|..|++|+...
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999987654 2566677777777643
No 136
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.35 E-value=0.0074 Score=42.21 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=33.7
Q ss_pred HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHH
Q 022762 184 ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAAT 224 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av 224 (292)
+.+...|..||+|.++.+ ......++|.|.+..+|+.|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~--~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYV--PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEc--CCCCcEEEEEECCHHHHHhhC
Confidence 456779999999999998 356779999999999999985
No 137
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.24 E-value=0.0064 Score=60.72 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~~~ 242 (292)
.+...+.+.|.+.||.+|+|.+.++.. +.++||+||.|+=.+++..|+..-.+ +-++.|.|.++.+
T Consensus 13 lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 456688899999999999999988753 46799999999999999999987555 7888999998865
No 138
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.011 Score=56.59 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=53.1
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEE
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVL 238 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~ 238 (292)
....+.++++|...|..||+|..+.+- ..+.+||+||+|.+..+-..||. +.+.+.+.=|+|-
T Consensus 217 SvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 217 SVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred ecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 345679999999999999999999884 16689999999999999999986 5777777777764
No 139
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.17 E-value=0.0045 Score=63.27 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...-+...++.||+.||.|.+|.|+. +-.+|+|||+|-+...|.+|+.+ .+-+.+.-|.+.|...
T Consensus 622 pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 622 PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 34467788999999999999999952 22499999999999999999965 5556667789999864
No 140
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.07 E-value=0.026 Score=54.19 Aligned_cols=75 Identities=25% Similarity=0.193 Sum_probs=60.6
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC----CCCCCeEEEecCCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG----NLSNPLLVLPLQPA 243 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g----~~~~pl~v~~~~~~ 243 (292)
+.|.+.--.....+|.|.|.+|...-|.|..|+|- .|.--+|+|||++.+.|.+|-.+..| ..=|.|+|.+.+|+
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf-kkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF-KKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEE-eccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 35666555556679999999999999999999983 45677999999999999999876433 34588999998875
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.06 E-value=0.022 Score=45.52 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=34.1
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.|+-...+...+-+.|.+.|+.||+|.-|-+. +.-..|+|-|.+.++|..|+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--~G~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--RGDTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE----TT-SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEec--CCCCEEEEEECCcchHHHHHHH
Confidence 35555555668899999999999999998884 3345899999999999999986
No 142
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.97 E-value=0.014 Score=54.42 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=48.3
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~--~g~~~~pl~v~~~~ 241 (292)
.....++..|+.+|.+||.|..+-|+ |.||||..++..+|..||.+. +-+-+.-+.|...+
T Consensus 10 Lp~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 10 LPREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred CCcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 34457889999999999999998884 569999999999999999974 44445555666543
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.95 E-value=0.014 Score=58.64 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=46.3
Q ss_pred CCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 181 YTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 181 ~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.-..+|..|||+||.|+...|.+ ...+.|+||++.+...|...|.+ -..+-+.-+.|.-.
T Consensus 417 TRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 417 TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44567999999999998865542 55789999999999999999986 45555555666543
No 144
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=95.87 E-value=0.012 Score=54.21 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=46.4
Q ss_pred CCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEE
Q 022762 180 DYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVL 238 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g~--~~~pl~v~ 238 (292)
.+.+..|..+|-.||.|.+-.|- +..++.|+||.|+|..+|..||....|+ .=+-|+|.
T Consensus 296 EFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 296 EFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred hhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 47889999999999999885541 3668999999999999999999975554 22344444
No 145
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.015 Score=58.43 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=42.4
Q ss_pred CCHHHHHHHhcccCCeeEEEEe-c--CCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 181 YTAERLREIFSEFGKVEDVVIK-S--SKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 181 ~t~~~L~~~fs~yG~V~~v~i~-~--~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
.-...|..+|++||+|.++.++ + ++.+|+.|++|++..+|..||+...|.
T Consensus 76 klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 76 KLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred HHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 3345577999999999999996 2 778999999999999999999975554
No 146
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.67 E-value=0.006 Score=57.73 Aligned_cols=46 Identities=37% Similarity=0.575 Sum_probs=40.5
Q ss_pred CCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh
Q 022762 181 YTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 181 ~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.|++.|+..|++||.|.++++.. +.++|++||+|++.+....++..
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 78999999999999999988852 67899999999999888777765
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.52 E-value=0.012 Score=58.83 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
....++.+.|+.||+.||+|..|.. +..++|..||+|=++-+|+.|++.
T Consensus 83 l~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 83 LPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred cCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHH
Confidence 4456999999999999999999776 677899999999999999999975
No 148
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.0089 Score=51.85 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=55.3
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 7 d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
|++.++|.+..+ ....+.+...|+.+...+|||.....+. +...+..++.||.+|.||-.|..|-..+.
T Consensus 2 ~~~~~~~~~~~f---~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAF---QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHH---HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 567777777653 3456778889999999999999765443 44579999999999999999999987665
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=95.39 E-value=0.023 Score=55.83 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=43.9
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe--c--CCCcceEEEEecCHHHHHHHHHhh
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK--S--SKKKGSALVVMATKSAAGAATGSV 227 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~--~--~k~~g~A~V~F~~~~~A~~Av~~~ 227 (292)
....+.+.+.|.+.|..||+|...-|. + ++..+||||+|.+.+++..|+.+.
