Query 022765
Match_columns 292
No_of_seqs 160 out of 249
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1497 COP9 signalosome, subu 100.0 1.2E-76 2.6E-81 555.3 29.3 282 3-291 7-291 (399)
2 KOG1498 26S proteasome regulat 100.0 3.6E-45 7.7E-50 350.3 21.7 222 56-285 91-317 (439)
3 COG5071 RPN5 26S proteasome re 100.0 2.8E-35 6.1E-40 275.8 19.2 241 33-279 67-310 (439)
4 PF10602 RPN7: 26S proteasome 98.5 1.5E-06 3.3E-11 76.5 12.8 115 88-206 28-142 (177)
5 PF09976 TPR_21: Tetratricopep 95.9 0.078 1.7E-06 44.2 9.7 93 99-202 51-143 (145)
6 PF14938 SNAP: Soluble NSF att 95.8 0.31 6.6E-06 45.4 14.1 157 55-229 114-277 (282)
7 PF09976 TPR_21: Tetratricopep 95.7 0.96 2.1E-05 37.6 15.3 132 18-163 12-144 (145)
8 KOG2076 RNA polymerase III tra 95.2 2 4.3E-05 46.6 18.9 185 54-268 139-327 (895)
9 KOG0687 26S proteasome regulat 94.3 3.2 7E-05 40.8 16.4 173 47-237 62-235 (393)
10 COG5187 RPN7 26S proteasome re 94.2 1.1 2.3E-05 43.6 12.8 161 77-252 98-258 (412)
11 PF14938 SNAP: Soluble NSF att 94.2 1.7 3.8E-05 40.3 14.1 126 137-266 114-241 (282)
12 TIGR02795 tol_pal_ybgF tol-pal 93.5 0.66 1.4E-05 35.6 8.5 103 98-207 4-106 (119)
13 PF04348 LppC: LppC putative l 92.9 0.029 6.3E-07 57.6 0.0 107 93-206 21-127 (536)
14 cd00189 TPR Tetratricopeptide 92.9 1.8 4E-05 29.7 9.4 92 99-203 3-94 (100)
15 KOG1840 Kinesin light chain [C 92.7 4.8 0.0001 41.5 15.6 134 68-204 213-352 (508)
16 PF14559 TPR_19: Tetratricopep 92.7 0.28 6.1E-06 34.9 4.9 66 108-186 3-68 (68)
17 PF13424 TPR_12: Tetratricopep 92.6 1.1 2.3E-05 32.9 8.1 69 137-205 5-74 (78)
18 PF13424 TPR_12: Tetratricopep 91.7 0.41 9E-06 35.1 4.9 71 95-167 4-76 (78)
19 TIGR02521 type_IV_pilW type IV 91.4 7.4 0.00016 32.3 17.5 167 18-205 31-197 (234)
20 TIGR02521 type_IV_pilW type IV 90.6 6.4 0.00014 32.7 11.8 100 93-205 28-127 (234)
21 TIGR02552 LcrH_SycD type III s 90.0 5.8 0.00013 31.5 10.6 97 96-206 17-114 (135)
22 PF10345 Cohesin_load: Cohesin 89.8 1.7 3.6E-05 45.1 9.1 80 112-194 37-117 (608)
23 PRK11788 tetratricopeptide rep 89.8 18 0.00038 34.0 18.2 172 18-205 69-242 (389)
24 PF13432 TPR_16: Tetratricopep 89.6 1.2 2.5E-05 31.5 5.6 60 101-167 2-61 (65)
25 PF13414 TPR_11: TPR repeat; P 89.6 0.94 2E-05 32.3 5.1 62 97-165 4-66 (69)
26 COG3107 LppC Putative lipoprot 89.4 4.7 0.0001 41.9 11.5 106 92-205 59-164 (604)
27 TIGR03302 OM_YfiO outer membra 88.5 6.5 0.00014 34.6 10.8 112 90-206 27-144 (235)
28 KOG2908 26S proteasome regulat 88.0 30 0.00065 34.3 18.7 139 134-284 112-272 (380)
29 PRK11788 tetratricopeptide rep 87.9 24 0.00052 33.1 23.2 103 95-205 106-208 (389)
30 cd05804 StaR_like StaR_like; a 86.6 4 8.6E-05 38.0 8.7 100 97-205 115-214 (355)
31 PF04733 Coatomer_E: Coatomer 84.2 4.2 9E-05 38.6 7.6 158 97-285 103-263 (290)
32 PF12895 Apc3: Anaphase-promot 83.8 3.9 8.4E-05 30.5 5.9 81 109-201 2-82 (84)
33 cd05804 StaR_like StaR_like; a 83.7 37 0.0008 31.5 14.2 142 96-250 148-292 (355)
34 COG2956 Predicted N-acetylgluc 83.4 20 0.00043 35.5 11.8 71 98-170 143-213 (389)
35 PRK10370 formate-dependent nit 83.3 22 0.00047 31.5 11.4 99 96-207 73-174 (198)
36 TIGR02795 tol_pal_ybgF tol-pal 83.2 3.5 7.6E-05 31.5 5.6 69 96-169 39-108 (119)
37 PF13414 TPR_11: TPR repeat; P 82.8 8 0.00017 27.3 7.0 64 136-205 2-66 (69)
38 PF10345 Cohesin_load: Cohesin 82.7 37 0.00079 35.3 14.4 129 74-206 37-168 (608)
39 COG3071 HemY Uncharacterized e 82.4 43 0.00093 33.6 13.9 156 17-204 228-388 (400)
40 PRK10049 pgaA outer membrane p 81.6 79 0.0017 33.8 17.7 100 94-206 357-456 (765)
41 PF12895 Apc3: Anaphase-promot 81.5 2.6 5.7E-05 31.5 4.2 61 95-163 24-84 (84)
42 TIGR02917 PEP_TPR_lipo putativ 80.9 69 0.0015 32.6 18.8 101 92-206 121-222 (899)
