Query 022764
Match_columns 292
No_of_seqs 227 out of 1630
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 3.6E-45 1.2E-49 317.9 20.9 169 43-213 11-187 (214)
2 1tx4_A P50-rhogap; complex (GT 100.0 5.6E-45 1.9E-49 313.1 18.8 166 46-211 3-173 (198)
3 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.2E-44 4.2E-49 311.9 19.0 166 48-215 5-179 (202)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 1.4E-44 4.8E-49 317.3 19.2 205 45-292 15-228 (229)
5 3msx_B RHO GTPase-activating p 100.0 3.1E-44 1.1E-48 309.1 18.6 162 47-213 8-175 (201)
6 2ee4_A RHO GTPase activating p 100.0 1.8E-44 6.1E-49 312.5 16.7 166 44-212 5-177 (209)
7 1ow3_A RHO-GTPase-activating p 100.0 3.9E-44 1.3E-48 316.9 18.8 167 45-211 38-209 (242)
8 3fk2_A Glucocorticoid receptor 100.0 5.3E-44 1.8E-48 316.8 16.7 168 43-213 45-219 (246)
9 1pbw_A Rhogap domain, phosphat 100.0 2.7E-44 9.4E-49 312.8 13.5 165 48-214 4-178 (216)
10 1f7c_A Rhogap protein; GTPase 100.0 3.2E-43 1.1E-47 309.0 14.0 204 40-289 6-222 (231)
11 3kuq_A RHO GTPase-activating p 100.0 1.7E-42 6E-47 303.7 16.7 167 44-212 13-185 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 2E-41 6.9E-46 291.6 18.2 157 53-212 3-166 (201)
13 3eap_A RHO GTPase-activating p 100.0 4.6E-42 1.6E-46 308.3 12.0 163 46-211 59-227 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 1.5E-39 5.1E-44 312.5 17.4 163 49-213 267-438 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 4.5E-40 1.5E-44 285.3 6.6 157 47-212 18-177 (214)
16 3qis_A Inositol polyphosphate 100.0 1.1E-36 3.9E-41 284.0 15.1 166 45-212 138-340 (366)
17 4h5l_A Nucleoprotein; nucleoca 35.7 71 0.0024 27.3 6.0 101 95-203 18-118 (253)
18 3iwf_A Transcription regulator 27.1 58 0.002 23.7 3.6 40 155-200 5-44 (107)
19 3u5c_N S27A, YS15, 40S ribosom 27.0 2E+02 0.0068 22.5 6.7 109 18-127 30-149 (151)
20 2o3f_A Putative HTH-type trans 26.3 75 0.0026 23.2 4.2 39 156-200 10-48 (111)
21 2p4p_A Hypothetical protein HD 25.0 57 0.0019 22.6 3.1 48 87-138 7-54 (86)
22 2p13_A CBS domain; alpha-beta 23.4 70 0.0024 22.3 3.4 47 87-138 13-60 (90)
23 2xpp_A IWS1, ECU08_0440; trans 20.3 51 0.0017 25.7 2.2 21 122-142 60-80 (145)
24 2pls_A CBS domain protein; APC 20.0 93 0.0032 21.4 3.4 48 87-138 7-56 (86)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.6e-45 Score=317.91 Aligned_cols=169 Identities=22% Similarity=0.419 Sum_probs=155.7
Q ss_pred hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC--CCc
Q 022764 43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVN 120 (292)
Q Consensus 43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~--~~d 120 (292)
.++..+.++||++|+++++++ +..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++...++.. ..|
T Consensus 11 ~~~~~~~~vFG~~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHTSCCCCSTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred hcCCCcCCccCCcHHHHHHHc--CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 367778999999999999876 5699999999999999999999999999999999999999999987666533 259
Q ss_pred hhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCCh
Q 022764 121 PFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDA 194 (292)
Q Consensus 121 ~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~ 194 (292)
+|++|++||.|||+||+||+|.++|+.|+++ ..+++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|++
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~ 168 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMST 168 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence 9999999999999999999999999999876 3578999999999999999999999999999999999999999
Q ss_pred hhhhHhhccccccCCCCCh
Q 022764 195 RSLAMEMAPVIMWQKERKP 213 (292)
Q Consensus 195 ~nLa~vf~P~Ll~~~~~~~ 213 (292)
.|||+||||+|+|++..+.
