Query 022762
Match_columns 292
No_of_seqs 320 out of 2040
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 4.8E-20 1.7E-24 138.4 6.1 70 3-77 4-73 (79)
2 2yua_A Williams-beuren syndrom 99.8 6.3E-20 2.1E-24 143.9 6.5 71 3-78 14-84 (99)
3 2ctq_A DNAJ homolog subfamily 99.8 1.3E-19 4.4E-24 145.2 7.6 70 4-78 18-87 (112)
4 1hdj_A Human HSP40, HDJ-1; mol 99.8 1.2E-19 4.1E-24 135.7 6.7 68 5-78 2-69 (77)
5 1wjz_A 1700030A21RIK protein; 99.8 9.8E-20 3.4E-24 141.0 5.4 71 3-78 13-89 (94)
6 2ctw_A DNAJ homolog subfamily 99.8 4E-19 1.4E-23 141.7 8.3 72 3-79 14-85 (109)
7 2cug_A Mkiaa0962 protein; DNAJ 99.8 3.6E-19 1.2E-23 136.6 7.1 69 3-77 14-82 (88)
8 2ej7_A HCG3 gene; HCG3 protein 99.8 3.4E-19 1.2E-23 134.7 6.1 69 4-77 7-76 (82)
9 2ctp_A DNAJ homolog subfamily 99.8 3.1E-19 1.1E-23 133.8 5.5 68 4-77 5-72 (78)
10 2ctr_A DNAJ homolog subfamily 99.8 5.2E-19 1.8E-23 135.7 6.8 70 3-78 4-73 (88)
11 2och_A Hypothetical protein DN 99.8 5.4E-19 1.8E-23 130.9 6.3 67 3-77 5-71 (73)
12 1bq0_A DNAJ, HSP40; chaperone, 99.7 2.5E-19 8.6E-24 141.4 3.1 69 5-78 2-70 (103)
13 2lgw_A DNAJ homolog subfamily 99.7 1.7E-18 6E-23 135.8 7.2 68 6-78 2-70 (99)
14 2dmx_A DNAJ homolog subfamily 99.7 1.1E-18 3.8E-23 134.8 5.9 69 4-77 7-76 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.7 2.1E-18 7.1E-23 133.4 7.2 69 3-79 5-73 (92)
16 3hho_A CO-chaperone protein HS 99.7 2.1E-18 7.3E-23 148.4 6.6 98 4-106 2-104 (174)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 2.7E-18 9.2E-23 136.7 5.6 70 4-78 13-86 (109)
18 1fpo_A HSC20, chaperone protei 99.7 3.6E-18 1.2E-22 146.6 6.3 96 6-106 1-101 (171)
19 2l6l_A DNAJ homolog subfamily 99.7 1.4E-17 4.9E-22 140.3 8.2 72 3-79 7-84 (155)
20 2ys8_A RAB-related GTP-binding 99.7 7.3E-18 2.5E-22 129.9 4.4 63 4-72 25-87 (90)
21 3apq_A DNAJ homolog subfamily 99.7 1.3E-17 4.6E-22 145.3 6.0 68 6-78 2-69 (210)
22 3bvo_A CO-chaperone protein HS 99.6 1.5E-16 5.1E-21 140.4 7.4 97 5-106 42-143 (207)
23 1iur_A KIAA0730 protein; DNAJ 99.6 7.5E-17 2.6E-21 123.9 3.1 63 4-71 14-77 (88)
24 2d9o_A DNAJ (HSP40) homolog, s 99.6 3E-15 1E-19 117.5 12.0 76 166-242 9-89 (100)
25 1n4c_A Auxilin; four helix bun 99.6 9.7E-17 3.3E-21 138.6 3.7 65 4-73 115-182 (182)
26 2qwo_B Putative tyrosine-prote 99.6 9.4E-17 3.2E-21 124.3 2.9 56 6-66 33-91 (92)
27 3uo3_A J-type CO-chaperone JAC 99.6 7.1E-16 2.4E-20 133.4 8.5 97 4-107 9-114 (181)
28 3lz8_A Putative chaperone DNAJ 99.6 8.4E-17 2.9E-21 151.2 0.0 68 5-78 27-94 (329)
29 1gh6_A Large T antigen; tumor 99.6 5.8E-17 2E-21 130.3 -1.5 62 5-75 7-70 (114)
30 3ag7_A Putative uncharacterize 99.6 4.4E-16 1.5E-20 123.6 3.2 60 3-68 38-104 (106)
31 2pf4_E Small T antigen; PP2A, 99.5 3.1E-16 1.1E-20 134.5 -1.1 64 6-78 11-76 (174)
32 1faf_A Large T antigen; J doma 99.5 1.6E-15 5.5E-20 114.1 2.7 61 6-73 11-71 (79)
33 2guz_A Mitochondrial import in 99.5 4.1E-15 1.4E-19 109.6 2.8 57 5-70 13-70 (71)
34 3apo_A DNAJ homolog subfamily 99.4 5.8E-15 2E-19 151.6 -0.9 70 4-78 19-88 (780)
35 4fxv_A ELAV-like protein 1; RN 99.1 1.5E-10 5.2E-15 89.7 6.6 67 176-242 26-98 (99)
36 1sjr_A Polypyrimidine tract-bi 99.1 6.2E-10 2.1E-14 94.6 10.6 76 168-243 45-124 (164)
37 2cq1_A PTB-like protein L; RRM 99.1 1E-09 3.5E-14 85.7 11.0 71 168-242 16-90 (101)
38 3r27_A HnRNP L, heterogeneous 99.1 3.7E-10 1.3E-14 88.4 8.2 71 168-242 22-96 (100)
39 1sjq_A Polypyrimidine tract-bi 99.1 2.6E-10 9.1E-15 90.0 7.0 66 175-242 22-91 (105)
40 1wex_A Hypothetical protein (r 99.0 1.6E-09 5.4E-14 85.0 10.9 71 168-242 16-90 (104)
41 2dnz_A Probable RNA-binding pr 99.0 3E-09 1E-13 80.5 11.8 72 169-242 7-84 (95)
42 1x4d_A Matrin 3; structural ge 99.0 5.7E-10 1.9E-14 87.5 7.5 66 175-242 21-91 (102)
43 2cq2_A Hypothetical protein LO 99.0 8.4E-10 2.9E-14 88.4 8.6 73 168-242 26-105 (114)
44 3zzy_A Polypyrimidine tract-bi 99.0 5.8E-10 2E-14 91.3 7.6 74 168-242 27-105 (130)
45 2ad9_A Polypyrimidine tract-bi 99.0 8.4E-10 2.9E-14 89.0 8.0 71 168-242 32-106 (119)
46 2dgo_A Cytotoxic granule-assoc 99.0 4.7E-09 1.6E-13 82.5 12.1 71 172-242 18-94 (115)
47 2cqg_A TDP-43, TAR DNA-binding 99.0 2.1E-09 7.1E-14 82.9 9.6 73 168-242 16-92 (103)
48 1why_A Hypothetical protein ri 99.0 2.2E-09 7.7E-14 81.9 9.4 71 168-242 18-92 (97)
49 2a3j_A U1 small nuclear ribonu 99.0 1.3E-09 4.3E-14 88.7 8.4 73 168-242 30-109 (127)
50 2d9p_A Polyadenylate-binding p 99.0 3.6E-09 1.2E-13 81.6 10.6 72 169-242 17-92 (103)
51 2hvz_A Splicing factor, argini 99.0 4.2E-09 1.4E-13 80.8 10.9 66 177-243 8-75 (101)
52 1whx_A Hypothetical protein ri 99.0 2.4E-09 8.1E-14 84.4 9.7 67 174-242 15-83 (111)
53 2dgs_A DAZ-associated protein 99.0 5.7E-09 2E-13 79.8 11.6 73 168-242 11-88 (99)
54 2e5i_A Heterogeneous nuclear r 99.0 4E-09 1.4E-13 85.6 11.1 74 167-242 23-101 (124)
55 2dhg_A TRNA selenocysteine ass 99.0 3.5E-09 1.2E-13 81.6 10.2 72 169-242 11-89 (104)
56 1x4f_A Matrin 3; structural ge 99.0 1.2E-09 4.1E-14 87.2 7.3 70 169-242 27-101 (112)
57 2lxi_A RNA-binding protein 10; 99.0 4.8E-10 1.7E-14 85.3 4.8 66 177-242 9-82 (91)
58 1whw_A Hypothetical protein ri 99.0 4.8E-09 1.7E-13 80.1 10.5 73 168-242 9-87 (99)
59 2dgp_A Bruno-like 4, RNA bindi 99.0 8.7E-09 3E-13 79.6 11.8 72 169-242 15-95 (106)
60 2cq3_A RNA-binding protein 9; 98.9 7.5E-09 2.6E-13 79.7 11.4 72 169-242 17-92 (103)
61 2dnh_A Bruno-like 5, RNA bindi 98.9 6E-09 2E-13 80.4 10.8 68 175-242 21-96 (105)
62 2cpf_A RNA binding motif prote 98.9 1.7E-09 5.8E-14 82.5 7.6 72 169-242 7-87 (98)
63 2cqi_A Nucleolysin TIAR; RNA r 98.9 3.8E-09 1.3E-13 81.4 9.5 68 175-242 21-92 (103)
64 1x5s_A Cold-inducible RNA-bind 98.9 5.7E-09 1.9E-13 80.1 10.2 73 168-242 13-91 (102)
65 2dnq_A RNA-binding protein 4B; 98.9 8.9E-09 3E-13 77.4 10.9 69 168-242 9-79 (90)
66 1x5p_A Negative elongation fac 98.9 2.2E-09 7.5E-14 82.1 7.6 69 168-242 16-86 (97)
67 4f25_A Polyadenylate-binding p 98.9 1.3E-09 4.6E-14 86.3 6.6 66 177-242 13-82 (115)
68 1s79_A Lupus LA protein; RRM, 98.9 3.7E-09 1.3E-13 82.6 9.1 67 175-241 17-87 (103)
69 2cph_A RNA binding motif prote 98.9 9.1E-09 3.1E-13 79.6 11.2 73 168-242 16-96 (107)
70 2fy1_A RNA-binding motif prote 98.9 1.3E-08 4.4E-13 80.8 12.3 73 169-243 9-86 (116)
71 3p5t_L Cleavage and polyadenyl 98.9 1.6E-09 5.6E-14 81.7 6.7 66 177-242 9-82 (90)
72 2dnm_A SRP46 splicing factor; 98.9 6.3E-09 2.2E-13 80.1 10.1 72 169-242 15-92 (103)
73 1x4g_A Nucleolysin TIAR; struc 98.9 4.5E-09 1.5E-13 82.0 9.3 70 169-242 27-98 (109)
74 2do4_A Squamous cell carcinoma 98.9 4.2E-09 1.4E-13 80.7 8.8 73 168-242 18-95 (100)
75 3bs9_A Nucleolysin TIA-1 isofo 98.9 2.9E-09 1E-13 79.2 7.7 69 174-242 11-85 (87)
76 2cq0_A Eukaryotic translation 98.9 4.9E-09 1.7E-13 80.8 9.2 69 174-242 20-94 (103)
77 1x4a_A Splicing factor, argini 98.9 5.1E-09 1.7E-13 81.6 9.2 73 168-242 23-98 (109)
78 4a8x_A RNA-binding protein wit 98.9 2.5E-09 8.4E-14 79.7 7.0 66 177-242 12-84 (88)
79 2dis_A Unnamed protein product 98.9 1E-08 3.5E-13 79.6 10.8 67 176-242 15-91 (109)
80 2lkz_A RNA-binding protein 5; 98.9 1.3E-09 4.4E-14 84.2 5.4 73 167-241 9-93 (95)
81 3md1_A Nuclear and cytoplasmic 98.9 4.4E-09 1.5E-13 77.5 8.2 66 177-242 9-80 (83)
82 2wbr_A GW182, gawky, LD47780P; 98.9 1.5E-09 5.2E-14 83.1 5.7 63 177-241 15-79 (89)
83 2kvi_A Nuclear polyadenylated 98.9 6.2E-09 2.1E-13 79.4 9.2 64 175-242 16-82 (96)
84 1x5u_A Splicing factor 3B subu 98.9 1.1E-08 3.8E-13 78.9 10.7 73 168-242 16-94 (105)
85 1x5t_A Splicing factor 3B subu 98.9 4.5E-09 1.5E-13 79.7 8.3 72 169-242 7-85 (96)
86 2dgv_A HnRNP M, heterogeneous 98.9 6.9E-09 2.4E-13 78.1 9.0 72 169-242 10-85 (92)
87 3s8s_A Histone-lysine N-methyl 98.9 3.8E-09 1.3E-13 83.4 7.9 72 169-242 8-85 (110)
88 2mss_A Protein (musashi1); RNA 98.9 4E-09 1.4E-13 76.5 7.3 64 177-240 7-75 (75)
89 1x4h_A RNA-binding protein 28; 98.9 7.3E-09 2.5E-13 80.6 9.4 72 169-242 17-100 (111)
90 1wf0_A TDP-43, TAR DNA-binding 98.9 2.3E-09 7.9E-14 80.4 6.1 67 175-242 11-77 (88)
91 2cqb_A Peptidyl-prolyl CIS-tra 98.9 3.9E-09 1.3E-13 81.1 7.5 73 168-242 13-91 (102)
92 2cpj_A Non-POU domain-containi 98.9 9.2E-09 3.1E-13 78.7 9.6 70 169-242 17-88 (99)
93 2cpx_A Hypothetical protein FL 98.9 6.9E-09 2.4E-13 81.4 8.9 72 169-242 27-104 (115)
94 1p27_B RNA-binding protein 8A; 98.9 8.4E-09 2.9E-13 79.7 9.2 72 169-242 25-102 (106)
95 2jrs_A RNA-binding protein 39; 98.9 1.4E-08 4.8E-13 79.5 10.6 73 168-242 27-105 (108)
96 3lqv_A PRE-mRNA branch site pr 98.9 8.1E-09 2.8E-13 81.1 9.1 72 169-242 10-84 (115)
97 2do0_A HnRNP M, heterogeneous 98.9 1.1E-08 3.7E-13 80.1 9.8 73 168-242 16-93 (114)
98 2e5j_A Methenyltetrahydrofolat 98.9 9.3E-09 3.2E-13 78.5 9.1 72 168-242 20-93 (97)
99 2dgx_A KIAA0430 protein; RRM d 98.9 1.1E-08 3.7E-13 78.2 9.5 72 171-242 11-89 (96)
100 2nlw_A Eukaryotic translation 98.9 4E-09 1.4E-13 82.1 7.1 61 182-242 34-99 (105)
101 2cqc_A Arginine/serine-rich sp 98.9 5.8E-09 2E-13 78.8 7.8 73 167-241 15-93 (95)
102 3mdf_A Peptidyl-prolyl CIS-tra 98.9 4.4E-09 1.5E-13 77.9 7.0 70 169-240 9-84 (85)
103 2ytc_A PRE-mRNA-splicing facto 98.9 4.9E-09 1.7E-13 77.8 7.2 68 169-240 14-84 (85)
104 1x5o_A RNA binding motif, sing 98.9 1.1E-08 3.7E-13 80.2 9.5 68 175-242 31-111 (114)
105 2kt5_A RNA and export factor-b 98.9 1.5E-08 5E-13 80.9 10.4 73 168-242 36-113 (124)
106 3d2w_A TAR DNA-binding protein 98.9 2.7E-09 9.1E-14 80.9 5.7 66 176-242 18-83 (89)
107 2cpz_A CUG triplet repeat RNA- 98.9 7.1E-09 2.4E-13 81.5 8.4 72 169-242 27-104 (115)
108 2bz2_A Negative elongation fac 98.9 4.9E-09 1.7E-13 84.2 7.6 69 168-242 40-110 (121)
109 2y4t_A DNAJ homolog subfamily 98.9 1.2E-09 4.3E-14 101.5 4.6 65 6-75 382-449 (450)
110 2ywk_A Putative RNA-binding pr 98.9 5.8E-09 2E-13 79.0 7.5 72 168-241 17-93 (95)
111 3ns6_A Eukaryotic translation 98.9 2E-09 6.7E-14 83.2 4.9 63 180-242 23-92 (100)
112 2x1f_A MRNA 3'-END-processing 98.9 7E-09 2.4E-13 79.0 7.9 67 176-242 9-81 (96)
113 2cqh_A IGF-II mRNA-binding pro 98.9 3.6E-09 1.2E-13 80.0 6.2 69 169-242 10-82 (93)
114 1p1t_A Cleavage stimulation fa 98.8 8.6E-09 2.9E-13 79.3 8.2 66 177-242 16-87 (104)
115 2dgt_A RNA-binding protein 30; 98.8 2.4E-08 8.1E-13 75.4 10.4 64 175-242 16-81 (92)
116 2err_A Ataxin-2-binding protei 98.8 5.7E-09 2E-13 81.8 7.1 73 168-242 30-106 (109)
117 1x4b_A Heterogeneous nuclear r 98.8 1.2E-08 4.2E-13 80.3 9.0 68 175-242 33-105 (116)
118 2ki2_A SS-DNA binding protein 98.8 6.3E-09 2.1E-13 78.1 6.9 65 177-242 9-79 (90)
119 2dgu_A Heterogeneous nuclear r 98.8 1.9E-08 6.5E-13 77.6 9.8 69 168-242 12-82 (103)
120 1uaw_A Mouse-musashi-1; RNP-ty 98.8 6.7E-09 2.3E-13 75.4 6.8 64 177-240 8-76 (77)
121 1oo0_B CG8781-PA, drosophila Y 98.8 7.2E-09 2.5E-13 80.8 7.4 68 175-242 32-105 (110)
122 2krb_A Eukaryotic translation 98.8 7.2E-09 2.5E-13 76.5 7.0 56 182-237 20-80 (81)
123 2la4_A Nuclear and cytoplasmic 98.8 4.4E-09 1.5E-13 80.7 6.0 66 175-242 33-100 (101)
124 1nu4_A U1A RNA binding domain; 98.8 4E-09 1.4E-13 80.2 5.6 72 169-242 10-88 (97)
125 3ucg_A Polyadenylate-binding p 98.8 1.2E-08 4.2E-13 76.1 8.2 66 177-242 14-84 (89)
126 2e5h_A Zinc finger CCHC-type a 98.8 1E-08 3.6E-13 77.4 7.8 72 167-240 16-93 (94)
127 2e44_A Insulin-like growth fac 98.8 2.7E-08 9.4E-13 75.4 10.1 68 175-242 21-91 (96)
128 2la6_A RNA-binding protein FUS 98.8 1.7E-08 5.7E-13 77.3 9.0 66 175-240 19-98 (99)
129 2dit_A HIV TAT specific factor 98.8 8.1E-09 2.8E-13 81.3 7.3 76 167-242 15-101 (112)
130 2i2y_A Fusion protein consists 98.8 1.3E-08 4.4E-13 83.8 8.8 72 168-242 74-147 (150)
131 2kxn_B Transformer-2 protein h 98.8 1.4E-08 4.7E-13 82.3 8.7 73 168-242 47-125 (129)
132 2cqd_A RNA-binding region cont 98.8 3.9E-08 1.3E-12 77.4 11.0 72 169-242 19-95 (116)
133 2xnq_A Nuclear polyadenylated 98.8 1.5E-08 5.2E-13 77.8 8.3 70 167-242 22-94 (97)
134 1x4c_A Splicing factor, argini 98.8 2.1E-08 7.3E-13 78.2 9.3 69 171-242 17-92 (108)
135 2div_A TRNA selenocysteine ass 98.8 1.1E-08 3.8E-13 78.1 7.5 68 175-242 15-93 (99)
136 2jvo_A Nucleolar protein 3; nu 98.8 1E-08 3.5E-13 80.4 7.4 64 175-242 37-102 (108)
137 2dnp_A RNA-binding protein 14; 98.8 1.7E-08 5.8E-13 75.9 8.3 69 168-242 10-80 (90)
138 3ex7_B RNA-binding protein 8A; 98.8 1.4E-08 4.7E-13 81.0 8.2 72 169-242 24-101 (126)
139 2pe8_A Splicing factor 45; RRM 98.8 1.4E-08 5E-13 79.6 8.1 75 168-242 9-93 (105)
140 1u6f_A Tcubp1, RNA-binding pro 98.8 2.2E-08 7.6E-13 81.2 9.5 73 168-242 43-121 (139)
141 2jvr_A Nucleolar protein 3; RN 98.8 1E-08 3.5E-13 81.4 7.1 71 172-242 31-104 (111)
142 3ulh_A THO complex subunit 4; 98.8 1.4E-08 4.7E-13 78.6 7.7 71 169-241 31-106 (107)
143 2cqp_A RNA-binding protein 12; 98.8 1.2E-08 4E-13 77.8 7.1 72 169-242 17-94 (98)
144 2rs2_A Musashi-1, RNA-binding 98.8 1.3E-08 4.5E-13 79.8 7.5 73 168-242 26-103 (109)