43 PLN03218 maturation of RBCL 1; 80.8 1E+02 0.0023 34.7 19.9 97 100-205 546-642 (1060)
44 PRK11447 cellulose synthase su 79.9 23 0.0005 39.5 12.5 96 98-206 605-700 (1157)
45 PRK14574 hmsH outer membrane p 79.5 15 0.00033 40.0 10.6 97 97-207 103-199 (822)
46 PF13371 TPR_9: Tetratricopept 78.8 3.4 7.4E-05 29.6 3.9 61 102-169 1-61 (73)
47 PF13432 TPR_16: Tetratricopep 78.5 18 0.00039 25.3 7.6 59 142-206 2-60 (65)
48 cd00189 TPR Tetratricopeptide 78.4 7.1 0.00015 26.6 5.4 62 97-166 35-97 (100)
49 PRK11447 cellulose synthase su 78.2 16 0.00035 40.8 10.6 103 96-205 637-739 (1157)
50 TIGR02917 PEP_TPR_lipo putativ 77.7 86 0.0019 31.9 18.9 167 17-205 21-187 (899)
51 PRK10747 putative protoheme IX 77.7 55 0.0012 31.9 13.1 60 137-203 328-387 (398)
52 PRK02603 photosystem I assembl 77.6 21 0.00045 30.3 9.0 70 95-169 34-104 (172)
53 TIGR02552 LcrH_SycD type III s 77.5 13 0.00029 29.4 7.4 66 96-169 51-117 (135)
54 TIGR03302 OM_YfiO outer membra 76.8 23 0.00051 31.0 9.4 104 98-206 72-195 (235)
55 PF13181 TPR_8: Tetratricopept 76.8 4.6 9.9E-05 24.8 3.6 30 138-167 2-31 (34)
56 COG2956 Predicted N-acetylgluc 76.1 87 0.0019 31.1 14.1 98 54-163 36-133 (389)
57 KOG2076 RNA polymerase III tra 75.3 11 0.00023 41.2 7.9 73 91-169 409-481 (895)
58 PF12569 NARP1: NMDA receptor- 75.1 1.1E+02 0.0023 31.7 20.0 99 133-249 190-288 (517)
59 PRK09782 bacteriophage N4 rece 74.7 31 0.00068 38.4 11.5 97 94-207 40-138 (987)
60 PF12569 NARP1: NMDA receptor- 73.9 1.1E+02 0.0025 31.5 17.3 101 98-205 230-333 (517)
61 PLN03081 pentatricopeptide (PP 73.7 67 0.0014 33.6 13.2 92 100-206 466-557 (697)
62 PLN03077 Protein ECB2; Provisi 72.5 1.2E+02 0.0027 32.4 15.2 92 99-205 628-719 (857)
63 CHL00033 ycf3 photosystem I as 71.9 58 0.0013 27.3 11.2 71 93-168 32-103 (168)
64 PLN03218 maturation of RBCL 1; 71.8 1.8E+02 0.0039 32.9 19.0 21 102-122 620-640 (1060)
65 KOG1463 26S proteasome regulat 71.5 1.1E+02 0.0024 30.6 13.1 200 28-237 58-264 (411)
66 PF07064 RIC1: RIC1; InterPro 71.1 39 0.00086 31.7 9.8 126 35-164 116-247 (258)
67 PF13174 TPR_6: Tetratricopept 70.6 7.2 0.00016 23.4 3.3 31 139-169 2-32 (33)
68 PF00515 TPR_1: Tetratricopept 70.2 9.2 0.0002 23.5 3.8 31 137-167 1-31 (34)
69 COG2406 Protein distantly rela 69.5 11 0.00025 33.0 5.3 64 170-233 57-120 (172)
70 PF13176 TPR_7: Tetratricopept 69.4 5.1 0.00011 25.7 2.5 22 100-121 3-24 (36)
71 PF07719 TPR_2: Tetratricopept 68.8 10 0.00023 22.9 3.8 31 138-168 2-32 (34)
72 CHL00033 ycf3 photosystem I as 68.6 64 0.0014 27.0 9.9 88 111-206 14-101 (168)
73 KOG1840 Kinesin light chain [C 67.3 1.3E+02 0.0028 31.3 13.3 145 60-206 246-396 (508)
74 PRK10747 putative protoheme IX 67.2 1.2E+02 0.0026 29.5 12.7 57 106-168 128-184 (398)
75 PRK14720 transcript cleavage f 66.8 55 0.0012 36.3 11.0 139 90-252 25-163 (906)
76 KOG1585 Protein required for f 65.5 1.3E+02 0.0029 28.9 12.1 71 135-205 89-178 (308)
77 PF13429 TPR_15: Tetratricopep 65.3 19 0.0004 32.8 6.3 65 100-169 114-178 (280)
78 PF13428 TPR_14: Tetratricopep 65.3 7.1 0.00015 25.9 2.7 25 98-122 3-27 (44)
79 PRK10049 pgaA outer membrane p 65.0 2E+02 0.0043 30.8 17.4 103 98-206 312-422 (765)
80 smart00299 CLH Clathrin heavy 63.9 20 0.00043 29.2 5.7 111 22-163 11-122 (140)
81 PLN03088 SGT1, suppressor of 63.8 99 0.0021 29.9 11.3 83 96-188 36-119 (356)
82 PF13176 TPR_7: Tetratricopept 62.0 10 0.00022 24.3 2.8 28 140-167 2-29 (36)
83 PRK11189 lipoprotein NlpI; Pro 61.4 1.4E+02 0.003 27.8 11.9 100 93-206 61-161 (296)
84 PRK12798 chemotaxis protein; R 61.2 35 0.00076 34.5 7.7 72 130-206 250-321 (421)
85 PF03704 BTAD: Bacterial trans 60.4 42 0.0009 27.4 7.0 72 90-169 56-128 (146)