T Consensus 169 ~NLa~vf~P~Ll~~~~~~~ 187 (214)
T 3byi_A 169 QSLGIVFGPTLLRAENETG 187 (214)
T ss_dssp HHHHHHHHHHHHCCTTSSS
T ss_pred HHhHHHhccccCCCCCccH
Confidence 9999999999999987653
No 2
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=5.6e-45 Score=313.10 Aligned_cols=166 Identities=27% Similarity=0.476 Sum_probs=153.2
Q ss_pred CCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhH
Q 022764 46 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA 125 (292)
Q Consensus 46 ~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va 125 (292)
..+.++||++|++++++.+....||.++.+|+++|+++|+++|||||++|+..+++++++.+|+|...++....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHHH
Confidence 45678999999999988654469999999999999999999999999999999999999999998877654346899999
Q ss_pred HHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 126 ALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|+||+.||++|+.|++.|+|+++|||+|
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV 162 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhh
Confidence 99999999999999999999999886 3578999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 022764 201 MAPVIMWQKER 211 (292)
Q Consensus 201 f~P~Ll~~~~~ 211 (292)
|||+|+|+++.
T Consensus 163 f~P~Ll~~~~~ 173 (198)
T 1tx4_A 163 FGPNLLWAKDA 173 (198)
T ss_dssp HHHHHCCCSSH
T ss_pred hcccccCCCCc
Confidence 99999999753
No 3
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=311.93 Aligned_cols=166 Identities=23% Similarity=0.364 Sum_probs=150.2
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-CCCCC--CCCchhhh
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDV 124 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~~~--~~~d~~~v 124 (292)
..++||++|++++++. +..+|.++.+|+++|+++|+++|||||++|+..+++.|++.+|+++ ..++. ...|+|++
T Consensus 5 ~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v 82 (202)
T 2osa_A 5 VKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII 82 (202)
T ss_dssp --CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred CCCccCCChHHHHHHc--CCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence 3689999999999886 4589999999999999999999999999999999999999999853 33432 23699999
Q ss_pred HHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhh
Q 022764 125 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 198 (292)
Q Consensus 125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa 198 (292)
|++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||++|+.+|.||+.||++|+.|++.|+||+.|||
T Consensus 83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa 162 (202)
T 2osa_A 83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLG 162 (202)
T ss_dssp HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 999999999999999999999999886 35789999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCChHH
Q 022764 199 MEMAPVIMWQKERKPEF 215 (292)
Q Consensus 199 ~vf~P~Ll~~~~~~~~~ 215 (292)
+||||+|+++++.+...
T Consensus 163 ~vf~P~Ll~~~~~~~~~ 179 (202)
T 2osa_A 163 IVFGPTLMRSPELDAMA 179 (202)
T ss_dssp HHHHHHHCCCCCCCHHH
T ss_pred HHHccccCCCCCccHHH
Confidence 99999999999877543
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=317.31 Aligned_cols=205 Identities=20% Similarity=0.402 Sum_probs=162.6
Q ss_pred CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCC---Cch
Q 022764 45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG---VNP 121 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~---~d~ 121 (292)
+..+.++||++|++++++. +..||.+|.+|+++|+++|+ +|||||++|+..++++|++.++.+...++... .|+
T Consensus 15 ~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 15 YFQGERVFGCDLGEHLLNS--GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp ---CCCSTTSCHHHHHHHH--CCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCCCeECcchHHHHHhc--CCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 4457899999999999886 55899999999999999999 89999999999999999999999876654332 599
Q ss_pred hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764 122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 195 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~ 195 (292)
|++|++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+.+++.|+|++.
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 999999999999999999999999999887 46788999999999999999999999999999999999999999
Q ss_pred hhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCCchHHHHHHH
Q 022764 196 SLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCL 275 (292)
Q Consensus 196 nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~~~~~vv~~l 275 (292)
|||+||||+|+|++..+....... ...++...+. .++++|
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~-~vve~L 211 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACFSGT---------------------------------------AAFMEVRIQS-VVVEFI 211 (229)
T ss_dssp HHHHHHHHHHCCC----------------------------------------------------------CH-HHHHHH
T ss_pred HHHHHHhccccCCCcccccccchH---------------------------------------HHHHHHHHHH-HHHHHH
Confidence 999999999999986542211100 0011122233 499999
Q ss_pred HhhhhccccccCccccC
Q 022764 276 MEQHNAIFTDANETVWR 292 (292)
Q Consensus 276 Ie~~~~iF~~~~~~~~~ 292 (292)
|+||+.||+++.+++++
T Consensus 212 I~~~~~iF~~~~~~~~~ 228 (229)
T 3iug_A 212 LNHVDVLFSGRISMAMQ 228 (229)
T ss_dssp HHTHHHHTC--------
T ss_pred HHhHHHhCCCcHHhhcc
Confidence 99999999998887753
No 5
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=309.11 Aligned_cols=162 Identities=22% Similarity=0.389 Sum_probs=150.3
Q ss_pred CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764 47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 126 (292)
Q Consensus 47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 126 (292)
...++||++|+++++++ .||.++.+|+++|+++|+++|||||++|+..+++++++.++.|...++ +..|+|++|+
T Consensus 8 ~~~~vFG~~L~~~~~~~----~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~-~~~d~~~va~ 82 (201)
T 3msx_B 8 MPGQLFGISLPNICEND----NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHL-DCESIFVIAS 82 (201)
T ss_dssp --CCCTTSCHHHHSGGG----CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCT-TSSCHHHHHH
T ss_pred CCCCeeCCcHHHHhcCC----CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCC-CcccHHHHHH
Confidence 35789999999998753 699999999999999999999999999999999999999999987665 5689999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
+||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|+||+.||++|+.|++.|+||++|||+|
T Consensus 83 lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (201)
T 3msx_B 83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVC 162 (201)
T ss_dssp HHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhh
Confidence 9999999999999999999999876 4578999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCh
Q 022764 201 MAPVIMWQKERKP 213 (292)
Q Consensus 201 f~P~Ll~~~~~~~ 213 (292)
|||+|+|++....