145 2cpe_A RNA-binding protein EWS 98.8 1.8E-08 6.3E-13 78.8 8.4 73 168-242 16-102 (113)
146 1iqt_A AUF1, heterogeneous nuc 98.8 6.8E-09 2.3E-13 75.1 5.3 63 177-239 7-74 (75)
147 2kn4_A Immunoglobulin G-bindin 98.8 2.3E-08 7.9E-13 82.7 9.3 69 174-242 75-149 (158)
148 2cpi_A CCR4-NOT transcription 98.8 1.3E-08 4.5E-13 79.8 7.4 68 175-242 21-100 (111)
149 2lea_A Serine/arginine-rich sp 98.8 2E-08 6.7E-13 82.0 8.4 73 168-242 48-126 (135)
150 1h2v_Z 20 kDa nuclear CAP bind 98.8 1.6E-08 5.4E-13 83.8 7.8 73 168-242 40-118 (156)
151 2dh8_A DAZ-associated protein 98.8 9.5E-09 3.2E-13 79.4 6.0 68 175-242 22-94 (105)
152 2jwn_A Embryonic polyadenylate 98.8 2.8E-08 9.6E-13 79.0 8.8 73 168-242 37-114 (124)
153 3s7r_A Heterogeneous nuclear r 98.8 2.2E-08 7.6E-13 74.6 7.6 69 169-239 13-86 (87)
154 2khc_A Testis-specific RNP-typ 98.7 2.4E-08 8.1E-13 78.7 8.0 69 172-240 43-117 (118)
155 2qfj_A FBP-interacting repress 98.7 5.3E-08 1.8E-12 83.4 10.4 68 175-242 131-204 (216)
156 1fjc_A Nucleolin RBD2, protein 98.7 1.6E-08 5.4E-13 76.7 6.2 72 168-242 17-90 (96)
157 1wf1_A RNA-binding protein RAL 98.7 2.7E-08 9.3E-13 77.6 7.7 68 169-242 29-99 (110)
158 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.7 3.4E-08 1.2E-12 79.7 8.6 71 168-240 64-140 (140)
159 2cpd_A Apobec-1 stimulating pr 98.7 5E-08 1.7E-12 74.6 9.1 68 169-242 17-88 (99)
160 2fc9_A NCL protein; structure 98.7 1.7E-08 6E-13 77.3 6.5 73 168-242 16-90 (101)
161 1x4e_A RNA binding motif, sing 98.7 1.8E-08 6.2E-13 74.7 6.3 65 175-239 11-81 (85)
162 1wi8_A EIF-4B, eukaryotic tran 98.7 8.5E-08 2.9E-12 73.9 10.3 70 171-242 17-93 (104)
163 2cq4_A RNA binding motif prote 98.7 2.3E-08 7.9E-13 78.4 6.8 72 169-242 27-103 (114)
164 2dng_A Eukaryotic translation 98.7 9.3E-08 3.2E-12 73.6 10.1 67 175-242 21-92 (103)
165 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2.8E-08 9.5E-13 83.4 7.7 67 176-242 79-151 (165)
166 1wg5_A Heterogeneous nuclear r 98.7 7.8E-08 2.7E-12 74.5 9.7 72 171-242 17-93 (104)
167 2f3j_A RNA and export factor b 98.7 5.2E-08 1.8E-12 83.2 9.3 71 172-242 91-166 (177)
168 3sde_A Paraspeckle component 1 98.7 2E-07 6.7E-12 83.5 13.6 75 168-242 86-178 (261)
169 3md3_A Nuclear and cytoplasmic 98.7 3.9E-08 1.3E-12 80.4 7.8 66 176-241 94-165 (166)
170 2j76_E EIF-4B, EIF4B, eukaryot 98.7 2.4E-08 8.3E-13 76.8 6.1 72 168-242 20-97 (100)
171 3nmr_A Cugbp ELAV-like family 98.7 8.1E-08 2.8E-12 79.3 9.6 66 175-240 101-174 (175)
172 2xs2_A Deleted in azoospermia- 98.7 1.5E-08 5.1E-13 77.8 4.6 68 175-242 15-85 (102)
173 3egn_A RNA-binding protein 40; 98.7 4.5E-08 1.5E-12 79.9 7.6 72 169-242 47-129 (143)
174 3tyt_A Heterogeneous nuclear r 98.7 3E-08 1E-12 86.5 6.7 63 179-242 15-79 (205)
175 2cjk_A Nuclear polyadenylated 98.7 9.1E-08 3.1E-12 78.7 9.2 67 176-242 94-165 (167)
176 2diu_A KIAA0430 protein; struc 98.6 3.7E-08 1.3E-12 76.3 6.1 61 176-242 16-83 (96)
177 2cpy_A RNA-binding protein 12; 98.6 2.8E-08 9.7E-13 78.3 5.5 71 172-242 18-93 (114)
178 1wel_A RNA-binding protein 12; 98.6 3E-08 1E-12 79.2 5.7 71 171-241 27-102 (124)
179 3beg_B Splicing factor, argini 98.6 5E-08 1.7E-12 77.1 6.9 65 172-239 19-85 (115)
180 2m2b_A RNA-binding protein 10; 98.6 7.1E-08 2.4E-12 77.8 7.9 66 176-242 30-107 (131)
181 3s6e_A RNA-binding protein 39; 98.6 3.4E-08 1.1E-12 78.8 5.7 75 168-242 8-92 (114)
182 3n9u_C Cleavage and polyadenyl 98.6 5.3E-08 1.8E-12 81.6 7.1 67 176-242 62-136 (156)
183 2ek1_A RNA-binding protein 12; 98.6 2.9E-08 9.8E-13 75.1 5.0 71 169-241 17-93 (95)
184 1l3k_A Heterogeneous nuclear r 98.6 1.2E-07 4.1E-12 80.0 9.3 73 168-242 14-91 (196)
185 1fj7_A Nucleolin RBD1, protein 98.6 4E-08 1.4E-12 75.3 5.6 72 171-242 19-94 (101)
186 1jmt_A Splicing factor U2AF 35 98.6 4.9E-08 1.7E-12 76.3 6.1 55 186-240 43-103 (104)
187 1fxl_A Paraneoplastic encephal 98.6 1.6E-07 5.3E-12 76.8 9.4 64 177-240 96-167 (167)
188 2dgw_A Probable RNA-binding pr 98.6 1.5E-07 5E-12 70.7 8.5 67 175-242 16-86 (91)
189 3md3_A Nuclear and cytoplasmic 98.6 1.4E-07 4.9E-12 77.0 9.1 66 177-242 8-78 (166)
190 1b7f_A Protein (SXL-lethal pro 98.6 1.6E-07 5.5E-12 77.1 9.4 65 176-240 96-168 (168)
191 2cjk_A Nuclear polyadenylated 98.6 5E-08 1.7E-12 80.3 6.2 68 175-242 9-80 (167)
192 3v4m_A Splicing factor U2AF 65 98.6 4.8E-08 1.7E-12 76.5 5.8 74 168-241 6-95 (105)
193 1fxl_A Paraneoplastic encephal 98.6 9.3E-08 3.2E-12 78.2 7.7 67 176-242 9-81 (167)
194 2e5g_A U6 snRNA-specific termi 98.6 1.5E-07 5.3E-12 71.2 8.1 70 172-242 11-81 (94)
195 2dnl_A Cytoplasmic polyadenyla 98.6 5.7E-08 1.9E-12 76.5 5.8 68 168-238 9-83 (114)
196 4f02_A Polyadenylate-binding p 98.6 9.1E-08 3.1E-12 83.1 7.7 66 177-242 111-180 (213)
197 1b7f_A Protein (SXL-lethal pro 98.6 8.4E-08 2.9E-12 78.8 6.9 68 175-242 9-82 (168)
198 1wez_A HnRNP H', FTP-3, hetero 98.6 1.6E-07 5.5E-12 72.8 8.0 72 168-242 16-91 (102)
199 3q2s_C Cleavage and polyadenyl 98.6 9.9E-08 3.4E-12 84.7 7.5 68 175-242 74-149 (229)
200 3u1l_A PRE-mRNA-splicing facto 98.6 7.8E-08 2.7E-12 86.3 6.6 59 182-242 156-228 (240)
201 2voo_A Lupus LA protein; RNA-b 98.6 9.1E-08 3.1E-12 82.7 6.8 73 168-242 110-186 (193)
202 1l3k_A Heterogeneous nuclear r 98.5 1.5E-07 5E-12 79.5 7.8 67 176-242 111-182 (196)
203 3pgw_S U1-70K; protein-RNA com 98.5 2.6E-07 8.7E-12 89.6 10.3 67 176-242 109-181 (437)
204 2fc8_A NCL protein; structure 98.5 2E-07 6.7E-12 71.4 7.5 73 168-242 16-91 (102)
205 2lmi_A GRSF-1, G-rich sequence 98.5 1.1E-07 3.7E-12 74.0 5.8 71 172-242 14-91 (107)
206 2qfj_A FBP-interacting repress 98.5 4.4E-07 1.5E-11 77.6 10.1 72 169-242 30-107 (216)
207 1qm9_A Polypyrimidine tract-bi 98.5 3E-07 1E-11 78.1 8.9 67 175-242 126-196 (198)
208 1wg1_A KIAA1579 protein, homol 98.5 2.3E-07 7.8E-12 69.5 7.2 65 175-242 11-77 (88)
209 1qm9_A Polypyrimidine tract-bi 98.5 2.9E-07 1E-11 78.2 8.5 66 176-242 10-78 (198)
210 2hgl_A HNRPF protein, heteroge 98.5 1.5E-07 5E-12 77.3 6.3 71 171-241 46-123 (136)
211 3nmr_A Cugbp ELAV-like family 98.5 3.4E-07 1.2E-11 75.5 8.6 67 176-242 10-87 (175)
212 2db1_A Heterogeneous nuclear r 98.5 1.2E-07 4.2E-12 75.3 5.6 72 171-242 19-97 (118)
213 2adc_A Polypyrimidine tract-bi 98.5 3.8E-07 1.3E-11 80.0 9.1 72 168-242 35-109 (229)
214 3tht_A Alkylated DNA repair pr 98.5 2.6E-07 9E-12 87.1 8.4 71 169-241 20-97 (345)
215 2g4b_A Splicing factor U2AF 65 98.5 1.3E-07 4.5E-12 78.1 5.6 70 169-240 96-171 (172)
216 3pgw_A U1-A; protein-RNA compl 98.5 3.6E-07 1.2E-11 82.0 8.9 70 169-241 209-281 (282)
217 2lcw_A RNA-binding protein FUS 97.8 1.9E-08 6.6E-13 79.2 0.0 66 177-242 15-94 (116)
218 2adc_A Polypyrimidine tract-bi 98.5 6.7E-07 2.3E-11 78.4 9.8 72 168-242 152-227 (229)
219 3pgw_A U1-A; protein-RNA compl 98.5 4.9E-07 1.7E-11 81.2 9.1 73 168-242 10-89 (282)
220 1fje_B Nucleolin RBD12, protei 98.5 2.5E-07 8.7E-12 76.8 6.6 66 176-242 106-173 (175)
221 3ue2_A Poly(U)-binding-splicin 98.4 2.9E-07 1E-11 73.8 6.3 74 168-241 21-107 (118)
222 2yh0_A Splicing factor U2AF 65 98.4 3.8E-07 1.3E-11 77.0 7.4 73 168-242 115-193 (198)
223 4f02_A Polyadenylate-binding p 98.4 3E-07 1E-11 79.8 6.8 72 169-242 17-94 (213)
224 2dnn_A RNA-binding protein 12; 98.4 5.2E-07 1.8E-11 71.2 7.5 71 170-241 17-91 (109)
225 2dha_A FLJ20171 protein; RRM d 98.4 2E-07 6.7E-12 75.3 5.1 70 171-240 25-102 (123)
226 2hgn_A Heterogeneous nuclear r 98.4 2.2E-07 7.7E-12 76.5 4.9 70 172-242 49-122 (139)
227 3sde_A Paraspeckle component 1 98.4 6.1E-07 2.1E-11 80.3 7.5 71 168-242 23-95 (261)
228 3smz_A Protein raver-1, ribonu 98.4 6.8E-07 2.3E-11 80.3 7.7 75 168-242 85-174 (284)
229 2hzc_A Splicing factor U2AF 65 98.4 8.9E-07 3E-11 65.5 6.9 66 168-238 7-85 (87)
230 2ghp_A U4/U6 snRNA-associated 98.3 8.1E-07 2.8E-11 80.1 7.6 71 169-242 212-290 (292)
231 2hgm_A HNRPF protein, heteroge 98.3 8.5E-07 2.9E-11 71.9 6.9 69 172-241 45-119 (126)
232 2j8a_A Histone-lysine N-methyl 98.3 2.9E-07 1E-11 75.3 4.0 62 178-239 15-92 (136)
233 3smz_A Protein raver-1, ribonu 98.3 8E-07 2.7E-11 79.8 7.3 66 177-242 192-263 (284)
234 3tyt_A Heterogeneous nuclear r 98.3 1.4E-06 4.9E-11 75.7 8.5 66 174-239 128-203 (205)
235 2guz_B Mitochondrial import in 98.3 6E-07 2E-11 64.7 4.5 53 7-65 5-57 (65)
236 2ghp_A U4/U6 snRNA-associated 98.3 1E-06 3.6E-11 79.3 6.9 76 168-243 108-197 (292)
237 1fje_B Nucleolin RBD12, protei 98.1 9.4E-07 3.2E-11 73.3 2.9 69 174-242 18-90 (175)
238 2g4b_A Splicing factor U2AF 65 98.1 5.7E-06 2E-10 68.1 6.7 65 176-242 11-87 (172)
239 2yh0_A Splicing factor U2AF 65 98.1 5.6E-06 1.9E-10 69.7 6.3 65 176-242 11-87 (198)
240 3dxb_A Thioredoxin N-terminall 97.8 3.9E-05 1.3E-09 66.7 7.5 62 180-241 140-211 (222)
241 2dnr_A Synaptojanin-1; RRM dom 97.8 6.3E-05 2.1E-09 57.5 7.6 72 167-242 7-85 (91)
242 1owx_A Lupus LA protein, SS-B, 97.7 0.00024 8.1E-09 57.1 10.4 55 170-226 19-75 (121)
243 1ufw_A Synaptojanin 2; RNP dom 97.4 0.00014 4.8E-09 56.0 4.6 71 167-241 15-93 (95)
244 3pq1_A Poly(A) RNA polymerase; 95.1 0.015 5.1E-07 56.6 4.2 53 169-225 55-107 (464)
245 2l9w_A U4/U6 snRNA-associated- 94.7 0.055 1.9E-06 42.6 5.8 61 177-239 29-96 (117)
246 2dhx_A Poly (ADP-ribose) polym 94.1 0.3 1E-05 37.9 8.7 67 171-241 10-82 (104)
247 1whv_A Poly(A)-specific ribonu 93.2 0.17 5.8E-06 39.0 5.8 55 166-227 15-69 (100)
248 1wwh_A Nucleoporin 35, nucleop 91.4 0.45 1.5E-05 37.8 6.4 56 182-239 36-91 (119)
249 3ctr_A Poly(A)-specific ribonu 91.4 0.15 5.2E-06 39.3 3.5 46 178-227 14-59 (101)
250 2kn4_A Immunoglobulin G-bindin 85.8 0.8 2.7E-05 36.7 4.4 24 203-226 9-32 (158)
251 1wey_A Calcipressin 1; structu 85.2 2.2 7.6E-05 32.9 6.4 58 183-242 24-83 (104)
252 2i2y_A Fusion protein consists 74.2 2.9 0.0001 33.1 4.0 43 199-242 5-50 (150)
253 3p3d_A Nucleoporin 53; structu 69.0 3 0.0001 33.6 2.8 60 182-241 19-97 (132)
254 3d45_A Poly(A)-specific ribonu 63.2 16 0.00053 35.6 7.2 52 172-228 443-494 (507)
255 4e8u_A Putative uncharacterize 44.8 18 0.00062 30.3 3.7 45 180-224 32-80 (172)
256 1go4_E MAD1 (mitotic arrest de 34.3 1.5E+02 0.0051 22.4 7.4 28 113-140 65-92 (100)
257 1uw4_A UPF3X; nonsense mediate 24.6 2.1E+02 0.0071 21.0 8.1 52 175-226 7-64 (91)
258 3n9y_A Cholesterol SIDE-chain 22.6 1.4E+02 0.0048 27.1 6.2 40 183-227 35-74 (487)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=138.43 Aligned_cols=70 Identities=41% Similarity=0.675 Sum_probs=65.9
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
....|||+||||+++ ++..+|+++||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++
T Consensus 4 ~~~~~~y~iLgv~~~-----a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 4 GSSGDYYQILGVPRN-----ASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCCSCHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 356799999999997 8999999999999999999999988899999999999999999999999999864
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.3e-20 Score=143.90 Aligned_cols=71 Identities=27% Similarity=0.523 Sum_probs=66.9
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+...|||+||||+++ ++..+|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 14 ~~~~~~Y~vLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 14 YSRTALYDLLGVPST-----ATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SCSSHHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCccCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 456899999999998 89999999999999999999999889999999999999999999999999998764
No 3
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=145.25 Aligned_cols=70 Identities=39% Similarity=0.634 Sum_probs=66.5
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ ++..+|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 18 ~~~d~Y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDEL-----SSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTT-----SCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 45799999999998 89999999999999999999999888999999999999999999999999999875
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=1.2e-19 Score=135.69 Aligned_cols=68 Identities=37% Similarity=0.768 Sum_probs=63.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
+.|||+||||+++ ++..+|++|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~~y~iLgv~~~-----as~~~Ik~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARG-----ASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTT-----CCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 5799999999998 89999999999999999999997 57789999999999999999999999998753
No 5
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.78 E-value=9.8e-20 Score=141.04 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=65.1
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD------PDAHDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
+...|||+||||+++ ++..+|++|||+++++||||+++.+ +.+.+.|+.|++||++|+||.+|..||..