86 PF14559 TPR_19: Tetratricopep 59.7 56 0.0012 22.7 7.3 55 147-207 1-55 (68)
87 PF09295 ChAPs: ChAPs (Chs5p-A 59.6 1.4E+02 0.003 29.9 11.6 124 51-197 165-288 (395)
88 KOG3081 Vesicle coat complex C 58.9 94 0.002 30.0 9.8 129 97-252 109-238 (299)
89 PRK10803 tol-pal system protei 58.9 84 0.0018 29.4 9.5 90 108-206 155-246 (263)
90 TIGR00540 hemY_coli hemY prote 58.0 1.9E+02 0.0041 28.2 12.4 64 97-167 336-400 (409)
91 PLN03088 SGT1, suppressor of 57.6 1.2E+02 0.0026 29.3 10.7 91 102-206 8-99 (356)
92 PF13428 TPR_14: Tetratricopep 56.9 20 0.00042 23.7 3.7 32 138-169 2-33 (44)
93 KOG1155 Anaphase-promoting com 56.6 27 0.00058 36.1 6.0 67 98-166 468-536 (559)
94 KOG1586 Protein required for f 55.8 1.9E+02 0.0042 27.6 14.8 85 141-237 199-284 (288)
95 KOG1070 rRNA processing protei 55.7 24 0.00052 40.7 6.0 155 27-189 1450-1616(1710)
96 PF09295 ChAPs: ChAPs (Chs5p-A 54.4 1.3E+02 0.0028 30.1 10.5 90 96-201 169-258 (395)
97 PF07721 TPR_4: Tetratricopept 54.1 18 0.00039 21.5 2.9 24 97-120 2-25 (26)
98 PRK10370 formate-dependent nit 54.1 1.6E+02 0.0034 26.0 10.2 64 137-206 73-139 (198)
99 PF13371 TPR_9: Tetratricopept 53.5 77 0.0017 22.3 7.2 57 144-206 2-58 (73)
100 PRK14474 F0F1 ATP synthase sub 51.7 11 0.00024 35.1 2.4 91 38-130 130-229 (250)
101 PF02259 FAT: FAT domain; Int 51.0 2E+02 0.0044 26.4 19.2 148 55-205 105-286 (352)
102 PRK15359 type III secretion sy 50.8 1.4E+02 0.0031 24.7 10.1 92 101-206 29-121 (144)
103 PF13429 TPR_15: Tetratricopep 50.4 62 0.0013 29.4 7.1 95 100-207 82-176 (280)
104 KOG1524 WD40 repeat-containing 49.8 24 0.00053 36.9 4.6 68 132-199 629-716 (737)
105 TIGR00990 3a0801s09 mitochondr 49.5 3.1E+02 0.0067 28.2 19.7 102 96-205 467-570 (615)
106 PRK15174 Vi polysaccharide exp 48.7 3.5E+02 0.0075 28.5 20.6 98 96-206 284-381 (656)
107 PRK02603 photosystem I assembl 48.7 1.1E+02 0.0024 25.8 7.9 71 133-206 31-101 (172)
108 TIGR03504 FimV_Cterm FimV C-te 48.5 15 0.00032 25.5 2.0 25 99-123 2-26 (44)
109 KOG2002 TPR-containing nuclear 48.2 2.6E+02 0.0057 31.4 12.2 168 18-196 530-735 (1018)
110 PRK10803 tol-pal system protei 46.8 50 0.0011 30.9 5.9 70 97-170 181-250 (263)
111 smart00028 TPR Tetratricopepti 46.7 31 0.00067 18.6 3.0 29 138-166 2-30 (34)
112 KOG0543 FKBP-type peptidyl-pro 44.9 2.2E+02 0.0049 28.7 10.3 131 34-168 138-288 (397)
113 TIGR00990 3a0801s09 mitochondr 44.3 3.7E+02 0.0081 27.6 21.5 98 96-206 399-496 (615)
114 COG3629 DnrI DNA-binding trans 44.0 98 0.0021 29.6 7.5 72 90-169 140-219 (280)
115 KOG3617 WD40 and TPR repeat-co 39.8 4.1E+02 0.009 30.0 11.9 149 77-251 1124-1289(1416)
116 PF00244 14-3-3: 14-3-3 protei 39.3 1.6E+02 0.0035 27.0 8.0 79 181-270 5-85 (236)
117 KOG1129 TPR repeat-containing 39.1 1.9E+02 0.0042 29.0 8.7 97 96-206 223-319 (478)
118 PF13374 TPR_10: Tetratricopep 39.0 46 0.00099 20.6 3.2 26 96-121 2-27 (42)
119 KOG1464 COP9 signalosome, subu 38.7 1.4E+02 0.0031 29.3 7.6 172 101-290 150-332 (440)
120 PRK09782 bacteriophage N4 rece 38.1 3.5E+02 0.0076 30.3 11.6 62 138-205 610-671 (987)
121 TIGR00540 hemY_coli hemY prote 37.8 3.9E+02 0.0085 26.0 13.8 96 95-202 262-359 (409)
122 KOG2003 TPR repeat-containing 37.0 4.4E+02 0.0095 27.7 11.1 150 36-206 539-689 (840)
123 PF06069 PerC: PerC transcript 37.0 43 0.00092 26.9 3.3 48 98-150 2-49 (90)
124 PF11768 DUF3312: Protein of u 35.1 3.2E+02 0.0069 28.8 10.0 91 105-203 417-510 (545)
125 TIGR02561 HrpB1_HrpK type III 34.5 3.2E+02 0.007 24.0 9.3 87 74-168 29-124 (153)
126 PF12854 PPR_1: PPR repeat 34.1 49 0.0011 20.9 2.7 24 100-123 11-34 (34)
127 PLN03077 Protein ECB2; Provisi 33.6 6.3E+02 0.014 27.1 13.7 58 97-164 324-381 (857)
128 KOG2003 TPR repeat-containing 33.4 2.4E+02 0.0052 29.6 8.6 110 96-223 521-633 (840)