T Consensus 163 f~P~ll~~~~~~~ 175 (201)
T 3msx_B 163 VAPSILWPPASSS 175 (201)
T ss_dssp HHHHHCCCCTTSC
T ss_pred hhccccCCCCCCC
Confidence 9999999987654
No 6
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.8e-44 Score=312.48 Aligned_cols=166 Identities=30% Similarity=0.497 Sum_probs=151.8
Q ss_pred cCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCchh
Q 022764 44 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPF 122 (292)
Q Consensus 44 ~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~ 122 (292)
++....++||++|++++.+ +..||.++.+|+++|+++|+++|||||++|+..+++.|++.++++...++.. +.|+|
T Consensus 5 ~~~~~~~~FG~~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~ 81 (209)
T 2ee4_A 5 SSGWESNYFGMPLQDLVTA---EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVN 81 (209)
T ss_dssp SSSSCCSSSSSCHHHHSCS---SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHH
T ss_pred CCCCCCCeeCCcHHHHHhc---CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHH
Confidence 3456788999999999875 4589999999999999999999999999999999999999999987665422 47999
Q ss_pred hhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhh
Q 022764 123 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 196 (292)
Q Consensus 123 ~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~n 196 (292)
++|++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|+||+.||++|+.+++.|+|++.|
T Consensus 82 ~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 161 (209)
T 2ee4_A 82 AVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN 161 (209)
T ss_dssp HHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 99999999999999999999999999876 457899999999999999999999999999999999999999999
Q ss_pred hhHhhccccccCCCCC
Q 022764 197 LAMEMAPVIMWQKERK 212 (292)
Q Consensus 197 La~vf~P~Ll~~~~~~ 212 (292)
||+||||+|+|++..+
T Consensus 162 Laivf~P~L~~~~~~~ 177 (209)
T 2ee4_A 162 LSICFWPTLMRPDFEN 177 (209)
T ss_dssp HHHHHHHHHSCCCCCS
T ss_pred HHHHhcccccCCCCcc
Confidence 9999999999987544
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=3.9e-44 Score=316.86 Aligned_cols=167 Identities=26% Similarity=0.473 Sum_probs=153.8
Q ss_pred CCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764 45 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 124 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 124 (292)
+..+.++||++|++++.+.+.+..||.++.+|+++|+++|+++|||||++|+..++++|++.+|+|...++....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45678899999999998865556999999999999999999999999999999999999999999987765333599999
Q ss_pred HHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 125 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
|++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|+||+.||++|++|++.|+||++|||+
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 197 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 197 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHH
Confidence 999999999999999999999999886 357899999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCC
Q 022764 200 EMAPVIMWQKER 211 (292)
Q Consensus 200 vf~P~Ll~~~~~ 211 (292)
||||+|+++++.
T Consensus 198 vf~P~Ll~~~~~ 209 (242)
T 1ow3_A 198 VFGPNLLWAKDA 209 (242)
T ss_dssp HHHHHHCCCSSH
T ss_pred hhcchhCCCCCc
Confidence 999999998753
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-44 Score=316.75 Aligned_cols=168 Identities=27% Similarity=0.512 Sum_probs=151.9
Q ss_pred hcCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCC-CCch
Q 022764 43 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNP 121 (292)
Q Consensus 43 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~ 121 (292)
.+...+.++||+||++++.. +..||.+|.+|+++|+++|+++|||||++|+..+++.|++.+|.+...++.. ++|+
T Consensus 45 ~~~~~~~~vFGv~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dv 121 (246)
T 3fk2_A 45 TKATWESNYFGVPLTTVVTP---EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTV 121 (246)
T ss_dssp ----CCCSSTTSCGGGGCCS---SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCH
T ss_pred cccccCCCeeCCCHHHHhcC---CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcH
Confidence 34556789999999999864 4689999999999999999999999999999999999999999988766533 4799
Q ss_pred hhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChh
Q 022764 122 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 195 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~ 195 (292)
|+||++||.|||+||+||+|.++|+.|+++ ..++..++.++.+||+.|+.+|.||+.||++|+.+++.|+||+.
