Query 022764
Match_columns 292
No_of_seqs 227 out of 1630
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04372 RhoGAP_chimaerin RhoGA 100.0 3.3E-45 7.2E-50 314.6 20.9 163 52-216 1-172 (194)
2 cd04390 RhoGAP_ARHGAP22_24_25 100.0 3.7E-45 8E-50 315.6 20.9 168 50-217 1-178 (199)
3 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 7.5E-45 1.6E-49 317.5 21.1 212 49-288 2-219 (220)
4 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 2.2E-44 4.9E-49 314.3 19.5 196 51-288 1-210 (216)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 8.1E-44 1.8E-48 305.5 20.6 157 51-212 1-163 (192)
6 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 8.4E-44 1.8E-48 310.0 20.5 191 52-288 1-212 (213)
7 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.8E-43 4E-48 305.9 21.3 163 49-213 2-172 (203)
8 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.2E-43 2.6E-48 306.1 18.2 182 52-237 1-200 (200)
9 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.8E-43 3.8E-48 300.9 18.8 156 52-208 1-164 (182)
10 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.8E-43 3.9E-48 303.7 18.4 185 50-237 1-195 (195)
11 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 5E-43 1.1E-47 301.5 20.0 165 48-212 2-171 (195)
12 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 2.5E-43 5.5E-48 304.9 17.9 183 52-237 1-203 (203)
13 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 3E-43 6.6E-48 305.8 17.7 183 52-237 1-211 (211)
14 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 9.6E-43 2.1E-47 297.7 19.9 160 52-213 1-168 (187)
15 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.1E-42 2.4E-47 300.5 20.4 159 51-212 1-166 (202)
16 cd04407 RhoGAP_myosin_IXB RhoG 100.0 1.3E-42 2.8E-47 296.3 20.1 157 52-211 1-163 (186)
17 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.9E-42 4.2E-47 295.2 19.7 177 52-235 1-184 (186)
18 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.4E-42 5.1E-47 297.4 20.3 166 51-217 1-175 (196)
19 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.3E-42 5.1E-47 298.9 19.7 181 66-288 6-205 (206)
20 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 2.5E-42 5.4E-47 295.1 19.2 170 50-221 1-179 (188)
21 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 3.9E-42 8.4E-47 297.5 20.1 162 52-213 1-174 (207)
22 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.3E-42 9.3E-47 301.4 19.4 161 51-212 1-201 (225)
23 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 5.4E-42 1.2E-46 294.4 19.4 159 52-212 1-170 (192)
24 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 5.4E-42 1.2E-46 297.1 18.5 182 52-288 1-201 (208)
25 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.1E-41 4.6E-46 289.9 20.7 162 50-211 1-169 (189)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 2.3E-41 4.9E-46 288.6 19.9 160 52-214 1-167 (185)
27 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.7E-41 3.7E-46 290.7 18.6 159 51-209 1-173 (190)
28 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 3.4E-41 7.5E-46 287.7 18.2 167 52-219 1-173 (187)
29 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 4.4E-41 9.5E-46 288.9 18.1 160 52-213 1-168 (196)
30 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2E-40 4.3E-45 283.2 20.4 158 52-212 1-164 (186)
31 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 6.2E-40 1.3E-44 285.0 18.0 159 52-212 1-184 (212)
32 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 1.5E-39 3.2E-44 278.8 19.0 149 65-214 13-167 (193)
33 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.2E-39 2.6E-44 278.9 18.3 174 58-241 4-186 (200)
34 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 3.6E-39 7.9E-44 274.9 19.7 157 53-212 2-166 (184)
35 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4E-38 8.7E-43 271.6 17.3 146 68-213 27-184 (203)
36 KOG4407 Predicted Rho GTPase-a 100.0 3E-37 6.6E-42 307.0 12.0 209 48-261 1154-1373(1973)
37 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 3.6E-36 7.7E-41 263.3 17.1 169 44-214 5-199 (220)
38 smart00324 RhoGAP GTPase-activ 100.0 2.1E-34 4.6E-39 243.2 19.0 147 68-214 2-155 (174)
39 KOG2200 Tumour suppressor prot 100.0 8E-35 1.7E-39 273.6 15.2 162 47-210 296-465 (674)
40 cd00159 RhoGAP RhoGAP: GTPase- 100.0 1E-32 2.2E-37 231.0 18.6 143 70-212 1-149 (169)
41 KOG1451 Oligophrenin-1 and rel 100.0 3E-33 6.5E-38 262.4 10.2 173 71-289 390-573 (812)
42 PF00620 RhoGAP: RhoGAP domain 100.0 2E-32 4.3E-37 225.7 12.0 142 70-211 1-149 (151)
43 KOG1450 Predicted Rho GTPase-a 100.0 4.6E-32 1E-36 261.2 15.3 166 45-212 450-623 (650)
44 KOG4269 Rac GTPase-activating 100.0 8.3E-33 1.8E-37 269.0 10.1 164 45-210 893-1070(1112)
45 KOG4270 GTPase-activator prote 100.0 4.5E-31 9.7E-36 253.6 13.8 198 48-248 143-349 (577)
46 KOG2710 Rho GTPase-activating 100.0 1.2E-29 2.7E-34 235.1 15.3 164 45-208 60-254 (412)
47 KOG4406 CDC42 Rho GTPase-activ 100.0 2.6E-30 5.6E-35 235.5 10.4 171 43-213 245-422 (467)
48 KOG1117 Rho- and Arf-GTPase ac 99.9 1.1E-27 2.5E-32 232.5 12.5 172 65-248 723-902 (1186)
49 KOG1453 Chimaerin and related 99.9 3.3E-27 7.2E-32 242.1 12.6 160 51-212 602-773 (918)
50 KOG3564 GTPase-activating prot 99.9 9.8E-27 2.1E-31 214.5 13.4 171 66-239 359-535 (604)
51 KOG1452 Predicted Rho GTPase-a 99.9 2.1E-21 4.6E-26 171.6 12.5 160 49-210 182-353 (442)
52 KOG4271 Rho-GTPase activating 99.8 1.7E-20 3.6E-25 184.5 5.7 156 48-206 914-1076(1100)
53 cd04405 RhoGAP_BRCC3-like RhoG 99.8 7.8E-19 1.7E-23 151.3 14.0 182 50-288 20-233 (235)
54 KOG4724 Predicted Rho GTPase-a 99.8 6.3E-20 1.4E-24 175.4 7.8 162 47-214 78-245 (741)
55 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.8 4.4E-18 9.5E-23 145.1 13.5 143 70-212 7-168 (198)
56 KOG4370 Ral-GTPase effector RL 99.2 1.3E-11 2.8E-16 113.5 7.4 163 45-207 45-255 (514)
57 KOG3565 Cdc42-interacting prot 99.2 1.7E-11 3.6E-16 121.3 8.7 145 65-210 214-367 (640)
58 PF08101 DUF1708: Domain of un 98.9 8.9E-09 1.9E-13 97.4 12.2 145 68-212 7-170 (420)
59 KOG4724 Predicted Rho GTPase-a 98.1 2.6E-06 5.5E-11 83.0 3.5 159 48-210 413-590 (741)
60 KOG1449 Predicted Rho GTPase-a 96.5 0.00019 4.2E-09 69.3 -3.6 189 39-250 197-394 (670)
61 KOG1453 Chimaerin and related 96.4 0.0015 3.3E-08 68.4 2.0 162 51-212 462-671 (918)
62 KOG1449 Predicted Rho GTPase-a 95.9 0.0016 3.6E-08 63.0 -0.6 68 177-246 1-74 (670)
63 KOG4271 Rho-GTPase activating 95.8 0.012 2.6E-07 60.1 5.0 141 67-207 369-536 (1100)
64 KOG4370 Ral-GTPase effector RL 41.2 87 0.0019 30.2 6.4 31 119-149 118-148 (514)
65 COG4835 Uncharacterized protei 34.5 28 0.00061 26.9 1.8 45 89-135 62-106 (124)
66 PF01418 HTH_6: Helix-turn-hel 30.6 80 0.0017 22.4 3.6 40 155-200 4-43 (77)
67 PF03471 CorC_HlyC: Transporte 30.2 58 0.0013 23.2 2.9 44 88-137 5-48 (81)
68 PRK14101 bifunctional glucokin 27.8 1.3E+02 0.0028 30.6 5.8 41 153-199 342-382 (638)
69 PF12491 ApoB100_C: Apolipopro 26.9 2.1E+02 0.0045 19.4 6.1 22 164-185 29-51 (58)
70 KOG3870 Uncharacterized conser 24.9 6.3E+02 0.014 24.3 9.4 75 66-142 30-110 (434)
71 PF13606 Ank_3: Ankyrin repeat 24.7 55 0.0012 18.7 1.5 15 266-280 12-26 (30)
72 PF08281 Sigma70_r4_2: Sigma-7 22.0 1E+02 0.0022 19.8 2.7 20 156-175 2-21 (54)
73 COG2805 PilT Tfp pilus assembl 20.9 5.3E+02 0.012 24.1 7.7 124 68-210 112-275 (353)
No 1
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=3.3e-45 Score=314.59 Aligned_cols=163 Identities=23% Similarity=0.375 Sum_probs=148.1
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCC--CCCchhhhHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 128 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL 128 (292)
||+||+.+++++ +..||.++.+|++||+++|+.+|||||++|+..+++++++.+|+++. .++. ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~--~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 78 (194)
T cd04372 1 YGCDLTTLVKAH--NTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL 78 (194)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence 999999999985 55999999999999999999999999999999999999999997543 3332 225899999999
Q ss_pred HHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764 129 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 202 (292)
Q Consensus 129 K~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~ 202 (292)
|.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+|||
T Consensus 79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~ 158 (194)
T cd04372 79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFG 158 (194)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHh
Confidence 99999999999999999999886 357889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHH
Q 022764 203 PVIMWQKERKPEFY 216 (292)
Q Consensus 203 P~Ll~~~~~~~~~~ 216 (292)
|+|+++++.+....
T Consensus 159 P~Ll~~~~~~~~~~ 172 (194)
T cd04372 159 PTLMRPPEDSALTT 172 (194)
T ss_pred cccCCCCCccHHHH
Confidence 99999988765433
No 2
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=3.7e-45 Score=315.63 Aligned_cols=168 Identities=27% Similarity=0.482 Sum_probs=152.9
Q ss_pred CccCCCHHHHHhhhcC--CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764 50 DVFGVPIEVTVQRQQY--GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 127 (292)
Q Consensus 50 ~vFG~~L~~l~~~~~~--~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 127 (292)
++||+||++++.+++. ...||.++.+|++||+++|+++|||||++|+..+++++++.+|.|....+....|+|++|++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 5899999999976532 35799999999999999999999999999999999999999999877666567899999999
Q ss_pred HHHHHhhCCCCCCchhhhHHHHhHH--------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 128 AKYYLASLPEPLTTFELYDEIKGAR--------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 128 LK~fLr~Lp~PLi~~~~~~~~~~~~--------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
||.|||+||+||+|.+.|+.|+.+. .++..++.++..||+.|+.+|.||+.||++|+.|++.||||+.|||+
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT 160 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence 9999999999999999999998652 35678899999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCChHHHH
Q 022764 200 EMAPVIMWQKERKPEFYR 217 (292)
Q Consensus 200 vf~P~Ll~~~~~~~~~~~ 217 (292)
||||+|+|++..++....
T Consensus 161 vf~P~llr~~~~~~~~~~ 178 (199)
T cd04390 161 VFGPNILRPKVEDPATIM 178 (199)
T ss_pred HhccccCCCCCCCHHHHH
Confidence 999999999988765543
No 3
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.5e-45 Score=317.54 Aligned_cols=212 Identities=27% Similarity=0.385 Sum_probs=173.1
Q ss_pred CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHH
Q 022764 49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA 128 (292)
Q Consensus 49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lL 128 (292)
.++||+||+.++++. +..||.+|.+|++||+.+|+++|||||++|+..+++.|++.++.+.+....++.++|+||++|
T Consensus 2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 79 (220)
T cd04375 2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML 79 (220)
T ss_pred CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence 579999999998875 569999999999999999999999999999999999999999987655445678999999999
Q ss_pred HHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764 129 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 202 (292)
Q Consensus 129 K~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~ 202 (292)
|.|||+||+||+|.++|+.|+++ ..++++++.++..||++|+.+|++|+.||++|+.|++.|||+++|||+|||
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 159 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence 99999999999999999999876 457899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhcc
Q 022764 203 PVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAI 282 (292)
Q Consensus 203 P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~i 282 (292)
|+||+....+...... +.|.+... ..-.|.....+-....+++|.+||+||+.|
T Consensus 160 P~L~~~~~~~~~~~~~-------------------~~~~~~~~-------~~~~~~~~~l~e~~~~~~~v~~lI~~~~~l 213 (220)
T cd04375 160 PSLFHLNTSRRENSSP-------------------ARRMQRKK-------SLGKPDQKELSENKAAHQCLAYMIEECNTL 213 (220)
T ss_pred hhhcCCCCCCcccccc-------------------hhhhcccc-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987655321110 00000000 000000000111225677999999999999
Q ss_pred ccccCc
Q 022764 283 FTDANE 288 (292)
Q Consensus 283 F~~~~~ 288 (292)
|.++.|
T Consensus 214 f~vp~~ 219 (220)
T cd04375 214 FMVPKE 219 (220)
T ss_pred hcCCCC
Confidence 999876
No 4
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-44 Score=314.32 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=169.1
Q ss_pred ccCCCHHHHHhhhc---CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CCCCCCchhhhH
Q 022764 51 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA 125 (292)
Q Consensus 51 vFG~~L~~l~~~~~---~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va 125 (292)
+||+||++++++++ .+..||.++.+|+++|+++|+.+|||||++|+..+++++++.++.+... ...+..|+|++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 79999999998864 3579999999999999999999999999999999999999999976321 223568999999
Q ss_pred HHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 126 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
++||+|||+||+||+|.++|+.|.++ ..++.+++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence 99999999999999999999999876 356888999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCChHH---HHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHH
Q 022764 200 EMAPVIMWQKERKPEF---YRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLM 276 (292)
Q Consensus 200 vf~P~Ll~~~~~~~~~---~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lI 276 (292)
||||+||++...++.+ ....+... .....++++||
T Consensus 161 vfaP~l~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~iv~~lI 198 (216)
T cd04391 161 IMAPNLFPPRGKHSKDNESLQEEVNMA------------------------------------------AGCANIMRLLI 198 (216)
T ss_pred HhccccCCCCCCCCCcchhHHHHHHHH------------------------------------------HHHHHHHHHHH
Confidence 9999999998765422 22222110 02345999999
Q ss_pred hhhhccccccCc
Q 022764 277 EQHNAIFTDANE 288 (292)
Q Consensus 277 e~~~~iF~~~~~ 288 (292)
+|++.||.+++.