129 PF04049 APC8: Anaphase promot 31.3 2.2E+02 0.0048 24.2 7.0 48 138-195 76-123 (142)
130 KOG2300 Uncharacterized conser 31.2 6.2E+02 0.013 26.8 11.1 131 58-190 10-142 (629)
131 PLN03081 pentatricopeptide (PP 29.7 6.7E+02 0.014 26.2 15.1 53 100-162 364-416 (697)
132 PRK10866 outer membrane biogen 29.6 1.3E+02 0.0028 27.6 5.7 67 100-170 36-102 (243)
133 PRK12370 invasion protein regu 28.6 6.5E+02 0.014 25.7 12.9 171 96-284 338-520 (553)
134 PF02885 Glycos_trans_3N: Glyc 28.4 1.9E+02 0.004 21.1 5.3 41 21-61 2-44 (66)
135 PF09613 HrpB1_HrpK: Bacterial 28.2 2.7E+02 0.0058 24.6 7.1 48 73-127 28-75 (160)
136 KOG3091 Nuclear pore complex, 27.3 3.1E+02 0.0068 28.5 8.3 129 108-256 311-448 (508)
137 KOG2880 SMAD6 interacting prot 27.3 1.8E+02 0.0039 29.2 6.4 65 139-203 37-132 (424)
138 PF11873 DUF3393: Domain of un 27.1 16 0.00036 33.3 -0.7 72 217-290 105-177 (204)
139 PF11207 DUF2989: Protein of u 26.9 4.3E+02 0.0092 24.3 8.4 74 34-115 123-197 (203)
140 COG2256 MGS1 ATPase related to 26.6 4.3E+02 0.0094 27.0 9.0 172 65-253 160-355 (436)
141 COG3071 HemY Uncharacterized e 26.0 4.3E+02 0.0092 26.8 8.8 96 58-169 298-393 (400)
142 PF10799 YliH: Biofilm formati 25.7 3.3E+02 0.0072 23.0 6.8 62 156-236 23-90 (127)
143 PRK04841 transcriptional regul 25.7 8.3E+02 0.018 26.0 11.9 130 69-202 467-598 (903)
144 PF14904 FAM86: Family of unkn 25.4 68 0.0015 26.3 2.7 38 239-276 45-82 (100)
145 COG5481 Uncharacterized conser 24.7 1.1E+02 0.0023 23.0 3.3 31 95-125 6-36 (67)
146 cd00280 TRFH Telomeric Repeat 24.6 5.4E+02 0.012 23.6 8.5 68 74-143 85-156 (200)
147 COG1849 Uncharacterized protei 24.0 95 0.0021 25.0 3.2 30 136-165 40-69 (90)
148 KOG3616 Selective LIM binding 23.9 87 0.0019 34.6 3.8 61 104-180 1055-1115(1636)
149 PF04010 DUF357: Protein of un 23.6 83 0.0018 24.1 2.7 27 135-161 33-59 (75)
150 PRK15174 Vi polysaccharide exp 23.4 8.8E+02 0.019 25.5 18.2 97 96-206 246-347 (656)
151 COG4105 ComL DNA uptake lipopr 23.2 6.5E+02 0.014 23.9 11.3 116 107-231 45-216 (254)
152 smart00299 CLH Clathrin heavy 23.0 1.9E+02 0.0042 23.2 5.1 24 98-121 84-107 (140)
153 PHA01735 hypothetical protein 23.0 1.6E+02 0.0035 22.7 4.1 53 23-75 20-74 (76)
154 KOG2581 26S proteasome regulat 22.4 8.7E+02 0.019 25.1 18.0 171 93-284 166-340 (493)
155 PF10255 Paf67: RNA polymerase 22.4 7.6E+02 0.016 24.9 9.9 66 168-237 157-231 (404)
156 PF12862 Apc5: Anaphase-promot 22.3 2.9E+02 0.0063 21.2 5.7 79 108-187 10-91 (94)
157 PF13525 YfiO: Outer membrane 21.3 5.5E+02 0.012 22.4 12.4 68 100-171 9-76 (203)
158 PF15469 Sec5: Exocyst complex 21.0 2.8E+02 0.0062 23.9 6.0 50 142-191 91-142 (182)
159 KOG2034 Vacuolar sorting prote 20.7 2.1E+02 0.0046 31.7 6.0 54 143-205 364-417 (911)
160 PF09670 Cas_Cas02710: CRISPR- 20.2 5.2E+02 0.011 25.4 8.2 119 77-205 116-269 (379)
161 PF04184 ST7: ST7 protein; In 20.1 2E+02 0.0043 30.1 5.4 64 96-164 259-322 (539)
162 PRK00056 mtgA monofunctional b 20.0 65 0.0014 30.0 1.8 50 94-146 111-163 (236)
No 1
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-76 Score=555.33 Aligned_cols=282 Identities=54% Similarity=0.859 Sum_probs=273.1
Q ss_pred HHHHhhhcccchhHhHHHHHHHHHHhhcCC--C-HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHH
Q 022765 3 SALASASAITDQRQKIEQYKHILSSVISSN--D-IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANY 79 (292)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~y~~ll~~i~~~~--~-~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~ 79 (292)
..+.-+-+.||||++.++|+.+|+..++++ + .+.+|.||+++++++|++|+|||+++.|...|+.+|++.+|++.++
T Consensus 7 eev~~~~~~g~hk~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~ 86 (399)