T Consensus 122 h~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~ 201 (246)
T 3fk2_A 122 NTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSE 201 (246)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchH
Confidence 999999999999999999999999999987 35789999999999999999999999999999999999999999
Q ss_pred hhhHhhccccccCCCCCh
Q 022764 196 SLAMEMAPVIMWQKERKP 213 (292)
Q Consensus 196 nLa~vf~P~Ll~~~~~~~ 213 (292)
|||+||||+|+|++..+.
T Consensus 202 NLAivf~P~Llrp~~~~~ 219 (246)
T 3fk2_A 202 NLSICFWPTLMRPDFSTM 219 (246)
T ss_dssp HHHHHHHHHHHCCCSSSS
T ss_pred HhHHHhcccccCCCCccH
Confidence 999999999999876554
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=2.7e-44 Score=312.80 Aligned_cols=165 Identities=19% Similarity=0.348 Sum_probs=145.6
Q ss_pred CCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCC-CCCCCCCchhhhHH
Q 022764 48 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAA 126 (292)
Q Consensus 48 ~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~va~ 126 (292)
...+||++|++++++...+..||.+|.+|+++|+++|+++|||||++|+..+ ++|++.++++.. .++ +.+|+|+||+
T Consensus 4 d~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~-~~~dv~~va~ 81 (216)
T 1pbw_A 4 DVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDL-EMIDVHVLAD 81 (216)
T ss_dssp --------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCG-GGBCHHHHHH
T ss_pred ccccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCc-cccCHHHHHH
Confidence 3569999999999876667899999999999999999999999999999999 999999998753 343 5689999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhHH-------HHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHhcccccCCChhhh
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 197 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nL 197 (292)
+||.|||+||+||+|.++|+.|+++. ++++.++.++. +||+.|+.+|+||+.||++|+.|++.|+|+++||
T Consensus 82 lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 161 (216)
T 1pbw_A 82 AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 161 (216)
T ss_dssp HHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999998873 57889999999 9999999999999999999999999999999999
Q ss_pred hHhhccccccCCCCChH
Q 022764 198 AMEMAPVIMWQKERKPE 214 (292)
Q Consensus 198 a~vf~P~Ll~~~~~~~~ 214 (292)
|+||||+|+|++..+..
T Consensus 162 Aivf~P~Ll~~~~~~~~ 178 (216)
T 1pbw_A 162 SEIFSPMLFRFSAASSD 178 (216)
T ss_dssp HHHHHHHHHTCSSCCHH
T ss_pred HHHHhhhcCCCCCCchh
Confidence 99999999999987753
No 10
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=3.2e-43 Score=308.99 Aligned_cols=204 Identities=21% Similarity=0.318 Sum_probs=148.7
Q ss_pred HHHhcCCC-CCCccCCCHHHHHhhhcC-CCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHH-HHccCC--CCC
Q 022764 40 ERWQKGVA-STDVFGVPIEVTVQRQQY-GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVS-MYNQDP--NAS 114 (292)
Q Consensus 40 ~~~~~~~~-~~~vFG~~L~~l~~~~~~-~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~-~~~~~~--~~~ 114 (292)
+.|..... ..++||+||...++++.. +..+|.+|.+|+++|+++|+++|||||++|+..+++++++ .+|.+. ..+
T Consensus 6 ~~W~~~m~~~~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~ 85 (231)
T 1f7c_A 6 RLWMEAMDGREPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETE 85 (231)
T ss_dssp -------------------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------C
T ss_pred HHHHHHcCCCCCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccC
Confidence 34444332 467999999998766432 3467999999999999999999999999999999999986 577763 333
Q ss_pred CC--CCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhc
Q 022764 115 LP--EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQK 186 (292)
Q Consensus 115 ~~--~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~ 186 (292)
+. ...|+|+||++||.|||+||+||+|.++|+.|+++ ..++..++.++.+||+.|+.+|+||+.||++|+.|
T Consensus 86 l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~ 165 (231)
T 1f7c_A 86 TEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADN 165 (231)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 32 24799999999999999999999999999999886 45789999999999999999999999999999999
Q ss_pred ccccCCChhhhhHhhccccccCCCCChHHHHHHHHHhccCccccccccccCccccccccccccccccCCCCCCCCCCCCC
Q 022764 187 SLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDF 266 (292)
Q Consensus 187 ~~~NkMt~~nLa~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~i~e~li~~~~~~f~~~~~~~~~~~s~~p~~~~~~~~~ 266 (292)
++.|+|++.|||+||||+|++++..+..... +...