T Consensus 295 nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 295 NLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 345678999999999999999997663 3 555699999999999999999874
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.36 E-value=0.029 Score=50.96 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=55.6
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
|.|.....+.+.+.+...|+.+|.|..|.|+. +..+|+|+|+|.+.+..++|+. ++..+.+.++.|+|..
T Consensus 104 v~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 104 VWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred EEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 34444555666666999999999999888753 3468999999999999999998 6777778888888753
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=95.33 E-value=0.11 Score=53.69 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=53.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe---c----CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK---S----SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~---~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~~ 241 (292)
.+..++++.|...|..||+|.+|.|. + ..-+.++||-|.+..+|+.|+.+..| ..+-+|++-|.+
T Consensus 182 lnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 182 LNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred CCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 56679999999999999999999884 1 34588999999999999999987444 456677888853
No 152
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.23 E-value=0.031 Score=52.13 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~ 241 (292)
.-+.+.|+..|.+||+|...-|. ++++||.|.-.++|..|+. ++...-+.||+|....
T Consensus 89 tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 89 TCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred cccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 46778899999999999998873 6799999999999999995 5777889999998654
No 153
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.014 Score=50.56 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=45.5
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--Ch-----hHHHHHHHHHHHHHHc
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD--DP-----DAHDNFQKLKSSYEIL 64 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~--~~-----~a~~~f~~i~~Ay~vL 64 (292)
.|.|.+||+... ....+|+++|+++...+|||+-.+ .| .+.+.++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~-----~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIK-----ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchh-----hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999997 899999999999999999998432 23 3677888999998754
No 154
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.83 E-value=0.11 Score=49.93 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=56.5
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
|..-+.-+.+.++-|.|.+||--||.|..|.+. ..+.|.|+|++.+..+.++||.+ +.-+|+.-|.|.+.+
T Consensus 289 VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFm-kTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 289 VMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFM-KTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred EEEEEeccccccchhhhhhhhhhcCceeeEEEe-ecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 444444455668889999999999999999874 45789999999999999999986 555667777776543
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=94.81 E-value=0.033 Score=50.05 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEec
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPL 240 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~ 240 (292)
.++|++.|.++|-.=|+|..|.|.+ +.+..||+|.|.+..+..-|++ ++..+++.|+.+.+-
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3589999999999999999999964 2233399999999999999986 566778888888764
No 156
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.56 E-value=0.09 Score=51.56 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=53.8
Q ss_pred cCCCCCHHHHHHHhc-ccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFS-EFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs-~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
...+|-=.+|.+||. +-|.|.-|.+. ++|.+|+|+|||++.+.+++|+.. -+.....||.|....
T Consensus 52 Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 52 IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 455666678888884 68999999885 489999999999999999999974 677788999997654
No 157
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.34 E-value=0.025 Score=50.82 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEecC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPLQ 241 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~~ 241 (292)
....+..|..+|..||.|-+|.| +.|++||+|.+.-+|..||....| +...-+.|.|..
T Consensus 11 ~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 11 YRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 44678889999999999999999 478999999999999999975222 122226677765
No 158
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.30 E-value=0.078 Score=52.33 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=56.2
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHH-HHhhcCCCCCCeEEEecCCCccCCC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAA-TGSVCGNLSNPLLVLPLQPAVATQI 248 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~A-v~~~~g~~~~pl~v~~~~~~~~~~~ 248 (292)
|.+.-.+. ++-|-.+|..-|.+||.|.+|-|. -..-.|+|+|.+..+|-.| .-++--+-+.+++|-|..|..-+..
T Consensus 375 l~lek~~~-glnt~a~ln~hfA~fG~i~n~qv~--~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~~tn~ 451 (526)
T KOG2135|consen 375 LALEKSPF-GLNTIADLNPHFAQFGEIENIQVD--YSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSPVTNI 451 (526)
T ss_pred hhhhccCC-CCchHhhhhhhhhhcCcccccccc--CchhhheeeeeccccccchhccccceecCceeEEEEecCCcccCc
Confidence 44444433 347788899999999999999983 2255899999999999444 4457777788999999877433333
Q ss_pred C
Q 022762 249 P 249 (292)
Q Consensus 249 p 249 (292)
|
T Consensus 452 p 452 (526)
T KOG2135|consen 452 P 452 (526)
T ss_pred c
Confidence 3
No 159
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=94.27 E-value=0.048 Score=51.71 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=54.9
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
+.||.-.....++++.+|++.|.+||.|..+++. ..+.+|+++|.|.+.++...++.. -..+-..++.|.-..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 4566555677789999999999999999998874 267899999999999999998864 333333444444333
No 160
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=94.19 E-value=0.054 Score=54.16 Aligned_cols=61 Identities=31% Similarity=0.326 Sum_probs=51.5
Q ss_pred CCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEec
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPL 240 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~ 240 (292)
..+.-+|.++|+.+|.|.+|.|+. ..++|.|+|+|-+..+.-.||. .+.-+.+.|+.|...