T Consensus 13 ~~~~~~y~iLgv~~~-----as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 87 (94)
T 1wjz_A 13 TLKKDWYSILGADPS-----ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87 (94)
T ss_dssp SSCSCHHHHTTCCTT-----CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred CCCCChHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456799999999998 8999999999999999999999854 46889999999999999999999999998
Q ss_pred HH
Q 022762 77 LK 78 (292)
Q Consensus 77 ~~ 78 (292)
+.
T Consensus 88 l~ 89 (94)
T 1wjz_A 88 RS 89 (94)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 6
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=4e-19 Score=141.73 Aligned_cols=72 Identities=36% Similarity=0.667 Sum_probs=67.6
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (292)
....|||+||||+++ ++..+|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.....
T Consensus 14 ~~~~~~Y~vLgv~~~-----as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 14 TSGESLYHVLGLDKN-----ATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp SCSCCHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 456899999999998 899999999999999999999998899999999999999999999999999987754
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.6e-19 Score=136.62 Aligned_cols=69 Identities=42% Similarity=0.657 Sum_probs=64.4
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
....|||+||||+++ ++..+|+++||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++
T Consensus 14 ~~~~d~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 14 ALDFDPYRVLGVSRT-----ASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp SSSSCHHHHHTCCTT-----CCHHHHHHHHHHHHHHSCTTTCC-STTHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred cCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 356899999999997 89999999999999999999998 4788999999999999999999999999875
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=134.67 Aligned_cols=69 Identities=38% Similarity=0.691 Sum_probs=63.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
...|||+||||+++ ++..+|++|||+++++||||++++++ .+.+.|+.|++||++|+||.+|..||.++
T Consensus 7 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQ-----ASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTT-----CCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 45799999999998 89999999999999999999998764 67889999999999999999999999865
No 9
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-19 Score=133.78 Aligned_cols=68 Identities=32% Similarity=0.681 Sum_probs=63.8
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
...|||+||||+++ ++..+|++|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||..+
T Consensus 5 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 5 SSGDYYEILGVSRG-----ASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp CSCCHHHHHTCCTT-----CCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 46799999999998 89999999999999999999997 5788999999999999999999999999865
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=135.68 Aligned_cols=70 Identities=36% Similarity=0.635 Sum_probs=65.3
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
....|||+||||+++ ++.++|+++||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKS-----ASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 356799999999997 89999999999999999999998 68899999999999999999999999998764
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.76 E-value=5.4e-19 Score=130.89 Aligned_cols=67 Identities=39% Similarity=0.737 Sum_probs=61.3
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
+...|||+||||+++ ++..+|+++||+++++||||+++++ .+.|+.|+.||++|+||.+|..||..+
T Consensus 5 ~~~~~~y~iLgl~~~-----a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPD-----ASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTT-----CCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 356899999999998 8999999999999999999999754 579999999999999999999999864
No 12
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.75 E-value=2.5e-19 Score=141.37 Aligned_cols=69 Identities=36% Similarity=0.673 Sum_probs=65.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ ++.++|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKT-----AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSS-----CCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 4799999999998 89999999999999999999999878899999999999999999999999998764
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=135.82 Aligned_cols=68 Identities=35% Similarity=0.711 Sum_probs=63.2
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ ++.++|++|||+++++||||+++++. .+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~d~Y~iLgv~~~-----as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRS-----ASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTT-----SCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 589999999998 89999999999999999999998653 578999999999999999999999999864
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=134.80 Aligned_cols=69 Identities=38% Similarity=0.675 Sum_probs=63.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
...|||+||||+++ ++..+|+++||+++++||||++++++ .+.+.|+.|++||++|+||.+|..||..+
T Consensus 7 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 7 GMANYYEVLGVQAS-----ASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCCHHHHHTCCTT-----CCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CCcCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 45799999999998 89999999999999999999998654 68899999999999999999999999875
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-18 Score=133.44 Aligned_cols=69 Identities=32% Similarity=0.629 Sum_probs=63.1
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (292)
+...|||+||||+++ ++..+|+++||+++++||||+++++ .+.|+.|++||++|+||.+|..||..+..
T Consensus 5 ~~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPS-----ANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 356899999999998 8999999999999999999999765 46999999999999999999999998753
No 16
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.73 E-value=2.1e-18 Score=148.37 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=75.4
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||++++ +++..+|+++||+++++||||++++.+. +...|..|++||++|+||.+|..||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a---~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQF---ELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSS---CCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 357999999999972 2349999999999999999999987664 67899999999999999999999998875
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 79 IKREKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 79 ~~~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
...........+ .-.-+++.|+.||.
T Consensus 79 g~~~~~e~~~~~--d~~fLme~me~rE~ 104 (174)
T 3hho_A 79 GIEMNAEQQTLQ--DPMFLMEQMELREE 104 (174)
T ss_dssp TCCCC----CCC--CHHHHHHHHHHHHH
T ss_pred CCCcccccCCCC--CHHHHHHHHHHHHH
Confidence 332211111112 23477888999987
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.72 E-value=2.7e-18 Score=136.71 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=64.7
Q ss_pred CCcccccccccccCCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKL-TEKEISKAYKWKALELHPDKRPD---DPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a-~~~eIkkaYrk~al~~HPDk~~~---~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
...|||+||||+++ + +..+|++|||+++++||||++++ .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~y~iLgv~~~-----a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNRE-----EFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGG-----GCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCC-----CCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 46799999999998 7 99999999999999999999985 35688999999999999999999999999874
No 18
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.72 E-value=3.6e-18 Score=146.57 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=74.9
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKIK 80 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 80 (292)
+|||+||||++++ .++..+|+++||+++++||||++++++. |.+.|..|+.||++|+||.+|..||..+...
T Consensus 1 ~d~y~lLgl~~~a---~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 77 (171)
T 1fpo_A 1 MDYFTLFGLPARY---QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF 77 (171)
T ss_dssp CHHHHHTTCCSSS---CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred CCHHHHCCCCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence 4899999999972 2399999999999999999999987653 5679999999999999999999999987532
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 81 REKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 81 ~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
.........++ -.-+++.|+.||.
T Consensus 78 ~~~~e~~~~~d--~~fLme~me~rE~ 101 (171)
T 1fpo_A 78 DLASEQHTVRD--TAFLMEQLELREE 101 (171)
T ss_dssp CTTCSSSCCSC--HHHHHHHHHHHHH
T ss_pred CccccccccCC--HHHHHHHHHHHHH
Confidence 21111011122 2467888888885
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=140.33 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=65.0
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHHccCchhhhhHHHH
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP------DAHDNFQKLKSSYEILKDEKARKLFDDL 76 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 76 (292)
+...|||+||||+++ ++.++|++|||+++++||||++++++ .+.+.|..|++||++|+||.+|+.||..
T Consensus 7 ~~~~~~y~iLgv~~~-----a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~ 81 (155)
T 2l6l_A 7 MPKKDWYSILGADPS-----ANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ 81 (155)
T ss_dssp CCCSHHHHHHTCCTT-----CCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred CCCCChhHhcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346799999999998 89999999999999999999998764 3678999999999999999999999988
Q ss_pred HHH
Q 022762 77 LKI 79 (292)
Q Consensus 77 ~~~ 79 (292)
+..
T Consensus 82 ~~~ 84 (155)
T 2l6l_A 82 RCE 84 (155)
T ss_dssp HHH
T ss_pred cch
Confidence 753
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-18 Score=129.94 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=58.0
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhh
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKL 72 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 72 (292)
...|||+||||+++ ++..+||+|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~-----as~~eIk~aYr~la~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPG-----ASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCcccccC
Confidence 35799999999997 89999999999999999999998 57788999999999999999988763
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.69 E-value=1.3e-17 Score=145.28 Aligned_cols=68 Identities=43% Similarity=0.785 Sum_probs=64.9
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ ++..+||+|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||....
T Consensus 2 ~~~y~~l~~~~~-----a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKT-----ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 589999999998 89999999999999999999999889999999999999999999999999998763
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=140.39 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=73.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHccCchhhhhHHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD-----AHDNFQKLKSSYEILKDEKARKLFDDLLKI 79 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 79 (292)
..|||+||||++++ +++..+|+++||+++++||||++++++. |.+.|..|++||++|+||.+|+.||..+..
T Consensus 42 ~~d~y~lLgv~~~~---~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 42 TRDYFSLMDCNRSF---RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp TCCHHHHTTSCSCS---CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 57999999999863 4799999999999999999999987643 567899999999999999999999987642
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022762 80 KREKQQRQSQQDGKRRKMMSDLEERER 106 (292)
Q Consensus 80 ~~~~~~r~~~~~~kr~~~~~dLe~RE~ 106 (292)
..-.......++ -.-+++.++.||.
T Consensus 119 ~~~~~e~~~~~d--~~fLme~me~~E~ 143 (207)
T 3bvo_A 119 IEIPERTDYEMD--RQFLIEIMEINEK 143 (207)
T ss_dssp CCCCSSCSSSSC--HHHHHHHHHHHHH
T ss_pred CCcccccccCCC--HHHHHHHHHHHHH
Confidence 210000000111 1256777888885
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.63 E-value=7.5e-17 Score=123.92 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=56.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHccCchhhh
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDP-DAHDNFQKLKSSYEILKDEKARK 71 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~ 71 (292)
...++|+||||+++ ++.++|++|||+++++||||++++++ .+.+.|+.|++||++|+|...|.
T Consensus 14 ~~~~~y~vLgv~~~-----as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 14 ILKEVTSVVEQAWK-----LPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CHHHHHHHHHHTTS-----SCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34689999999998 89999999999999999999999774 58899999999999999976653
No 24
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=117.47 Aligned_cols=76 Identities=32% Similarity=0.458 Sum_probs=69.2
Q ss_pred ccceEEEEeeec-----CCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEec
Q 022762 166 KEKVLKVSWEKF-----GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPL 240 (292)
Q Consensus 166 ~~~~lkvKWk~~-----~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~ 240 (292)
..++|+|+|+.. +..+|++.|+++|++||.|.+|.|. .+.+|||||+|.+.++|..|+....|+.++||.|.|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 356899999983 3579999999999999999999995 6789999999999999999999999999999999998
Q ss_pred CC
Q 022762 241 QP 242 (292)
Q Consensus 241 ~~ 242 (292)
.+
T Consensus 88 ~~ 89 (100)
T 2d9o_A 88 EG 89 (100)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 25
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=9.7e-17 Score=138.58 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=59.9
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHccCchhhhhH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD---AHDNFQKLKSSYEILKDEKARKLF 73 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (292)
...|||+||||+++ ++..+||+|||+++++|||||+++++. |.+.|+.|++||++|+|+.+|..|
T Consensus 115 ~~~d~Y~vLgv~~~-----As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADL-----VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGG-----SSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCC-----CCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34699999999998 899999999999999999999987654 889999999999999999999877
No 26
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=9.4e-17 Score=124.25 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=51.7
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHccC
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPD---AHDNFQKLKSSYEILKD 66 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~---a~~~f~~i~~Ay~vL~d 66 (292)
.++|.+|||+++ ++..+||+|||+++++|||||+|+++. |.+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~-----as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADL-----VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGS-----SSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999998 899999999999999999999997763 78899999999999974
No 27
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.62 E-value=7.1e-16 Score=133.40 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCccccccc------ccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHH
Q 022762 4 DHVDHYRVL------GLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLL 77 (292)
Q Consensus 4 ~~~d~Y~iL------gv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 77 (292)
...|||+|| |+++- +++..+|+++||+++++||||++++ +.+.|..|++||++|+||.+|..||..+
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~----~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIW----TIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCS----CCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCC----CCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 356999999 46552 3999999999999999999999975 6689999999999999999999999987
Q ss_pred -HHHHHHHHH--HhhhhhHHHHHHHHHHHHHHH
Q 022762 78 -KIKREKQQR--QSQQDGKRRKMMSDLEERERA 107 (292)
Q Consensus 78 -~~~~~~~~r--~~~~~~kr~~~~~dLe~RE~~ 107 (292)
......... .......-.-+++.++.||.=
T Consensus 82 ~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~l 114 (181)
T 3uo3_A 82 LRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDEL 114 (181)
T ss_dssp HHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 321111110 001112235788889999873
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.59 E-value=8.4e-17 Score=151.18 Aligned_cols=68 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
..|||+||||+++ |+.++||+|||+++++||||+++ ++.|.+.|+.|++||++|+||.+|..||.++.
T Consensus 27 ~~d~Y~vLgv~~~-----as~~eIk~aYr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 27 LKDYYAILGVQPT-----DDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCC-----CCHHHHHHHHHHHHHHHCCCCCC-ChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 4699999999998 89999999999999999999998 46789999999999999999999999999854
No 29
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.59 E-value=5.8e-17 Score=130.29 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=56.8
Q ss_pred CcccccccccccCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHH
Q 022762 5 HVDHYRVLGLPSGEEGAKLTE--KEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDD 75 (292)
Q Consensus 5 ~~d~Y~iLgv~~~~~~~~a~~--~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 75 (292)
..|||+||||+++ ++. .+||+|||+++++||||++++ .+.|+.|++||++|+||.+|..||.
T Consensus 7 ~~~~Y~iLgv~~~-----as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 7 SLQLMDLLGLERS-----AWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHTTCCTT-----SCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhHHHHcCCCCC-----CCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 3689999999998 677 999999999999999999875 3689999999999999999999984
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.58 E-value=4.4e-16 Score=123.59 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----hHHHHHHHHHHHHHHccCch
Q 022762 3 VDHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPD---DP----DAHDNFQKLKSSYEILKDEK 68 (292)
Q Consensus 3 ~~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~---~~----~a~~~f~~i~~Ay~vL~d~~ 68 (292)
+.+.|||.|||++. ++..+||+|||+++++|||||+++ ++ .|.+.|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~------As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM------IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS------CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC------CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 34679999999984 799999999999999999999874 12 36889999999999999985
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.54 E-value=3.1e-16 Score=134.55 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=56.1
Q ss_pred cccccccccccCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLT--EKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~--~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.|||+||||+++ ++ .++||+|||++++++|||++++ .+.|+.|++||++|+||.+|+.||....