T Consensus 166 s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~---------------------------------------------~~~~ 200 (231)
T 1f7c_A 166 HKQNLMTVANLGVVFGPTLLRPQEETVAAIM---------------------------------------------DIKF 200 (231)
T ss_dssp HHHHCCCHHHHHHHHHHHHSCC---CCSGGG---------------------------------------------GHHH
T ss_pred CCCCCCCHHHHHHHhccccCCCCcccHHHHH---------------------------------------------HHHH
Confidence 9999999999999999999998865421110 0011
Q ss_pred chHHHHHHHHhhhhccccccCcc
Q 022764 267 GAIEVVQCLMEQHNAIFTDANET 289 (292)
Q Consensus 267 ~~~~vv~~lIe~~~~iF~~~~~~ 289 (292)
+ ..+|++||+||+.||.+.++.
T Consensus 201 ~-~~vve~LI~~~~~iF~~~~~~ 222 (231)
T 1f7c_A 201 Q-NIVIEILIENHEKIFNTVPET 222 (231)
T ss_dssp H-HHHHHHHHHTHHHHHHSCCC-
T ss_pred H-HHHHHHHHHHHHHhCCCCCCC
Confidence 2 238999999999999988764
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=303.75 Aligned_cols=167 Identities=30% Similarity=0.412 Sum_probs=152.7
Q ss_pred cCCCCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhh
Q 022764 44 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD 123 (292)
Q Consensus 44 ~~~~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~ 123 (292)
.+..+.++||+||.+++++. +..||.+|.+|+++|+++|+++|||||++|+..++++|++.++.++.....++.|+|+
T Consensus 13 ~~~~~~~vFGv~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~ 90 (228)
T 3kuq_A 13 NLYFQGSVFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYD 90 (228)
T ss_dssp -CBCTTSSTTCCHHHHHHHH--SSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHH
T ss_pred CCCCCCCEECCchHHHHHHc--CCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHH
Confidence 34567899999999999886 4689999999999999999999999999999999999999998765444446789999
Q ss_pred hHHHHHHHHhhCCCCCCchhhhHHHHhHH------HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhh
Q 022764 124 VAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 197 (292)
Q Consensus 124 va~lLK~fLr~Lp~PLi~~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nL 197 (292)
||++||.|||+||+||+|.++|+.|+++. ++++.++.++.+||+.|+.+|.||+.||++|+.+++.|+||+.||
T Consensus 91 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 170 (228)
T 3kuq_A 91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170 (228)
T ss_dssp HHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHh
Confidence 99999999999999999999999999873 478999999999999999999999999999999999999999999
Q ss_pred hHhhccccccCCCCC
Q 022764 198 AMEMAPVIMWQKERK 212 (292)
Q Consensus 198 a~vf~P~Ll~~~~~~ 212 (292)
|+||||+|||++..+
T Consensus 171 Aivf~P~Ll~~~~~~ 185 (228)
T 3kuq_A 171 AVCLAPSLFHLNTLK 185 (228)
T ss_dssp HHHHHHHHHTCCCC-
T ss_pred HHHHhhhhcCCCCCC
Confidence 999999999988654
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=291.60 Aligned_cols=157 Identities=27% Similarity=0.359 Sum_probs=141.3
Q ss_pred CCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCC-chhhhHHHHHHH
Q 022764 53 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV-NPFDVAALAKYY 131 (292)
Q Consensus 53 G~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~-d~~~va~lLK~f 131 (292)
|..|++++.+ .+..||.++.+|+++|+++|+++|||||++|+..++++|++.+++|......... |+|++|++||.|
T Consensus 3 ~g~L~~~~~~--~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~f 80 (201)
T 2ovj_A 3 EGMLADFVSQ--TSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDF 80 (201)
T ss_dssp CCCGGGGCCS--SSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHH
T ss_pred CCcHHHHhcc--cCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHH
Confidence 4567777655 3679999999999999999999999999999999999999999998765433444 999999999999
Q ss_pred HhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcccc
Q 022764 132 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 205 (292)
Q Consensus 132 Lr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~L 205 (292)
||+||+||+|.++|+.|+++ ..+++.++.++.+||+.|+.+|.||+.||++|+++ +.|+|+++|||+||||+|
T Consensus 81 lreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~l 159 (201)
T 2ovj_A 81 LRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTI 159 (201)
T ss_dssp HHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhh
Confidence 99999999999999999987 35788999999999999999999999999999996 689999999999999999
Q ss_pred ccCCCCC
Q 022764 206 MWQKERK 212 (292)
Q Consensus 206 l~~~~~~ 212 (292)
++++..+
T Consensus 160 l~~~~~~ 166 (201)
T 2ovj_A 160 VAHAVPN 166 (201)
T ss_dssp TCCSSSS
T ss_pred cCCCCCC
Confidence 9987654
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.6e-42 Score=308.27 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=135.6
Q ss_pred CCCCCccCCCHHHHHhhhc-CCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhh
Q 022764 46 VASTDVFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 124 (292)
Q Consensus 46 ~~~~~vFG~~L~~l~~~~~-~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 124 (292)
..+.++||+||++++++.. .+..||.+|.+|+.+|++ |+++|||||++|+...++.|++.+|.|... ....|+|++
T Consensus 59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~--~~~~~~~~v 135 (271)
T 3eap_A 59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDI 135 (271)
T ss_dssp --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC--cccccHHHH
Confidence 3467899999999876432 245799999999999975 799999999999999999999999988754 345799999
Q ss_pred HHHHHHHHhhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 125 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 125 a~lLK~fLr~Lp~PLi~~~~~~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
|++||.|||+||+||+|.++|+.|+++ .++...++.++..||+.|+.+|.||+.||++|+.+++.|+||+.|||+
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 215 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV 215 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 999999999999999999999999987 346778888999999999999999999999999999999999999999
Q ss_pred hhccccccCCCC
Q 022764 200 EMAPVIMWQKER 211 (292)
Q Consensus 200 vf~P~Ll~~~~~ 211 (292)
||||+|+++++.