T KOG1497|consen 7 EEVVLIFAEGDHKDQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHF 86 (399)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344556677899999999999999999877 4 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHH
Q 022765 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAF 159 (292)
Q Consensus 80 ~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~ 159 (292)
+|..|+||.||||||++.+|.+||.|||++|+|+.||++|.+||+|||++.++.+.|+..|+||+||||++||.++||+|
T Consensus 87 ~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~ 166 (399)
T KOG1497|consen 87 TLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY 166 (399)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 022765 160 INKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGP 239 (292)
Q Consensus 160 ~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApagp 239 (292)
+||+|.++.+.+|++|++.||+|+||++|.+|+|+|||+|||++|++ ..+|+.+++++|++|++|++||.|||
T Consensus 167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~-------ki~~e~~~~~aL~~a~~CtlLA~~gp 239 (399)
T KOG1497|consen 167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR-------KIVDESERLEALKKALQCTLLASAGP 239 (399)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchHHHHHHHHHhHhheeecCCCh
Confidence 99999999988999999999999999999999999999999999997 55899999999999999999999999
Q ss_pred hHHHHHHHHhccccccCCCchhHHHHHHHhhhcChhHHHHHHhhcCCccccc
Q 022765 240 QRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQVIN 291 (292)
Q Consensus 240 ~RSrlL~~L~kDer~~~Lp~y~iL~Kmf~~rii~~~ev~~F~~~L~pHQ~a~ 291 (292)
+|||||++|||||||+++|.|++|+|||++|||+++|+++|++.|+|||+|.
T Consensus 240 qrsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~ 291 (399)
T KOG1497|consen 240 QRSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAH 291 (399)
T ss_pred HHHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhc
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=350.33 Aligned_cols=222 Identities=20% Similarity=0.249 Sum_probs=209.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHH
Q 022765 56 QLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF 135 (292)
Q Consensus 56 ~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~e 135 (292)
.++.+.+.+++++|+...+...+.||+.||+|+||+|.|||+||..||+|+|.+||+++||++|+++||||| |+|+..|
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETy-gsm~~~e 169 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETY-GSMEKSE 169 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhh-hhhHHHH
Confidence 466777888999999999999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC-chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCC
Q 022765 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDE 214 (292)
Q Consensus 136 Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~-~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~ 214 (292)
|++|+|+||||||-.+||++|.++++||+.++|+. +.++||++||.+|+|+.-|.+.||++|++|+++|.+ |
T Consensus 170 kV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t-------~ 242 (439)
T KOG1498|consen 170 KVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT-------G 242 (439)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc-------c
Confidence 99999999999999999999999999999999975 568999999999999999999999999999999998 4
Q ss_pred CC--CHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccccccCCCchhHHHHHHHhh-hcChh-HHHHHHhhcC
Q 022765 215 TI--DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLER-ILRKP-EIDAFAEELK 285 (292)
Q Consensus 215 ~i--de~e~~~~L~~Av~caILApagp~RSrlL~~L~kDer~~~Lp~y~iL~Kmf~~r-ii~~~-ev~~F~~~L~ 285 (292)
.| |+++|...|.++|.+++|||++|+||+++|++..|..+.++|.|+.|.|.|+.+ +++|+ -.+.|...|.