T Consensus 11 ~d~Y~vLGl~~~-----as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERS-----AWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGG-----GTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCC-----CCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 689999999998 56 7999999999999999999875 2689999999999999999999999774
No 32
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.54 E-value=1.6e-15 Score=114.13 Aligned_cols=61 Identities=30% Similarity=0.310 Sum_probs=53.6
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLF 73 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y 73 (292)
.++|+||||+++. .++..+|++|||+++++||||++++ .+.|+.|++||++|+|+..|..+
T Consensus 11 ~~~y~iLgl~~~~---~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 11 ERLLELLKLPRQL---WGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHTCCSSS---TTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH
Confidence 4799999999862 2799999999999999999999853 47999999999999999888753
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.1e-15 Score=109.60 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=50.9
Q ss_pred Cccccccccccc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhh
Q 022762 5 HVDHYRVLGLPS-GEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKAR 70 (292)
Q Consensus 5 ~~d~Y~iLgv~~-~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R 70 (292)
..++|+||||++ + ++.++|+++||+++++||||++. + .+.|+.|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~-----a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENT-----LTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTT-----CCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhc
Confidence 358999999998 6 89999999999999999999963 3 36999999999999998765
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.44 E-value=5.8e-15 Score=151.58 Aligned_cols=70 Identities=41% Similarity=0.767 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHccCchhhhhHHHHHH
Q 022762 4 DHVDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILKDEKARKLFDDLLK 78 (292)
Q Consensus 4 ~~~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 78 (292)
.+.|||+||||+++ |+.++||+|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 19 ~~~~~y~~lg~~~~-----a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 19 HDQNFYSLLGVSKT-----ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ----CHHHHTCCTT-----CCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCHHHHcCCCCC-----CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 46799999999998 89999999999999999999999888999999999999999999999999998764
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=89.70 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=57.9
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|++||+|.+|.|.. +..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..|
T Consensus 26 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 26 YLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 3556799999999999999999998852 56789999999999999999974 5666789999999875
No 36
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.08 E-value=6.2e-10 Score=94.61 Aligned_cols=76 Identities=24% Similarity=0.176 Sum_probs=62.7
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCC--CCeEEEecCCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLS--NPLLVLPLQPA 243 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~--~pl~v~~~~~~ 243 (292)
+.++|--......+|++.|+++|++||.|..|.|.....+|+|||+|.+.++|..|+.. +..+.+ ++|.|.|..+.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 45666555666779999999999999999999986555689999999999999999986 444433 89999998764
No 37
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1e-09 Score=85.71 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=59.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cC--CCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CG--NLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~--~g--~~~~pl~v~~~~~ 242 (292)
++|-|. ..+..+|++.|+++|++||.|.+|.|.. .+|+|||+|.+.++|..|+... .+ +.+.||.|.|..+
T Consensus 16 ~~l~V~--nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 16 RVLHIR--KLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SEEEEE--SCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 456664 3456799999999999999999998853 3899999999999999999853 34 6789999999864
No 38
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.07 E-value=3.7e-10 Score=88.45 Aligned_cols=71 Identities=24% Similarity=0.250 Sum_probs=58.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC----CCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG----NLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g----~~~~pl~v~~~~~ 242 (292)
++|-|+ ..+..+|++.|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+....| ..+.||.|.|..+
T Consensus 22 ~~l~V~--NLp~~~te~~L~~lF~~fG~V~~v~i~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 22 PVVHIR--GLIDGVVEADLVEALQEFGPISYVVVM--PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp SEEEEE--SCCTTCCHHHHHHHHGGGSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cEEEEe--CCCCCCCHHHHHHHHhccCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 344443 345679999999999999999999985 4689999999999999999987444 4489999999764
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.6e-10 Score=90.03 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=56.3
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc----CCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC----GNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~----g~~~~pl~v~~~~~ 242 (292)
...+..+|++.|+++|++||.|.+|.|.. .+|+|||+|.+.++|..|+.... .+.+.||.|.|..+
T Consensus 22 ~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 22 RKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 34556799999999999999999999864 37999999999999999998543 25689999999864
No 40
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=1.6e-09 Score=85.00 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=59.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcC--CCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCG--NLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g--~~~~pl~v~~~~~ 242 (292)
++|-|. .....++++.|+++|++||.|.+|.|.. .+|+|||+|.+.++|..|+.. ..+ +.+.||.|.|..+
T Consensus 16 ~~l~V~--nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 16 PVVHVR--GLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp SEEEEE--SCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 456664 3556799999999999999999999853 489999999999999999985 344 6789999999864
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3e-09 Score=80.52 Aligned_cols=72 Identities=24% Similarity=0.357 Sum_probs=60.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
+|-|. .....+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 7 ~l~v~--nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 7 GLYVG--SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp EEEEE--SCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 45443 4455799999999999999999999853 4568999999999999999997 46667899999999875
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=5.7e-10 Score=87.52 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=56.3
Q ss_pred eecCC-CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcC--CCCCCeEEEecCC
Q 022762 175 EKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCG--NLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~-~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g--~~~~pl~v~~~~~ 242 (292)
...+. .+|+++|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+.+ ..+ +.+.||.|.|..+
T Consensus 21 ~nLp~~~~te~dL~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 21 MDFQRGKNLRYQLLQLVEPFGVISNHLIL--NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp ESCCCSSSHHHHHHTTTGGGSCEEEEEEC--SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred eCCCCCcCCHHHHHHHHHhcCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34555 78999999999999999999985 3469999999999999999985 334 6789999999864
No 43
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=8.4e-10 Score=88.38 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC-------CCCCeEEEec
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN-------LSNPLLVLPL 240 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~-------~~~pl~v~~~ 240 (292)
++|-|+-......+|++.|+++|++||.|.+|+|.. .+|||||+|.+.++|..|+....|. .+.||+|.++
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 457776333556799999999999999999999853 4799999999999999999976664 3678999998
Q ss_pred CC
Q 022762 241 QP 242 (292)
Q Consensus 241 ~~ 242 (292)
.+
T Consensus 104 ~~ 105 (114)
T 2cq2_A 104 EK 105 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 44
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.01 E-value=5.8e-10 Score=91.33 Aligned_cols=74 Identities=27% Similarity=0.237 Sum_probs=61.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcce-EEEEecCHHHHHHHHHhhcC--CCC--CCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGS-ALVVMATKSAAGAATGSVCG--NLS--NPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~-A~V~F~~~~~A~~Av~~~~g--~~~--~pl~v~~~~~ 242 (292)
+.|+|--......+|++.|+++|++||.|..|+|.. +.+|+ |||+|.+.++|..|+....| ..+ ++|+|.|..+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 467777777777899999999999999999999853 34677 99999999999999987444 444 8999999875
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=8.4e-10 Score=89.00 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=59.0
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh----cCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV----CGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~----~g~~~~pl~v~~~~~ 242 (292)
++|-|. ..+..+|++.|+++|++||.|.+|.|.. .+|+|||+|.+.++|..|+... ..+.+.||.|.|..+
T Consensus 32 ~~LfVg--NLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 32 RVIHIR--KLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SEEEEE--SCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 355553 4556799999999999999999999864 3799999999999999999853 247789999999865
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.00 E-value=4.7e-09 Score=82.48 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=59.0
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
|-.......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 33345566799999999999999999998852 45589999999999999999974 4446789999999875
No 47
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.1e-09 Score=82.90 Aligned_cols=73 Identities=21% Similarity=0.078 Sum_probs=61.3
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.+...+.+.+|.|.|..+
T Consensus 16 ~~l~v--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 16 SDLIV--LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCEEE--ESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CEEEE--EcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 34554 34556799999999999999999998852 556899999999999999999976667789999999865
No 48
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=2.2e-09 Score=81.90 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=58.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCC--CCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNL--SNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~--~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|++||.|.+|.+.. .+|+|||+|.+.++|..|+.. ...+. +.+|.|.|..+
T Consensus 18 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 18 TRLWV--GGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp SCEEE--ECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 34555 34556799999999999999999999853 389999999999999999985 44455 78999999875
No 49
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-09 Score=88.72 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=59.3
Q ss_pred ceEEEEeeecCCCCCHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 168 KVLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~----~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
++|-|. ..+..++++.|+ ++|++||.|.+|.+. +++.+|+|||+|.+.++|..|+.. +..+.+.||.|.|.
T Consensus 30 ~~LfV~--nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 30 QVVLIT--NINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp SEEEEE--SCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 345543 345568888765 799999999999885 467899999999999999999975 56678999999998
Q ss_pred CC
Q 022762 241 QP 242 (292)
Q Consensus 241 ~~ 242 (292)
.+
T Consensus 108 ~~ 109 (127)
T 2a3j_A 108 ET 109 (127)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=3.6e-09 Score=81.55 Aligned_cols=72 Identities=26% Similarity=0.340 Sum_probs=60.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-|. .....+|++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 17 ~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 17 NLYVK--NLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp CEEEE--CCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 45444 4455799999999999999999999863 46799999999999999999984 5567889999999875
No 51
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=4.2e-09 Score=80.84 Aligned_cols=66 Identities=20% Similarity=0.132 Sum_probs=58.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~~ 243 (292)
....+|++.|+++|++||.|..|.|... .+|+|||+|.+.++|..|+. ++....+.+|.|.|..+.
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 4557999999999999999999998644 79999999999999999998 467788999999998763
No 52
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=2.4e-09 Score=84.44 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.......+|++.|+++|++||.|..|.|. +.+|+|||+|.+.++|..|+.. +..+.+.||.|.|...
T Consensus 15 V~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 15 AKNLPAGTLAAEIQETFSRFGSLGRVLLP--EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECC--SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 33455679999999999999999999984 5789999999999999999975 5557899999999764
No 53
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=5.7e-09 Score=79.80 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=60.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 11 ~~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 11 NKIFVG--GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp CEEEEE--SCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 455553 4556799999999999999999999852 4578999999999999999997 45556789999999875
No 54
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=4e-09 Score=85.55 Aligned_cols=74 Identities=26% Similarity=0.292 Sum_probs=60.8
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcce-EEEEecCHHHHHHHHHhhcCC--CC--CCeEEEecC
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGS-ALVVMATKSAAGAATGSVCGN--LS--NPLLVLPLQ 241 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~-A~V~F~~~~~A~~Av~~~~g~--~~--~pl~v~~~~ 241 (292)
.++|+|--......+|++.|+++|++||.|..|+|.. + .|+ |||+|.+.++|..|+....|. .+ ++|.|.|..
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3467666666667899999999999999999999853 3 495 999999999999999875543 33 699999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 6
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.5e-09 Score=81.64 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=59.9
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcc-cCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC---CCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSE-FGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG---NLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~-yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g---~~~~pl~v~~~~ 241 (292)
+|-| ......+|++.|+++|+. ||.|.+|.|.. +..+|+|||+|.+.++|..|+....| +.+.+|.|.|..
T Consensus 11 ~l~V--~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 11 SLFV--GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CEEE--ECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 4444 345567999999999999 99999998852 55799999999999999999986444 678999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 89 ~ 89 (104)
T 2dhg_A 89 P 89 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 56
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=1.2e-09 Score=87.20 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=58.2
Q ss_pred eEEEEeeecCCC-CCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcC--CCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCG--NLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~-~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g--~~~~pl~v~~~~~ 242 (292)
+|-|. ..+.. +|++.|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+.+ ..+ +.+.+|.|.|..+
T Consensus 27 ~l~V~--NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 27 VIHLS--NLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp EEEEE--SCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred EEEEe--CCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 44443 34554 8999999999999999999985 4589999999999999999985 344 7889999999864
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.96 E-value=4.8e-10 Score=85.35 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=55.9
Q ss_pred cCCCCCHHHHHHHhcccC-CeeEEEEe----cCCCcceEEEEecCHHHHHHHHHhhc---CCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFG-KVEDVVIK----SSKKKGSALVVMATKSAAGAATGSVC---GNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG-~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~---g~~~~pl~v~~~~~ 242 (292)
.+..+|+++|+++|++|| .|.+|.|. +++.+|+|||+|.+.++|..|+.... -+.+.+|.|.|..|
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 456799999999999999 89999874 25679999999999999999997532 35689999999865
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=4.8e-09 Score=80.10 Aligned_cols=73 Identities=25% Similarity=0.213 Sum_probs=60.3
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..
T Consensus 9 ~~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 9 GRLFVR--NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp EEEEEE--CCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345543 4556799999999999999999999852 45789999999999999999964 455678999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 87 ~ 87 (99)
T 1whw_A 87 I 87 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.95 E-value=8.7e-09 Score=79.62 Aligned_cols=72 Identities=21% Similarity=0.426 Sum_probs=59.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--C---CCCCeEEEe
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--N---LSNPLLVLP 239 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~---~~~pl~v~~ 239 (292)
+|-| ......+|+++|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+....| . .+.+|.|.|
T Consensus 15 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 15 KLFI--GQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 4444 34566799999999999999999999853 45789999999999999999986444 3 679999999
Q ss_pred cCC
Q 022762 240 LQP 242 (292)
Q Consensus 240 ~~~ 242 (292)
..+
T Consensus 93 a~~ 95 (106)
T 2dgp_A 93 ADS 95 (106)
T ss_dssp CCC
T ss_pred CCc
Confidence 865
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=7.5e-09 Score=79.70 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=60.0
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|..|.|.. ...+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 17 RLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp EEEE--ESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 4444 45566799999999999999999999863 34689999999999999999974 4456789999999875
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.95 E-value=6e-09 Score=80.44 Aligned_cols=68 Identities=21% Similarity=0.391 Sum_probs=57.1
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCC---CCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLS---NPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~---~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+....| +.+ .+|.|.|..+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 21 GMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 44566799999999999999999999853 45589999999999999999985333 455 8999999875
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=1.7e-09 Score=82.52 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=59.0
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec--C-----CCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEe
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--S-----KKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP 239 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~--~-----k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~ 239 (292)
+|-|. .....+|++.|+++|++||.|..|.|.. . ..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|
T Consensus 7 ~l~V~--nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 7 GLFIK--NLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CEEEE--SCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44443 3455699999999999999999999852 1 5689999999999999999984 5556789999999
Q ss_pred cCC
Q 022762 240 LQP 242 (292)
Q Consensus 240 ~~~ 242 (292)
..+
T Consensus 85 a~~ 87 (98)
T 2cpf_A 85 SER 87 (98)
T ss_dssp SSC
T ss_pred ccC
Confidence 875
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=3.8e-09 Score=81.41 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=58.0
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. ...+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 21 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred eCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 34556799999999999999999999863 34689999999999999999974 4556789999999875
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=5.7e-09 Score=80.13 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=60.8
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-| ......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..
T Consensus 13 ~~l~v--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 13 GKLFV--GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp SEEEE--ESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CEEEE--ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34554 44556799999999999999999999853 44689999999999999999964 556788999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 91 ~ 91 (102)
T 1x5s_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 65
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=8.9e-09 Score=77.45 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=58.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|++||.|..|.|. +|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 9 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 9 VKLFI--GNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp EEEEE--ESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred eEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34444 3556679999999999999999999994 78999999999999999975 4457899999999865
No 66
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.2e-09 Score=82.05 Aligned_cols=69 Identities=28% Similarity=0.254 Sum_probs=58.8
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|.- ..+|++.|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 16 ~~l~V~n----~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 16 NTLYVYG----EDMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp SEEEEEC----SSCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CEEEEcC----CCCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4566653 379999999999999999999983 6789999999999999999974 4556789999999865
No 67
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.93 E-value=1.3e-09 Score=86.25 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=56.5
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+..+|++.|+++|++||.|.+|.|.. ...+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 456799999999999999999998853 44689999999999999999975 5556788999999865
No 68
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=3.7e-09 Score=82.55 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=56.8
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
...+..+|++.|+++|++||+|.+|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 17 KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp ECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred ECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 34556799999999999999999999863 55799999999999999999973 455678899999864
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=9.1e-09 Score=79.55 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=60.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHh---hcCCCCCCeEEEe
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGS---VCGNLSNPLLVLP 239 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~~---~~g~~~~pl~v~~ 239 (292)
++|-| ......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|
T Consensus 16 ~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 16 SKILV--RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCEEE--ESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CEEEE--eCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 34544 34556799999999999999999999842 34689999999999999999974 5566789999999
Q ss_pred cCC
Q 022762 240 LQP 242 (292)
Q Consensus 240 ~~~ 242 (292)
..+
T Consensus 94 a~~ 96 (107)
T 2cph_A 94 ADS 96 (107)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-08 Score=80.79 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=61.0
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQPA 243 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~~ 243 (292)
+|-| ......+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+.
T Consensus 9 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 9 KLFI--GGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp EEEE--ECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 4444 34556799999999999999999999863 55789999999999999999975 55578899999998753
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.93 E-value=1.6e-09 Score=81.73 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=54.9
Q ss_pred cCCCCCHHHHHHHhcccC--CeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFG--KVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG--~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....+|+++|+++|+.|| .|.+|.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.+..|
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 445689999999999999 999998742 56799999999999999999964 6668899999999875
No 72
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=6.3e-09 Score=80.13 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=60.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 15 ~l~V--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 15 TLKV--DNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 4444 34556799999999999999999999852 45689999999999999999984 5667889999999875
No 73
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=4.5e-09 Score=82.00 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=58.8
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+.+|+.||.|..|.|... +|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 27 ~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 27 TVYC--GGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp EEEE--ECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 4544 445667999999999999999999998533 89999999999999999975 4446789999999875
No 74
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.2e-09 Score=80.72 Aligned_cols=73 Identities=27% Similarity=0.213 Sum_probs=60.7
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 18 ~~l~v~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 18 HKLFIS--GLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SCEEEE--SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 355553 4556799999999999999999999853 45689999999999999999964 5557789999999875
No 75
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.92 E-value=2.9e-09 Score=79.19 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=57.7
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.......+|+++|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 11 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 344556799999999999999999999852 45689999999999999999985 4556789999999864
No 76
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=4.9e-09 Score=80.77 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=58.6
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.......+|++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 20 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 20 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 345566799999999999999999999852 45689999999999999999985 4456789999999875
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=5.1e-09 Score=81.60 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=60.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|+++|+++|++||.|..|.|.. ...+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 23 ~~l~V~--nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 23 CRIYVG--NLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp SEEEEE--SCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345553 4556799999999999999999999863 45689999999999999999975 4446789999999865
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.91 E-value=2.5e-09 Score=79.66 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=56.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecC----C-CcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSS----K-KKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~----k-~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
.+..+|++.|+++|++||.|.+|.|... . .+|+|||+|.+.++|..|+. ++....+.+|.|.|..+
T Consensus 12 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 12 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 4567999999999999999999988532 2 78999999999999999998 45667789999999865
No 79
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1e-08 Score=79.63 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=57.7
Q ss_pred ecCCCCCHHHHHHHhcccCC-eeEEEEe-c----CCCcceEEEEecCHHHHHHHHHhh----cCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGK-VEDVVIK-S----SKKKGSALVVMATKSAAGAATGSV----CGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~-V~~v~i~-~----~k~~g~A~V~F~~~~~A~~Av~~~----~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|+.||. |.+|.|. . ++.+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 15 nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 15 GIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp CCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred CCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 45567999999999999999 9999885 2 367999999999999999999853 456789999999876
No 80
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=84.16 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=58.6
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCC--eeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCC------CCCC
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGK--VEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGN------LSNP 234 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~--V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g~------~~~p 234 (292)
+++|-|+ ..+...|++.|+++|++||. |.+|.|.. ++.+|+|||+|.+.++|..|+....|. .+.|
T Consensus 9 m~tlfV~--nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 9 MDTIILR--NIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCEEEEE--SCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred cCEEEEe--CCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4455554 34567999999999999995 67887742 567999999999999999999876653 4789
Q ss_pred eEEEecC
Q 022762 235 LLVLPLQ 241 (292)
Q Consensus 235 l~v~~~~ 241 (292)
|.|.|..
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999975
No 81
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.90 E-value=4.4e-09 Score=77.50 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+..+|++.|+++|+.||.|.+|.+.. +..+|+|||+|.+.++|..|+.. +.-..+.+|.|.|..+
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 456699999999999999999998852 55699999999999999999974 5556789999999864
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.90 E-value=1.5e-09 Score=83.08 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
....+|++.|+++|++||+|.++.+. ..+|||||+|.|.++|..|+.. ++.+.+.||.|.+..
T Consensus 15 L~~~~te~~L~~lF~q~G~V~~~~l~--~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCMQHGPLVSFHPY--LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCTTCCCHHHHHHHHHHSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccCCHHHHHHHHHhhCCEEEEEEc--CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45669999999999999999999984 3699999999999999999975 777888999998763
No 83
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=6.2e-09 Score=79.44 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=55.9
Q ss_pred eecCC-CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~-~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..... .+|++.|+++|++||.|.+|.|. +|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 16 ~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 16 GNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred eCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 45565 79999999999999999999993 79999999999999999985 4556689999999864
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.1e-08 Score=78.87 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 16 ~~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 16 ATVYVG--GLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TEEEEE--CCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 455553 4556799999999999999999999852 45789999999999999999984 556788999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 94 ~ 94 (105)
T 1x5u_A 94 A 94 (105)
T ss_dssp T
T ss_pred C
Confidence 5
No 85
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=4.5e-09 Score=79.71 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=59.1
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEE-EEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDV-VIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v-~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+|-|. .....+|++.|+++|+.||.|..| .|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 7 ~l~V~--nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 7 GIFIG--NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp EEEEE--CCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 45443 445669999999999999999998 7742 45689999999999999999984 445678999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 85 ~ 85 (96)
T 1x5t_A 85 K 85 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.89 E-value=6.9e-09 Score=78.05 Aligned_cols=72 Identities=24% Similarity=0.188 Sum_probs=60.2
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|++||.|..|.|. .++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 10 ~l~V--~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 10 QIFV--RNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp EEEE--CSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4444 3455679999999999999999999885 355789999999999999999984 5557789999999865
No 87
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.89 E-value=3.8e-09 Score=83.40 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=59.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-|. ..+..+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.+...
T Consensus 8 ~lfV~--nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 8 EVTFA--RLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEEE--SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred EEEEE--CCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 44443 3456799999999999999999998852 56799999999999999999975 5556889999999753
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.89 E-value=4e-09 Score=76.50 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~ 240 (292)
.+..+|++.|+++|++||+|.+|.+.. ++.+|+|||+|.+.++|..|+. +...+.+.+|.|.|.
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 455799999999999999999998852 5568999999999999999986 355567788888763
No 89
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=7.3e-09 Score=80.63 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=60.1
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--------hcCCCCCCeE
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--------VCGNLSNPLL 236 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--------~~g~~~~pl~ 236 (292)
+|-|. .....+|++.|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.