T Consensus 216 vf~P~Ll~~~~~ 227 (271)
T 3eap_A 216 IFAPNLLQTSEG 227 (271)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHhHhccCCCC
Confidence 999999999864
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=1.5e-39 Score=312.47 Aligned_cols=163 Identities=23% Similarity=0.382 Sum_probs=149.3
Q ss_pred CCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCC-CCCCC--CCCchhhhH
Q 022764 49 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDVA 125 (292)
Q Consensus 49 ~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~~~--~~~d~~~va 125 (292)
.++||++|++++++. +..||.+|..|+++|+++|+.+|||||++|+.+.+++|++.+|++. ..++. ...|+|+||
T Consensus 267 ~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va 344 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT 344 (463)
T ss_dssp CCCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHH
T ss_pred ccccccccchhhhcc--CCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhh
Confidence 579999999999876 5699999999999999999999999999999999999999999754 23332 236999999
Q ss_pred HHHHHHHhhCCCCCCchhhhHHHHhH------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhH
Q 022764 126 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 199 (292)
Q Consensus 126 ~lLK~fLr~Lp~PLi~~~~~~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~ 199 (292)
++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||++|+.+|.||+.||++|+.+++.|+|++.|||+
T Consensus 345 ~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi 424 (463)
T 3cxl_A 345 GALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI 424 (463)
T ss_dssp HHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 99999999999999999999999987 357899999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCh
Q 022764 200 EMAPVIMWQKERKP 213 (292)
Q Consensus 200 vf~P~Ll~~~~~~~ 213 (292)
||||+|+++++.++
T Consensus 425 vf~P~Ll~~~~~~~ 438 (463)
T 3cxl_A 425 VFGPTLMRSPELDA 438 (463)
T ss_dssp HHHHHHCCCCCSCT
T ss_pred HhhccccCCCCccH
Confidence 99999999987653
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=285.28 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=126.1
Q ss_pred CCCCccCCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHH
Q 022764 47 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 126 (292)
Q Consensus 47 ~~~~vFG~~L~~l~~~~~~~~~vP~~l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 126 (292)
...++||+||++++++...+..||.+|.+|+++|+++|+++|||||++|+. +++ .+...++ +..|+|++|+
T Consensus 18 ~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl-~~~dvh~va~ 88 (214)
T 2xs6_A 18 LYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDV-DQWDTAALAD 88 (214)
T ss_dssp -------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTG-GGCCHHHHHH
T ss_pred CCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCC-ccCCHHHHHH
Confidence 356799999999998644457899999999999999999999999999998 333 1222333 4589999999
Q ss_pred HHHHHHhhCCCCCCchhhhHHHHhHHH---HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 127 LAKYYLASLPEPLTTFELYDEIKGARS---SIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 127 lLK~fLr~Lp~PLi~~~~~~~~~~~~~---~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
+||.|||+||+||+|.++|+.|+++.. ..+.+..++.+||+.|+.+|+||+.||++|+.+++.|||++.|||+||||
T Consensus 89 lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 168 (214)
T 2xs6_A 89 GIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGP 168 (214)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhh
Confidence 999999999999999999999998743 11223378899999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 022764 204 VIMWQKERK 212 (292)
Q Consensus 204 ~Ll~~~~~~ 212 (292)
+|+|++.++
T Consensus 169 ~Ll~~~~~~ 177 (214)
T 2xs6_A 169 LLLRAPPPP 177 (214)
T ss_dssp HHHC-----
T ss_pred hhcCCcccc
Confidence 999998754
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=1.1e-36 Score=283.97 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=150.2
Q ss_pred CCCCCCccCCCHHHHHhhhc-------------------------------------CCCCCCHHHHHHHHHHHHcCCCC
Q 022764 45 GVASTDVFGVPIEVTVQRQQ-------------------------------------YGKPVPHILVKCADYLVLSGLNS 87 (292)
Q Consensus 45 ~~~~~~vFG~~L~~l~~~~~-------------------------------------~~~~vP~~l~~~i~~l~~~gl~~ 87 (292)
+...+++||+||++++...+ .+..||.+|.+|++||+++|+.+
T Consensus 138 ~~~~~s~FG~sl~~l~~~~~pir~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~iP~~v~~~i~~l~~~Gl~~ 217 (366)