T Consensus 199 ~~~~~if~~p~~ 210 (216)
T cd04391 199 RYQDLLWTVPSF 210 (216)
T ss_pred HhHHHHhcCCHH
Confidence 999999999864
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.1e-44 Score=305.52 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=148.2
Q ss_pred ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHH
Q 022764 51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY 130 (292)
Q Consensus 51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 130 (292)
+||+||+.+++ +..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|...++ +++|+|++|++||+
T Consensus 1 ~FG~~L~~~~~----~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~va~~lK~ 75 (192)
T cd04402 1 LFGQPLSNICE----DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL-KAEPVLLLASVLKD 75 (192)
T ss_pred CCCCcHHHHhC----CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC-ccCCHHHHHHHHHH
Confidence 69999999987 45899999999999999999999999999999999999999999876665 67999999999999
Q ss_pred HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764 131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 204 (292)
Q Consensus 131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~ 204 (292)
|||+||+||+|.+.|+.++++ ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+
T Consensus 76 flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~ 155 (192)
T cd04402 76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS 155 (192)
T ss_pred HHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence 999999999999999999876 34788999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 022764 205 IMWQKERK 212 (292)
Q Consensus 205 Ll~~~~~~ 212 (292)
|++++..+
T Consensus 156 l~~~~~~~ 163 (192)
T cd04402 156 LLWPPASS 163 (192)
T ss_pred ccCCCCcc
Confidence 99999765
No 6
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.4e-44 Score=309.99 Aligned_cols=191 Identities=27% Similarity=0.399 Sum_probs=165.5
Q ss_pred cCCCHHHHHhhhcC---------CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCch
Q 022764 52 FGVPIEVTVQRQQY---------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNP 121 (292)
Q Consensus 52 FG~~L~~l~~~~~~---------~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~ 121 (292)
||+||+.++++++. ...||.++.+|++||+++|+.+|||||++|+..+++.+++.+|.+.... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 99999999999754 1369999999999999999999999999999999999999999876432 2345799
Q ss_pred hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccc-----cc
Q 022764 122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----LN 190 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~-----~N 190 (292)
|++|++||.|||+||+||+|.++|+.|+++ ..+...++.++..||+.|+.+|+||+.||++|+.++. .|
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N 160 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999886 3467788999999999999999999999999998764 59
Q ss_pred CCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHH
Q 022764 191 KMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIE 270 (292)
Q Consensus 191 kMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~ 270 (292)
||+++|||+||||+|++++..++...... ....+
T Consensus 161 kM~~~NLAivf~P~Ll~~~~~~~~~~~~~----------------------------------------------~~~~~ 194 (213)
T cd04397 161 KMDIHNLATVITPNILYSKTDNPNTGDEY----------------------------------------------FLAIE 194 (213)
T ss_pred cCChHHhHHhhcccccCCCCCCcchHHHH----------------------------------------------HHHHH
Confidence 99999999999999999987653211110 12345
Q ss_pred HHHHHHhhhhccccccCc
Q 022764 271 VVQCLMEQHNAIFTDANE 288 (292)
Q Consensus 271 vv~~lIe~~~~iF~~~~~ 288 (292)
+|++||+||+.||.++++
T Consensus 195 vv~~LI~n~~~if~vp~~ 212 (213)
T cd04397 195 AVNYLIENNEEFCEVPDE 212 (213)
T ss_pred HHHHHHHhHHHHhcCCCC
Confidence 999999999999999876
No 7
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-43 Score=305.90 Aligned_cols=163 Identities=29% Similarity=0.499 Sum_probs=149.6
Q ss_pred CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHH
Q 022764 49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAA 126 (292)
Q Consensus 49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~ 126 (292)
.++||+||+++++++ ++.||.++.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... .....|+|++|+
T Consensus 2 ~~~FG~~L~~~~~~~--~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence 579999999999875 5689999999999999999999999999999999999999999886432 123479999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
+||.|||+||+||+|.++|+.|+++ ..++..++.++.+||+.|+.+|+||+.||++|+.|++.|+|+++|||+|
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~ 159 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV 159 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence 9999999999999999999999886 3578899999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCh
Q 022764 201 MAPVIMWQKERKP 213 (292)
Q Consensus 201 f~P~Ll~~~~~~~ 213 (292)
|||+|+|++.++.
T Consensus 160 faP~ll~~~~~~~ 172 (203)
T cd04386 160 LAPNLLWAKNEGS 172 (203)
T ss_pred hccccCCCCCCCh
Confidence 9999999987653
No 8
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-43 Score=306.06 Aligned_cols=182 Identities=23% Similarity=0.369 Sum_probs=161.6
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||+.++++. ++.||.+|.+|++||+++|+++|||||++|+..+++++++.+++|.......+.|+|+||++||+|
T Consensus 1 FGv~l~~l~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f 78 (200)
T cd04408 1 FGVDFSQLPRDF--PEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF 78 (200)
T ss_pred CCCCHHHHHHhC--CCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence 999999999885 679999999999999999999999999999999999999999988754334568999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCC
Q 022764 132 LASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMD 193 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt 193 (292)
||+||+||+|.++|+.|+++. .++..++.++..||+.|+.+|+||+.||++|+.+++.|+|+
T Consensus 79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~ 158 (200)
T cd04408 79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMS 158 (200)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999998752 35788999999999999999999999999999999999999
Q ss_pred hhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764 194 ARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 237 (292)
Q Consensus 194 ~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~ 237 (292)
+.|||+||||+|++++..+...+.... ..++++.+||.||.+
T Consensus 159 ~~NLAivf~P~Ll~~~~~~~~~~~~~~--~~~~q~~~ve~li~~ 200 (200)
T cd04408 159 PNNLGIVFGPTLLRPLVGGDVSMICLL--DTGYQAQLVEFLISN 200 (200)
T ss_pred HhHhhhhhccccCCCCCCCchHHHHHh--ccchHHHHHHHHhhC
Confidence 999999999999999976644333222 246678899988864
No 9
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.8e-43 Score=300.90 Aligned_cols=156 Identities=28% Similarity=0.500 Sum_probs=145.8
Q ss_pred cCCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764 52 FGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 129 (292)
Q Consensus 52 FG~~L~~l~~~~~--~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 129 (292)
||+||++++++++ .+..||.++.+|++||+++|+++|||||++|+..+++++++.++++...++ +++|+|++|++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~-~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNL-EEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCc-cccChHHHHHHHH
Confidence 9999999998864 356899999999999999999999999999999999999999999887665 5689999999999
Q ss_pred HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
.|||+||+||+|.++|+.|.++ .+++..++.++.+||+.|+.+|+||+.||++|+.|++.|+||++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 9999999999999999999876 4578999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 022764 204 VIMWQ 208 (292)
Q Consensus 204 ~Ll~~ 208 (292)
+|+.+
T Consensus 160 ~l~~~ 164 (182)
T cd04381 160 TVQIS 164 (182)
T ss_pred cccCc
Confidence 99754
No 10
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-43 Score=303.71 Aligned_cols=185 Identities=23% Similarity=0.425 Sum_probs=161.0
Q ss_pred CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC---CCCchhhhHH
Q 022764 50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFDVAA 126 (292)
Q Consensus 50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~va~ 126 (292)
++||+||++++++. +..||.++..|++||+++|+ +|||||++|+..+++++++.+|+|...+.. ...|+|++|+
T Consensus 1 ~vFG~~L~~~~~~~--g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 77 (195)
T cd04384 1 RVFGCDLTEHLLNS--GQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77 (195)
T ss_pred CcCCccHHHHHHHc--CCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence 58999999999875 67999999999999999998 699999999999999999999998765442 2469999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
+||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|+||+.||++|+.+++.||||++|||+|
T Consensus 78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (195)
T cd04384 78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIV 157 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHh
Confidence 9999999999999999999999876 3578899999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCChHHHH-HHHHHhccCccccccccccC
Q 022764 201 MAPVIMWQKERKPEFYR-QYWNHASRSSSKNMEPATPH 237 (292)
Q Consensus 201 f~P~Ll~~~~~~~~~~~-~~~~~~~~~~~~i~e~li~~ 237 (292)
|||+|+++++....... .......+.|+.|+|++|.|
T Consensus 158 f~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 158 WAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 99999999865443211 11112245688899999875
No 11
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-43 Score=301.48 Aligned_cols=165 Identities=27% Similarity=0.530 Sum_probs=152.1
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 127 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 127 (292)
++.+||+||+.++++.+.+..||.+|.+|++||+++|+++|||||++|+..+++.+++.+|+|...++....|+|++|++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 46899999999998865557999999999999999999999999999999999999999999876665333499999999
Q ss_pred HHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764 128 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 202 (292)
Q Consensus 128 LK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~ 202 (292)
||+|||+||+||+|.+.|+.+.++ ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+|||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfa 161 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFG 161 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeee
Confidence 999999999999999999999875 457889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 022764 203 PVIMWQKERK 212 (292)
Q Consensus 203 P~Ll~~~~~~ 212 (292)
|+|+|+++.+
T Consensus 162 P~l~~~~~~~ 171 (195)
T cd04404 162 PNLLWAKDAS 171 (195)
T ss_pred ccccCCCCcc
Confidence 9999988664
No 12
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=2.5e-43 Score=304.89 Aligned_cols=183 Identities=22% Similarity=0.392 Sum_probs=161.7
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||+.++++. +..||.+|.+|+++|+++|+.+|||||++|+..+++++++.+++|.......++|+|++|++||+|
T Consensus 1 FG~~L~~~~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f 78 (203)
T cd04378 1 FGVDFSQVPRDF--PDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF 78 (203)
T ss_pred CCCChHHHHHHC--CCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 999999999985 569999999999999999999999999999999999999999988754444678999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhHH--------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccC
Q 022764 132 LASLPEPLTTFELYDEIKGAR--------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK 191 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~~--------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk 191 (292)
||+||+||+|.++|+.|+++. .++..++.++.+||+.|+.+|.||+.||++|++|++.|+
T Consensus 79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 158 (203)
T cd04378 79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENK 158 (203)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998752 246789999999999999999999999999999999999
Q ss_pred CChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764 192 MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 237 (292)
Q Consensus 192 Mt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~ 237 (292)
|+++|||+||||+|+|++..+.......+.+ .+++..+||.||.|
T Consensus 159 M~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~-~~~q~~~ve~li~~ 203 (203)
T cd04378 159 MSPNNLGIVFGPTLIRPRPGDADVSLSSLVD-YGYQARLVEFLITN 203 (203)
T ss_pred CCHHHhhhhhccccCCCCCCCcchhHHHHHh-hhhhHHHHHHHhhC
Confidence 9999999999999999998754322222232 36788899998864
No 13
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-43 Score=305.82 Aligned_cols=183 Identities=22% Similarity=0.403 Sum_probs=159.4
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||++++++. +..||.+|.+|+++|+++|+.+|||||++|+..+++++++.+++|.......+.|+|++|++||.|
T Consensus 1 FG~~L~~~~~~~--~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f 78 (211)
T cd04409 1 FGADFAQVAKKS--PDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY 78 (211)
T ss_pred CCCChHHHHHhC--CCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence 999999999985 568999999999999999999999999999999999999999988764434568999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhHHH----------------------------HHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 022764 132 LASLPEPLTTFELYDEIKGARS----------------------------SIHAMRNTLKKLSNVNFMTLEYVTALLLRV 183 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~~~----------------------------~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V 183 (292)
||+||+||+|.++|+.|+++.. .+..++.++.+||++|+.+|+||+.||++|
T Consensus 79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 158 (211)
T cd04409 79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158 (211)
T ss_pred HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987521 245789999999999999999999999999
Q ss_pred HhcccccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccC
Q 022764 184 SQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 237 (292)
Q Consensus 184 ~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~ 237 (292)
++|++.|+|+++|||+||||+|+|++..+.......+.+ ...+..|||.||.|
T Consensus 159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~-~~~~~~~ve~li~~ 211 (211)
T cd04409 159 SEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVD-YPHQARLVELLITY 211 (211)
T ss_pred HcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhh-hhhHHHHHHHHhhC
Confidence 999999999999999999999999987664322222222 23478899988864
No 14
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.6e-43 Score=297.67 Aligned_cols=160 Identities=24% Similarity=0.438 Sum_probs=148.7
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCC--CCCCchhhhHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL--PEGVNPFDVAALAK 129 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~--~~~~d~~~va~lLK 129 (292)
||+||+++++++ +..||.++.+|++||+++|+++|||||++|+...+++++..+|.+...++ ....|+|++|++||
T Consensus 1 FGv~L~~~~~~~--~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (187)
T cd04403 1 FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK 78 (187)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence 999999999885 56899999999999999999999999999999999999999998876543 23579999999999
Q ss_pred HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
.|||+||+||+|++.|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P 158 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGP 158 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccc
Confidence 9999999999999999999876 3578899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCh
Q 022764 204 VIMWQKERKP 213 (292)
Q Consensus 204 ~Ll~~~~~~~ 213 (292)
+|+|++..+.