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 356778999999999999999863 5679999999999999999885 477788889888753
No 161
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.07 E-value=0.056 Score=48.59 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEE
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVL 238 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~ 238 (292)
..++...|.+.|.+||.+..+++ .+++|||+|.+.++|..|+. ++.++++++|.+.
T Consensus 109 ~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 109 LRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 34777889999999999955544 68899999999999999997 4888899999984
No 162
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.38 E-value=0.28 Score=46.78 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=47.9
Q ss_pred cceEEEEeeecCC--CCC-------HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 167 EKVLKVSWEKFGE--DYT-------AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 167 ~~~lkvKWk~~~~--~~t-------~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
+++|.|+.--... .-+ +++|++=.++||.|..|+|-.....|-+.|.|.|.+.|..+|+...|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 4577777665222 122 244556689999999999954556899999999999999999986664
No 163
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=91.63 E-value=0.33 Score=43.92 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=44.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
.+...|+|.|+.+|+.|--..-+.|........|||+|.+.+-|..|+.+..|.
T Consensus 218 l~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 218 LGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 345699999999999998777676644445668999999999999999887776
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=91.61 E-value=0.12 Score=50.52 Aligned_cols=47 Identities=32% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec-----------CC------CcceEEEEecCHHHHHHHHH
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS-----------SK------KKGSALVVMATKSAAGAATG 225 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~-----------~k------~~g~A~V~F~~~~~A~~Av~ 225 (292)
.+..-+.|.+||+.+|.|.+|.|.. .+ .+-+|+|+|.+.++|..|..
T Consensus 241 ~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 241 LDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 3445599999999999999999821 11 26789999999999999986
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=90.81 E-value=0.58 Score=37.09 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=34.5
Q ss_pred CHHHHHHHhcccCCeeEEE-E----------ecCCCcceEEEEecCHHHHHHHHHh
Q 022762 182 TAERLREIFSEFGKVEDVV-I----------KSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~-i----------~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
..+.+.+.|++||+|.... + +.....+.--|.|++..+|..|+..
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 4566889999999998886 0 0123567899999999999999975
No 166
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=90.19 E-value=0.28 Score=47.77 Aligned_cols=72 Identities=22% Similarity=0.147 Sum_probs=52.8
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEEecC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQ 241 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~----g~~~~pl~v~~~~ 241 (292)
|++--...-..+|-|.|..+||+||.|..|+--.....=+|+|.|.+...|..|-.... -..-|.|++.+..
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 44433334456899999999999999999876333334469999999999988876533 3456888888754
No 167
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.11 E-value=0.39 Score=44.13 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhcCCC
Q 022762 181 YTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVCGNL 231 (292)
Q Consensus 181 ~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~g~~ 231 (292)
.|.++|-..|.+|-.-..-.+. .++++||+||.|.+..++..|+....|..
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 8899999999999866554332 37899999999999999999998876653
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.54 E-value=0.66 Score=42.67 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=48.7
Q ss_pred CccceEEEEeee--------cCCCCCHHHHHHHhcccCCeeEEEEe-c--CCCcceEEEEecCHHHHHHHHHh
Q 022762 165 DKEKVLKVSWEK--------FGEDYTAERLREIFSEFGKVEDVVIK-S--SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 165 ~~~~~lkvKWk~--------~~~~~t~~~L~~~fs~yG~V~~v~i~-~--~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.+.+.|.|.+-. .....+-|.|..-|+.||+|+.-|+. . .+..|-++|+|...-.|..|...
T Consensus 19 ~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 19 PKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred CCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHH
Confidence 344567777665 23458889999999999999996653 2 56788899999999999999875
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.38 E-value=1.1 Score=34.55 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
.+-..+|.+||+.||.|.--.| + -.+|||...+.+.|..|+....
T Consensus 19 eWK~~DI~qlFspfG~I~VsWi-~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 19 EWKTSDIYQLFSPFGQIYVSWI-N---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp T--HHHHHHHCCCCCCEEEEEE-C---TTEEEEEECCCHHHHHHHHHHT
T ss_pred HhhhhhHHHHhccCCcEEEEEE-c---CCcEEEEeecHHHHHHHHHHhc
Confidence 3667889999999999976666 3 3499999999999998887643
No 170
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=88.99 E-value=1.3 Score=34.24 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 184 ERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 184 ~~L~~~fs~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
..|+.|+...| .|..|. .|+|+|-|.+.+.|..|..- +-.-|++-+.|.+.