T 3qis_A 138 GNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQ 217 (366)
T ss_dssp EEECCCSTTSCHHHHHHCCSCTTC---------------------------------CCCSSCHHHHHHHHHHHHHCTTC
T ss_pred cccCCccccCcHHHHHHhccchhhcChhhhhhccccchhhhcccccccccccccccCCCCCcChHHHHHHHHHHhcCCCC
Confidence 33468899999999986541 12389999999999999999999
Q ss_pred cCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcH
Q 022764 88 QFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSN 167 (292)
Q Consensus 88 eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~ 167 (292)
|||||++|+..+++.|++.+|.|....+. .|+|++|++||.|||+||+||+|.++|+.|+++....+.++.++.+||+
T Consensus 218 eGIFR~~G~~~~v~~L~~~~d~~~~~~~~--~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~~~~~~~ll~~LP~ 295 (366)
T 3qis_A 218 EDLFQTPGMQEELQQIIDCLDTSIPETIP--GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPR 295 (366)
T ss_dssp TTTTTSCCCHHHHHHHHHHHHHCCCSSCC--SCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred CCeEeCCCCHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhhHHHHHHHHHHCCH
Confidence 99999999999999999999998766542 4999999999999999999999999999999997767789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCChhhhhHhhccccccCCCCC
Q 022764 168 VNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 212 (292)
Q Consensus 168 ~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~vf~P~Ll~~~~~~ 212 (292)
.|+.+|.||+.||++|+.|++.|+||++|||+||||+|||++...
T Consensus 296 ~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~ 340 (366)
T 3qis_A 296 CHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL 340 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence 999999999999999999999999999999999999999998654
No 17
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=35.70 E-value=71 Score=27.32 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCCCCchhhhHHHHhHHHHHHHHHHHHhhhcHHHHHHHH
Q 022764 95 GDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLE 174 (292)
Q Consensus 95 g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~PLi~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~ 174 (292)
.+...+..+.+.|. ..++|++.|-..||.-=...++-.- .+....++-.-.|-........++.++...++.
T Consensus 18 ~d~~~i~~~v~~f~-------YqGFDa~~vi~~l~erg~~~g~~~~-~D~k~mIVl~ltRGNk~~km~~kms~~Gk~~~~ 89 (253)
T 4h5l_A 18 ADSGTINAWVNEFA-------YQGFDPKRIVQLVKERGTAKGRDWK-KDVKMMIVLNLVRGNKPEAMMKKMSEKGASIVA 89 (253)
T ss_dssp CCHHHHHHHHHHHS-------BCSSCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHCSCHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHhccchhhHH-HhHHHHhhhhhhcCCCHHHHHHHhCHHHHHHHH
Confidence 35567777777775 3567898888888764333322111 112111222234556778888999999999999
Q ss_pred HHHHHHHHHHhcccccCCChhhhhHhhcc
Q 022764 175 YVTALLLRVSQKSLLNKMDARSLAMEMAP 203 (292)
Q Consensus 175 ~L~~~L~~V~~~~~~NkMt~~nLa~vf~P 203 (292)
.|+.+.+-+..+...+..|+..+|.+|++
T Consensus 90 ~Li~~Y~Lk~~~~~r~~lTLsRVAa~fa~ 118 (253)
T 4h5l_A 90 NLISVYQLKEGNPGRDTITLSRVSAAFVP 118 (253)
T ss_dssp HHHHHHTBCSSSCCTTCBCHHHHHHHTHH
T ss_pred HHHHHhCcccCCCCcccccHHHHHHHhhH
Confidence 99999998888888888999999999986
No 18
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=27.13 E-value=58 Score=23.73 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 155 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 155 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
+..++.....|++..+.+..|++.+...+.. ||+..||.-
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~------~si~elA~~ 44 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVN------MTSQEIANQ 44 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTT------CCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHH------CCHHHHHHH
Confidence 4567778889999999999999999888766 778888863
No 19
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=26.97 E-value=2e+02 Score=22.51 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=74.7
Q ss_pred hhcHHHHHHHhhhcC--ccchhhHHHHhcCCCC-CCccCCCHHHHHhhhcCCCCCCHHHHHHH-------HHHHHcCCCC
Q 022764 18 KIKVEEAAKKTAQKS--KTILTDIERWQKGVAS-TDVFGVPIEVTVQRQQYGKPVPHILVKCA-------DYLVLSGLNS 87 (292)
Q Consensus 18 k~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~vFG~~L~~l~~~~~~~~~vP~~l~~~i-------~~l~~~gl~~ 87 (292)
...+++..-+.+++. .+....+-+-+.|+.+ ..+.|..+..+++..+....+|-=|..++ .+|+++--+.