T Consensus 17 ~l~V~--nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 17 TVFIR--NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CEEEE--SCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred EEEEE--CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 45443 4556799999999999999999999852 45799999999999999999975 4557789999
Q ss_pred EEecCC
Q 022762 237 VLPLQP 242 (292)
Q Consensus 237 v~~~~~ 242 (292)
|.|..+
T Consensus 95 v~~a~~ 100 (111)
T 1x4h_A 95 VDLAVT 100 (111)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 999865
No 90
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.3e-09 Score=80.39 Aligned_cols=67 Identities=27% Similarity=0.334 Sum_probs=56.5
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|++||.|.+|.|. .+.+|+|||+|.+.++|..|+.......+.+|.|.|..+
T Consensus 11 ~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 11 GRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp ESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred eCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 4456679999999999999999999985 347899999999999999887665555678899998765
No 91
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.9e-09 Score=81.09 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=60.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 13 ~~l~V~--nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 13 RVLYVG--GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp SCEEEE--SCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEEe--CCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 345553 3455699999999999999999999842 45799999999999999999974 555678999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 92
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=9.2e-09 Score=78.74 Aligned_cols=70 Identities=27% Similarity=0.315 Sum_probs=59.0
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|++||.|..|.|. +.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 17 RLFV--GNLPPDITEEEMRKLFEKYGKAGEVFIH--KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp EEEE--ESCCTTCCHHHHHHHTSTTCCCSEEEEE--TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred EEEE--eCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 4444 4455679999999999999999999985 4589999999999999999975 4556789999999865
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.9e-09 Score=81.37 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=59.5
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCe----eEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKV----EDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V----~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.| ..+.+.+++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 27 ~l~V--~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 27 VLYL--KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp EEEE--ECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 4444 3456679999999999999999 455555677899999999999999999974 5567899999999875
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=8.4e-09 Score=79.71 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=60.0
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 25 ~l~V--~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 25 ILFV--TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEEE--ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 4444 34556799999999999999999999852 45689999999999999999974 5557789999999864
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.87 E-value=1.4e-08 Score=79.54 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=60.7
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~ 241 (292)
++|-| ......+|++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+. ++.-+.+.+|.|.|..
T Consensus 27 ~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 27 MRLYV--GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp EEEEE--ECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 34444 34556799999999999999999998852 4568999999999999999997 4666789999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 105 ~ 105 (108)
T 2jrs_A 105 E 105 (108)
T ss_dssp S
T ss_pred c
Confidence 5
No 96
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.87 E-value=8.1e-09 Score=81.09 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=60.3
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-|. ..+..+|++.|+++|+.||.|.+|.|. .+..+|+|||+|.+.++|..|+.. +....+.+|.|.|..+
T Consensus 10 ~l~V~--nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 10 ILYIR--NLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp EEEEE--SCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45443 345679999999999999999999986 456799999999999999999984 5567789999999864
No 97
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-08 Score=80.11 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=59.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|+++|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 16 ~~l~V--~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 16 STVFV--ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SCEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 34555 34556799999999999999999998853 44589999999999999999984 5556789999999864
No 98
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9.3e-09 Score=78.53 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=58.8
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|+.||.|. +.+..++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 20 ~~l~V--~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 20 ADVYV--GNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CEEEE--eCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34444 44566799999999999999997 4444567899999999999999999964 5566889999999865
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.1e-08 Score=78.16 Aligned_cols=72 Identities=24% Similarity=0.202 Sum_probs=59.0
Q ss_pred EEEeeecCCCCCHHHHH----HHhcccCCeeEEEEec-CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIKS-SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~----~~fs~yG~V~~v~i~~-~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-.......++++.|+ ++|++||.|.+|.|.. ...+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34444556679999999 9999999999999963 22289999999999999999985 4456789999999865
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.87 E-value=4e-09 Score=82.06 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=53.5
Q ss_pred CHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHh--hcCCCCC-CeEEEecCC
Q 022762 182 TAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGS--VCGNLSN-PLLVLPLQP 242 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~-pl~v~~~~~ 242 (292)
|++.|+++|++||.|.+|.|. +++.+|+|||+|.+.++|..|+.. +..+.+. +|.|.|..+
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 789999999999999999985 356799999999999999999985 5556787 999999854
No 101
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=5.8e-09 Score=78.85 Aligned_cols=73 Identities=25% Similarity=0.233 Sum_probs=59.8
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.++|-|. .....+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|.
T Consensus 15 ~~~l~v~--nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 15 NCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp GGCEEEE--SCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCEEEEE--CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 3455553 4556799999999999999999999852 45689999999999999999984 45567899999987
Q ss_pred C
Q 022762 241 Q 241 (292)
Q Consensus 241 ~ 241 (292)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.87 E-value=4.4e-09 Score=77.87 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=56.8
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
+|-|. ..+..+|++.|+++|++||.|.+|.|. ++..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|.
T Consensus 9 ~l~V~--nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 9 VLYVG--GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EEEEE--CCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEE--CCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44443 344569999999999999999999884 245799999999999999999964 55567788999885
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=4.9e-09 Score=77.75 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=56.2
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh---hcCCCCCCeEEEec
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS---VCGNLSNPLLVLPL 240 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~---~~g~~~~pl~v~~~ 240 (292)
+|-| ...+..+|++.|+++|++||.|..|.+.. .+|+|||+|.+.++|..|+.. .....+.+|.|.|.
T Consensus 14 ~l~V--~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 14 TLYV--GGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CEEE--ECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EEEE--cCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4544 34556799999999999999999999853 579999999999999999984 44566788998885
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.1e-08 Score=80.23 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=56.9
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCC----------CCCCeEEEecC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGN----------LSNPLLVLPLQ 241 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g~----------~~~pl~v~~~~ 241 (292)
......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+....|. .+.||.|.|..
T Consensus 31 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 31 SNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 44556799999999999999999998853 456899999999999999999864443 47899999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
|
T Consensus 111 p 111 (114)
T 1x5o_A 111 P 111 (114)
T ss_dssp C
T ss_pred C
Confidence 5
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.86 E-value=1.5e-08 Score=80.87 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=60.6
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 36 ~~l~V--~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 36 AKLLV--SNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp EEEEE--ESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 34444 34556799999999999999999999853 45789999999999999999984 5557789999999865
No 106
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.86 E-value=2.7e-09 Score=80.92 Aligned_cols=66 Identities=27% Similarity=0.354 Sum_probs=53.5
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|++||.|.+|.|.. +.+|+|||+|.+.++|..+.+......+.++.|.|..|
T Consensus 18 ~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 18 RCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp SCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 3566799999999999999999999853 47999999999999999665544444577888888764
No 107
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.86 E-value=7.1e-09 Score=81.52 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=59.4
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 27 ~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 27 NLFI--YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp CEEE--ESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 4444 34556799999999999999999998852 45689999999999999999975 4456789999999875
No 108
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.86 E-value=4.9e-09 Score=84.15 Aligned_cols=69 Identities=29% Similarity=0.305 Sum_probs=59.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. +..+|++.|+++|++||.|.+|.|. +.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 40 ~~lfVg----nl~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 40 NTLYVY----GEDMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CEEEEE----CSSCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CEEEEc----CCCCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 456664 2469999999999999999999984 6789999999999999999964 6667899999999875
No 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.86 E-value=1.2e-09 Score=101.45 Aligned_cols=65 Identities=37% Similarity=0.625 Sum_probs=55.0
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHccCchhhhhHHH
Q 022762 6 VDHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDD---PDAHDNFQKLKSSYEILKDEKARKLFDD 75 (292)
Q Consensus 6 ~d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 75 (292)
.++|.+||+... ++..+|+++|+++++.+|||+.+++ +.+...|..|.+||++|+||.+|..||.
T Consensus 382 ~~~y~~lg~~~~-----~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRN-----AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTT-----CCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCcc-----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 489999999997 7889999999999999999999854 2478899999999999999999999996
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.86 E-value=5.8e-09 Score=78.96 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=58.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|++||.|.+|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 17 ~~l~v~--nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 17 RTVFVG--NLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GEEEEE--CCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEE--CCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 345553 4556799999999999999999999853 45689999999999999999984 555678899999864
No 111
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.85 E-value=2e-09 Score=83.18 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCC-CCeEEEecCC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLS-NPLLVLPLQP 242 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~-~pl~v~~~~~ 242 (292)
..+++.|+++|++||.|.+|.|+. ++.+|+|||+|.+.++|..|+.. +.-+.+ .+|.|.|..|
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 688999999999999999999852 56799999999999999999974 555666 8999999854
No 112
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.85 E-value=7e-09 Score=78.96 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=57.2
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +....+.+|.|.|..+
T Consensus 9 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 9 SIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 3456799999999999999999999852 45699999999999999999975 4456789999999865
No 113
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=3.6e-09 Score=80.00 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=57.3
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCC-eeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC---CCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGK-VEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG---NLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~-V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g---~~~~pl~v~~~~~ 242 (292)
+|-| ......+|+++|+++|++||. |..+.+ .++|+|||+|.+.++|..|+....| +.+.+|.|.|..+
T Consensus 10 ~l~V--~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 10 KLYI--GNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CEEE--ECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4444 345667999999999999999 777766 3589999999999999999986555 7889999999875
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=8.6e-09 Score=79.28 Aligned_cols=66 Identities=24% Similarity=0.201 Sum_probs=57.1
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 445699999999999999999998852 45589999999999999999974 6667899999999865
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=2.4e-08 Score=75.38 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=55.6
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|++||.|..|.|. +++|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 16 ~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 16 GNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3456679999999999999999999994 56999999999999999974 5556789999999875
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=5.7e-09 Score=81.77 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=60.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec--CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS--SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 30 ~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 30 KRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CEEEE--ESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEE--ECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34444 45566799999999999999999999852 44689999999999999999985 4456789999999864
No 117
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.2e-08 Score=80.28 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=57.8
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 33 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 33 GGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp ECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 44566799999999999999999999853 45689999999999999999975 3446788999999865
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.83 E-value=6.3e-09 Score=78.09 Aligned_cols=65 Identities=29% Similarity=0.386 Sum_probs=55.2
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....+++++|+++|+.||.|.+|.|.. ++.+|+|||+|.+.+ |..|+.. +....+.+|.|.|..+
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 455699999999999999999999852 556999999999999 9999985 5667899999999865
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.83 E-value=1.9e-08 Score=77.60 Aligned_cols=69 Identities=28% Similarity=0.302 Sum_probs=57.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ......+|++.|+++|++||.|..|.|. +|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 12 ~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 12 KVLFV--RNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCEEE--ECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 34554 3455679999999999999999999983 67999999999999999984 5556789999999875
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=6.7e-09 Score=75.42 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=54.6
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~ 240 (292)
.+..+|++.|+++|++||+|.+|.+.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|.
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 455799999999999999999999853 45689999999999999999974 36667889998874
No 121
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.83 E-value=7.2e-09 Score=80.76 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=57.7
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 32 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 32 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 34556799999999999999999999852 45689999999999999999984 4456789999999864
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.83 E-value=7.2e-09 Score=76.53 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=46.9
Q ss_pred CHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHh--hcCCCCC-CeEE
Q 022762 182 TAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGS--VCGNLSN-PLLV 237 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~-pl~v 237 (292)
|++.|+++|++||.|.+|.|. +++.+|+|||+|.+.++|..|+.. +..+.+. ||.|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 789999999999999999985 356799999999999999999985 4444555 6654
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.4e-09 Score=80.73 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=56.0
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|.+|.|. +.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 33 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 33 GNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4455679999999999999999999985 5689999999999999999975 4445688899988753
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.82 E-value=4e-09 Score=80.18 Aligned_cols=72 Identities=25% Similarity=0.420 Sum_probs=59.4
Q ss_pred eEEEEeeecCCCCCHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~----~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+|-|. .....+|++.|+ ++|++||.|.+|.|. +++.+|+|||+|.+.++|..|+.. +....+.+|.|.|..
T Consensus 10 ~l~V~--nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 10 TIYIN--NLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp EEEEE--SCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEEEe--CCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 45443 455679999999 999999999999985 345689999999999999999974 445678999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 88 ~ 88 (97)
T 1nu4_A 88 T 88 (97)
T ss_dssp S
T ss_pred C
Confidence 5
No 125
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.82 E-value=1.2e-08 Score=76.06 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=55.3
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
.+..+|++.|+++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 455689999999999999999998852 4569999999999999999993 24446678999999864
No 126
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1e-08 Score=77.36 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=59.0
Q ss_pred cceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 167 EKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
.++|-|. .....+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|.
T Consensus 16 ~~~l~V~--nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYVS--NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSEEEE--SCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCEEEEE--CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3456664 4456799999999999999999999853 45689999999999999999974 44467889999885
No 127
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.7e-08 Score=75.42 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=57.4
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEE-EEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDV-VIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v-~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..| .|...+..|.|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 21 RNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp EEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred EcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3455679999999999999999999 465555667799999999999999974 5666789999999875
No 128
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-08 Score=77.28 Aligned_cols=66 Identities=26% Similarity=0.324 Sum_probs=55.9
Q ss_pred eecCCCCCHHHHHHHhcccCCeeE--------EEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEec
Q 022762 175 EKFGEDYTAERLREIFSEFGKVED--------VVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPL 240 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~--------v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~ 240 (292)
......+|++.|+++|++||.|.. |.|.. ++.+|+|||+|.+.++|..|+. ++..+.+.+|.|.|.
T Consensus 19 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 19 QGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp ECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 345567999999999999999998 77742 4568999999999999999997 466678899999885
No 129
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=8.1e-09 Score=81.29 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=60.7
Q ss_pred cceEEEEeeecCCCC---------CHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCCCCCe
Q 022762 167 EKVLKVSWEKFGEDY---------TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNLSNPL 235 (292)
Q Consensus 167 ~~~lkvKWk~~~~~~---------t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~--g~~~~pl 235 (292)
.++|.|+.-.....+ +++.|+++|++||.|.+|.|.....+|+|||+|.+.++|..|+.... -+.+.+|
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 94 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEEC
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 457888766433221 36899999999999999988655579999999999999999998644 3578899
Q ss_pred EEEecCC
Q 022762 236 LVLPLQP 242 (292)
Q Consensus 236 ~v~~~~~ 242 (292)
.|.|..+
T Consensus 95 ~v~~a~~ 101 (112)
T 2dit_A 95 TAQAWDG 101 (112)
T ss_dssp EEEECCS
T ss_pred EEEEeCC
Confidence 9999865
No 130
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.81 E-value=1.3e-08 Score=83.83 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=59.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ...+..+|++.|+++|+.||.|.+|.|.. .++|+|||+|.+.++|..|+.. +..+.+.||.|.|..+
T Consensus 74 ~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 74 CKVYV--GNLGNNGNKTELERAFGYYGPLRSVWVAR-NPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CEEEE--ESCCSCCSCHHHHHHHHHHSCEEEEEECS-SSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhhCCEEEEEEee-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34444 34556789999999999999999999853 3689999999999999999974 5667899999999865
No 131
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.81 E-value=1.4e-08 Score=82.33 Aligned_cols=73 Identities=25% Similarity=0.197 Sum_probs=60.8
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-| ......+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..
T Consensus 47 ~~l~V--~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 47 CCLGV--FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp SCBCE--ETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34444 34566799999999999999999999852 46799999999999999999984 556778999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 125 ~ 125 (129)
T 2kxn_B 125 T 125 (129)
T ss_dssp S
T ss_pred C
Confidence 4
No 132
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=3.9e-08 Score=77.37 Aligned_cols=72 Identities=25% Similarity=0.227 Sum_probs=59.2
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhc-CCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVC-GNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~-g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.... -+.+.+|.|.|..+
T Consensus 19 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 19 KIFV--GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 95 (116)
T ss_dssp EEEE--ECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence 4544 44556799999999999999999999852 4578999999999999999997633 35678999999864
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.80 E-value=1.5e-08 Score=77.77 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=57.6
Q ss_pred cceEEEEeeecCC-CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh--cCCCCCCeEEEecCC
Q 022762 167 EKVLKVSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV--CGNLSNPLLVLPLQP 242 (292)
Q Consensus 167 ~~~lkvKWk~~~~-~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~--~g~~~~pl~v~~~~~ 242 (292)
.++|-| ..... .+|++.|+++|+.||.|..|.| .+|+|||+|.+.++|..|+... ..+.+.+|.|.|..+
T Consensus 22 ~~~l~V--~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 22 KSRLFI--GNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp TCEEEE--ESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCEEEE--eCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345555 34555 7999999999999999999998 3899999999999999999864 334689999999764
No 134
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=2.1e-08 Score=78.18 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=56.4
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CCCC-----CCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GNLS-----NPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~--g~~~-----~pl~v~~~~~ 242 (292)
+|-.......+|+++|+++|++||.|..|.|..+ |+|||+|.+.++|..|+.... .+.+ .+|.|.|..+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 3333455677999999999999999999998533 999999999999999998533 3344 7899999875
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-08 Score=78.05 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=56.5
Q ss_pred eecCCCCCHHHHHHHhcccCCee-EEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCC----eEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVE-DVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNP----LLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~-~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~p----l~v~~~~~ 242 (292)
......+|+++|+++|++||.|. +|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+ |.|.|..+
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 15 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp CSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 44556799999999999999999 988852 45689999999999999999985 44456677 99999865
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.80 E-value=1e-08 Score=80.43 Aligned_cols=64 Identities=28% Similarity=0.333 Sum_probs=56.2
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|++||.|..|.|. +|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 37 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 37 RPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4456679999999999999999999995 89999999999999999974 5556889999999865
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-08 Score=75.88 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=57.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|++||.|..|.|. +|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 10 ~~l~V~--nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 10 WKIFVG--NVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCEEEE--SCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 345443 345569999999999999999999984 56999999999999999985 4556789999999875
No 138
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.80 E-value=1.4e-08 Score=81.01 Aligned_cols=72 Identities=25% Similarity=0.306 Sum_probs=59.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
+|-|. .....+|++.|.++|++||.|.+|.|. +++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 24 ~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 24 ILFVT--GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp EEEEE--SCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 44443 345669999999999999999999985 24569999999999999999996 46667889999999865
No 139
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.79 E-value=1.4e-08 Score=79.61 Aligned_cols=75 Identities=13% Similarity=-0.043 Sum_probs=58.4
Q ss_pred ceEEEEeeecCC---CCCHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEE
Q 022762 168 KVLKVSWEKFGE---DYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLV 237 (292)
Q Consensus 168 ~~lkvKWk~~~~---~~t~~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v 237 (292)
++|.|+--.... .-++++|+++|++||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 467776444322 236899999999999999999853 35699999999999999999985 44467889999
Q ss_pred EecCC
Q 022762 238 LPLQP 242 (292)
Q Consensus 238 ~~~~~ 242 (292)
.|..+
T Consensus 89 ~~a~~ 93 (105)
T 2pe8_A 89 CFYNL 93 (105)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 98753
No 140
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.79 E-value=2.2e-08 Score=81.15 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-| ......+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 43 ~~l~V--~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 43 RNLMV--NYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp SEEEE--ESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45555 45566799999999999999999998852 44699999999999999999984 555788999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 121 ~ 121 (139)
T 1u6f_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 5
No 141
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.79 E-value=1e-08 Score=81.40 Aligned_cols=71 Identities=8% Similarity=0.053 Sum_probs=59.6
Q ss_pred EEeeecCCCCCHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
|--......+|+++|+++|+.|| .|..|.|...+.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|...