T Consensus 159 ~ll~~~~~~~ 168 (187)
T cd04403 159 TLLRPEQETG 168 (187)
T ss_pred cccCCCCcch
Confidence 9999987664
No 15
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-42 Score=300.48 Aligned_cols=159 Identities=28% Similarity=0.382 Sum_probs=144.0
Q ss_pred ccCCCHHHHHhhhc-CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764 51 VFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 129 (292)
Q Consensus 51 vFG~~L~~l~~~~~-~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 129 (292)
+||+||+.++.+.. .+..||.+|.+|++||++ |+++|||||++|+..+++.+++.+|+|.... ...++|++|++||
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~~~~~~vaslLK 77 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SSALPCDVAGLLK 77 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cccCHHHHHHHHH
Confidence 79999999987532 357999999999999986 5999999999999999999999999887543 4578999999999
Q ss_pred HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
.|||+||+||+|.++|+.|+++ ..+...++.++.+||+.|+.+|+||+.||++|+.|++.||||++|||+||||
T Consensus 78 ~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 78 QFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 9999999999999999999886 2466778889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 022764 204 VIMWQKERK 212 (292)
Q Consensus 204 ~Ll~~~~~~ 212 (292)
+|++++...
T Consensus 158 ~L~~~~~~~ 166 (202)
T cd04394 158 NLFQSEEGG 166 (202)
T ss_pred eeecCCCcc
Confidence 999987643
No 16
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.3e-42 Score=296.32 Aligned_cols=157 Identities=26% Similarity=0.443 Sum_probs=145.2
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||+.++. .+..||.+|.+|++||+++|+.+|||||++|+..+++.+++.++.+......+++|+|++|++||.|
T Consensus 1 FGv~L~~~~~---~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04407 1 FGVRVGSLTS---NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW 77 (186)
T ss_pred CCCcHHHHHh---CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence 9999999975 3669999999999999999999999999999999999999999987644334678999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764 132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L 205 (292)
||+||+||+|++.|+.|+.+ .+++..++.++.+||+.|+.+|++|+.||++|+.+++.|+|+++|||+||||+|
T Consensus 78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~L 157 (186)
T cd04407 78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCL 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccc
Confidence 99999999999999999876 357889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022764 206 MWQKER 211 (292)
Q Consensus 206 l~~~~~ 211 (292)
+|+++.
T Consensus 158 l~~~~~ 163 (186)
T cd04407 158 LRCPDS 163 (186)
T ss_pred cCCCCC
Confidence 998753
No 17
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.9e-42 Score=295.18 Aligned_cols=177 Identities=27% Similarity=0.441 Sum_probs=154.8
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||+.++.. ++.||.++.+|++||+++|+.+|||||++|+..+++.+++.+|.+......+++|+|++|++||.|
T Consensus 1 FGv~L~~l~~~---~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04406 1 FGVELSRLTSE---DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW 77 (186)
T ss_pred CCCchHHHHHC---CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence 99999998754 568999999999999999999999999999999999999999987644334678999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764 132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L 205 (292)
||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|
T Consensus 78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~l 157 (186)
T cd04406 78 LRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCI 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccc
Confidence 99999999999999999876 346778899999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-ChHHHHHHHHHhccCccccccccc
Q 022764 206 MWQKER-KPEFYRQYWNHASRSSSKNMEPAT 235 (292)
Q Consensus 206 l~~~~~-~~~~~~~~~~~~~~~~~~i~e~li 235 (292)
+|+++. ++... ++++. .+..++|.+|
T Consensus 158 l~~p~~~d~~~~---~~~~~-~~~~~~~~~~ 184 (186)
T cd04406 158 LRCPDTTDPLQS---VQDIS-KTTTCVELIV 184 (186)
T ss_pred cCCCCCCCHHHH---HHHHh-hccchhhhhc
Confidence 998764 44332 23322 3677777665
No 18
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-42 Score=297.40 Aligned_cols=166 Identities=27% Similarity=0.412 Sum_probs=149.4
Q ss_pred ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CC--CCCCchhhhHHH
Q 022764 51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAAL 127 (292)
Q Consensus 51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~--~~~~d~~~va~l 127 (292)
.||+||++...+. .+..||.++.+|+++|+++|+++|||||++|+..+++++++.+|+|... +. .+..|+|++|++
T Consensus 1 ~FGvpl~~~~~~~-~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSS-ENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhccc-CCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence 5999999877643 3578999999999999999999999999999999999999999988643 22 234789999999
Q ss_pred HHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhh
Q 022764 128 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 201 (292)
Q Consensus 128 LK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf 201 (292)
||+|||+||+||+|.+.|+.++++ .+++..++.++.+||+.|+.+|.||+.||++|+.|++.|+|+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 999999999999999999999875 45788999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHH
Q 022764 202 APVIMWQKERKPEFYR 217 (292)
Q Consensus 202 ~P~Ll~~~~~~~~~~~ 217 (292)
||+|+|+++.+.....
T Consensus 160 aP~l~r~~~~~~~~~~ 175 (196)
T cd04395 160 GPTLVRTSDDNMETMV 175 (196)
T ss_pred ccccCCCCCCCHHHHH
Confidence 9999999887765443
No 19
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-42 Score=298.95 Aligned_cols=181 Identities=24% Similarity=0.386 Sum_probs=159.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764 66 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 145 (292)
Q Consensus 66 ~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~ 145 (292)
++.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....+....|+|+||++||.|||+||+||+|.++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 56999999999999999999999999999999999999999999987766667899999999999999999999999999
Q ss_pred HHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccc-----------ccCCChhhhhHhhccccccCC
Q 022764 146 DEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----------LNKMDARSLAMEMAPVIMWQK 209 (292)
Q Consensus 146 ~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~-----------~NkMt~~nLa~vf~P~Ll~~~ 209 (292)
+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+.|++ .||||++|||+||||+|+|++
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~ 165 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQ 165 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCC
Confidence 999876 3578899999999999999999999999999999986 799999999999999999998
Q ss_pred CCChHHH---HHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhcccccc
Q 022764 210 ERKPEFY---RQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDA 286 (292)
Q Consensus 210 ~~~~~~~---~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~iF~~~ 286 (292)
..+.... ...+.+ ......+|++||+||+.||.++
T Consensus 166 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 166 KSGEREFVQASLRIEE------------------------------------------STAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCcccccchhhhhHHH------------------------------------------HHHHHHHHHHHHHhHHHHcCCC
Confidence 7654211 111110 0123459999999999999998
Q ss_pred Cc
Q 022764 287 NE 288 (292)
Q Consensus 287 ~~ 288 (292)
+|
T Consensus 204 ~~ 205 (206)
T cd04376 204 PE 205 (206)
T ss_pred CC
Confidence 86
No 20
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=2.5e-42 Score=295.11 Aligned_cols=170 Identities=23% Similarity=0.383 Sum_probs=151.9
Q ss_pred CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHHH
Q 022764 50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAAL 127 (292)
Q Consensus 50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~l 127 (292)
++||++|++++++. +..||.+|.+|++||+++|+++|||||++|+..+++.+++.+|+|.+.. ..+..|+|+||++
T Consensus 1 k~FG~~L~~~~~~~--~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l 78 (188)
T cd04383 1 KLFNGSLEEYIQDS--GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78 (188)
T ss_pred CcCCccHHHHHHHC--CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 48999999999874 6699999999999999999999999999999999999999999887542 2346899999999
Q ss_pred HHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhh
Q 022764 128 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 201 (292)
Q Consensus 128 LK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf 201 (292)
||.|||+||+||+|.++|+.++++ .+++..++.++.+||+.|+.+|+||+.||++|++|++.||||++|||+||
T Consensus 79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (188)
T cd04383 79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF 158 (188)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeee
Confidence 999999999999999999999886 35788899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCC-ChHHHHHHHH
Q 022764 202 APVIMWQKER-KPEFYRQYWN 221 (292)
Q Consensus 202 ~P~Ll~~~~~-~~~~~~~~~~ 221 (292)
||+|++.++. ++...+..++
T Consensus 159 ~P~L~~~p~~~~~~~~~~~~~ 179 (188)
T cd04383 159 GPTLMPVPEGQDQVSCQAHVN 179 (188)
T ss_pred eccccCCCCCccHHHHHHHHH
Confidence 9999997653 3444444443
No 21
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-42 Score=297.50 Aligned_cols=162 Identities=27% Similarity=0.364 Sum_probs=146.8
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCC--CCCchhhhHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 128 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL 128 (292)
||+||+.++++++.+..||.+|.+|++||+++|+.+|||||++|+..+++.|++.++++.. .++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 9999999999876678999999999999999999999999999999999999999998753 2222 224899999999
Q ss_pred HHHHhhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 129 KYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 129 K~fLr~Lp~PLi~~~~~~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
|+|||+||+||+|.++|+.|+++. .....++.++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi 160 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV 160 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence 999999999999999999998762 23556888999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCh
Q 022764 200 EMAPVIMWQKERKP 213 (292)
Q Consensus 200 vf~P~Ll~~~~~~~ 213 (292)
||||+|+++++.+.
T Consensus 161 vf~P~Ll~~~~~~~ 174 (207)
T cd04379 161 CFGPVLMFCSQEFS 174 (207)
T ss_pred hhccccCCCCcccc
Confidence 99999999997763
No 22
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-42 Score=301.39 Aligned_cols=161 Identities=29% Similarity=0.496 Sum_probs=145.4
Q ss_pred ccCCCHHHHHhhhcC-------------CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC----C
Q 022764 51 VFGVPIEVTVQRQQY-------------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----A 113 (292)
Q Consensus 51 vFG~~L~~l~~~~~~-------------~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~----~ 113 (292)
|||++|++.+++.+. .+.||.+|.+|++||+++|+.+|||||++|+..+++++++.+|.+.+ .
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 799999999987642 25799999999999999999999999999999999999999998643 3
Q ss_pred CCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----------------------HHHHHHHHHHHhhhcHHHH
Q 022764 114 SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----------------------RSSIHAMRNTLKKLSNVNF 170 (292)
Q Consensus 114 ~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----------------------~~~~~~l~~ll~~LP~~n~ 170 (292)
+. .++++|++|++||+|||+||+||+|.++|+.|.++ .+++..++.++.+||+.|+
T Consensus 81 ~~-~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 81 DW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred Cc-cCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 33 56899999999999999999999999999998653 2467788999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764 171 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 212 (292)
Q Consensus 171 ~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~ 212 (292)
.+|+||+.||++|++|++.|||+++|||+||||+|+++++.+
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~ 201 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE 201 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence 999999999999999999999999999999999999987654
No 23
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-42 Score=294.37 Aligned_cols=159 Identities=28% Similarity=0.472 Sum_probs=145.8
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CCC----CCCchhhhHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP----EGVNPFDVAA 126 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~~----~~~d~~~va~ 126 (292)
||+||++++.++ +..||.++.+|+++|+++|+++|||||++|+..+++++++.+|++... +.. ...|+|++|+
T Consensus 1 FG~~L~~~~~~~--~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~ 78 (192)
T cd04398 1 FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS 78 (192)
T ss_pred CCCChHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence 999999999885 469999999999999999999999999999999999999999987632 211 2469999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
+||.|||+||+||+|.+.|+.|+++ ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|++.|||+|
T Consensus 79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv 158 (192)
T cd04398 79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158 (192)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence 9999999999999999999999876 3477889999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCC
Q 022764 201 MAPVIMWQKERK 212 (292)
Q Consensus 201 f~P~Ll~~~~~~ 212 (292)
|||+|++++..+
T Consensus 159 f~P~l~~~~~~~ 170 (192)
T cd04398 159 WGPTLMNAAPDN 170 (192)
T ss_pred HhhhhCCCCccc
Confidence 999999998764
No 24
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-42 Score=297.10 Aligned_cols=182 Identities=24% Similarity=0.355 Sum_probs=158.1
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC-CCCchhhhHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 130 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~ 130 (292)
||.+|.+- .++ .|.+|++||++ |+.+|||||++|+..+++.|++.+++|...++. .++|+|+||++||.