T Consensus 30 ~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lrkHLe~n~kD~ 109 (151)
T 3u5c_N 30 SESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDK 109 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHccccH
Confidence 344444444445554 3445555555666654 56889999999998877789998777666 3477777788
Q ss_pred cCcccccCCHHHHHHHHHHHccCCCCC-CCCCCchhhhHHH
Q 022764 88 QFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAAL 127 (292)
Q Consensus 88 eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~l 127 (292)
..-||+.--.++|.+|...+-.....+ .| .|++.++..+
T Consensus 110 ~sK~~L~liESkI~RL~rYYk~~~~LP~~W-kY~~~tA~~l 149 (151)
T 3u5c_N 110 DAKFRLILIESRIHRLARYYRTVAVLPPNW-KYESATASAL 149 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCC-cCCHHHHHHH
Confidence 888999888899999999987655332 22 2677665544
No 20
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=26.28 E-value=75 Score=23.17 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHhcccccCCChhhhhHh
Q 022764 156 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 200 (292)
Q Consensus 156 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkMt~~nLa~v 200 (292)
..++.....|++..+.+..|++.+...+.. ||+..||.-
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~------~si~elA~~ 48 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE------STVNEISAL 48 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT------CCHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh------cCHHHHHHH
Confidence 456666778999999999999999888876 677777753
No 21
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=25.00 E-value=57 Score=22.55 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=34.5
Q ss_pred CcCcccccCCHHHHHHHHHHHccCCCCCCCCCCchhhhHHHHHHHHhhCCCC
Q 022764 87 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP 138 (292)
Q Consensus 87 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~Lp~P 138 (292)
.+|-|.++|... ++.+.+.++-. .+++..+..++++++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~---~l~~~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGATP-LEDVMRALNIH---TFPRDENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETTSB-HHHHHHHTTCC---CSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC---CCCcCCCCccHHHHHHHHhCCCCCC
Confidence 468899999754 66777777532 1222246889999999999999863
No 22
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=23.44 E-value=70 Score=22.27 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=34.2
Q ss_pred CcCcccccCCHHHHHHHHHHHccCCCCCCCCC-CchhhhHHHHHHHHhhCCCC
Q 022764 87 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG-VNPFDVAALAKYYLASLPEP 138 (292)
Q Consensus 87 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~-~d~~~va~lLK~fLr~Lp~P 138 (292)
.+|-|.+.|... +..+.+.++-. +++. .+..++++++-..|..+|..
T Consensus 13 ~dg~~~v~G~~~-l~dl~~~l~~~----l~~~~~~~~TlgG~i~~~lg~iP~~ 60 (90)
T 2p13_A 13 ADGTWLMDGWIS-IRKASNLLEHD----LVDEAERYSTLGGYLLWQFGYIPAA 60 (90)
T ss_dssp TTSCEEEETTSB-HHHHHHHHTSC----CCCTTCCCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECcCC-HHHHHHHHCCC----CCCcCCCCccHHHHHHHHhCCCCCC
Confidence 368899998754 66777777532 2221 46789999999999999863
No 23
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.26 E-value=51 Score=25.74 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHhhCCCCCCch
Q 022764 122 FDVAALAKYYLASLPEPLTTF 142 (292)
Q Consensus 122 ~~va~lLK~fLr~Lp~PLi~~ 142 (292)
+.+-.+++.||.-||+.-+|.
T Consensus 60 ~giL~~l~~WL~PLpDgsLP~ 80 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSMPN 80 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCCCC
T ss_pred cCHHHHHHHHhCcCCCCCCCC
Confidence 456789999999999987776
No 24
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=20.00 E-value=93 Score=21.35 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=34.2
Q ss_pred CcCcccccCCHHHHHHHHHHHccCCCCCCCC-C-CchhhhHHHHHHHHhhCCCC
Q 022764 87 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-G-VNPFDVAALAKYYLASLPEP 138 (292)
Q Consensus 87 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~-~d~~~va~lLK~fLr~Lp~P 138 (292)
.+|-|.++|... ++.+.+.++-.. +++ . .+..++++++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~~---l~~~~~~~~~Tl~G~i~~~lg~iP~~ 56 (86)
T 2pls_A 7 EDGSWLLDGLIA-VPELKDTLGLRA---VPEEEKGVYHTLSGMIMWLLGRLPQT 56 (86)
T ss_dssp TTSCEEEETTCB-HHHHHHHHTCSC---CTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred CCCeEEEEcccC-HHHHHHHhCCCc---CCCccCCCcccHHHHHHHHhCCCCCC
Confidence 368899998754 667777775420 222 1 46789999999999999863
Done!