T Consensus 21 ~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 21 NRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred HHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 44888998887 676663 47999999999999999975 44567888889886
No 171
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=88.40 E-value=0.82 Score=45.99 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHhhcCC--CCCCeEEEec
Q 022762 184 ERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGSVCGN--LSNPLLVLPL 240 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~Av~~~~g~--~~~pl~v~~~ 240 (292)
++++.=+++||.|.+|.|+- .-.-|.-||+|++.++|+.|.....|. .+.....++.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 34566678999999999952 234788999999999999999885553 3344444444
No 172
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=87.44 E-value=1.5 Score=43.78 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=48.5
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEE
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLV 237 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v 237 (292)
....-|+++|.+.|+.- .|.++++. +++..|=|+|||.+.+++.+|++......+++-.-
T Consensus 18 LPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIE 79 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIE 79 (510)
T ss_pred CCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEE
Confidence 34447889999999976 67888875 37889999999999999999999877666666443
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=83.22 E-value=1.6 Score=46.44 Aligned_cols=68 Identities=22% Similarity=0.138 Sum_probs=54.5
Q ss_pred EeeecCCC-CCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh----hcCCCCCCeEEEecCC
Q 022762 173 SWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS----VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 173 KWk~~~~~-~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~----~~g~~~~pl~v~~~~~ 242 (292)
.|....+. .....|...|..||+|..|.+ .+.--||.|.|.+..+|++|+.. -.|.+..+|.|.++.+
T Consensus 458 ~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 458 LQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eccCCCCCCChHHHHHHHhhccCcceeeec--ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 45543333 445668899999999999988 45566999999999999999986 6778889999998765
No 174
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=82.69 E-value=9.3 Score=30.09 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=38.7
Q ss_pred ecCCCCCHHHHHHHhcc--cCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhc
Q 022762 176 KFGEDYTAERLREIFSE--FGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~--yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
..+-.||.+.|.+++.. .|...=+.++ +..+.|||||-|.+..+|..-...-.
T Consensus 8 NIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 8 NIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred cCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 34445999998887755 3555556664 25679999999999999987766533
No 175
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=81.39 E-value=2.8 Score=41.47 Aligned_cols=60 Identities=27% Similarity=0.294 Sum_probs=46.6
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
..+|.|+- .+.+||=..|++-|..||.|.-+.|. .++.+| +|-|.+.+.|+.|+....|.
T Consensus 536 a~qIiirN--lP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs 596 (608)
T KOG4212|consen 536 ACQIIIRN--LPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGS 596 (608)
T ss_pred ccEEEEec--CCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccC
Confidence 33555543 45679999999999999999887763 466666 99999999999999865543
No 176
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=80.55 E-value=3.5 Score=34.12 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=24.6
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 022762 9 YRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRP 45 (292)
Q Consensus 9 Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~ 45 (292)
..||||++. ++.++|.+.|..|-...+|++..
T Consensus 61 ~~ILnv~~~-----~~~eeI~k~y~~Lf~~Nd~~kGG 92 (127)
T PF03656_consen 61 RQILNVKEE-----LSREEIQKRYKHLFKANDPSKGG 92 (127)
T ss_dssp HHHHT--G-------SHHHHHHHHHHHHHHT-CCCTS
T ss_pred HHHcCCCCc-----cCHHHHHHHHHHHHhccCCCcCC
Confidence 469999996 89999999999999999999864
No 177
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=80.49 E-value=2.4 Score=40.63 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHhcccCCeeEEEEec-----CCCcceE--EEEecCHHHHHHHHHhhcC--CCCCCeEEE
Q 022762 187 REIFSEFGKVEDVVIKS-----SKKKGSA--LVVMATKSAAGAATGSVCG--NLSNPLLVL 238 (292)
Q Consensus 187 ~~~fs~yG~V~~v~i~~-----~k~~g~A--~V~F~~~~~A~~Av~~~~g--~~~~pl~v~ 238 (292)
.++|.+||.|..|+|.. ....+-+ +|+|.+.++|..+|..-.| +.+.-|+.+
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkat 198 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKAT 198 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeee
Confidence 48999999999999931 0112223 8999999999999986333 333344444
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=79.44 E-value=1.3 Score=40.75 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEEec
Q 022762 186 LREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPL 240 (292)
Q Consensus 186 L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~--~g~~~~pl~v~~~ 240 (292)
+.++-.+||.|+.++|-+ .--.|-++|.|...++|+.|+... .=+.+.|+...+.
T Consensus 86 f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 86 FTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 344445999999997721 346899999999999999999863 3345667766653
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.29 E-value=3.7 Score=38.64 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHhhcCCC
Q 022762 184 ERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGSVCGNL 231 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~~~~g~~ 231 (292)
+.+.+-+.+||.|.+|+|-. ...--.-||+|...++|..|+-...|.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 34567789999999999831 3345578999999999999998766653
No 180
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.95 E-value=3.1 Score=36.52 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=39.9
Q ss_pred CHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEEecCC
Q 022762 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQP 242 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~----g~~~~pl~v~~~~~ 242 (292)
+.+.|+.+|+.||++..++.. ++-+..+|+|.+.++|..|..... -..++.|.+-+..+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L--~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL--KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE--TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457799999999999988774 677899999999999999987633 33455677766543
No 181
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=78.14 E-value=5.9 Score=35.78 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=52.5
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCC---CCCeEEEec
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNL---SNPLLVLPL 240 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~---~~pl~v~~~ 240 (292)
.++|.+.|... ..+.+.|..+|..|+--..|.+. ...+|.|||+|.+...|..|.....|.. .++|.|.+.