T Consensus 1 ~~~~~~~~--------~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~ 70 (208)
T cd04392 1 FGAPLTEE--------GIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70 (208)
T ss_pred CCCCcccc--------ccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 78888753 334 67899999998 999999999999999999999999999877654 35799999999999
Q ss_pred HHhhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCC
Q 022764 131 YLASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKM 192 (292)
Q Consensus 131 fLr~Lp~PLi~~~~~~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM 192 (292)
|||+||+||+|.++|+.|+++. .+++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|
T Consensus 71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 150 (208)
T cd04392 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM 150 (208)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999986542 3467888999999999999999999999999999999999
Q ss_pred ChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHH
Q 022764 193 DARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVV 272 (292)
Q Consensus 193 t~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv 272 (292)
|+.|||+||||+|+++++.++......... ..++|
T Consensus 151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~---------------------------------------------~~~iv 185 (208)
T cd04392 151 SADNLALLFTPHLICPRNLTPEDLHENAQK---------------------------------------------LNSIV 185 (208)
T ss_pred CHHHHHHHhCcccCCCCCCCHHHHHHHHHH---------------------------------------------HHHHH
Confidence 999999999999999988777665443322 22389
Q ss_pred HHHHhhhhccccccCc
Q 022764 273 QCLMEQHNAIFTDANE 288 (292)
Q Consensus 273 ~~lIe~~~~iF~~~~~ 288 (292)
++||+||+.||+++++
T Consensus 186 ~~lI~~~~~iF~~~~~ 201 (208)
T cd04392 186 TFMIKHSQKLFKAPAY 201 (208)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999999999864
No 25
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.1e-41 Score=289.89 Aligned_cols=162 Identities=25% Similarity=0.393 Sum_probs=150.9
Q ss_pred CccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHH
Q 022764 50 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 129 (292)
Q Consensus 50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 129 (292)
++||+||++++++...+..||.+|..|++||+++|+.+|||||++|+...++.+++.+++|...++..+.|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 58999999999876566799999999999999999999999999999999999999999998777656689999999999
Q ss_pred HHHhhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhc
Q 022764 130 YYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 202 (292)
Q Consensus 130 ~fLr~Lp~PLi~~~~~~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~ 202 (292)
+|||+||+||+|.+.|+.++++ ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+|||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~ 160 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhcc
Confidence 9999999999999999999876 236778999999999999999999999999999999999999999999999
Q ss_pred cccccCCCC
Q 022764 203 PVIMWQKER 211 (292)
Q Consensus 203 P~Ll~~~~~ 211 (292)
|+||+.+.+
T Consensus 161 P~l~~~~~~ 169 (189)
T cd04393 161 PDVFHVYTD 169 (189)
T ss_pred CceeCCCCC
Confidence 999998764
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-41 Score=288.59 Aligned_cols=160 Identities=31% Similarity=0.533 Sum_probs=148.4
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCC-CCCchhhhHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 130 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~ 130 (292)
||+||.+++.. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.+...++. .++|+|++|++||+
T Consensus 1 FG~pL~~~~~~---~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 77 (185)
T cd04373 1 FGVPLANVVTS---EKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS 77 (185)
T ss_pred CCCchHHHHhC---CCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence 99999999884 679999999999999999999999999999999999999999988766543 45799999999999
Q ss_pred HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764 131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 204 (292)
Q Consensus 131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~ 204 (292)
|||+||+||+|+++|+.+.++ ..++..++.+++.||+.|+.+|.||+.||++|+++++.|+||++|||+||||+
T Consensus 78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~ 157 (185)
T cd04373 78 FFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPT 157 (185)
T ss_pred HHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccc
Confidence 999999999999999999876 34688999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChH
Q 022764 205 IMWQKERKPE 214 (292)
Q Consensus 205 Ll~~~~~~~~ 214 (292)
|+++...+..
T Consensus 158 L~~~~~~~~~ 167 (185)
T cd04373 158 LMRPDFTSME 167 (185)
T ss_pred cCCCCCCCHH
Confidence 9998877643
No 27
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-41 Score=290.75 Aligned_cols=159 Identities=24% Similarity=0.424 Sum_probs=144.6
Q ss_pred ccCCCHHHHHhhhcC---CCCCCHHHHHHHHHHHHcC-CCCcCcccccCCHHHHHHHHHHHccCCCCCCC---CCCchhh
Q 022764 51 VFGVPIEVTVQRQQY---GKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFD 123 (292)
Q Consensus 51 vFG~~L~~l~~~~~~---~~~vP~~l~~~i~~l~~~g-l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~ 123 (292)
+||+||++++++.+. +..||.+|.+|++||+++| +.+|||||++|+...++.+++.++.+.+.+.. ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999987532 5689999999999999987 79999999999999999999999988765432 3579999
Q ss_pred hHHHHHHHHhhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764 124 VAALAKYYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 196 (292)
Q Consensus 124 va~lLK~fLr~Lp~PLi~~~~~~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n 196 (292)
+|++||.|||+||+||+|.++|+.|..+ .+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 9999999999999999999999999764 356888999999999999999999999999999999999999999
Q ss_pred hhHhhccccccCC
Q 022764 197 LAMEMAPVIMWQK 209 (292)
Q Consensus 197 La~vf~P~Ll~~~ 209 (292)
||+||||+|+++.
T Consensus 161 La~vf~P~L~~~~ 173 (190)
T cd04400 161 VCIVFSPTLNIPA 173 (190)
T ss_pred hhhhcCCCCCCCH
Confidence 9999999998763
No 28
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-41 Score=287.74 Aligned_cols=167 Identities=27% Similarity=0.360 Sum_probs=149.8
Q ss_pred cCCCHHHHHhhhcC---CCCCCHHHHHHHHHHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHH
Q 022764 52 FGVPIEVTVQRQQY---GKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 127 (292)
Q Consensus 52 FG~~L~~l~~~~~~---~~~vP~~l~~~i~~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 127 (292)
||+||++++.+++. +..||.++..|++++. .+|+.+|||||++|+..+++++++.+|++.. ......|+|++|++
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~l 79 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASL 79 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHH
Confidence 99999999977643 4689999999999986 5789999999999999999999999998753 33455799999999
Q ss_pred HHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcc--cccCCChhhhhHhhcccc
Q 022764 128 AKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKS--LLNKMDARSLAMEMAPVI 205 (292)
Q Consensus 128 LK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~--~~NkMt~~nLa~vf~P~L 205 (292)
||+|||+||+||+|.++|+.++++.+..+.+++++.+||+.|+.+|.||+.||++|+.++ +.|||+++|||+||||+|
T Consensus 80 LK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l 159 (187)
T cd04389 80 LKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNI 159 (187)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999999998766788999999999999999999999999999754 789999999999999999
Q ss_pred ccCCCCChHHHHHH
Q 022764 206 MWQKERKPEFYRQY 219 (292)
Q Consensus 206 l~~~~~~~~~~~~~ 219 (292)
++++.+++....++
T Consensus 160 ~~~~~~~~~~~~~~ 173 (187)
T cd04389 160 LRCTSDDPRVIFEN 173 (187)
T ss_pred CCCCCCCHHHHHHc
Confidence 99998887655433
No 29
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=4.4e-41 Score=288.87 Aligned_cols=160 Identities=26% Similarity=0.432 Sum_probs=147.2
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC--CCCCCchhhhHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAALAK 129 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~lLK 129 (292)
||+||..+++++ +..||.++.+|++||+++|+++|||||++|+..+++++++.+|++.... ..+..|+|+||++||
T Consensus 1 FGv~L~~~~~r~--~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (196)
T cd04387 1 FGVKISTVTKRE--RSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK 78 (196)
T ss_pred CCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 999999999985 5589999999999999999999999999999999999999999875422 235689999999999
Q ss_pred HHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 130 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 130 ~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
.|||+||+||+|+++|+.|+++ ..+.+.++.++.+||+.|+.+|.||+.||++|+.+++.|||++.|||+||||
T Consensus 79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 158 (196)
T cd04387 79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP 158 (196)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence 9999999999999999999876 3467789999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCh
Q 022764 204 VIMWQKERKP 213 (292)
Q Consensus 204 ~Ll~~~~~~~ 213 (292)
+|++++..+.
T Consensus 159 ~Llr~~~~~~ 168 (196)
T cd04387 159 TLLRPSEKES 168 (196)
T ss_pred ccCCCCcccc
Confidence 9999987654
No 30
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2e-40 Score=283.18 Aligned_cols=158 Identities=29% Similarity=0.482 Sum_probs=145.6
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHH
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 131 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 131 (292)
||+||+.++.. +..||.+|..|++||+++|+.+|||||++|+..+++.+++.+|++......+.+|+|++|++||+|
T Consensus 1 FG~~L~~~~~~---~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f 77 (186)
T cd04377 1 FGVSLSSLTSE---DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW 77 (186)
T ss_pred CCCCHHHHHhC---CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence 99999999864 568999999999999999999999999999999999999999988533234668999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764 132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L 205 (292)
||+||+||+|++.|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|+.|++.|+|+++|||+||||+|
T Consensus 78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l 157 (186)
T cd04377 78 LRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCI 157 (186)
T ss_pred HHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHh
Confidence 99999999999999999875 346889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022764 206 MWQKERK 212 (292)
Q Consensus 206 l~~~~~~ 212 (292)
+|+++..
T Consensus 158 l~~~~~~ 164 (186)
T cd04377 158 LRCPDTA 164 (186)
T ss_pred cCCCCCC
Confidence 9998654
No 31
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.2e-40 Score=285.01 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=141.9
Q ss_pred cCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC--CCCc----CcccccCCHHHHHHHHHHHccCCCCCC----CCCCch
Q 022764 52 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG--LNSQ----FLFKAEGDKKVIQHLVSMYNQDPNASL----PEGVNP 121 (292)
Q Consensus 52 FG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~g--l~~e----GIFR~~g~~~~i~~l~~~~~~~~~~~~----~~~~d~ 121 (292)
||+||+.+++++ +..||.+|.+|++||+++| +..+ ||||++|+.+.+++|++.++++...+. ..++|+
T Consensus 1 FGv~L~~~~~~~--~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 1 FGVDLETRCRLD--KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCCcHHHHHhhc--CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 999999999885 4589999999999999865 3333 999999999999999999999876643 346899
Q ss_pred hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccc
Q 022764 122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL 189 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~ 189 (292)
|++|++||.|||+||+||+|+++|+.|.++ .+++..++.++.+||+.|+.+|++|+.||++|+.++..
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~ 158 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM 158 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998653 45789999999999999999999999999999998766
Q ss_pred c---CCChhhhhHhhccccccCCCCC
Q 022764 190 N---KMDARSLAMEMAPVIMWQKERK 212 (292)
Q Consensus 190 N---kMt~~nLa~vf~P~Ll~~~~~~ 212 (292)
| +|+++|||+||||+|+|+....
T Consensus 159 ~~~~kM~~~nLa~vfgp~llr~~~~~ 184 (212)
T cd04399 159 GESEEEYADKLATSLSREILRPIIES 184 (212)
T ss_pred ccccccCHHHHHHHhhhhhcCCCccc
Confidence 5 6999999999999999987654
No 32
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=1.5e-39 Score=278.77 Aligned_cols=149 Identities=27% Similarity=0.388 Sum_probs=137.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhh
Q 022764 65 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL 144 (292)
Q Consensus 65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~ 144 (292)
.+..||.++.+|+++|+++|+.+|||||++|+..+++.+++.+++|......+..|+|++|++||+|||+||+||+|.++
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~ 92 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFAL 92 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHH
Confidence 46799999999999999999999999999999999999999999887654445679999999999999999999999999
Q ss_pred hHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764 145 YDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214 (292)
Q Consensus 145 ~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~ 214 (292)
|+.|+++ ..++..++.++..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+.++.++.
T Consensus 93 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~ 167 (193)
T cd04382 93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPD 167 (193)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCcc
Confidence 9999886 3467889999999999999999999999999999 9999999999999999999999876653
No 33
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.2e-39 Score=278.93 Aligned_cols=174 Identities=21% Similarity=0.339 Sum_probs=147.0
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCC
Q 022764 58 VTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE 137 (292)
Q Consensus 58 ~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~ 137 (292)
++.++-..++.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.++.+......+.+|+|++|++||.|||+||+
T Consensus 4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPe 82 (200)
T cd04388 4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPN 82 (200)
T ss_pred cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCC
Confidence 34444445689999999999999999999999999999876 67899999986433233568999999999999999999
Q ss_pred CCCchhhhHHHHhHH-------HHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccC
Q 022764 138 PLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 208 (292)
Q Consensus 138 PLi~~~~~~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~ 208 (292)
||||.++|+.|+++. +++..++.++. .||+.|+.||+||+.||.+|++|++.|+|+++|||+||||+|||+
T Consensus 83 PLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~ 162 (200)
T cd04388 83 PVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF 162 (200)
T ss_pred ccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCC
Confidence 999999999998862 46788889887 899999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhccCccccccccccCcccc
Q 022764 209 KERKPEFYRQYWNHASRSSSKNMEPATPHGEWD 241 (292)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~ 241 (292)
+..+..+. .++.+++|.||.+ +|.
T Consensus 163 ~~~~~~~~--------~~~~~vvE~Li~~-~~~ 186 (200)
T cd04388 163 QPASSDSP--------EFHIRIIEVLITS-EWN 186 (200)
T ss_pred Ccccccch--------hhHHHHHHHHHHH-HHh
Confidence 86543222 2345677777773 553
No 34
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-39 Score=274.85 Aligned_cols=157 Identities=27% Similarity=0.434 Sum_probs=141.5
Q ss_pred CCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CC-CCCCCchhhhHHHHHH
Q 022764 53 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-AS-LPEGVNPFDVAALAKY 130 (292)
Q Consensus 53 G~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~-~~~~~d~~~va~lLK~ 130 (292)
|.+|+.... .+..||.+|.+|++||+++|+.+|||||++|+...+++|++.++.+.. .. .++.+|+|+||++||.