T Consensus 243 ~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~ 317 (439)
T KOG1498|consen 243 NVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELR 317 (439)
T ss_pred ccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHh
Confidence 45 999999999999999999999999999999999999999999999999999555 99997 6666666554
No 3
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=275.82 Aligned_cols=241 Identities=16% Similarity=0.202 Sum_probs=212.7
Q ss_pred CHHHHHHHHHHHhcCCcch-hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhcc
Q 022765 33 DIVQAKKFIDHMLSDDVPL-VVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQ 111 (292)
Q Consensus 33 ~~~~l~~~i~~~~~~~v~l-v~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~ 111 (292)
+-++|..-+..++...-.+ ..-..++..+..+++...+-..+.-.+.||+.+++|+|++|.||+++|+.|..++|.+||
T Consensus 67 ~~~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvERariT~~L~~ikee~Gd 146 (439)
T COG5071 67 DFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGD 146 (439)
T ss_pred chhhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCceEEehhHHHHHHHHHHHHHHhcc
Confidence 4455655555554322211 122345666667777776656788889999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC-chHHHHHHHHHHHHHHHHHh
Q 022765 112 WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLK 190 (292)
Q Consensus 112 ~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~-~~~~LkL~y~~~~ari~d~~ 190 (292)
+++|+++|+..||||+ |+|+..+|+.|+|+|+|||+-.+||.+|.++.+|+..++|+. +-+.+|++||.+..+|.-|+
T Consensus 147 i~sA~Dilcn~pVETy-gs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~ 225 (439)
T COG5071 147 IKSAQDILCNEPVETY-GSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHD 225 (439)
T ss_pred hhHHHHHHhcCchhhc-cchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeeccc
Confidence 9999999999999997 699999999999999999999999999999999999999975 66899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccccccCCCchhHHHHHH-Hh
Q 022765 191 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY-LE 269 (292)
Q Consensus 191 rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~kDer~~~Lp~y~iL~Kmf-~~ 269 (292)
|+|+++|+.|+++|+|.. ..-|+..|...|++.+.++||+|+|+++.++++.+..|-++.++|.-..|.|+| ++
T Consensus 226 R~Yl~v~~y~~~vY~t~~-----~~~d~Akwk~VLS~~v~F~iLtpy~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vN 300 (439)
T COG5071 226 RAYLDVCKYYRAVYDTAV-----VQEDPAKWKEVLSNVVCFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVN 300 (439)
T ss_pred HHHHHHHHHHHHHHHHHH-----hccCcccccchhhcceeeEEecccccHHHHHHHHhhhhhhhccchhhhhHHHHHHHH
Confidence 999999999999999843 344999999999999999999999999999999999999999999999999999 78
Q ss_pred hhcChhHHHH
Q 022765 270 RILRKPEIDA 279 (292)
Q Consensus 270 rii~~~ev~~ 279 (292)
+++||+-|++
T Consensus 301 elmrwp~V~~ 310 (439)
T COG5071 301 ELMRWPKVAE 310 (439)
T ss_pred HHHhhhHHHH
Confidence 8999988765
No 4
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.54 E-value=1.5e-06 Score=76.53 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=105.4
Q ss_pred ccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 88 VVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 88 ~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
.-..++++.+....||+-|.+-||+.+|.+......= ...+...|+++++.++|+++.-+||..+..|++|+...+
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~----~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARD----YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4467888888899999999999999999999998432 245788999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 168 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 168 ~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
....|++.+.+++.+.+-.....|+|-+||+.|.++..+
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 888899999999999999999999999999999999775
No 5
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.93 E-value=0.078 Score=44.19 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHH
Q 022765 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (292)
Q Consensus 99 r~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~ 178 (292)
+..||+++-..|++.+|...|..+--.+ -++..+--..++.+++++..|++..|...++++ .++...-.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~ 119 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHH
Confidence 5669999999999999999999975433 244567778899999999999999999999763 23334555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 022765 179 YKVCYARILDLKRKFLEAALRYYD 202 (292)
Q Consensus 179 y~~~~ari~d~~rkFLeAa~~Y~e 202 (292)
+..+.+.|+-..+++=+|-..|..
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788899999999999999888864
No 6
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.81 E-value=0.31 Score=45.38 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCC---CCCCCc
Q 022765 55 RQLLQTFAQELGRL--EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID---LDSGMR 129 (292)
Q Consensus 55 R~~l~~~~~~l~~l--~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~---vEt~~~ 129 (292)
-.++..+...+.+. ..+...+.-..+++...... -......+...+|.++-..|+|.+|.+++..+- +++.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-- 189 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-- 189 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc--
Confidence 34566777777776 55666777777777654322 345567888899999999999999999998752 2221
Q ss_pred cCChHHHH-HHHHHHHHHHhccCchhhHHHHHhhhhhhccc-CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 130 VIDDTFRL-SKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 130 ~~~~~eKl-~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~-~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
. ..+.+ +++++.+=++|-.||++.|+..+++....... .+..+-++-....-|-=.--...|-++.+.|-.|+..