T Consensus 146 n~ilf~~niP~--es~~e~l~~lf~qf~g~keir~i-~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 146 NNILFLTNIPS--ESESEMLSDLFEQFPGFKEIRLI-PPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ceEEEEecCCc--chhHHHHHHHHhhCcccceeEec-cCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 34677777643 46788899999999998888884 4578999999999998888877644332 555665543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=77.74 E-value=4.2 Score=34.49 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=46.8
Q ss_pred cceEEEEeee---c-CCCCCHH---HHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEE
Q 022762 167 EKVLKVSWEK---F-GEDYTAE---RLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVL 238 (292)
Q Consensus 167 ~~~lkvKWk~---~-~~~~t~~---~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~ 238 (292)
+.+|.|.-.. . +..|+++ .|.+.|+.||.|.-|.+. .+.-+|+|.+..+|.+|+.- +....+..|+|.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv----~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV----GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIR 102 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE----TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe----CCeEEEEECccHHHHHHHccCCcEECCEEEEEE
Confidence 4577777766 1 2235543 466788899998877764 25799999999999999963 555566777776
Q ss_pred e
Q 022762 239 P 239 (292)
Q Consensus 239 ~ 239 (292)
.
T Consensus 103 L 103 (146)
T PF08952_consen 103 L 103 (146)
T ss_dssp E
T ss_pred e
Confidence 4
No 183
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=76.80 E-value=1.9 Score=40.48 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
...++.+.|...|..+|.|..|.+.. +..+|+|+|.|.+...+.+|+.. ..-.++.|+.+..-.
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 34689999999999999999999853 66799999999999999999983 333345566666544
No 184
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.40 E-value=3.2 Score=44.02 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=41.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.=|++.|+.||+++|.|.++.+.+ ++.+|.|+|.|.+...|..++..
T Consensus 747 ~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 747 QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 468899999999999999987643 78899999999999999888864
No 185
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=74.28 E-value=8 Score=38.74 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=42.6
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEE-Ee---cCCCcceEEEEecCHHHHHHHHHh
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVV-IK---SSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~-i~---~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
|+..-.....|+++|.+.|+---.|.+.+ ++ .++.-|=|||.|++.+.|+.|++.
T Consensus 106 VRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 106 VRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred EEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 33344556789999999999876666633 22 267889999999999999999975
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=73.45 E-value=14 Score=26.79 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHhccc----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 022762 179 EDYTAERLREIFSEF----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 179 ~~~t~~~L~~~fs~y----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
..++-+++..+|..| |+. .|.-+++. +|-|+|.+...|..|+.+
T Consensus 14 d~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt---ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 14 DELSTDDIKAYFSEYFDEEGPF-RIEWIDDT---SCNVVFKDEETAARALVA 61 (62)
T ss_pred CCCCHHHHHHHHHHhcccCCCc-eEEEecCC---cEEEEECCHHHHHHHHHc
Confidence 348899999999999 654 44433333 899999999999999864
No 187
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=73.44 E-value=9.2 Score=34.84 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=47.4
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe-cCCC----cceEEEEecCHHHHHHHHHhhcCCCCC-----CeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK-SSKK----KGSALVVMATKSAAGAATGSVCGNLSN-----PLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~-~~k~----~g~A~V~F~~~~~A~~Av~~~~g~~~~-----pl~v~~~~ 241 (292)
...++-.-.|+.||..|---+...++ +++. +-.|||+|.+...|..|++...|..=. -|++...+
T Consensus 42 LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 42 LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAK 116 (284)
T ss_pred CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehh
Confidence 34467788899999999877777665 3333 369999999999999999886665322 35555543
No 188
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.38 E-value=3.5 Score=43.75 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=49.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEEecCC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQP 242 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~----g~~~~pl~v~~~~~ 242 (292)
+.+...|-.+|+.||.|.+.... +.-..|+|+|.+.+.|..|..+.. ...+.|-+|.+.++
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtl--r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTL--RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheec--ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 57778899999999999999874 334589999999999999988733 34567888887654
No 189
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=72.08 E-value=4.4 Score=38.38 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----ChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 23 LTEKEISKAYKWKALELHPDKRPD----DPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 23 a~~~eIkkaYrk~al~~HPDk~~~----~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
++..+|..+|+..++..||++... .-...+.|++|..||.||.+...|..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 678899999999999999998741 1235678999999999999866656666554
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.86 E-value=7.7 Score=36.70 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=37.4
Q ss_pred CHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 022762 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
....|..+|++||.|+.+|.. .+-..-.|-|.+..+|.+|+..
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh
Confidence 345688999999999999983 5677999999999999999976
No 191
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.28 E-value=7.3 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.3
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKAL 37 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al 37 (292)
.+-|.+|||+++ .++..|-.+|.....
T Consensus 5 ~~Ay~~Lgi~~~-----~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDED-----TDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCC-----CCHHHHHHHHHHHHH
Confidence 356999999887 899999999998776
No 192
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=67.33 E-value=13 Score=30.11 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCChh
Q 022762 23 LTEKEISKAYKWKALELHPDKRPDDPD 49 (292)
Q Consensus 23 a~~~eIkkaYrk~al~~HPDk~~~~~~ 49 (292)
.+..+++.|.|..-+++|||-...+|.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~ 32 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPE 32 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChH
Confidence 678899999999999999998776664
No 193
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.83 E-value=29 Score=36.98 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=5.8
Q ss_pred cCCeeEEEE
Q 022762 193 FGKVEDVVI 201 (292)
Q Consensus 193 yG~V~~v~i 201 (292)
-|.|.+|.+
T Consensus 457 s~kl~Dvr~ 465 (1118)
T KOG1029|consen 457 SGKLQDVRV 465 (1118)
T ss_pred hhhhhhhee
Confidence 466777666
No 194
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=64.76 E-value=6 Score=39.95 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
...+++.+.++...||++....+.. +.++|+||.+|-+..-...|+.. +..+.+++|.|...