T Consensus 31 l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 33345567799999999999999 99999985566899999999999999999974 5556788999999753
No 142
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.79 E-value=1.4e-08 Score=78.64 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=58.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+|-|. .....+|++.|+++|+.||.|..|.|. +++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|+.
T Consensus 31 ~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 31 KLLVS--NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEE--SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45444 455679999999999999999999885 245689999999999999999984 555678899998863
No 143
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=1.2e-08 Score=77.78 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|+++|+++|+.||.|..+.+. +++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 17 ~l~v--~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 17 IIKV--QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEE--ESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 4444 4456679999999999999999865543 245689999999999999999975 3456789999999764
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.78 E-value=1.3e-08 Score=79.76 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=59.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 26 ~~lfV~--nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 26 CKMFIG--GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 103 (109)
T ss_dssp CCEEEE--SCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence 345443 3456799999999999999999999853 55689999999999999999975 3555678999999864
No 145
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.8e-08 Score=78.78 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=59.3
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCee--------EEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVE--------DVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSN 233 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~--------~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~ 233 (292)
++|-|. .....+|++.|+++|+.||.|. .|.|.. ++.+|+|||+|.+.++|..|+. +...+.+.
T Consensus 16 ~~l~V~--nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 16 SAIYVQ--GLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CEEEEE--CCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEc--CCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 345543 4556799999999999999999 577742 4568999999999999999997 45556789
Q ss_pred CeEEEecCC
Q 022762 234 PLLVLPLQP 242 (292)
Q Consensus 234 pl~v~~~~~ 242 (292)
+|.|.|..+
T Consensus 94 ~l~V~~a~~ 102 (113)
T 2cpe_A 94 KLKVSLARK 102 (113)
T ss_dssp ECEEECSSC
T ss_pred EEEEEECCC
Confidence 999999875
No 146
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.78 E-value=6.8e-09 Score=75.14 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=51.9
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEe
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLP 239 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~ 239 (292)
.+..+|++.|+++|++||+|.+|.+.. ++.+|+|||+|.+.++|..|+.. .....+.+|.|.|
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 345699999999999999999998852 55799999999999999999975 3445566777665
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.78 E-value=2.3e-08 Score=82.70 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=59.2
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.......+|+++|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.||.|.|..+
T Consensus 75 v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 344566799999999999999999999852 56799999999999999999974 5557789999999875
No 148
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=1.3e-08 Score=79.83 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=57.1
Q ss_pred eecCCCCCHHHHH---HHhcccCCeeEEEEecC-------CCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLR---EIFSEFGKVEDVVIKSS-------KKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~---~~fs~yG~V~~v~i~~~-------k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...+..+++++|. ++|++||+|.+|.|... +.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 21 ~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 21 VGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp EEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred ECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 3355679999999 99999999999998532 3459999999999999999984 5556789999999875
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.77 E-value=2e-08 Score=81.96 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=61.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+. +...+.+.+|.|.|..
T Consensus 48 ~~l~V~--nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 48 TSLKVD--NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp CCEEEE--CCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 345554 4455699999999999999999999852 4679999999999999999997 4666788999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 126 ~ 126 (135)
T 2lea_A 126 Y 126 (135)
T ss_dssp C
T ss_pred C
Confidence 5
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.76 E-value=1.6e-08 Score=83.82 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=60.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|+++|.++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..
T Consensus 40 ~~l~V~--nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 40 CTLYVG--NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp CEEEEE--SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 345553 4556799999999999999999999852 45689999999999999999984 555678999999987
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 118 ~ 118 (156)
T 1h2v_Z 118 G 118 (156)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=9.5e-09 Score=79.39 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=56.8
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 22 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 22 GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp BSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 34556799999999999999999998853 45689999999999999999984 4445678899998765
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.76 E-value=2.8e-08 Score=78.99 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=59.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
++|-|.. ....+|++.|+++|++||.|.+|.|. ++..+|+|||+|.+.++|..|+. ++..+.+.+|.|.|..+
T Consensus 37 ~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 37 RSVYVGN--VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp TEEEEEE--ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CEEEEeC--CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 3565543 44569999999999999999999884 25679999999999999999993 24446789999999864
No 153
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.75 E-value=2.2e-08 Score=74.56 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=54.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEe
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLP 239 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~ 239 (292)
+|-| ...+..+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|
T Consensus 13 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 13 KMFV--GGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp EEEE--ECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4544 34556799999999999999999999852 55699999999999999999964 2335566777765
No 154
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.75 E-value=2.4e-08 Score=78.72 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=56.4
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
|-.......+|++.|+++|++||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|.
T Consensus 43 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 33344566799999999999999999999852 45699999999999999999985 44456788888875
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.73 E-value=5.3e-08 Score=83.45 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=58.3
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+. ++.-+.+.+|.|.|..+
T Consensus 131 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 131 ASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp ECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred eCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 34455699999999999999999999852 4568999999999999999998 46667899999999865
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.73 E-value=1.6e-08 Score=76.75 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=59.3
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|+.||.|..| ...++.+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 17 ~~l~V~--nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 17 RTLLAK--NLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GEEEEE--SCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CEEEEe--CCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 345543 455679999999999999999888 33577899999999999999999984 5556789999999865
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.73 E-value=2.7e-08 Score=77.62 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=56.9
Q ss_pred eEEEEeeecCCC-CCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~-~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ...... +|++.|+++|++||.|..|.| .+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 29 ~l~V--~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 29 RVFI--GNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp EEEE--CSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred EEEE--eCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4444 345566 899999999999999999998 579999999999999999975 4445789999999864
No 158
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.73 E-value=3.4e-08 Score=79.67 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=57.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
++|-| ......+|++.|+++|++||.|..|.|.. ++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|.
T Consensus 64 ~~l~v--~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 64 RVLYV--GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CEEEE--ECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred cEEEE--EeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34444 45566799999999999999999999852 55799999999999999999974 44466888888763
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=5e-08 Score=74.58 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=56.8
Q ss_pred eEEEEeeecCCCCCHHHHHHHhccc--CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEF--GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~y--G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|++| |.|..|.+ .+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 17 ~l~V--~nLp~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 17 ILYV--RNLMLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4444 3455679999999999999 99999987 378999999999999999984 5556789999999875
No 160
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.7e-08 Score=77.34 Aligned_cols=73 Identities=23% Similarity=0.199 Sum_probs=57.0
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|++||.|.-+....++.+|+|||+|.+.++|..|+.. ...+.+.+|.|.|..+
T Consensus 16 ~~l~V~--nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 16 KTLVLS--NLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp SEEEEE--SCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 455553 455669999999999999998322212356799999999999999999984 4456789999999875
No 161
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.8e-08 Score=74.70 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=52.2
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEe
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP 239 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~ 239 (292)
...+..++++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.++++.|
T Consensus 11 ~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 11 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp ESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34566799999999999999999998853 45689999999999999999985 4445555555544
No 162
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=8.5e-08 Score=73.93 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=57.2
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.|-.......+|+++|+++|+.|| |.+|.|.. ++.+|+|||+|.+.++|..|+ . ..-+.+.+|.|.|..+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 333345566799999999999999 99999852 456899999999999999999 5 3345688999999865
No 163
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.3e-08 Score=78.43 Aligned_cols=72 Identities=28% Similarity=0.337 Sum_probs=58.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 27 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 27 TVFC--MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 4444 34556799999999999999999999852 4578999999999999999993 24456789999999754
No 164
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=9.3e-08 Score=73.56 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=55.3
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.|| |.+|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 21 GNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp ESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecC
Confidence 34566799999999999998 99998852 4568999999999999999993 23345688999999865
No 165
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.71 E-value=2.8e-08 Score=83.37 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=57.3
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|..+|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 79 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 79 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4556799999999999999999999852 44689999999999999999975 4446789999999864
No 166
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=7.8e-08 Score=74.50 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=58.2
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
+|-........|+++|+++|+.||.|.+ |.|. +++.+|+|||+|.+.++|..|+.. ..-+.+.++.|.+..+
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 4444556678999999999999999998 6664 356799999999999999999975 4455678899988653
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.70 E-value=5.2e-08 Score=83.21 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=59.9
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
|--......+|++.|.++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|+.+
T Consensus 91 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 91 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp EEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 33345566799999999999999999999853 55789999999999999999984 5667889999999864
No 168
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.70 E-value=2e-07 Score=83.53 Aligned_cols=75 Identities=25% Similarity=0.451 Sum_probs=61.3
Q ss_pred ceEEEEeee---------cCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHhh------cC
Q 022762 168 KVLKVSWEK---------FGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGSV------CG 229 (292)
Q Consensus 168 ~~lkvKWk~---------~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~~------~g 229 (292)
+.|+|.|.. .+..+|++.|+++|+.||.|..|.|. +++.+|+|||+|.+.++|..|+... .+
T Consensus 86 ~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 86 RPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp EECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred ceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 356666664 34568999999999999999999885 2567999999999999999999863 33
Q ss_pred CCCCCeEEEecCC
Q 022762 230 NLSNPLLVLPLQP 242 (292)
Q Consensus 230 ~~~~pl~v~~~~~ 242 (292)
..+.|+.|.|..+
T Consensus 166 ~~~r~i~v~~~~~ 178 (261)
T 3sde_A 166 TTPRPVIVEPMEQ 178 (261)
T ss_dssp SSCCBCEEEECCC
T ss_pred CCCceEEEeeccc
Confidence 4488999999865
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.69 E-value=3.9e-08 Score=80.41 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=56.3
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
..+..+|++.|+++|+.||.|..|.+.. +..+|+|||+|.+.++|..|+.. +.-..+.+|.|.|..
T Consensus 94 nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 94 DLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 3455799999999999999999998852 46689999999999999999974 555678999999975
No 170
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.68 E-value=2.4e-08 Score=76.77 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=57.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
++|-| ......+|++.|+++|+.|| |.+|.|.. ++.+|+|||+|.+.++|..|+. ++..+.+.+|.|.|..
T Consensus 20 ~~l~V--~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 20 YTAFL--GNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp CEEEE--SCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred cEEEE--eCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 34444 34556699999999999999 99999852 4469999999999999999993 2555678899999876
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 97 ~ 97 (100)
T 2j76_E 97 Q 97 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.68 E-value=8.1e-08 Score=79.33 Aligned_cols=66 Identities=26% Similarity=0.438 Sum_probs=54.9
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CC---CCCeEEEec
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NL---SNPLLVLPL 240 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g--~~---~~pl~v~~~ 240 (292)
...+..+|++.|+++|++||.|..|.+.. +..+|+|||+|.+.++|..|+....| .. +.||.|.|.
T Consensus 101 ~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 101 GMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred cCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 34556799999999999999999998852 45689999999999999999986444 33 389999986
No 172
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.67 E-value=1.5e-08 Score=77.84 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=57.3
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.+...+.+.+|.|.|..+
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 15 GGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 34556799999999999999999998853 456899999999999999999965566778899988653
No 173
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.67 E-value=4.5e-08 Score=79.89 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=58.5
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeE--------EEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEE
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVED--------VVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLV 237 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~--------v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v 237 (292)
+|-|. .....+|++.|+.+|+.||.|.. |.+. +++.+|+|||+|.+.++|..|+.. +..+.+.+|.|
T Consensus 47 ~l~V~--nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 47 RIYVK--NLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp EEEEE--EECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred EEEEe--CCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44443 34557999999999999999976 4333 478899999999999999999974 56677899999
Q ss_pred EecCC
Q 022762 238 LPLQP 242 (292)
Q Consensus 238 ~~~~~ 242 (292)
.|..+
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99864
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.66 E-value=3e-08 Score=86.46 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 179 EDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 179 ~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+|++.|+++|+.||.|.+|.|. ..++|+|||+|.+.++|..|+.. +..+.+.+|.|.|...
T Consensus 15 ~~~~~~~L~~~F~~~G~v~~v~i~-~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 15 SKMNCDRVFNVFCLYGNVEKVKFM-KSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEC-TTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 569999999999999999999885 34689999999999999999974 6667889999999753
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.65 E-value=9.1e-08 Score=78.68 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=57.4
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|++||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..|
T Consensus 94 nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 94 GIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp EECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 3455799999999999999999999852 55789999999999999999973 5566789999999865
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=3.7e-08 Score=76.28 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=51.7
Q ss_pred ecCCCCCHHH----HHHHhccc-CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAER----LREIFSEF-GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~----L~~~fs~y-G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+...+++. |+++|++| |.|.+|+ + |+|||+|.+.++|.+|+.. +..+++.||+|.+..+
T Consensus 16 NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 16 NLPANKDGKSVSNRLRRLSDNCGGKVLSIT---G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SCCTTSCHHHHHHHHHHHHHTTTCCEEECC---T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 3556678776 66999999 5999993 2 9999999999999999974 7778999999999864
No 177
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.8e-08 Score=78.29 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=58.0
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCe-eEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKV-EDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V-~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
|-.......+|+++|+++|+.||.| .+|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 18 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp EEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred EEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 3334556679999999999999999 7888752 55799999999999999999975 4445778999999864
No 178
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3e-08 Score=79.23 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=57.1
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeE-EEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVED-VVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~-v~i~---~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
+|-.......+|+++|+++|+.||.|.+ ++|. +++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..
T Consensus 27 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4444456677999999999999999987 3442 25679999999999999999997 3555678899999875
No 179
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.64 E-value=5e-08 Score=77.13 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=51.7
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEe
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP 239 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~ 239 (292)
|-.......+|+++|.++|++||.|..|.|... |+|||+|.+.++|..|+.. ...+.+.+|.|.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 333455677999999999999999999998532 9999999999999999985 4445677744443
No 180
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.64 E-value=7.1e-08 Score=77.82 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=55.2
Q ss_pred ecCCCCCHHHHHHHhcccCCeeE--EEEe----cCCCcceEEEEecCHHHHHHHHHhhc------CCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVED--VVIK----SSKKKGSALVVMATKSAAGAATGSVC------GNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~--v~i~----~~k~~g~A~V~F~~~~~A~~Av~~~~------g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|++||.|.. |.|. +++.+|||||+|.+. +|..|+.... .+.+.+|.|.|..+
T Consensus 30 nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 30 NLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp SCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred CCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 35567999999999999999966 7764 256799999999999 9999998644 45788999999876
No 181
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.63 E-value=3.4e-08 Score=78.85 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=58.2
Q ss_pred ceEEEEeeecCC--------CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEE
Q 022762 168 KVLKVSWEKFGE--------DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLV 237 (292)
Q Consensus 168 ~~lkvKWk~~~~--------~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v 237 (292)
++|.|+--.... .--+++|++.|++||.|.+|.|.....+|+|||+|.+.++|..|+.. +..+.+.+|.|
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v 87 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 87 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 456666555222 12346789999999999999995444689999999999999999985 45567899999
Q ss_pred EecCC
Q 022762 238 LPLQP 242 (292)
Q Consensus 238 ~~~~~ 242 (292)
.|..+
T Consensus 88 ~~~~~ 92 (114)
T 3s6e_A 88 AYVPL 92 (114)
T ss_dssp EEECH
T ss_pred EEEcH
Confidence 99753
No 182
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.63 E-value=5.3e-08 Score=81.55 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=57.3
Q ss_pred ecCCCCCHHHHHHHhcccC--CeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFG--KVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG--~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|+.|| .|.+|.|. +++.+|||||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 62 nLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 62 SFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp CCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred CCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 3556799999999999999 99999885 256799999999999999999986 5556788999998753
No 183
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.63 E-value=2.9e-08 Score=75.05 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=56.2
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
+|-| ......+|+++|+++|+.||.|..+.+.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.+..
T Consensus 17 ~l~V--~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 17 VIKV--QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEE--ECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4444 44556799999999999999998766532 45689999999999999999974 555677888888753
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.62 E-value=1.2e-07 Score=80.03 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=59.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
++|-| ...+..+|++.|+++|+.||.|.+|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 14 ~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 14 RKLFI--GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GEEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 44555 35566799999999999999999998852 45689999999999999999975 3335678899998754
No 185
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.62 E-value=4e-08 Score=75.31 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=57.5
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
+|--......+|++.|+++|+.||.|..+++. +++.+|+|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 34444566679999999999999999883332 26679999999999999999996 34455689999999865
No 186
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.62 E-value=4.9e-08 Score=76.32 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHh-cccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHhhcC--CCCCCeEEEec
Q 022762 186 LREIF-SEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGSVCG--NLSNPLLVLPL 240 (292)
Q Consensus 186 L~~~f-s~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~pl~v~~~ 240 (292)
|++.| ++||.|.+|.|.. ++.+|+|||+|.+.++|..|+....| +.+.+|.|.|.
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 44445 9999999999953 34699999999999999999986444 57788888875
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.61 E-value=1.6e-07 Score=76.84 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=51.8
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCC--CCeEEEec
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLS--NPLLVLPL 240 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~--~pl~v~~~ 240 (292)
.+..+|++.|+++|++||.|..|.+.. +..+|+|||+|.+.++|..|+.. +.-+.+ .||.|.|.
T Consensus 96 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 96 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 445689999999999999999998852 44589999999999999999985 333333 57888874
No 188
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-07 Score=70.71 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=55.5
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
......+|+++|+++|+.| .|..|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 16 ~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 16 RGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp ECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred ECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 4456679999999999999 899998852 5569999999999999999997 23335678999999865
No 189
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.4e-07 Score=76.98 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+..+|++.|+++|++||+|.+|.+.. ++.+|+|||+|.+.++|..|+.. +....+.+|.|.|..+
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 345689999999999999999999852 55789999999999999999964 5556788999999865
No 190
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.61 E-value=1.6e-07 Score=77.10 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=53.3
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcC--C--CCCCeEEEec
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCG--N--LSNPLLVLPL 240 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g--~--~~~pl~v~~~ 240 (292)
..+..+|++.|+++|++||.|..|.+.. ++.+|+|||+|.+.++|..|+....| + .+.||.|.|.
T Consensus 96 nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 96 NLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 3455799999999999999999998852 44589999999999999999985333 3 3389999874
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.60 E-value=5e-08 Score=80.30 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=57.0
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~~~~ 242 (292)
...+..+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.....+.+.+|.+.|..+
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 34556799999999999999999999852 567899999999999999999976666777888877643
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.60 E-value=4.8e-08 Score=76.54 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=56.8
Q ss_pred ceEEEEeeecCCCC--------CHHHHHHHhcccCCeeEEEEec------CCCcceEEEEecCHHHHHHHHHh--hcCCC
Q 022762 168 KVLKVSWEKFGEDY--------TAERLREIFSEFGKVEDVVIKS------SKKKGSALVVMATKSAAGAATGS--VCGNL 231 (292)
Q Consensus 168 ~~lkvKWk~~~~~~--------t~~~L~~~fs~yG~V~~v~i~~------~k~~g~A~V~F~~~~~A~~Av~~--~~g~~ 231 (292)
++|.|+--...... .+++|++.|++||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +.-+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45666655432222 3478999999999999999953 14689999999999999999986 44456
Q ss_pred CCCeEEEecC
Q 022762 232 SNPLLVLPLQ 241 (292)
Q Consensus 232 ~~pl~v~~~~ 241 (292)
+.+|.|.+..