T Consensus 190 -l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l- 266 (282)
T PF14938_consen 190 -L-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL- 266 (282)
T ss_dssp -T-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred -c-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc-
Confidence 1 12333 47899999999999999999999998877643 2345656555555554444556899999999888875
Q ss_pred hhhcCCCCCCHHHHHHHHHHHH
Q 022765 208 KRQIGDETIDEEALEQALSAAV 229 (292)
Q Consensus 208 ~~~~~~~~ide~e~~~~L~~Av 229 (292)
+.|+..+-.-|
T Consensus 267 -----------d~w~~~~l~~~ 277 (282)
T PF14938_consen 267 -----------DNWKTKMLLKI 277 (282)
T ss_dssp ------------HHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH
Confidence 66776655444
No 7
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.68 E-value=0.96 Score=37.56 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcch-hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHH
Q 022765 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPL-VVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (292)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~l-v~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a 96 (292)
...|..++..+ ..++...+...++.+..+.-+. -....-|.---..+..-.-+..+.....++..- +.. .=..
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~----~l~~ 85 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDP----ELKP 85 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCH----HHHH
Confidence 45688777776 3556666666666666544433 222222222222234444455566666666543 111 1124
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhh
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~ 163 (292)
..+..||.++..+|++.+|-..|..++-++ .+-.++.-....|+..||+..|.....++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEA--------FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 446679999999999999999998754222 34557778999999999999999988775
No 8
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.17 E-value=2 Score=46.60 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCCh
Q 022765 54 SRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 133 (292)
Q Consensus 54 sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~ 133 (292)
-|++|+.-....-.-+.+....++.++++..-.-.+.| ..||.|||..||..+|-..+--. -.+.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay--------~tL~~IyEqrGd~eK~l~~~llA------AHL~p 204 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAY--------YTLGEIYEQRGDIEKALNFWLLA------AHLNP 204 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhH--------HHHHHHHHHcccHHHHHHHHHHH------HhcCC
Confidence 45666655555444567778888888888765554444 57999999999999998764331 12344
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCC
Q 022765 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGD 213 (292)
Q Consensus 134 ~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~ 213 (292)
..+ ++|.+-+.+..+-|.+.+|..+.+||...-.. +.++..+ -+-+++--++.=.|...|..+... .
T Consensus 205 ~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~--n~~~~~e----rs~L~~~~G~~~~Am~~f~~l~~~------~ 271 (895)
T KOG2076|consen 205 KDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPS--NWELIYE----RSSLYQKTGDLKRAMETFLQLLQL------D 271 (895)
T ss_pred CCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc--chHHHHH----HHHHHHHhChHHHHHHHHHHHHhh------C
Confidence 455 89999999999999999999999999776543 3333333 344556667777899999999986 3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhc----cccccCCCchhHHHHHHH
Q 022765 214 ETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK----DERCSKLKIYPILQKVYL 268 (292)
Q Consensus 214 ~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~k----Der~~~Lp~y~iL~Kmf~ 268 (292)
|.+|-+.-......++.+=+=. +.|.+.+..|.. ..-...+|.+.++.-+|+
T Consensus 272 p~~d~er~~d~i~~~~~~~~~~---~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 272 PPVDIERIEDLIRRVAHYFITH---NERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred CchhHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 5445443333444444444432 445776666543 334457899999888885
No 9
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=3.2 Score=40.79 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=124.7
Q ss_pred CCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCC
Q 022765 47 DDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS 126 (292)
Q Consensus 47 ~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt 126 (292)
++..+.+-+.+|..+++. +.+..+ -....++.-.+. -=|.++...-...|+-|..=||-..|-+.+.. |
T Consensus 62 e~~~i~~D~~~l~~m~~~----neeki~-eld~~iedaeen--lGE~ev~ea~~~kaeYycqigDkena~~~~~~----t 130 (393)
T KOG0687|consen 62 ESLVIKLDQDLLNSMKKA----NEEKIK-ELDEKIEDAEEN--LGESEVREAMLRKAEYYCQIGDKENALEALRK----T 130 (393)
T ss_pred hhcceeccHHHHHHHHHh----hHHHHH-HHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHH----H
Confidence 355567777777766643 111111 112222222221 12556666667789999999999988888775 5
Q ss_pred CCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 127 GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 127 ~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+.+.|+-..|+++..-.+|+=|=-.|..--...+-|++.++.+-.|++=+.+||..++=+.-+.|+|=+||.-+.+.--|
T Consensus 131 ~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 131 YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 55678888899999999999888888888889999999999988999999999999999999999999999999987554
Q ss_pred hhhhcCCCCC-CHHHHHHHHHHHHHHHhcCCC
Q 022765 207 QKRQIGDETI-DEEALEQALSAAVTCTILAAA 237 (292)
Q Consensus 207 ~~~~~~~~~i-de~e~~~~L~~Av~caILApa 237 (292)
=. |-.+ += -....-+|+|.+++-.