T Consensus 299 ~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 299 LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4589999999999999999976532 56899999999999999888875 44456788888753
No 195
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.29 E-value=13 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=23.9
Q ss_pred HHHHHHhcccCCeeEEEEe---cCCCcceEEEEecC
Q 022762 184 ERLREIFSEFGKVEDVVIK---SSKKKGSALVVMAT 216 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~ 216 (292)
..||+.||..|+|.-+.+. ++...-++=|+|++
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~eD 44 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVMED 44 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEeC
Confidence 4689999999999999984 23444455566654
No 196
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=62.88 E-value=6.1 Score=36.52 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=40.2
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---C-------------CCcceEEEEecCHHHHHHHHHh
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---S-------------KKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~-------------k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
...+..|+...|++||+.||.|..|.+-. + ..+.-+.|+|.+...|.....-
T Consensus 80 S~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 80 SNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred ccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 33566799999999999999999999931 1 1244578999999998776543
No 197
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=57.33 E-value=32 Score=33.78 Aligned_cols=63 Identities=27% Similarity=0.260 Sum_probs=47.5
Q ss_pred ccceEEEEeeecCCCCCHHHHHHHhccc----CCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhhc
Q 022762 166 KEKVLKVSWEKFGEDYTAERLREIFSEF----GKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 166 ~~~~lkvKWk~~~~~~t~~~L~~~fs~y----G~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
+.+.+.|+......+-++.++.++|..- |.++.|... +++-.|-|||.|+..+.|..|+..+.
T Consensus 158 k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 158 KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 3557888888877788899999998632 234444443 47779999999999999999987533
No 198
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=57.24 E-value=13 Score=35.70 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=51.5
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeE--------EEE----ecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeE
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVED--------VVI----KSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLL 236 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~--------v~i----~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~ 236 (292)
..-|-+. ...+.+.|...|.+-|.|.. |.| .+...+|.|.|.|.+..+|..||.. ...+..|+++
T Consensus 69 i~v~g~~-d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ik 147 (351)
T KOG1995|consen 69 IFVWGCP-DSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIK 147 (351)
T ss_pred ceeeccC-ccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCch
Confidence 3456654 34888889899888777653 111 1255699999999999999999974 4445559999
Q ss_pred EEecCC
Q 022762 237 VLPLQP 242 (292)
Q Consensus 237 v~~~~~ 242 (292)
|+.+..
T Consensus 148 vs~a~~ 153 (351)
T KOG1995|consen 148 VSLAER 153 (351)
T ss_pred hhhhhh
Confidence 988753
No 199
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=55.74 E-value=31 Score=33.31 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=51.8
Q ss_pred cCCCCCHHHHHHHhcccCCeeE--------EEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVED--------VVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~--------v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.+.++|.+.+.++|+++|.|.. |.+- .++-+|=|+|.|--.++...|+.. +..+.++-|+|.-+
T Consensus 142 LP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 142 LPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred CCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 5667999999999999998754 2221 266799999999999999999985 66677888988865
No 200
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=53.63 E-value=18 Score=35.55 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=50.4
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe-c------CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK-S------SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~-~------~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
.....|.|++++||...|.|..+-+- + .--...|||-|.+...+.-|-. ..+-+.++.|.|.+..
T Consensus 15 ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 15 ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred cCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 44568999999999999999998762 1 2236689999999988877743 3677788888888754
No 201
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.98 E-value=17 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.2
Q ss_pred eEEEEeee---c--CCCCCHHHHHHHhcccCCeeEEEEe
Q 022762 169 VLKVSWEK---F--GEDYTAERLREIFSEFGKVEDVVIK 202 (292)
Q Consensus 169 ~lkvKWk~---~--~~~~t~~~L~~~fs~yG~V~~v~i~ 202 (292)
.|-+||=+ + +..-+++.|+..|..||.|-+|-|+
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 57889998 2 2347889999999999999999884
No 202
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.97 E-value=13 Score=30.14 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHH-HHHH
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAA-GAAT 224 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A-~~Av 224 (292)
.+.+...|.+.|+.|+++....+-. ....|+|+|+|.+.-+. .+|+
T Consensus 27 ~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 27 VGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp E---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred eccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 3578899999999999987555422 44589999999876544 4444
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.36 E-value=17 Score=34.66 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCHHHHH--HHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHh
Q 022762 181 YTAERLR--EIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 181 ~t~~~L~--~~fs~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
-+++.|. +.|.+||.|..|++.. .....++.|+|...++|..||..