T Consensus 2 ~~~l~~~~~---~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~ 78 (184)
T cd04385 2 GPALEDQQL---TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR 78 (184)
T ss_pred CccHHHhhh---CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence 667776543 367999999999999999999999999999999999999999987642 21 2456899999999999
Q ss_pred HHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccc
Q 022764 131 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 204 (292)
Q Consensus 131 fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~ 204 (292)
|||+||+||||.+.|+.|+++ ..++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+||||+
T Consensus 79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ 158 (184)
T cd04385 79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158 (184)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence 999999999999999999876 35778999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 022764 205 IMWQKERK 212 (292)
Q Consensus 205 Ll~~~~~~ 212 (292)
|+++++.+
T Consensus 159 ll~~~~~~ 166 (184)
T cd04385 159 LFQTDEHS 166 (184)
T ss_pred cCCCCccc
Confidence 99998763
No 35
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-38 Score=271.64 Aligned_cols=146 Identities=27% Similarity=0.386 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHH-HccC----CCCCCCC-CCchhhhHHHHHHHHhhCCCCCCc
Q 022764 68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM-YNQD----PNASLPE-GVNPFDVAALAKYYLASLPEPLTT 141 (292)
Q Consensus 68 ~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~-~~~~----~~~~~~~-~~d~~~va~lLK~fLr~Lp~PLi~ 141 (292)
..|.+|.+|++||+++|+++|||||++|+..+++++++. ++.+ ...++.. .+|+|+||++||+|||+||+||+|
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 455689999999999999999999999999999999875 5654 1233333 579999999999999999999999
Q ss_pred hhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCCh
Q 022764 142 FELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 213 (292)
Q Consensus 142 ~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~ 213 (292)
+++|+.|+++ ..++..++.++.+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|+|++.++.
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~ 184 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETV 184 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccH
Confidence 9999999886 45788999999999999999999999999999999999999999999999999999987654
No 36
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3e-37 Score=307.02 Aligned_cols=209 Identities=24% Similarity=0.325 Sum_probs=181.8
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC---CC--CCCCCchh
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---AS--LPEGVNPF 122 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~---~~--~~~~~d~~ 122 (292)
+.++|||+|.+... ....+.||.+|..|+..+|.+|+++.||||++||...|..|++.+++++- .+ .....|++
T Consensus 1154 ~~~~~GVrl~dCP~-~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1154 PQPVLGVRLADCPT-GSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred cCcccccccccCCc-ccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence 45699999998543 23578999999999999999999999999999999999999999998742 12 22357999
Q ss_pred hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764 123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 196 (292)
Q Consensus 123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n 196 (292)
+|.++||.|||.|||||+|..+|..|+++ -+++..++.++++||.+||.||++|+.||.+|+.|+++|||-++|
T Consensus 1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprN 1312 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRN 1312 (1973)
T ss_pred HHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999998 368999999999999999999999999999999999999999999
Q ss_pred hhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCC
Q 022764 197 LAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDG 261 (292)
Q Consensus 197 La~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~ 261 (292)
||++|||+|+|.++++...+..+|. .||+|||.||.|.||||.++.+.+..++.+-|-+..
T Consensus 1313 LAi~FGPsiVRts~Dnm~tmVthM~----dQckIVEtLI~~~dwfF~esg~te~~~~~Q~~~~~q 1373 (1973)
T KOG4407|consen 1313 LAIMFGPSIVRTSDDNMATMVTHMS----DQCKIVETLIHYNDWFFDESGTTEDAVPEQHPADGQ 1373 (1973)
T ss_pred eeEEeccceeccCCccHHHHhhcch----hhhhHHHHHHhhhhheeccCCCccccccccCccccC
Confidence 9999999999999998766655444 499999999999999999876666555555444433
No 37
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=3.6e-36 Score=263.26 Aligned_cols=169 Identities=21% Similarity=0.333 Sum_probs=152.8
Q ss_pred cCCCCCCccCCCHHHHHhhhc--------------------CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHH----
Q 022764 44 KGVASTDVFGVPIEVTVQRQQ--------------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKV---- 99 (292)
Q Consensus 44 ~~~~~~~vFG~~L~~l~~~~~--------------------~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~---- 99 (292)
++...+++||.+|+++.+... ....||.+|.+|++||+++|+.+|||||++|+...
T Consensus 5 ~~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~ 84 (220)
T cd04380 5 TGVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGEL 84 (220)
T ss_pred eeeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHH
Confidence 345578999999999986321 24589999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-HHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 022764 100 IQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLK-KLSNVNFMTLEYVT 177 (292)
Q Consensus 100 i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-~~~~~~l~~ll~-~LP~~n~~~L~~L~ 177 (292)
++++++.+|+|.... ...|+|++|++||.|||+||+||+|+++|+.++++ ....+.++.++. .||+.|+.+|.||+
T Consensus 85 i~~l~~~ld~~~~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 85 LAEIRDALDTGSPFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999999999987654 56899999999999999999999999999999987 355667889999 99999999999999
Q ss_pred HHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764 178 ALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214 (292)
Q Consensus 178 ~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~ 214 (292)
.||++|+.+++.|+|+++|||+||||+|+|++..++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~ 199 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG 199 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence 9999999999999999999999999999999987764
No 38
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=2.1e-34 Score=243.15 Aligned_cols=147 Identities=33% Similarity=0.573 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCchhhhHHHHHHHHhhCCCCCCchhhhH
Q 022764 68 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYD 146 (292)
Q Consensus 68 ~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~ 146 (292)
.||.++..|++||+++|+++|||||++|+..+++++++.++++...+ ....+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 69999999999999999999999999999999999999999987665 35679999999999999999999999999999
Q ss_pred HHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChH
Q 022764 147 EIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 214 (292)
Q Consensus 147 ~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~ 214 (292)
.++++. .++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~ 155 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVA 155 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHH
Confidence 998763 46889999999999999999999999999999999999999999999999999999987754
No 39
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=8e-35 Score=273.61 Aligned_cols=162 Identities=27% Similarity=0.388 Sum_probs=150.5
Q ss_pred CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CCCCCCchhhh
Q 022764 47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDV 124 (292)
Q Consensus 47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~v 124 (292)
+..++||+||..++++ +|..+|.+|.+++.||+++|++++||||++|.+++|+.|++.++...+. ..++....|+|
T Consensus 296 kd~~vFGVPL~vll~r--tG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~Dv 373 (674)
T KOG2200|consen 296 KDGGVFGVPLTVLLQR--TGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDV 373 (674)
T ss_pred CCCceeecCceeeecc--CCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHH
Confidence 4789999999999987 4679999999999999999999999999999999999999999876544 34567889999
Q ss_pred HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764 125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 198 (292)
Q Consensus 125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa 198 (292)
|.+||+|||+||+||+|.++.+.|..+ ..++.+++.++-.||++||++|+.|+.||++|+.+++.|+||+.|||
T Consensus 374 AdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nls 453 (674)
T KOG2200|consen 374 ADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLS 453 (674)
T ss_pred HHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhh
Confidence 999999999999999999999999988 46899999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCC
Q 022764 199 MEMAPVIMWQKE 210 (292)
Q Consensus 199 ~vf~P~Ll~~~~ 210 (292)
+||||+||....
T Consensus 454 vcmAPsLF~l~~ 465 (674)
T KOG2200|consen 454 VCMAPSLFHLNA 465 (674)
T ss_pred hhhcchHHhhcc
Confidence 999999998654
No 40
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=1e-32 Score=231.01 Aligned_cols=143 Identities=37% Similarity=0.585 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHH
Q 022764 70 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK 149 (292)
Q Consensus 70 P~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~ 149 (292)
|.+|..|++||+++|+.++||||++|+..+++.+++.++.+.........|+|++|+++|.|||+||+||+|.+.|+.++
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999998776445678999999999999999999999999999999
Q ss_pred hHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764 150 GAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 212 (292)
Q Consensus 150 ~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~ 212 (292)
.+. .++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 874 478999999999999999999999999999999999999999999999999999999776
No 41
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3e-33 Score=262.36 Aligned_cols=173 Identities=27% Similarity=0.383 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-----CCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764 71 HILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 145 (292)
Q Consensus 71 ~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-----~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~ 145 (292)
.++.+||+.|+..|++++|+||..|...+|++|...+-... +.+..+.+|.-++++.||.|||.||+||.+++++
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 47999999999999999999999999999999887653221 1223356889999999999999999999999999
Q ss_pred HHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHHHH
Q 022764 146 DEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQY 219 (292)
Q Consensus 146 ~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~ 219 (292)
..|+.+. -|+.+++.++.+||..||..|..|++||..|+.|+.+|.||..||++||||+|+|++.++-
T Consensus 470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETV------ 543 (812)
T KOG1451|consen 470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETV------ 543 (812)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHH------
Confidence 9999873 4899999999999999999999999999999999999999999999999999999986652
Q ss_pred HHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHHHhhhhccccccCcc
Q 022764 220 WNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANET 289 (292)
Q Consensus 220 ~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~lIe~~~~iF~~~~~~ 289 (292)
+++|++.|+|| ||+.|||||+.||...+|.
T Consensus 544 ---------------------------------------AAiMdIKFQNI-VVEILIEnyeKIF~t~Pd~ 573 (812)
T KOG1451|consen 544 ---------------------------------------AAIMDIKFQNI-VVEILIENYEKIFKTKPDS 573 (812)
T ss_pred ---------------------------------------HHHHcchhhhh-hHHHHHhhhHHHhcCCCCc
Confidence 35678999999 9999999999999999885
No 42
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.98 E-value=2e-32 Score=225.70 Aligned_cols=142 Identities=36% Similarity=0.540 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHH
Q 022764 70 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI 148 (292)
Q Consensus 70 P~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~ 148 (292)
|.+|..|++||+++|+.++||||++|+..+++++++.++.+.... ..+.+|+|++|++||+||++||+||+|.++|+.+
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 889999999999999999999999999999999999999988664 4577999999999999999999999999999999
Q ss_pred HhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCC
Q 022764 149 KGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKER 211 (292)
Q Consensus 149 ~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~ 211 (292)
+++ ..+++.++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 964 567899999999999999999999999999999999999999999999999999998864
No 43
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.98 E-value=4.6e-32 Score=261.17 Aligned_cols=166 Identities=24% Similarity=0.407 Sum_probs=152.5
Q ss_pred CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCC--Cchh
Q 022764 45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG--VNPF 122 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~--~d~~ 122 (292)
..+...+||++|+.+|+++ +..||.+|..|++.|+..|++.+||||++|+...|++|+..+|.+...++... .|+|
T Consensus 450 ~~k~~~vFGs~Lealc~rE--~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dih 527 (650)
T KOG1450|consen 450 KPKFDKVFGSPLEALCQRE--NGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIH 527 (650)
T ss_pred ccccCcccCccHHHHhhcc--CCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHH
Confidence 3345899999999999996 56999999999999999999999999999999999999999997766665444 7999
Q ss_pred hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764 123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 196 (292)
Q Consensus 123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n 196 (292)
+|+++||.|||+||+||+|..+...|..+ ..+...+++++..||..|+.||+||+.||++|..|++.|+|+.+|
T Consensus 528 ai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~N 607 (650)
T KOG1450|consen 528 AITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHN 607 (650)
T ss_pred HHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999887 347889999999999999999999999999999999999999999
Q ss_pred hhHhhccccccCCCCC
Q 022764 197 LAMEMAPVIMWQKERK 212 (292)
Q Consensus 197 La~vf~P~Ll~~~~~~ 212 (292)
||+||||+|+.+-..+
T Consensus 608 LaIVfgpTl~~~~~~~ 623 (650)
T KOG1450|consen 608 LAIVFGPTLIKPEQET 623 (650)
T ss_pred eEEEeccccccccccc
Confidence 9999999999976554
No 44
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.98 E-value=8.3e-33 Score=268.98 Aligned_cols=164 Identities=26% Similarity=0.496 Sum_probs=144.8
Q ss_pred CCCCCCccCCCHHHHH----hhhcCCCCCCHHHHHHHHHHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCC---C
Q 022764 45 GVASTDVFGVPIEVTV----QRQQYGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---P 116 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~----~~~~~~~~vP~~l~~~i~~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~---~ 116 (292)
...+.+|||.|+..-+ +++ ...+|++|++|++||+ .+|++.|||||++|+...|+.|++.||.+.+.++ .