T Consensus 86 GR~i~v~~~~ 95 (105)
T 3v4m_A 86 NRVVVTKYCD 95 (105)
T ss_dssp TEECEEEEEC
T ss_pred CCEEEEEEeC
Confidence 8899999874
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.60 E-value=9.3e-08 Score=78.21 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=57.1
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|+.||.|.+|.+.. ++.+|+|||+|.+.++|..|+.. +....+.+|.|.|..+
T Consensus 9 nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 9 YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4556799999999999999999998852 45679999999999999999974 5556789999999865
No 194
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.5e-07 Score=71.20 Aligned_cols=70 Identities=29% Similarity=0.272 Sum_probs=53.0
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
|-.......+|++.|+++|+.||.|.+|++.....+ +|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 11 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 11 VFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 333455667999999999999999999854222222 99999999999999998 22334578888887653
No 195
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=5.7e-08 Score=76.53 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=51.9
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec-------CCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEE
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS-------SKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVL 238 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~-------~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~ 238 (292)
++|-| ......+|++.|+++|++||.|. +.+.. ++.+|+|||+|.+.++|..|+....++-+..+.+.
T Consensus 9 ~~lfV--gnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 9 RKVFV--GGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCEEE--ECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CEEEE--cCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34444 34556799999999999999999 65532 36699999999999999999987654445545444
No 196
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.59 E-value=9.1e-08 Score=83.11 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeEEEEe--cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVEDVVIK--SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~v~i~--~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
....+|++.|+++|+.||.|..|.|. .+..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 111 l~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 111 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45579999999999999999999885 245689999999999999999975 5556788999999865
No 197
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.58 E-value=8.4e-08 Score=78.85 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=57.4
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...+..+|++.|+++|+.||+|.+|.+.. +..+|+|||+|.+.++|..|+.. +....+.+|.|.|..+
T Consensus 9 ~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 9 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 34556799999999999999999998842 44679999999999999999974 5555789999999865
No 198
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.6e-07 Score=72.85 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
.+|-| .......|+++|+++|+.||.| .|.|. +++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.+..+
T Consensus 16 ~~l~V--~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 16 HCVHM--RGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp CEEEE--ESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CEEEE--eCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 34544 4556679999999999999955 87774 256799999999999999999953 4445678889988654
No 199
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.57 E-value=9.9e-08 Score=84.70 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred eecCCCCCHHHHHHHhcccC--CeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFG--KVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG--~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
......+|++.|+++|+.|| .|..|.|.. ++.+|||||+|.+.++|..||.. ...+.+.+|.|.|..+
T Consensus 74 gnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 74 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp ESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred eCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 34556799999999999999 999998852 56799999999999999999974 5667889999999754
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.56 E-value=7.8e-08 Score=86.35 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=50.7
Q ss_pred CHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc--CC------------CCCCeEEEecCC
Q 022762 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC--GN------------LSNPLLVLPLQP 242 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~--g~------------~~~pl~v~~~~~ 242 (292)
+++.|+.+|++||+|.+|.|. ..+|+|||+|.+.++|+.|+.... .+ .+.+|.|.|..+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~--~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYV--ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEE--GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEE--CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 799999999999999999985 358999999999999999997633 33 467999999864
No 201
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.56 E-value=9.1e-08 Score=82.70 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=58.4
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
++|-|. ..+...|++.|+++|++||.|.+|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..+
T Consensus 110 ~~l~V~--nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIK--GFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEE--CCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred CEEEec--CCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 345553 2445699999999999999999998852 55789999999999999999975 3345678999998653
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.55 E-value=1.5e-07 Score=79.45 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=55.7
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 111 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 3455799999999999999999998852 45699999999999999999964 3445678999999865
No 203
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.54 E-value=2.6e-07 Score=89.63 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=57.6
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.....+|++.|..+|++||.|..|.|. +++.+|||||+|.+.++|..||.. +.-+.+.+|.|.|..+
T Consensus 109 nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 109 RVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 355679999999999999999999885 255799999999999999999965 5556789999999865
No 204
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2e-07 Score=71.40 Aligned_cols=73 Identities=26% Similarity=0.215 Sum_probs=56.3
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. .....+|+++|+++|+.|+.|.-+.-. +++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 16 ~~l~V~--nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 16 KTLFVK--GLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SSEEEE--CCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEe--CCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345553 455679999999999999755443322 356689999999999999999974 5556789999999875
No 205
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=74.03 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=56.2
Q ss_pred EEeeecCCCCCHHHHHHHhcccCC---eeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGK---VEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~---V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~~ 242 (292)
|-........|+++|+++|+.||. |..|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.+..+
T Consensus 14 l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 14 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp EEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCH
Confidence 333455667999999999999998 89998852 56799999999999999999973 3344567888887653
No 206
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.52 E-value=4.4e-07 Score=77.65 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=58.2
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|+.||.|.+|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.|..+
T Consensus 30 ~l~V--~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 30 RVYV--GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp EEEE--ECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred EEEE--ECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4554 34556799999999999999999999852 45799999999999999999974 5667789999988653
No 207
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.52 E-value=3e-07 Score=78.14 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=56.4
Q ss_pred eecCCCCCHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCC-CCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNL-SNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~-~~pl~v~~~~~ 242 (292)
......+|++.|+++|++|| .|..|.|. .+.+|+|||+|.+.++|..|+.. +.-.. +.+|.|.|..+
T Consensus 126 ~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 126 SNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 34556799999999999999 99999984 34589999999999999999985 44445 78999999865
No 208
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.52 E-value=2.3e-07 Score=69.47 Aligned_cols=65 Identities=12% Similarity=0.236 Sum_probs=55.7
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
...+..+|+++|+++|++| .|.+|.|. +.+|+|||+|.+.++|..|+.. +....+.+|.|.|...
T Consensus 11 ~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 11 KNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp ESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred eCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3455679999999999999 99999883 7799999999999999999985 4456789999999743
No 209
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.50 E-value=2.9e-07 Score=78.20 Aligned_cols=66 Identities=26% Similarity=0.257 Sum_probs=56.7
Q ss_pred ecCC-CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~-~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+. .+|++.|+++|+.||.|.+|.|.. .++|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 10 nlp~~~~~~~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 10 NLNPERVTPQSLFILFGVYGDVQRVKILF-NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCSSSCCHHHHHHHHHTTCCCSEEECST-TCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCCcccCCHHHHHHHHHhcCCEEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 3455 689999999999999999999853 4489999999999999999974 6667889999999764
No 210
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.50 E-value=1.5e-07 Score=77.30 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=57.9
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCC---eeEEEEec---CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGK---VEDVVIKS---SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQ 241 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~---V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~ 241 (292)
+|-........|+++|+++|+.||. |.+|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.+..
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 4444556677999999999999999 78888752 5679999999999999999997 4455667889988764
No 211
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.50 E-value=3.4e-07 Score=75.49 Aligned_cols=67 Identities=22% Similarity=0.461 Sum_probs=54.7
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEec---C---CCcceEEEEecCHHHHHHHHHhhcCC-----CCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKS---S---KKKGSALVVMATKSAAGAATGSVCGN-----LSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~---k~~g~A~V~F~~~~~A~~Av~~~~g~-----~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|++||+|.+|.|.. + +.+|+|||+|.+.++|..|+....|. ...|+.+.|..+
T Consensus 10 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 10 QVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 3456799999999999999999998852 2 57899999999999999999764442 267888888654
No 212
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.50 E-value=1.2e-07 Score=75.27 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=57.7
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCC---eeEEEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGK---VEDVVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~---V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
+|-........|+++|+++|+.||. |..|.|. .++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.+..+
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCH
Confidence 3444556677999999999999999 8888875 25669999999999999999997 33445678899988653
No 213
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.49 E-value=3.8e-07 Score=80.01 Aligned_cols=72 Identities=28% Similarity=0.277 Sum_probs=59.7
Q ss_pred ceEEEEeeecCC-CCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGE-DYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~-~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-| ..... .+|++.|+++|+.||.|.+|.|.. .++|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 35 ~~l~V--~nLp~~~~te~~L~~~F~~~G~i~~v~i~~-~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 35 SVLLV--SNLNPERVTPQSLFILFGVYGDVQRVKILF-NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SEEEE--ESCCTTTCCHHHHHHHHHHHTCEEEEEECC-TTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CEEEE--eCCCcccCCHHHHHHHHHhCCCeEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 34555 34555 799999999999999999999853 3489999999999999999974 5567889999999764
No 214
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.49 E-value=2.6e-07 Score=87.06 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=55.3
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCC-----CCC--CeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGN-----LSN--PLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~-----~~~--pl~v~~~~ 241 (292)
+|-|---....++|++.|+++|++||.|.+|+|. ..+|||||+|.+.++|..|+....|. .+. ||++.++.
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~--~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC--TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 4555322223569999999999999999999884 36799999999999999999875553 223 88888874
No 215
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.48 E-value=1.3e-07 Score=78.10 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.7
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
+|-|. ..+..+|++.|+++|++||.|..|.+.. +..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|.
T Consensus 96 ~l~v~--nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 96 KLFIG--GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CEEEE--CCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEE--cCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44443 3345689999999999999999998852 44589999999999999999985 44456889999885
No 216
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.48 E-value=3.6e-07 Score=81.99 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=56.8
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CC-CCCeEEEecC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NL-SNPLLVLPLQ 241 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g--~~-~~pl~v~~~~ 241 (292)
+|-|. .....+|++.|+++|++||.|..|.|.. .++|+|||+|.+.++|..|+....| +. +++|.|.|..
T Consensus 209 ~l~v~--nl~~~~~~~~l~~~F~~~G~i~~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 209 ILFLT--NLPEETNELMLSMLFNQFPGFKEVRLVP-GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEe--CCCCcCCHHHHHHHHHhcCCeEEEEEec-CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 44443 3445799999999999999999999853 3479999999999999999986444 44 7899999974
No 217
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.9e-08 Score=79.23 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=55.7
Q ss_pred cCCCCCHHHHHHHhcccCCeeE--------EEEec----CCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 177 FGEDYTAERLREIFSEFGKVED--------VVIKS----SKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~yG~V~~--------v~i~~----~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
....+|++.|+++|++||.|.. |.|.. +..+|+|||+|.+.++|..|+. +...+.+.+|.|.|..+
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 4456899999999999999998 66632 4568999999999999999997 46667789999999865
No 218
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.46 E-value=6.7e-07 Score=78.40 Aligned_cols=72 Identities=22% Similarity=0.159 Sum_probs=58.6
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccC-CeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCC-CCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFG-KVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNL-SNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG-~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~-~~pl~v~~~~~ 242 (292)
++|-|. .....+|++.|+++|+.|| .|..|.+. .+.+|+|||+|.+.++|..|+.. +.-+. +.+|.|.|..+
T Consensus 152 ~~l~V~--nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 152 ATLHLS--NIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SEEEEE--CCCTTCCHHHHHHHHHTTSCCEEEEEEC-SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CEEEEe--CCCccCCHHHHHHHHHHcCCCeeEEEEE-ECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 345443 4556799999999999999 99999984 34589999999999999999985 44445 78999999865
No 219
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.46 E-value=4.9e-07 Score=81.15 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=59.5
Q ss_pred ceEEEEeeecCCCCCHHHHH----HHhcccCCeeEEEEe-cCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 168 KVLKVSWEKFGEDYTAERLR----EIFSEFGKVEDVVIK-SSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~----~~fs~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
++|-|. .....+|++.|+ ++|+.||.|.+|.|. +++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|.
T Consensus 10 ~~l~V~--nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 10 HTIYIN--NLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 345443 345669999966 999999999999985 467899999999999999999975 44557899999997
Q ss_pred CC
Q 022762 241 QP 242 (292)
Q Consensus 241 ~~ 242 (292)
.+
T Consensus 88 ~~ 89 (282)
T 3pgw_A 88 KT 89 (282)
T ss_pred cc
Confidence 54
No 220
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.45 E-value=2.5e-07 Score=76.82 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred ecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|+.||.|..| ...+..+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..|
T Consensus 106 nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 106 NLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 445679999999999999999887 33577899999999999999999984 5556789999999865
No 221
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.44 E-value=2.9e-07 Score=73.75 Aligned_cols=74 Identities=15% Similarity=0.051 Sum_probs=56.5
Q ss_pred ceEEEEeeecCCC---CCHHHHHHHhcccCCeeEEEEecC--------CCcceEEEEecCHHHHHHHHHh--hcCCCCCC
Q 022762 168 KVLKVSWEKFGED---YTAERLREIFSEFGKVEDVVIKSS--------KKKGSALVVMATKSAAGAATGS--VCGNLSNP 234 (292)
Q Consensus 168 ~~lkvKWk~~~~~---~t~~~L~~~fs~yG~V~~v~i~~~--------k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~p 234 (292)
++|.|+--..... --+++|++.|++||.|.+|.|... ..+|+|||+|.+.++|..|+.. +.-+.+.+
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4566665543322 236889999999999999998521 2469999999999999999986 44556889
Q ss_pred eEEEecC
Q 022762 235 LLVLPLQ 241 (292)
Q Consensus 235 l~v~~~~ 241 (292)
|.|.+..
T Consensus 101 i~v~~~~ 107 (118)
T 3ue2_A 101 VVAEVYD 107 (118)
T ss_dssp CEEEEEC
T ss_pred EEEEEcC
Confidence 9998864
No 222
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.43 E-value=3.8e-07 Score=77.00 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=59.7
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
++|-|. .....+|++.|+++|++||.|..|.+.. +..+|+|||+|.+.++|..|+.. +..+.+.+|.|.|..
T Consensus 115 ~~l~v~--nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 115 HKLFIG--GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CEEEEE--CCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 345554 3445799999999999999999998852 44589999999999999999985 555678999999986
Q ss_pred C
Q 022762 242 P 242 (292)
Q Consensus 242 ~ 242 (292)
+
T Consensus 193 ~ 193 (198)
T 2yh0_A 193 V 193 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 223
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.43 E-value=3e-07 Score=79.80 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=57.9
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
+|-| ......+|++.|+++|++||+|.+|.|.. ++.+|+|||+|.+.++|..|+.. .....+.++.+.|..+
T Consensus 17 tlfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 17 SLYV--GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp EEEE--ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEE--eCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 4544 33566799999999999999999998852 56789999999999999999975 3444577888888653
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=5.2e-07 Score=71.16 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=56.6
Q ss_pred EEEEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 170 LKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 170 lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
.+|.........|+++|+++|+.| .|.+|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.+..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 355556667789999999999999 899998852 56799999999999999999953 444456788887654
No 225
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2e-07 Score=75.27 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred EEEeeecCCCCCHHHHHHHhcccCCe----eEEEEe---cCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEec
Q 022762 171 KVSWEKFGEDYTAERLREIFSEFGKV----EDVVIK---SSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPL 240 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~yG~V----~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~ 240 (292)
+|.........|+++|+++|+.||.| .+|.|. +++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|...
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 45555667789999999999999986 577774 256799999999999999999974 33334455666544
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.40 E-value=2.2e-07 Score=76.51 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=55.1
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
|-........|+++|+++|+.|| |.+|.|.. ++.+|+|||+|.+.++|..|+. +..-+.+.+|.|.+..+
T Consensus 49 lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 49 VHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp EECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 33345667799999999999999 66888752 5679999999999999999994 24445677888887654
No 227
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.37 E-value=6.1e-07 Score=80.31 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=58.5
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
++|-|. ..+..+|++.|+++|+.||.|.+|.|. +.+|+|||+|.+.++|..|+.. +.-..+.+|.|.|..+
T Consensus 23 ~~l~V~--nLp~~~te~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 23 CRLFVG--NLPTDITEEDFKRLFERYGEPSEVFIN--RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GEEEEE--SCCTTCCHHHHHHHTGGGCCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEE--CCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 455553 455679999999999999999999984 5589999999999999999974 4556778999988754
No 228
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.37 E-value=6.8e-07 Score=80.25 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=61.4
Q ss_pred ceEEEEeee---------cCCCCCHHHHHHHhcccCCeeEEEEe----cCCCcceEEEEecCHHHHHHHHHh--hcCCCC
Q 022762 168 KVLKVSWEK---------FGEDYTAERLREIFSEFGKVEDVVIK----SSKKKGSALVVMATKSAAGAATGS--VCGNLS 232 (292)
Q Consensus 168 ~~lkvKWk~---------~~~~~t~~~L~~~fs~yG~V~~v~i~----~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~ 232 (292)
+.|.|.|.. .+..+|++.|+++|+.||.|..|.+. ++..+|+|||+|.+.++|..|+.. +....+
T Consensus 85 ~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 85 RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp EECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred eEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 456777765 34568999999999999999999874 255689999999999999999964 455578
Q ss_pred CCeEEEecCC
Q 022762 233 NPLLVLPLQP 242 (292)
Q Consensus 233 ~pl~v~~~~~ 242 (292)
.+|.|.|..+
T Consensus 165 ~~i~v~~a~~ 174 (284)
T 3smz_A 165 RTLYVHWTDA 174 (284)
T ss_dssp EECEEEECCG
T ss_pred cEEEEEECCC
Confidence 8999999865
No 229
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.36 E-value=8.9e-07 Score=65.49 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=51.1
Q ss_pred ceEEEEeeecCCCCCHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcC--CCCCC
Q 022762 168 KVLKVSWEKFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCG--NLSNP 234 (292)
Q Consensus 168 ~~lkvKWk~~~~~~t~~~L~~~fs~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g--~~~~p 234 (292)
++|-|. .....+|++.|+++|+.| | .|.+|.+. +.+|+|||+|.+.++|..|+ ...| +.+.+
T Consensus 7 ~~l~V~--nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 7 RRLYVG--NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GEEEEE--SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CEEEEe--CCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec--CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 344443 345578999999999999 8 99999884 45899999999999999999 5433 45566
Q ss_pred eEEE
Q 022762 235 LLVL 238 (292)
Q Consensus 235 l~v~ 238 (292)
|.|.
T Consensus 82 l~V~ 85 (87)
T 2hzc_A 82 LKIR 85 (87)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 6654
No 230
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.34 E-value=8.1e-07 Score=80.08 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=57.7
Q ss_pred eEEEEeeecCCC-CCHHHHHHHhcccCCeeEEEEec-----CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEec
Q 022762 169 VLKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKS-----SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPL 240 (292)
Q Consensus 169 ~lkvKWk~~~~~-~t~~~L~~~fs~yG~V~~v~i~~-----~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~ 240 (292)
+|-|.- .+.. +|++.|+++|+.||.|..|.|.. +..+|+|||+|.+.++|..|+ . +.-+.+.+|.|.|.