T Consensus 90 ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 90 ADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred cchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 5566664 6999999999999832 12245699999999999999875
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.54 E-value=1.1e+02 Score=28.96 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEec-----------CCCcceEEEEecCHHHHHHHHHh--------hcCCCCCCeEEEe
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKS-----------SKKKGSALVVMATKSAAGAATGS--------VCGNLSNPLLVLP 239 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~-----------~k~~g~A~V~F~~~~~A~~Av~~--------~~g~~~~pl~v~~ 239 (292)
..++=-.+..-|-+||+|++|.+.. .+...+.++-|-+.+.|..=.++ -..+-+.-|.+.+
T Consensus 25 ~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsF 104 (309)
T PF10567_consen 25 NSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSF 104 (309)
T ss_pred ccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEE
Confidence 4577777889999999999999853 23468999999999999554432 6678888999998
Q ss_pred cC
Q 022762 240 LQ 241 (292)
Q Consensus 240 ~~ 241 (292)
+.
T Consensus 105 V~ 106 (309)
T PF10567_consen 105 VS 106 (309)
T ss_pred EE
Confidence 64
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=40.27 E-value=1.1e+02 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN 230 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~ 230 (292)
.+.+..+++..+.+|+-.. |.. .+.|+ +|+|.+..+|++...++.|.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-IRD---DRTGF-YIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CCccHHHHHHHHhcCCcce-EEe---cCCEE-EEEECChHHHHHHHHhcCCC
Confidence 4588999999999998653 333 34454 78999999999999887765
No 206
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.11 E-value=53 Score=30.56 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.2
Q ss_pred EEEEecCHHHHHHHHHhhcCCCCCCeEEEec
Q 022762 210 ALVVMATKSAAGAATGSVCGNLSNPLLVLPL 240 (292)
Q Consensus 210 A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~ 240 (292)
|||+|.+..+|..|.+.......+.+.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeC
Confidence 7999999999999999766666667766654
No 207
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=32.98 E-value=21 Score=36.83 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=42.2
Q ss_pred CCCHHHHHHHhc-ccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC---CCCCeEE
Q 022762 180 DYTAERLREIFS-EFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN---LSNPLLV 237 (292)
Q Consensus 180 ~~t~~~L~~~fs-~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~---~~~pl~v 237 (292)
.||.-.|+.++. .-|.|...+| ++-+.-|||.|.+.+.|.+-..+..|. .+||=.+
T Consensus 455 PFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 455 PFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred cchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 499999999999 5667878877 556778999999999997766554443 4566433
No 208
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=32.01 E-value=66 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHc
Q 022762 22 KLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEIL 64 (292)
Q Consensus 22 ~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL 64 (292)
+|+.+||..|+.++..+|- +|+ ..-..|-.||+.+
T Consensus 3 ~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~I 37 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAI 37 (194)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHH
Confidence 4899999999999999982 333 2334555555443
No 209
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=31.96 E-value=13 Score=39.73 Aligned_cols=47 Identities=34% Similarity=0.388 Sum_probs=39.3
Q ss_pred CCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh
Q 022762 180 DYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
...+..|...|+.||.|..|-+. .++-+|.|+|+|...+++..||.-
T Consensus 678 ~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 678 KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 46777899999999988887652 366799999999999999999974
No 210
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=31.76 E-value=54 Score=28.32 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHhcccCCeeE
Q 022762 178 GEDYTAERLREIFSEFGKVED 198 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~ 198 (292)
+..|+.+.|..++.+||+|--
T Consensus 93 ~~~~t~e~~~~LL~~yGPLwv 113 (166)
T PF12385_consen 93 NASYTAEGLANLLREYGPLWV 113 (166)
T ss_pred ccccCHHHHHHHHHHcCCeEE
Confidence 346999999999999999853
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=1.9e+02 Score=30.02 Aligned_cols=37 Identities=16% Similarity=-0.042 Sum_probs=29.2
Q ss_pred cceEEEEecCHHHHHHHHHh----hcCCCCCCeEEEecCCC
Q 022762 207 KGSALVVMATKSAAGAATGS----VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 207 ~g~A~V~F~~~~~A~~Av~~----~~g~~~~pl~v~~~~~~ 243 (292)
+=||+|+|.++..|...... +++..+|-|-+-|+.+.
T Consensus 268 YYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 268 YYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred eEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 55899999999999887764 67777887777777543
No 212
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=30.12 E-value=77 Score=33.56 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=38.7
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeE-EEEecCCCcceEEEEecCHHHHHHHHHhhcC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVED-VVIKSSKKKGSALVVMATKSAAGAATGSVCG 229 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~-v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g 229 (292)
|.|+.....-.-...+|+.+||-.-.-+. |.|+ +..-|-|||.|+|.++|..|+....+
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGgVHII-GGe~GeaFI~FsTDeDARlaM~kdr~ 62 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGGVHII-GGEEGEAFIGFSTDEDARLAMTKDRL 62 (944)
T ss_pred eEEEecCCcccccchHHHHhhcccccCCCceEEe-cccccceEEEecccchhhhhhhhccc
Confidence 34454443333445679999986532222 4443 56689999999999999999865433
No 213
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=29.82 E-value=1.1e+02 Score=24.03 Aligned_cols=50 Identities=34% Similarity=0.418 Sum_probs=37.7
Q ss_pred EEeee-cCCCCCHHHHHHHhcccCCeeEEEEecCC--------------CcceEEEEecCHHHHH
Q 022762 172 VSWEK-FGEDYTAERLREIFSEFGKVEDVVIKSSK--------------KKGSALVVMATKSAAG 221 (292)
Q Consensus 172 vKWk~-~~~~~t~~~L~~~fs~yG~V~~v~i~~~k--------------~~g~A~V~F~~~~~A~ 221 (292)
..|+. ....++.++|..++...+.++-|+|.+++ ++|..+.++.|..||.