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n--~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d 970 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRN--VSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMD 970 (1112)
T ss_pred cceeceeccccceeeEeeeeeec--ccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcc
Confidence 3457899997665433 333 4599999999999999 7999999999999999999999999998854443 2
Q ss_pred CCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhccccc
Q 022764 117 EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLN 190 (292)
Q Consensus 117 ~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~N 190 (292)
+..|+|+|||+||+|||+||+||++.++|..|... ......+..+|.+||++|..++.+|+.||+||+.++..|
T Consensus 971 ~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvN 1050 (1112)
T KOG4269|consen 971 SEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVN 1050 (1112)
T ss_pred ccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccc
Confidence 46899999999999999999999999999999765 346778899999999999999999999999999999999
Q ss_pred CCChhhhhHhhccccccCCC
Q 022764 191 KMDARSLAMEMAPVIMWQKE 210 (292)
Q Consensus 191 kMt~~nLa~vf~P~Ll~~~~ 210 (292)
||+++||++||||+|.++.+
T Consensus 1051 KMnlrNlciVFsPTLniPse 1070 (1112)
T KOG4269|consen 1051 KMNLRNLCIVFSPTLNIPSE 1070 (1112)
T ss_pred cccccceeeeecccccCcHH
Confidence 99999999999999999864
No 45
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-31 Score=253.60 Aligned_cols=198 Identities=28% Similarity=0.395 Sum_probs=168.4
Q ss_pred CCCccCCCHHHHHhhh-cCCCCCCHHHHHHHH-HHH-HcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764 48 STDVFGVPIEVTVQRQ-QYGKPVPHILVKCAD-YLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 124 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~-~~~~~vP~~l~~~i~-~l~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 124 (292)
...+||+++...-... ..+..||.++.-..+ .+. +.|+..|||||++|....++.+|+.+|.|...... ..|+|++
T Consensus 143 ~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~~ 221 (577)
T KOG4270|consen 143 SETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHCL 221 (577)
T ss_pred hhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHHH
Confidence 5779999888764322 224457999988887 655 68899999999999999999999999988765544 6899999
Q ss_pred HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764 125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 198 (292)
Q Consensus 125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa 198 (292)
|++||.|||+||+|++++++|+.|+.+ +++.+.++.++..||+.|+..|.|+++||+.|+++++.||||++|||
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlA 301 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLA 301 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhce
Confidence 999999999999999999999998865 45788999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccc
Q 022764 199 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESE 248 (292)
Q Consensus 199 ~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~ 248 (292)
+||||+|++.++ +....++...+++....+++..|.+.+|+|.++..-
T Consensus 302 iV~gPNl~~~~~--p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 302 IVFGPNLLWMKD--PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELEF 349 (577)
T ss_pred eEecCCccccCC--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 999999999997 333344444455666778999999999999966443
No 46
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.96 E-value=1.2e-29 Score=235.12 Aligned_cols=164 Identities=28% Similarity=0.453 Sum_probs=146.1
Q ss_pred CCCCCCccCCCHHHHHhhhc-------C---CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC---
Q 022764 45 GVASTDVFGVPIEVTVQRQQ-------Y---GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP--- 111 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~-------~---~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~--- 111 (292)
......+||+++.+...... . -..||.++.+|+.|++++|+.+.||||++|+..++++|++.++.++
T Consensus 60 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~ 139 (412)
T KOG2710|consen 60 RVLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYG 139 (412)
T ss_pred cccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccc
Confidence 34456677777766643221 1 2589999999999999999999999999999999999999999984
Q ss_pred -CCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----H-HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 022764 112 -NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----R-SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS 184 (292)
Q Consensus 112 -~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~-~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~ 184 (292)
+...++++++|++|++||+|||+||+||||.++|+.|+.. . +++..++.++..||+.|+.+|.+++.||+.++
T Consensus 140 ~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a 219 (412)
T KOG2710|consen 140 IDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVA 219 (412)
T ss_pred ccccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhh
Confidence 5556788999999999999999999999999999999876 3 78999999999999999999999999999999
Q ss_pred hccccc-----------CCChhhhhHhhccccccC
Q 022764 185 QKSLLN-----------KMDARSLAMEMAPVIMWQ 208 (292)
Q Consensus 185 ~~~~~N-----------kMt~~nLa~vf~P~Ll~~ 208 (292)
.|+..| +|+++|||+||+|+++..
T Consensus 220 ~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k 254 (412)
T KOG2710|consen 220 SHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK 254 (412)
T ss_pred cccccccccccccccCcccchhhhhhhhcchhhhc
Confidence 999888 999999999999999995
No 47
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.96 E-value=2.6e-30 Score=235.47 Aligned_cols=171 Identities=28% Similarity=0.519 Sum_probs=155.8
Q ss_pred hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC-CCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCch
Q 022764 43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 121 (292)
Q Consensus 43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~g-l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~ 121 (292)
.+....+..||++|+-+.+....+..+|.++..|+++|..+| +.+||+||.+++.+.+.++...+++|..+++..-.|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 334456779999999998877678899999999999999999 9999999999999999999999999999987544569
Q ss_pred hhhHHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764 122 FDVAALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 195 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~-LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~ 195 (292)
|..|.++|.|||+||+||++.++|..+.+. ..+...+.++++. ||++|+.++++++.||.+|++|+..|+||+.
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~s 404 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTAS 404 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccc
Confidence 999999999999999999999999998665 4577888999987 9999999999999999999999999999999
Q ss_pred hhhHhhccccccCCCCCh
Q 022764 196 SLAMEMAPVIMWQKERKP 213 (292)
Q Consensus 196 nLa~vf~P~Ll~~~~~~~ 213 (292)
|||.||||+++++.+.+.
T Consensus 405 NLa~vfGpnl~w~~~~s~ 422 (467)
T KOG4406|consen 405 NLAVVFGPNLLWAQDESL 422 (467)
T ss_pred cceeeecccccccccccc
Confidence 999999999999986653
No 48
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.1e-27 Score=232.48 Aligned_cols=172 Identities=25% Similarity=0.336 Sum_probs=148.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC-CCC-CCCchhhhHHHHHHHHhhCCCCCCch
Q 022764 65 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP-EGVNPFDVAALAKYYLASLPEPLTTF 142 (292)
Q Consensus 65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~~-~~~d~~~va~lLK~fLr~Lp~PLi~~ 142 (292)
.+..||.++..||.|+.++|+..|||||++|...++.+|.+.|.++... .+. .+..+.+|+++||+|||+|++||+|.
T Consensus 723 s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~ 802 (1186)
T KOG1117|consen 723 SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK 802 (1186)
T ss_pred cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence 4679999999999999999999999999999999999999999877653 222 24679999999999999999999999
Q ss_pred hhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHH
Q 022764 143 ELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFY 216 (292)
Q Consensus 143 ~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~ 216 (292)
++|..|+++ .+++....++|..||..||.||+.|+.||++|..+++.|+|+++|||.||||+||.....+.
T Consensus 803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqde--- 879 (1186)
T KOG1117|consen 803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDE--- 879 (1186)
T ss_pred hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCch---
Confidence 999999987 46899999999999999999999999999999999999999999999999999998875552
Q ss_pred HHHHHHhccCccccccccccCccccccccccc
Q 022764 217 RQYWNHASRSSSKNMEPATPHGEWDMLADESE 248 (292)
Q Consensus 217 ~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~ 248 (292)
++..|++.||+++...|..++++
T Consensus 880 ---------hevnVledLingYvvVF~v~eee 902 (1186)
T KOG1117|consen 880 ---------HEVNVLEDLINGYVVVFEVDEEE 902 (1186)
T ss_pred ---------hhhhHHHHHhcCceEEEEecHHH
Confidence 12335555555555555555443
No 49
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=3.3e-27 Score=242.15 Aligned_cols=160 Identities=25% Similarity=0.462 Sum_probs=149.8
Q ss_pred ccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHH
Q 022764 51 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY 130 (292)
Q Consensus 51 vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 130 (292)
.||..|.+++.++ +..||.++..|+.+|+.+|+.+|||||++|...+++.|...++.+.......+.|+|++++++|+
T Consensus 602 ~fG~~l~~~~~~e--~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~ 679 (918)
T KOG1453|consen 602 LFGVSLSELARYE--PSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKL 679 (918)
T ss_pred cccHHHHHhhccC--CCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHH
Confidence 9999999998875 56999999999999999999999999999999999999999998875556678999999999999
Q ss_pred HHhhCCCCCCchhhhHHHHhHH------------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764 131 YLASLPEPLTTFELYDEIKGAR------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 198 (292)
Q Consensus 131 fLr~Lp~PLi~~~~~~~~~~~~------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa 198 (292)
|||+||+||+++..|+.|+++. ..+..+..++..||+.|+.+|.+|+.||.+|+.+++.|+|++.|||
T Consensus 680 yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nla 759 (918)
T KOG1453|consen 680 YLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLA 759 (918)
T ss_pred HHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCcc
Confidence 9999999999999999998872 2678899999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCC
Q 022764 199 MEMAPVIMWQKERK 212 (292)
Q Consensus 199 ~vf~P~Ll~~~~~~ 212 (292)
+||||||+|+++..
T Consensus 760 ivF~Ptllr~~d~~ 773 (918)
T KOG1453|consen 760 IVFAPTLLRPPDGT 773 (918)
T ss_pred ccccCcccCCCCCc
Confidence 99999999999765
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.94 E-value=9.8e-27 Score=214.45 Aligned_cols=171 Identities=20% Similarity=0.303 Sum_probs=147.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhh
Q 022764 66 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 145 (292)
Q Consensus 66 ~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~ 145 (292)
..-||.+|..|+..||.+|+.++||||++|....+++|+..+-++.........|+|++|+++|.|||+|.+||||....
T Consensus 359 aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~ 438 (604)
T KOG3564|consen 359 APMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR 438 (604)
T ss_pred cccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence 35899999999999999999999999999999999999999998887665567899999999999999999999999999
Q ss_pred HHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHHHH
Q 022764 146 DEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQY 219 (292)
Q Consensus 146 ~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~ 219 (292)
..|..+ ...+.++...+..||..||.||.|||-|+.+||+ ++.|+|+..|||.+|||+++..+.+++....+
T Consensus 439 rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~- 516 (604)
T KOG3564|consen 439 RDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTM- 516 (604)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHH-
Confidence 999887 3467888999999999999999999999999999 88999999999999999999977665543322
Q ss_pred HHHhccCccccccccccCcc
Q 022764 220 WNHASRSSSKNMEPATPHGE 239 (292)
Q Consensus 220 ~~~~~~~~~~i~e~li~~~~ 239 (292)
..++ ..+.++++.|..-..
T Consensus 517 l~dv-~~q~rvmkaLlelp~ 535 (604)
T KOG3564|consen 517 LQDV-KTQPRVMKALLELPL 535 (604)
T ss_pred HHhh-hhhHHHHHHHHhCCH
Confidence 2222 225567777665444
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-21 Score=171.64 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=141.8
Q ss_pred CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCC-CC--CCCchhhhH
Q 022764 49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LP--EGVNPFDVA 125 (292)
Q Consensus 49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~--~~~d~~~va 125 (292)
.++||.+|+.+++++ ...-|.++.+|++.||++|++.-|+|+++|+..+-+.|+..|+.+.... +. .--|.++++
T Consensus 182 rgvfG~~L~~lV~RE--~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvIt 259 (442)
T KOG1452|consen 182 RGVFGISLSRLVQRE--PESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVIT 259 (442)
T ss_pred ccccchhhHhHhhcC--CCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceee
Confidence 459999999999986 4588999999999999999999999999999999999999998765432 21 135788899
Q ss_pred HHHHHHHhhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764 126 ALAKYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 196 (292)
Q Consensus 126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n 196 (292)
+++|.|||||||||++...++...++. .....+-.++..|+.+++.+|-.++.||..|..+++.|+||+..
T Consensus 260 g~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~ 339 (442)
T KOG1452|consen 260 GDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTR 339 (442)
T ss_pred cccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHH
Confidence 999999999999999999888877762 35677888999999999999999999999999999999999999
Q ss_pred hhHhhccccccCCC
Q 022764 197 LAMEMAPVIMWQKE 210 (292)
Q Consensus 197 La~vf~P~Ll~~~~ 210 (292)
||.+|||-||-+.+
T Consensus 340 Ls~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 340 LSLIFAPLLFFCLD 353 (442)
T ss_pred HHHHhhhhHHHhhc
Confidence 99999999987654
No 52
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-20 Score=184.50 Aligned_cols=156 Identities=28% Similarity=0.446 Sum_probs=141.6
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchhhhHH
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAA 126 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~va~ 126 (292)
....||.+|...... ...+|.++.+|++||+..|+.+||+||++|+......+++.|.++...++.+ +..+|++|+
T Consensus 914 ~s~~~~~~l~~~~t~---~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vag 990 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTS---EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAG 990 (1100)
T ss_pred hhhccCCcccccccC---CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccC
Confidence 467899999988765 5689999999999999999999999999999999999999999877776543 467999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
.+|.|+.+||+||+|+++...+.++ ..++..++..+..||+.|+.+++|++.||.+|+.....|.||.+||++|
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 9999999999999999988877766 3467778999999999999999999999999999999999999999999
Q ss_pred hccccc
Q 022764 201 MAPVIM 206 (292)
Q Consensus 201 f~P~Ll 206 (292)
|+|.|+
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 998887
No 53
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.80 E-value=7.8e-19 Score=151.31 Aligned_cols=182 Identities=19% Similarity=0.234 Sum_probs=144.0
Q ss_pred CccCCCHHHHHhhhcCCCCCCHHHHHHH--HHHHHcCCCC--cCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchh--
Q 022764 50 DVFGVPIEVTVQRQQYGKPVPHILVKCA--DYLVLSGLNS--QFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPF-- 122 (292)
Q Consensus 50 ~vFG~~L~~l~~~~~~~~~vP~~l~~~i--~~l~~~gl~~--eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~-- 122 (292)
.+||.|+-+-+.+ .+...|..+..-. +++..+.++. -|+||+++....+...++.++..++....+ +...+
T Consensus 20 ~l~glp~Ld~vl~--~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~ 97 (235)
T cd04405 20 QLVGLPLLEELLD--PALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ 97 (235)
T ss_pred HHcCCccHHHHhc--ccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence 4899987766655 3557777776555 5555555544 699999999999999999998776541111 11112
Q ss_pred ---------hhHHHHHHHHhhCCCCCCchhhhHHHHhH---------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 022764 123 ---------DVAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS 184 (292)
Q Consensus 123 ---------~va~lLK~fLr~Lp~PLi~~~~~~~~~~~---------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~ 184 (292)
+||.++++||++|||||+|..+|+.+..+ +.++++++.++..||++||..|+.|+.||++++
T Consensus 98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va 177 (235)
T cd04405 98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAA 177 (235)
T ss_pred cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999988766 347899999999999999999999999999999
Q ss_pred hcc-------cccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCC
Q 022764 185 QKS-------LLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIP 257 (292)
Q Consensus 185 ~~~-------~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p 257 (292)
.+. ..|+| +++..|+|+++++++-+..