T Consensus 212 ~l~v~n--lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 212 EIMIRN--LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp EEEEEE--ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred eEEEEC--CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 444443 3456 99999999999999999999853 456899999999999999999 5 44456899999998
Q ss_pred CC
Q 022762 241 QP 242 (292)
Q Consensus 241 ~~ 242 (292)
.+
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 231
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.34 E-value=8.5e-07 Score=71.90 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=53.6
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCee--EEEEec---CCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVE--DVVIKS---SKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~--~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
|--.......|+++|+++|+.| .|. +|.|.. ++.+|+|||+|.+.++|..|+.. ..-+.+.+|.|.+..
T Consensus 45 lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 4445667789999999999999 565 787742 56799999999999999999974 344456677776653
No 232
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.9e-07 Score=75.26 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEec----CCCcceEEEEecC----H-HH---HHHHHH----hhcCCCCCCeEEEe
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKS----SKKKGSALVVMAT----K-SA---AGAATG----SVCGNLSNPLLVLP 239 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~----~k~~g~A~V~F~~----~-~~---A~~Av~----~~~g~~~~pl~v~~ 239 (292)
+..++++.|+++|+.||+|.++.+.. +..+|+|||+|.+ . ++ |..|+. +++...+.+|.|..
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL 92 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE
Confidence 56799999999999999999999852 6779999999996 2 32 888887 56677888888885
No 233
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.33 E-value=8e-07 Score=79.81 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=55.7
Q ss_pred cCCCC-CHHHHHHHhcccCCeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecCC
Q 022762 177 FGEDY-TAERLREIFSEFGKVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQP 242 (292)
Q Consensus 177 ~~~~~-t~~~L~~~fs~yG~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~~ 242 (292)
.+..+ |++.|+++|+.||.|..|.|.. ++.+|+|||+|.+.++|..|+.. +.-+.+.+|.|.|..+
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 34454 8999999999999999998852 55699999999999999999985 5555788999999865
No 234
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.32 E-value=1.4e-06 Score=75.71 Aligned_cols=66 Identities=24% Similarity=0.183 Sum_probs=51.7
Q ss_pred eeecCCCCCHHHHHHHhcccCCe--eEEEEec--CCCcceEEEEecCHHHHHHHHHhhcCC------CCCCeEEEe
Q 022762 174 WEKFGEDYTAERLREIFSEFGKV--EDVVIKS--SKKKGSALVVMATKSAAGAATGSVCGN------LSNPLLVLP 239 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V--~~v~i~~--~k~~g~A~V~F~~~~~A~~Av~~~~g~------~~~pl~v~~ 239 (292)
.......+|++.|+++|+.||.| ..|.+.. ++++|+|||+|.+.++|..|+....|. ...|+.|.|
T Consensus 128 v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 128 FFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 34556679999999999999999 8888753 345699999999999999999864443 234676655
No 235
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.30 E-value=6e-07 Score=64.69 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=43.5
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHcc
Q 022762 7 DHYRVLGLPSGEEGAKLTEKEISKAYKWKALELHPDKRPDDPDAHDNFQKLKSSYEILK 65 (292)
Q Consensus 7 d~Y~iLgv~~~~~~~~a~~~eIkkaYrk~al~~HPDk~~~~~~a~~~f~~i~~Ay~vL~ 65 (292)
.-|.||||+++. ..++.++|+++||++...+|||+.. . .-.+..|+.|+++|.
T Consensus 5 EA~~ILgv~~~~--~~a~~~~Ik~~yr~Lm~~nhPDkGG-S---~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNIEESK--GDLNMDKINNRFNYLFEVNDKEKGG-S---FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTCCGGG--TCCSHHHHHHHHHHHHHHTCGGGTC-C---HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCc--CcCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHH
Confidence 458899998751 0169999999999999999999963 3 467889999999885
No 236
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.28 E-value=1e-06 Score=79.35 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=60.9
Q ss_pred ceEEEEeee--------cCCCCCHHHHHHHhcccC-CeeEEEEec---CCCcceEEEEecCHHHHHHHHHh--hcCCCCC
Q 022762 168 KVLKVSWEK--------FGEDYTAERLREIFSEFG-KVEDVVIKS---SKKKGSALVVMATKSAAGAATGS--VCGNLSN 233 (292)
Q Consensus 168 ~~lkvKWk~--------~~~~~t~~~L~~~fs~yG-~V~~v~i~~---~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~ 233 (292)
+.|.|.|.. .+..+|++.|+++|+.|| .|..|.|.. +..+|+|||+|.+.++|..|+.. +..+.+.
T Consensus 108 ~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 108 NEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp EECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457777765 345699999999999999 999999853 45799999999999999999984 5556779
Q ss_pred CeEEEecCCC
Q 022762 234 PLLVLPLQPA 243 (292)
Q Consensus 234 pl~v~~~~~~ 243 (292)
+|.|.|..+.
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998753
No 237
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.13 E-value=9.4e-07 Score=73.32 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=55.5
Q ss_pred eeecCCCCCHHHHHHHhcccCCeeEEEEe---cCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 174 WEKFGEDYTAERLREIFSEFGKVEDVVIK---SSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 174 Wk~~~~~~t~~~L~~~fs~yG~V~~v~i~---~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
-...+..+|++.|+++|+.||.|..+++. .++.+|+|||+|.+.++|..|+. +..-..+.+|.|.|..+
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 34456679999999999999988773332 36789999999999999999995 34556689999999864
No 238
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.08 E-value=5.7e-06 Score=68.07 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=52.5
Q ss_pred ecCCCCCHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|++| | .|.++.+ ...+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 11 nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 11 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSS
T ss_pred CCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe--cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcc
Confidence 345679999999999999 6 7777776 4568999999999999999993 24445788899988654
No 239
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.05 E-value=5.6e-06 Score=69.70 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=52.6
Q ss_pred ecCCCCCHHHHHHHhccc----C-------CeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEecCC
Q 022762 176 KFGEDYTAERLREIFSEF----G-------KVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 176 ~~~~~~t~~~L~~~fs~y----G-------~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~~~~ 242 (292)
..+..+|++.|+++|+.| | .|.++.+ .+.+|+|||+|.+.++|..|+. +..-+.+.+|.|.|..+
T Consensus 11 nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 11 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCC
Confidence 455679999999999999 5 5666665 4668999999999999999993 24445788999999764
No 240
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.81 E-value=3.9e-05 Score=66.73 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCCHHHHHHHhcccCCeeEEEEec---C-----CCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEecC
Q 022762 180 DYTAERLREIFSEFGKVEDVVIKS---S-----KKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 180 ~~t~~~L~~~fs~yG~V~~v~i~~---~-----k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~~~ 241 (292)
...++.|.+.|++||.|.+|.|.. . ..+|++||+|.+.++|..|+.. +.-+.+.+|.+.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356788999999999999999851 2 6789999999999999999986 555668899988863
No 241
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=6.3e-05 Score=57.54 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=54.1
Q ss_pred cceEEEEeeec--CCC-CCH---HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEEe
Q 022762 167 EKVLKVSWEKF--GED-YTA---ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVLP 239 (292)
Q Consensus 167 ~~~lkvKWk~~--~~~-~t~---~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~~ 239 (292)
+.+|.|.-... ... +++ ..|.+.|+.||.|..|.+.. +.+||+|.+.++|.+|+. ++....+..|+|..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----DKMWVTFLEGSSALNVLSLNGKELLNRTITIAL 82 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----SSEEEEESSHHHHHHGGGGTTCEETTEEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----CCEEEEECChHHHHHHHhcCCeEeCCeEEEEEe
Confidence 44677777652 222 442 45889999999999999854 349999999999999997 45556788899987
Q ss_pred cCC
Q 022762 240 LQP 242 (292)
Q Consensus 240 ~~~ 242 (292)
..|
T Consensus 83 kt~ 85 (91)
T 2dnr_A 83 KSP 85 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 242
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=0.00024 Score=57.14 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=44.4
Q ss_pred EEEEeeecCCC-CCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecC-HHHHHHHHHh
Q 022762 170 LKVSWEKFGED-YTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMAT-KSAAGAATGS 226 (292)
Q Consensus 170 lkvKWk~~~~~-~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~-~~~A~~Av~~ 226 (292)
+.|+-...+.. .|.+.|+++|+.||+|..|.+..+. .+|||.|.+ ..+|..|+..
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHH
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHH
Confidence 34455555555 8999999999999999999985333 379999999 7899999886
No 243
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=0.00014 Score=55.95 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=52.3
Q ss_pred cceEEEEeeecC----CCCCH---HHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH-hhcCCCCCCeEEE
Q 022762 167 EKVLKVSWEKFG----EDYTA---ERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG-SVCGNLSNPLLVL 238 (292)
Q Consensus 167 ~~~lkvKWk~~~----~~~t~---~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~-~~~g~~~~pl~v~ 238 (292)
+.+|.|.-.... .-+++ ..|.+.|+.||.|..|.+..+ .+||+|.+.++|.+|+. +.....+..|+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 456777765421 12443 447899999999999998643 39999999999999997 4556677888887
Q ss_pred ecC
Q 022762 239 PLQ 241 (292)
Q Consensus 239 ~~~ 241 (292)
+-.
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 244
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.07 E-value=0.015 Score=56.61 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=37.3
Q ss_pred eEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH
Q 022762 169 VLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG 225 (292)
Q Consensus 169 ~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~ 225 (292)
+|.|. + ....++..|.++|+.||+|.++.+- ..+.-||+|||.+.+++..++.
T Consensus 55 sv~v~--~-~~~~~~~~l~~y~~~~g~i~~~~~~-~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 55 TVLIH--C-PEKISENKFLKYLSQFGPINNHFFY-ESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEEE--E-CCC---CHHHHHHGGGSCCCCEEEE-CSSSEEEEEECC---CCHHHHS
T ss_pred eEEEE--c-CCCCCHHHHHHHHHhcCCcceEEEE-ccCCeEEEEEeCCHHHHHHHHh
Confidence 57776 3 2348899999999999999999993 4456799999999998886643
No 245
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.055 Score=42.65 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=47.9
Q ss_pred cCCCCCHHHHHHHhccc-----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh--hcCCCCCCeEEEe
Q 022762 177 FGEDYTAERLREIFSEF-----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS--VCGNLSNPLLVLP 239 (292)
Q Consensus 177 ~~~~~t~~~L~~~fs~y-----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~--~~g~~~~pl~v~~ 239 (292)
....++...++.+...| |+|..|++.+ ..|-|+|+|.+...|-+|... +..+-+..|.+..
T Consensus 29 ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 29 LSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 45569999999999999 9999999953 478899999999999888765 3333355665543
No 246
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.12 E-value=0.3 Score=37.87 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=53.6
Q ss_pred EEEeeecCCCCCHHHHHHHhcc-c----CCeeEEEEecCCCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 171 KVSWEKFGEDYTAERLREIFSE-F----GKVEDVVIKSSKKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 171 kvKWk~~~~~~t~~~L~~~fs~-y----G~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
+|.-.......+++.|.-+|.+ - |+|.+|.... +.|+|+|.+...|.+.+.. ..-+...||.|.+--
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 3333445556889999999988 2 6999998732 8999999999999999987 777888999998753
No 247
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.24 E-value=0.17 Score=38.96 Aligned_cols=55 Identities=25% Similarity=0.468 Sum_probs=41.6
Q ss_pred ccceEEEEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 022762 166 KEKVLKVSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (292)
Q Consensus 166 ~~~~lkvKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~ 227 (292)
.+..+-| .-...+--.+|.++|+.||.|.-=.| ++ .+|+|+|.+.+.|..|+...
T Consensus 15 r~HVf~l---~FP~ewKt~DI~~lFs~fggv~I~Wi-dD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV---TFPKEWKTSDLYQLFSAFGNIQISWI-DD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE---ECCTTCCHHHHHHHHTTTCSCCCEEE-ET---TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE---eCChhhhhHHHHHHhhccCCEEEEEE-cC---CeEEEEecCHHHHHHHHHhc
Confidence 4455666 33445888999999999996655555 33 38999999999999998864
No 248
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=91.42 E-value=0.45 Score=37.80 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=42.6
Q ss_pred CHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhcCCCCCCeEEEe
Q 022762 182 TAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVCGNLSNPLLVLP 239 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~g~~~~pl~v~~ 239 (292)
..+.+...|++||.|..... ......-.|.|.+..+|.+|+..+--.++.-+.|-+
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred HHHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 45668899999999999987 345679999999999999999864444443344433
No 249
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.39 E-value=0.15 Score=39.29 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 022762 178 GEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (292)
Q Consensus 178 ~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~ 227 (292)
+..+--.+|..+|+.||.|.-=.| ++ .+|+|+|.+.+.|..|+...
T Consensus 14 P~ewKt~Di~~lFs~fggv~I~Wi-dD---TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 14 PKEWKTSDLYQLFSAFGNIQISWI-DD---TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp CTTCCHHHHHHHTTTSEEEEEEEE-ET---TEEEEEEEEECHHHHHHHHH
T ss_pred ChhhhhHHHHHHHhccCCEEEEEE-cC---CeEEEEecCHHHHHHHHHhc
Confidence 344788899999999994433333 33 48999999999999998763
No 250
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=85.84 E-value=0.8 Score=36.67 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.1
Q ss_pred cCCCcceEEEEecCHHHHHHHHHh
Q 022762 203 SSKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 203 ~~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
..+.+|+|||+|.+.++|..|+..
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHh
Confidence 356799999999999999999964
No 251
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.24 E-value=2.2 Score=32.94 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=46.8
Q ss_pred HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHH--hhcCCCCCCeEEEecCC
Q 022762 183 AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATG--SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 183 ~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~--~~~g~~~~pl~v~~~~~ 242 (292)
+..++.+|..|+++...... ++-+...|.|.+.++|..|-. ++....+.+|++-+..+
T Consensus 24 k~~~e~Lf~~~~~~~tF~~l--kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 24 RAKFESLFRTYDKDTTFQYF--KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHHHTTCSSCEEEEE--TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHHhhCcCcceeec--CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35678999999999997763 455688999999999999875 46666778899888764
No 252
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=74.19 E-value=2.9 Score=33.11 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=33.1
Q ss_pred EEEecCCCcceEEEEecCHHHHHHHHH---hhcCCCCCCeEEEecCC
Q 022762 199 VVIKSSKKKGSALVVMATKSAAGAATG---SVCGNLSNPLLVLPLQP 242 (292)
Q Consensus 199 v~i~~~k~~g~A~V~F~~~~~A~~Av~---~~~g~~~~pl~v~~~~~ 242 (292)
|.+...+-+|+++|+|.+.++|..|+. ++....+ ++.+.+..+
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 444335669999999999999999985 4556666 899988654
No 253
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=69.03 E-value=3 Score=33.62 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=38.6
Q ss_pred CHHHHHHHhcccCCeeEEE-Eec-----------C------CCcceEEEEecCHHHHHHHHHh-hcCCCCCCeEEEecC
Q 022762 182 TAERLREIFSEFGKVEDVV-IKS-----------S------KKKGSALVVMATKSAAGAATGS-VCGNLSNPLLVLPLQ 241 (292)
Q Consensus 182 t~~~L~~~fs~yG~V~~v~-i~~-----------~------k~~g~A~V~F~~~~~A~~Av~~-~~g~~~~pl~v~~~~ 241 (292)
....+...|++||.|..-. +.. . ...+.-.|.|.+..+|.+|+.. +.-..++-+=|.|..
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 3455789999999998732 210 0 1245668999999999999975 333333433445543
No 254
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.16 E-value=16 Score=35.60 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=38.8
Q ss_pred EEeeecCCCCCHHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhhc
Q 022762 172 VSWEKFGEDYTAERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSVC 228 (292)
Q Consensus 172 vKWk~~~~~~t~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~~ 228 (292)
+-|. -...+...+|..+|+.||.|.-..| + ..+|+|.|.+.+.|..++..-.
T Consensus 443 l~v~-f~~~~~~~~i~~~fs~fg~v~V~wi-d---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 443 LHVT-FPKEWKTSDLYQLFSAFGNIQISWI-D---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEE-CCTTCCHHHHHHHGGGGCCCEEEEC-S---SSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEe-CCCCCCHHHHHHHHHhcCCEEEEEE-c---CCeEEEEECCHHHHHHHHHHHH
Confidence 3355 2334778999999999997644444 3 3489999999999999887654
No 255
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.83 E-value=18 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCCHHHHHHHh--cccCCeeEEEEe-cCCCcceEEEEecCHHHH-HHHH
Q 022762 180 DYTAERLREIF--SEFGKVEDVVIK-SSKKKGSALVVMATKSAA-GAAT 224 (292)
Q Consensus 180 ~~t~~~L~~~f--s~yG~V~~v~i~-~~k~~g~A~V~F~~~~~A-~~Av 224 (292)
+.+...|.+.| +.|.++....+- .....|+|+|.|.+.-+. ..|+
T Consensus 32 G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 32 GESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 57888999977 999998866653 345679999999987544 4444
No 256
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.30 E-value=1.5e+02 Score=22.41 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022762 113 PAVKARQEEEKIARQLKEEIERIRAMHE 140 (292)
Q Consensus 113 ~~~~~~~~~~~~~~~l~eE~~r~r~~~~ 140 (292)
+...+.+..+.....|+.|++++|+.-.
T Consensus 65 Pa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 65 PTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455677889999999998644
No 257
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=24.61 E-value=2.1e+02 Score=20.96 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=39.2
Q ss_pred eecCCCCCHHHHHHHhcccCCeeEEEEec------CCCcceEEEEecCHHHHHHHHHh
Q 022762 175 EKFGEDYTAERLREIFSEFGKVEDVVIKS------SKKKGSALVVMATKSAAGAATGS 226 (292)
Q Consensus 175 k~~~~~~t~~~L~~~fs~yG~V~~v~i~~------~k~~g~A~V~F~~~~~A~~Av~~ 226 (292)
.....+.|++.+.+.++.++.+.-..... ....+.|+|.|.+.+++..=...
T Consensus 7 RrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 7 RRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp EEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 34567899999999999998876655432 23578999999998877665554
No 258
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=22.56 E-value=1.4e+02 Score=27.14 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHHHHhcccCCeeEEEEecCCCcceEEEEecCHHHHHHHHHhh
Q 022762 183 AERLREIFSEFGKVEDVVIKSSKKKGSALVVMATKSAAGAATGSV 227 (292)
Q Consensus 183 ~~~L~~~fs~yG~V~~v~i~~~k~~g~A~V~F~~~~~A~~Av~~~ 227 (292)
...+.++..+||+|..+.+ + +.-+|.+.+.+.+...+...
T Consensus 35 ~~~~~~l~~kYG~i~~~~~--g---~~~~vvv~dp~~~~~il~~~ 74 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKL--G---NVESVYVIDPEDVALLFKSE 74 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEE--T---TEEEEEECCHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCceeeccC--C---CCCEEEEcCHHHHHHHHHhC
Confidence 3567889999999988877 1 34678899999998887654
Done!