T Consensus 29 ~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~ 93 (110)
T PF04430_consen 29 RDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACR 93 (110)
T ss_dssp EEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHH
T ss_pred cCcCCCCcccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHH
Confidence 78975 56679999999999999999888885432 5888888888887763
No 214
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.25 E-value=1.2e+02 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=28.6
Q ss_pred HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh
Q 022762 184 ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 184 ~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
..+.+++..+| +....|..+...++.|+.|.+.+.+..+...
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~ 78 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEA 78 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHH
Confidence 45778889999 6666663233366777777788887776654
No 215
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=27.11 E-value=1.3e+02 Score=30.49 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=49.2
Q ss_pred cCCCCCHHHHHHHhc-ccCCeeEEEEecC----CCcceEEEEecCHHHHHHHHHh-----hcCCCCCCeEEEe
Q 022762 177 FGEDYTAERLREIFS-EFGKVEDVVIKSS----KKKGSALVVMATKSAAGAATGS-----VCGNLSNPLLVLP 239 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs-~yG~V~~v~i~~~----k~~g~A~V~F~~~~~A~~Av~~-----~~g~~~~pl~v~~ 239 (292)
.....+...|-.||. -||-|.=|-|-.+ =-+|.|-|+|.+..+=.+||.+ ..+.+++-..|.+
T Consensus 378 vprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkP 450 (520)
T KOG0129|consen 378 LPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKP 450 (520)
T ss_pred CCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecc
Confidence 344689999999999 7999988888433 1489999999999999999986 5566666444444
No 216
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=24.58 E-value=1.5e+02 Score=31.60 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=43.5
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHHhhcC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATGSVCG 229 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~Av~~~~g 229 (292)
|+-..-....+-++|.++|+-|-.+-+ |.+. .+.-.|-|.|-|.+.+.|..|+....+
T Consensus 870 ~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~ 931 (944)
T KOG4307|consen 870 LSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDG 931 (944)
T ss_pred EEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhcccc
Confidence 333334456888999999999987765 4443 256789999999999999999976443
No 217
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=24.48 E-value=2.5e+02 Score=24.78 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh-----hcCCCCCCeEEE
Q 022762 181 YTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS-----VCGNLSNPLLVL 238 (292)
Q Consensus 181 ~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~-----~~g~~~~pl~v~ 238 (292)
.+.+...++...++.-. |||+ ++-..|.++++..|.++|..|+.. .+|..+.++.|+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 35666666666666433 7776 455677889999999999999975 345566777665
No 218
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=23.44 E-value=3.5e+02 Score=22.59 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred eEEEEeeecC-CCCCHHHHHH-HhcccC--CeeEEEEec-------CCCcceEEEEecCHHHHH
Q 022762 169 VLKVSWEKFG-EDYTAERLRE-IFSEFG--KVEDVVIKS-------SKKKGSALVVMATKSAAG 221 (292)
Q Consensus 169 ~lkvKWk~~~-~~~t~~~L~~-~fs~yG--~V~~v~i~~-------~k~~g~A~V~F~~~~~A~ 221 (292)
.+.+.+...+ ...+...|++ |-..|+ +...|+|-. +.+.|+|.| |.|.++|.
T Consensus 23 E~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 23 QFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred EEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 4777777755 5788888876 556688 556666622 567888876 56666543
No 219
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.91 E-value=99 Score=18.70 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 022762 24 TEKEISKAYKWKALELHP 41 (292)
Q Consensus 24 ~~~eIkkaYrk~al~~HP 41 (292)
..++.+.+.|+.||.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788899999999993
No 220
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=21.66 E-value=1.5e+02 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.9
Q ss_pred cChHhHHHHHHHHHHhHHHH
Q 022762 266 AGYQAHEDAILEKLREKAKE 285 (292)
Q Consensus 266 ~s~~d~E~~vl~rlr~a~er 285 (292)
.|+.|+=.+||++|.+++.+
T Consensus 14 lsDkdLvesVlr~lseaa~k 33 (109)
T PF10921_consen 14 LSDKDLVESVLRELSEAADK 33 (109)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 48999999999999999864
No 221
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=20.82 E-value=74 Score=23.24 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=12.3
Q ss_pred cCCCCCHHHHHHHhccc
Q 022762 177 FGEDYTAERLREIFSEF 193 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~y 193 (292)
.|...+++.|-.||++|
T Consensus 56 tG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 56 TGEVVTEDILDNIFSNF 72 (73)
T ss_dssp CTSS--HHHHHHHHCTS
T ss_pred hCCCChHHHHHHHHHhh
Confidence 34568889999999998
Done!