T Consensus 178 ~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~~------------------------------------------- 211 (235)
T cd04405 178 KNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDEG------------------------------------------- 211 (235)
T ss_pred hcCccccccccchHH---HHHHHhhhHhcCccccCHH-------------------------------------------
Confidence 984 26676 8999999999999954411
Q ss_pred CCCCCCCCCchHHHHHHHHhhhhccccccCc
Q 022764 258 LDDGMPIDFGAIEVVQCLMEQHNAIFTDANE 288 (292)
Q Consensus 258 ~~~~~~~~~~~~~vv~~lIe~~~~iF~~~~~ 288 (292)
+...+|.+||+|+.+||.++..
T Consensus 212 ---------~~~~LV~Fmmd~~~~ifkvP~~ 233 (235)
T cd04405 212 ---------LADLLVLFLMDHHQDIFKVPGS 233 (235)
T ss_pred ---------HHHHHHHHHHHcchhhhcCCcc
Confidence 2233899999999999999764
No 54
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.80 E-value=6.3e-20 Score=175.38 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=148.9
Q ss_pred CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764 47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 126 (292)
Q Consensus 47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 126 (292)
.+..+||.||..+|... ..|.-+.++.-++-..|..++||||..++...++.+++.++.|.++.+ +...+++.|.
T Consensus 78 ~~~~Lfg~pl~nic~~~----~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l-~~~~i~v~a~ 152 (741)
T KOG4724|consen 78 ADSFLFGWPLTNICVHF----RLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGL-KSGEIVVDAA 152 (741)
T ss_pred CCccccCccchhhcccC----CCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccc-cccceEEeeh
Confidence 46789999999998752 499999999999999999999999999999999999999999988875 4578999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
++|.|||.+|.-++..++|+.|... .+++++++.+..+||..|..+|.+|...| .+..++..|.|+.-|||+|
T Consensus 153 v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~c 231 (741)
T KOG4724|consen 153 VDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQC 231 (741)
T ss_pred hhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHH
Confidence 9999999999999999999999765 56899999999999999999999999999 8999999999999999999
Q ss_pred hccccccCCCCChH
Q 022764 201 MAPVIMWQKERKPE 214 (292)
Q Consensus 201 f~P~Ll~~~~~~~~ 214 (292)
++|++++....+..
T Consensus 232 v~p~~l~~~~~~s~ 245 (741)
T KOG4724|consen 232 VNPIKLKVLTRTSS 245 (741)
T ss_pred hcchhcccccccCh
Confidence 99999998866644
No 55
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.77 E-value=4.4e-18 Score=145.14 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCc---ccccCCHHHHHHH-HHHHccCCCCCC--------CCCCchhhhHHHHHHHHhhCCC
Q 022764 70 PHILVKCADYLVLSGLNSQFL---FKAEGDKKVIQHL-VSMYNQDPNASL--------PEGVNPFDVAALAKYYLASLPE 137 (292)
Q Consensus 70 P~~l~~~i~~l~~~gl~~eGI---FR~~g~~~~i~~l-~~~~~~~~~~~~--------~~~~d~~~va~lLK~fLr~Lp~ 137 (292)
-.++..|.+.|+.+|+++++| ||.+++...++.+ +..++.+..... ....|+|+++++||.|++.||+
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 456889999999999999999 9999999999997 566665532211 1247999999999999999999
Q ss_pred CCCch-hhhHHHHhHHH----HHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCC
Q 022764 138 PLTTF-ELYDEIKGARS----SIHAMRNTLKKL--SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210 (292)
Q Consensus 138 PLi~~-~~~~~~~~~~~----~~~~l~~ll~~L--P~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~ 210 (292)
++++. +.|..|...+. ...+++.++..+ |+.|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..+.
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~ 166 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT 166 (198)
T ss_pred CccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence 99999 99999998643 256888999888 899999999999999999999999999999999999999999876
Q ss_pred CC
Q 022764 211 RK 212 (292)
Q Consensus 211 ~~ 212 (292)
..
T Consensus 167 ~~ 168 (198)
T cd04401 167 GA 168 (198)
T ss_pred cc
Confidence 53
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.25 E-value=1.3e-11 Score=113.50 Aligned_cols=163 Identities=21% Similarity=0.316 Sum_probs=132.4
Q ss_pred CCCCCCccCCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC----------
Q 022764 45 GVASTDVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---------- 112 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~--~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~---------- 112 (292)
|...+++-|.++...+..++ .+...|.++...+.+.+.+|.-++|++|.+..+++.+.++..-..+..
T Consensus 45 g~~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~ 124 (514)
T KOG4370|consen 45 GVAIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAA 124 (514)
T ss_pred CCcCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHH
Confidence 45566777777776654443 366788899999999999999999999999988776666554332110
Q ss_pred ------------------------------CCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHH
Q 022764 113 ------------------------------ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIH 156 (292)
Q Consensus 113 ------------------------------~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~ 156 (292)
..-.++++|.+||+++|.|||+||+||++.++...|..+ ....+
T Consensus 125 ~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~ 204 (514)
T KOG4370|consen 125 GLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQN 204 (514)
T ss_pred hHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHH
Confidence 001135778999999999999999999999999998876 34678
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccccc
Q 022764 157 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMW 207 (292)
Q Consensus 157 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~ 207 (292)
.++.++..||..||.++.++.-|+..|....-.|||++.||+++.+|++=-
T Consensus 205 efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~ 255 (514)
T KOG4370|consen 205 EFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQE 255 (514)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHH
Confidence 899999999999999999999999999998889999999999999998643
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.25 E-value=1.7e-11 Score=121.32 Aligned_cols=145 Identities=23% Similarity=0.262 Sum_probs=127.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCccc-ccCCHHHHHHHHHHHccCCCCCC-CCCCchhhhHHHHHHHHhhCCCC-CCc
Q 022764 65 YGKPVPHILVKCADYLVLSGLNSQFLFK-AEGDKKVIQHLVSMYNQDPNASL-PEGVNPFDVAALAKYYLASLPEP-LTT 141 (292)
Q Consensus 65 ~~~~vP~~l~~~i~~l~~~gl~~eGIFR-~~g~~~~i~~l~~~~~~~~~~~~-~~~~d~~~va~lLK~fLr~Lp~P-Li~ 141 (292)
++..+|.++..|+.+++.+|+..+|||| ++|....+...+.++.++..... ..+.+... |.++|.|++.+.+| .++
T Consensus 214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 4789999999999999999999999999 99999999999999988844332 22344455 99999999999999 999
Q ss_pred hhhhHHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCC
Q 022764 142 FELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 210 (292)
Q Consensus 142 ~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~ 210 (292)
++.+..+.+.. ++...++.++..+|..+..++.+++.|+...+..++.|.|++.|+++||||.++..+.
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e 367 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE 367 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence 99999988773 3447788899999999999999999999999999999999999999999999987664
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.94 E-value=8.9e-09 Score=97.38 Aligned_cols=145 Identities=17% Similarity=0.280 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCcc---cccCCHHHHHHHHH-HHccCCCCC---------CCCCCchhhhHHHHHHHHhh
Q 022764 68 PVPHILVKCADYLVLSGLNSQFLF---KAEGDKKVIQHLVS-MYNQDPNAS---------LPEGVNPFDVAALAKYYLAS 134 (292)
Q Consensus 68 ~vP~~l~~~i~~l~~~gl~~eGIF---R~~g~~~~i~~l~~-~~~~~~~~~---------~~~~~d~~~va~lLK~fLr~ 134 (292)
.|-.+|..|.+.|..+|+++++|| |-.-+...++.+.. .+..+.... .....++|+++++||-.+..
T Consensus 7 ev~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 7 EVKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344578899999999999999997 77778888877655 444443321 12357999999999999999
Q ss_pred CCCCCCchhhhHHHHhHHH----HHHHHHHHH-hhhc-HHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccC
Q 022764 135 LPEPLTTFELYDEIKGARS----SIHAMRNTL-KKLS-NVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 208 (292)
Q Consensus 135 Lp~PLi~~~~~~~~~~~~~----~~~~l~~ll-~~LP-~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~ 208 (292)
||+.+++++.|..|..... ...+...++ ..|| +.|..++..++.+|..|+.|+..|+|+...||..+|+-.|..
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 9999999999999987743 245566655 4564 777899999999999999999999999999999999999987
Q ss_pred CCCC
Q 022764 209 KERK 212 (292)
Q Consensus 209 ~~~~ 212 (292)
+...
T Consensus 167 ~~~~ 170 (420)
T PF08101_consen 167 PDFG 170 (420)
T ss_pred CCcc
Confidence 7655
No 59
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.07 E-value=2.6e-06 Score=82.99 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=121.5
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHH-----HHHccCCCCCCCCCCchh
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLV-----SMYNQDPNASLPEGVNPF 122 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~-----~~~~~~~~~~~~~~~d~~ 122 (292)
....||+||...+.. +...|..+......+.+.+..++++||......-+.+-. +....+..++. +...+|
T Consensus 413 ~kv~fdaPlS~~c~d---~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv-~sspv~ 488 (741)
T KOG4724|consen 413 AKVPFDAPLSVFCAD---QGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDV-PSSPVH 488 (741)
T ss_pred hhCcCCCchhhcccc---cCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccC-CCCCch
Confidence 466899999998875 456777777777888889999999998854443332211 12222333443 457899
Q ss_pred hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHH--------HHhhhcHHHHHHHHHHHHHHHHHHhccc
Q 022764 123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRN--------TLKKLSNVNFMTLEYVTALLLRVSQKSL 188 (292)
Q Consensus 123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~--------ll~~LP~~n~~~L~~L~~~L~~V~~~~~ 188 (292)
++++++|.|+|.+|..++..+...+..++ .++.++++. .....|..+.........-...+..++.
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 99999999999999999999999888776 357888888 7777888877777776666677778899
Q ss_pred ccCCChhhhhHhhccccccCCC
Q 022764 189 LNKMDARSLAMEMAPVIMWQKE 210 (292)
Q Consensus 189 ~NkMt~~nLa~vf~P~Ll~~~~ 210 (292)
.+.|+..|++.|-.|+......
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred cccccccccCCCCCccccchhh
Confidence 9999999999999988876553
No 60
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=96.50 E-value=0.00019 Score=69.27 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=128.1
Q ss_pred HHHHhcCCCCCCccCCCHHHHHhhhcCCCCCCH-HHHHHHHHHHH---cC--CCCcCcccccCCHHHHHHHHHHHccCCC
Q 022764 39 IERWQKGVASTDVFGVPIEVTVQRQQYGKPVPH-ILVKCADYLVL---SG--LNSQFLFKAEGDKKVIQHLVSMYNQDPN 112 (292)
Q Consensus 39 ~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~vP~-~l~~~i~~l~~---~g--l~~eGIFR~~g~~~~i~~l~~~~~~~~~ 112 (292)
+..--........||.-|...... .|+.+|. .+.+||..+.. ++ .+..|.|++..+ .|..
T Consensus 197 meTL~sl~~~~~~~gl~ltr~~~~--~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D------------~gae 262 (670)
T KOG1449|consen 197 METLSSLVDSNLNCGLVLTRMEVG--LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVED------------EGAE 262 (670)
T ss_pred HHHHhcccccCccccceecceeec--cccccchhhhccchhccccchhccCCcccCcceecccc------------cccc
Confidence 444444555677888887766443 4779999 88888887765 22 344566666543 3333
Q ss_pred CC---CCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccc
Q 022764 113 AS---LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL 189 (292)
Q Consensus 113 ~~---~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~ 189 (292)
.+ +....|+..+...++.|.+.+|.|+.. ..|..=-.....++...-....+++.|+.+-.+|..||.+.+.-.
T Consensus 263 ~d~~af~~p~di~v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-- 339 (670)
T KOG1449|consen 263 VDGEAFRWPSDIVVESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-- 339 (670)
T ss_pred ccccccCCccceeeeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc--
Confidence 32 222468888999999999999999544 333322222334555666666799999999999999999888732
Q ss_pred cCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccc
Q 022764 190 NKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEM 250 (292)
Q Consensus 190 NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~ 250 (292)
.+++|++.|+++|++. +......++-.-...+..++.+.|++++-.|..+-+++.
T Consensus 340 -----~s~~I~~~~~~~r~pp-tL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i~~ed 394 (670)
T KOG1449|consen 340 -----KSLAIVWSPNLFRPPP-TLNGADTHLLSGLNVHTAICDFFIENSESLFVNDIDEED 394 (670)
T ss_pred -----ccceeecCCCCCCCCC-CCCchhhhhcccCCcceeecccchhhhhhhhhcccChhh
Confidence 7999999999999886 322233333333445667888888888888876666554
No 61
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.41 E-value=0.0015 Score=68.40 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=125.5
Q ss_pred ccCCCHHHHHhhhcCCCCCCHHHHH-HHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCC--CC--CC--CCchhh
Q 022764 51 VFGVPIEVTVQRQQYGKPVPHILVK-CADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SL--PE--GVNPFD 123 (292)
Q Consensus 51 vFG~~L~~l~~~~~~~~~vP~~l~~-~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~--~~--~~d~~~ 123 (292)
++|+++..+..........|.++.. +.......|....|+||.++....+...+..++..... +. .. ..++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 8888887763212235677888888 77777788999999999999999999999998866521 11 01 223455
Q ss_pred hHHHHHHHHhhC--CCCCCchhhhHHHHhH----------------------HHHH-------HHHHHHHh----hhcHH
Q 022764 124 VAALAKYYLASL--PEPLTTFELYDEIKGA----------------------RSSI-------HAMRNTLK----KLSNV 168 (292)
Q Consensus 124 va~lLK~fLr~L--p~PLi~~~~~~~~~~~----------------------~~~~-------~~l~~ll~----~LP~~ 168 (292)
..++++.|+|.+ |.+....+.|..+... .+++ ..+..+.. .+|..
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i 621 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFI 621 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHH
Confidence 667999999999 9998888888887732 1234 67788888 89999
Q ss_pred HHHHHHHHHHHHHHHHhccccc-CCCh-hhhhHhhcc----ccccCCCCC
Q 022764 169 NFMTLEYVTALLLRVSQKSLLN-KMDA-RSLAMEMAP----VIMWQKERK 212 (292)
Q Consensus 169 n~~~L~~L~~~L~~V~~~~~~N-kMt~-~nLa~vf~P----~Ll~~~~~~ 212 (292)
...++.++..|+.++......| .|+. +||..+|++ +.+...+..
T Consensus 622 ~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih 671 (918)
T KOG1453|consen 622 LKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIH 671 (918)
T ss_pred HHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChH
Confidence 9999999999999999988888 7887 999999999 666666544
No 62
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=95.92 E-value=0.0016 Score=63.01 Aligned_cols=68 Identities=22% Similarity=0.144 Sum_probs=53.2
Q ss_pred HHHHHHHHhcccccCCChhhhhHhhccccccCCCCChHHHH------HHHHHhccCccccccccccCccccccccc
Q 022764 177 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYR------QYWNHASRSSSKNMEPATPHGEWDMLADE 246 (292)
Q Consensus 177 ~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~------~~~~~~~~~~~~i~e~li~~~~~~f~~~~ 246 (292)
++||..|+.++..+.|.+.|||+||+|+|+|++..+..... ..+ ..+.++.|+|+..++-|.+|+.--
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~--avq~qsvV~EfilnhvDvlF~~~a 74 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFS--AVQAQSVVSEFILNHVDVLFLPTA 74 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHH--HHHhhhhhhhhcccccceecCCcC
Confidence 36899999999999999999999999999998865543332 111 234567789999999999988543
No 63
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=95.84 E-value=0.012 Score=60.09 Aligned_cols=141 Identities=13% Similarity=0.038 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcC---cccccC-CHHHHHHHHHHHcc-CCCC-CCCCCCchh--hhHHHHH--HHHhhCC
Q 022764 67 KPVPHILVKCADYLVLSGLNSQF---LFKAEG-DKKVIQHLVSMYNQ-DPNA-SLPEGVNPF--DVAALAK--YYLASLP 136 (292)
Q Consensus 67 ~~vP~~l~~~i~~l~~~gl~~eG---IFR~~g-~~~~i~~l~~~~~~-~~~~-~~~~~~d~~--~va~lLK--~fLr~Lp 136 (292)
..-|.+..+-+.+|+..|+..|| |-|.+. +...|+.-...++. |... ...+..+|| .|...++ .-||..+
T Consensus 369 d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~ 448 (1100)
T KOG4271|consen 369 DGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQG 448 (1100)
T ss_pred cCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcc
Confidence 47799999999999999999999 889988 66666665555542 3322 222335788 4677777 6778777
Q ss_pred CCCCchhhhHHHHhH--------HHHHHHHHHHH-hh--hcHHHHH----HHHHHHHHHHHHHhcccccCCChh-hhhHh
Q 022764 137 EPLTTFELYDEIKGA--------RSSIHAMRNTL-KK--LSNVNFM----TLEYVTALLLRVSQKSLLNKMDAR-SLAME 200 (292)
Q Consensus 137 ~PLi~~~~~~~~~~~--------~~~~~~l~~ll-~~--LP~~n~~----~L~~L~~~L~~V~~~~~~NkMt~~-nLa~v 200 (292)
..+.+......+..+ ..++..+...+ .. .|.+|+. ++..++..+..++.++..|.|++. .-+.|
T Consensus 449 ~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aC 528 (1100)
T KOG4271|consen 449 QQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAAC 528 (1100)
T ss_pred cccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHh
Confidence 776666554444332 23555555444 34 5877776 666666667777788999999998 89999
Q ss_pred hcc-cccc
Q 022764 201 MAP-VIMW 207 (292)
Q Consensus 201 f~P-~Ll~ 207 (292)
.+| .+++
T Consensus 529 kS~~llL~ 536 (1100)
T KOG4271|consen 529 KSPHLLLR 536 (1100)
T ss_pred cChHHHHh
Confidence 999 4666
No 64
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=41.20 E-value=87 Score=30.16 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.0
Q ss_pred CchhhhHHHHHHHHhhCCCCCCchhhhHHHH
Q 022764 119 VNPFDVAALAKYYLASLPEPLTTFELYDEIK 149 (292)
Q Consensus 119 ~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~ 149 (292)
.|+|..++..|+|++..|+|.+|.++=..+.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r 148 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVAR 148 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHH
Confidence 6899999999999999999999976543333
No 65
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.51 E-value=28 Score=26.88 Aligned_cols=45 Identities=20% Similarity=0.050 Sum_probs=33.2
Q ss_pred CcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhC
Q 022764 89 FLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASL 135 (292)
Q Consensus 89 GIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~L 135 (292)
.=|+++|-.+++..++..+-.. +...+..++..+|+=|-.+++.|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e--~seleqeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKE--PSELEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccC--HHHhhHHHHHHHHHHHHHHHHHh
Confidence 4599999999999999988532 22234567777887777777765
No 66
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=30.63 E-value=80 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 155 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
++.++.....|++..+.+..|++.+...+.. |++..||..
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~~ 43 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAEK 43 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHHH
Confidence 4567777788999999999999999888765 677777764
No 67
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=30.22 E-value=58 Score=23.23 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.1
Q ss_pred cCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCC
Q 022764 88 QFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE 137 (292)
Q Consensus 88 eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~ 137 (292)
+|-|+++|+.. ++.+.+.++-. +.+ .+.+++|+.+-..+..+|.
T Consensus 5 ~~~~~v~G~~~-l~~l~~~~~~~----l~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 5 DGTYIVSGSTP-LDDLNELLGLD----LPE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TSEEEEETTSB-HHHHHHHHTS-----TTT-TTTSBHHHHHHHHHTSS--
T ss_pred CCEEEEEecCC-HHHHHHHHCcC----CCc-cchhhHHHHHHHHcCCCCC
Confidence 57899999865 67777888542 333 4677999999999999986
No 68
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=27.85 E-value=1.3e+02 Score=30.59 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 153 SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 153 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
.-++.++.....|++..+.+..|++.+...+.. ||+..||.
T Consensus 342 ~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~------~si~eLA~ 382 (638)
T PRK14101 342 AVFERIRQMRDALTPAERRVADLALNHPRSIIN------DPIVDIAR 382 (638)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------ccHHHHHH
Confidence 346778888899999999999999999998876 66667765
No 69
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=26.85 E-value=2.1e+02 Score=19.43 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=16.8
Q ss_pred hhcHHHH-HHHHHHHHHHHHHHh
Q 022764 164 KLSNVNF-MTLEYVTALLLRVSQ 185 (292)
Q Consensus 164 ~LP~~n~-~~L~~L~~~L~~V~~ 185 (292)
.|.-.|+ ..|+|++.+|+.+-.
T Consensus 29 DLsIqnY~~Fl~yi~eLL~~lq~ 51 (58)
T PF12491_consen 29 DLSIQNYHMFLRYITELLKELQS 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666 567899999998876
No 70
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.95 E-value=6.3e+02 Score=24.35 Aligned_cols=75 Identities=21% Similarity=0.164 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHcC------CCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCC
Q 022764 66 GKPVPHILVKCADYLVLSG------LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPL 139 (292)
Q Consensus 66 ~~~vP~~l~~~i~~l~~~g------l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PL 139 (292)
.++.|.++..+++.|.++- ...++..-.-.-...+++||..+.++.+.....+..+... .-..||..+|++.
T Consensus 30 r~R~P~Ilt~vid~L~~~~s~l~~k~g~~~~~d~k~ii~~l~~Lr~ei~~drpl~p~~~~~~D~d--~wN~~L~~l~~~~ 107 (434)
T KOG3870|consen 30 RDRWPIILTNVIDTLSRDKSDLIEKYGSEVVEDGKQIIKLLSKLRYEIQTDRPLQPLTGEEPDID--SWNEFLKKLPEAK 107 (434)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHH--HHHHHHHhCChhh
Confidence 4589999999999987542 1122222222333566777877877776644444444433 6678999999966
Q ss_pred Cch
Q 022764 140 TTF 142 (292)
Q Consensus 140 i~~ 142 (292)
.++
T Consensus 108 ~~w 110 (434)
T KOG3870|consen 108 RTW 110 (434)
T ss_pred hhh
Confidence 544
No 71
>PF13606 Ank_3: Ankyrin repeat
Probab=24.65 E-value=55 Score=18.68 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=12.4
Q ss_pred CchHHHHHHHHhhhh
Q 022764 266 FGAIEVVQCLMEQHN 280 (292)
Q Consensus 266 ~~~~~vv~~lIe~~~ 280 (292)
.++.++|++||++.-
T Consensus 12 ~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 12 NGNIEIVKYLLEHGA 26 (30)
T ss_pred hCCHHHHHHHHHcCC
Confidence 478899999999853
No 72
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=22.00 E-value=1e+02 Score=19.77 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.5
Q ss_pred HHHHHHHhhhcHHHHHHHHH
Q 022764 156 HAMRNTLKKLSNVNFMTLEY 175 (292)
Q Consensus 156 ~~l~~ll~~LP~~n~~~L~~ 175 (292)
+.+..++..||+..+.++..
T Consensus 2 ~~l~~~l~~L~~~~r~i~~l 21 (54)
T PF08281_consen 2 EALQQALAQLPERQREIFLL 21 (54)
T ss_dssp HHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 56788999999999987754
No 73
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.89 E-value=5.3e+02 Score=24.08 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHcCC-CCcCcccccCCHHHHHHHHHHHccCCCCCCCC---------------------CCchhhhH
Q 022764 68 PVPHILVKCADYLVLSGL-NSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE---------------------GVNPFDVA 125 (292)
Q Consensus 68 ~vP~~l~~~i~~l~~~gl-~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~---------------------~~d~~~va 125 (292)
..|.++.++++. .+|+ -+-| =.=||-...+..+.+.+|+.....+.+ +.|.+..+
T Consensus 112 glP~i~~~~~~~--~~GLILVTG-pTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~ 188 (353)
T COG2805 112 GLPPIVRELAES--PRGLILVTG-PTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFA 188 (353)
T ss_pred CCCHHHHHHHhC--CCceEEEeC-CCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHH
Confidence 678887774332 2332 1111 123677788999999998765332111 45778899
Q ss_pred HHHHHHHhhCCCCCCchhhhH------HHHhH------------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcc
Q 022764 126 ALAKYYLASLPEPLTTFELYD------EIKGA------------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKS 187 (292)
Q Consensus 126 ~lLK~fLr~Lp~PLi~~~~~~------~~~~~------------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~ 187 (292)
..||.-||+=|+=++--++-+ .+.++ ....+.+..++.-.|++++.-.+.-+
T Consensus 189 ~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti~RiidvFp~~ek~~vR~~L---------- 258 (353)
T COG2805 189 NALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRIIDVFPAEEKDQVRSQL---------- 258 (353)
T ss_pred HHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHHHHHHHHhCChhhhHHHHHHH----------
Confidence 999999999999877554322 12222 24678889999999999987765443
Q ss_pred cccCCChhhhhHhhccccccCCC
Q 022764 188 LLNKMDARSLAMEMAPVIMWQKE 210 (292)
Q Consensus 188 ~~NkMt~~nLa~vf~P~Ll~~~~ 210 (292)
++.|-.|++-.|++..+
T Consensus 259 ------a~sL~aVisQ~L~~~~~ 275 (353)
T COG2805 259 ------AESLRAVISQRLLPKKD 275 (353)
T ss_pred ------HHHHHHHHhhhceeccC
Confidence 34566666666666544
Done!