T Consensus 211 Ft----S~El~~Y---~~~v~Ytv~~g~i~le 235 (393)
T KOG0687|consen 211 FT----SYELMSY---ETFVRYTVITGLIALE 235 (393)
T ss_pred cc----ceecccH---HHHHHHHHHHhhheec
Confidence 11 2222 32 2466777777777653
No 10
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.1 Score=43.65 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=118.3
Q ss_pred HHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhH
Q 022765 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 156 (292)
Q Consensus 77 ~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~A 156 (292)
..+.++..++-. =|.+.+..-..+|+-|..-+|..-+-+.+.. +..+.|+-.-|+++.+-++||-+=-+|----
T Consensus 98 lde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~----~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 98 LDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRR----LMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 344455444433 4677788888899999999999888887765 2234566667999999999999999998888
Q ss_pred HHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCC
Q 022765 157 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAA 236 (292)
Q Consensus 157 e~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILAp 236 (292)
+.-+.++..++.+-.|++=+.+||..+.-..-.+|+|=+||.-..++.-|-. +..+-+ .-.+.+-|++|..+.
T Consensus 172 ~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~----S~El~s--Y~~~vrYa~~~Gl~~- 244 (412)
T COG5187 172 EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE----SSELIS--YSRAVRYAIFCGLLR- 244 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc----cccccc--HHHHHHHHHHhhhhe-
Confidence 9999999999988889999999999999999999999999999888865411 122211 113455555555543
Q ss_pred CCchHHHHHHHHhccc
Q 022765 237 AGPQRSRVLATLYKDE 252 (292)
Q Consensus 237 agp~RSrlL~~L~kDe 252 (292)
-+|.++=.++-+-+
T Consensus 245 --leR~diktki~dsp 258 (412)
T COG5187 245 --LERRDIKTKILDSP 258 (412)
T ss_pred --eehhhhhhhhcCCH
Confidence 35655555555443
No 11
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.15 E-value=1.7 Score=40.33 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcc-CchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCC
Q 022765 137 LSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET 215 (292)
Q Consensus 137 l~~~l~i~rL~Le~-~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ 215 (292)
.+.+.+++++|-+. +|+..|-.+..+|..++...+.+..-...+.-.|.+.-...+|-+|...|.++-.... ..+.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l---~~~l 190 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL---ENNL 190 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC---CHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh---cccc
Confidence 44566778888888 8999999999999999877667777788888899999999999999999999876310 1122
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHh-ccccccCCCchhHHHHH
Q 022765 216 IDEEALEQALSAAVTCTILAAAGPQRSRVLATLY-KDERCSKLKIYPILQKV 266 (292)
Q Consensus 216 ide~e~~~~L~~Av~caILApagp~RSrlL~~L~-kDer~~~Lp~y~iL~Km 266 (292)
..-.- ...+-+|++|-+...-...=.+.+.+.. .|++...-.++..+..+
T Consensus 191 ~~~~~-~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 191 LKYSA-KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp TGHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred cchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 22232 2345556667666543233334444443 46677776677666554
No 12
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.46 E-value=0.66 Score=35.61 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHH
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL 177 (292)
....++..+...|++.+|.+.+..+--... +.......+...++.+++.+++..|..+++++.....+.. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 346788899999999999999987632211 1122355778899999999999999999999987764321 112
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 178 QYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 178 ~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
.....+++++...+++-+|.+.|.++....
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 335566777788899999999998888753
No 13
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=92.93 E-value=0.029 Score=57.55 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCch
Q 022765 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (292)
Q Consensus 93 ~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~ 172 (292)
+++..++..-|+.+-.+|+|..|..+|..|+.. .+++..+.+..+=.+++.+..+++.+|-..++....... .
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~----~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l---~ 93 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ----QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQL---P 93 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc----cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccC---C
Confidence 677788888899999999999999999998743 467889999999999999999999999999987333222 3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 173 ~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
.....+|+...|+++...++.++|++.+-.++..
T Consensus 94 ~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 94 PEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 5778999999999999999999999999998774
No 14
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.86 E-value=1.8 Score=29.67 Aligned_cols=92 Identities=16% Similarity=0.020 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHH
Q 022765 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (292)
Q Consensus 99 r~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~ 178 (292)
...+|.++...|++.+|.+.+..+--... ... ..+...+..|...+++..|..+++++....... . .
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~ 69 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-----DNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--A----K 69 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h----h
Confidence 34678888999999999999876421111 111 678889999999999999999999987765432 2 3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 022765 179 YKVCYARILDLKRKFLEAALRYYDI 203 (292)
Q Consensus 179 y~~~~ari~d~~rkFLeAa~~Y~el 203 (292)
.....+.++-..+++-+|...+...
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555556655555544444
No 15
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.75 E-value=4.8 Score=41.46 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHH
Q 022765 68 LEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIA 144 (292)
Q Consensus 68 l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~---I~vEt~~~~~~~~eKl~~~l~i~ 144 (292)
..-+.....+..+|+.+..++-.-.--++.....+|..|-..+++.+|+.++.+ |.-+++ |.+.+. =..++...+
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-G~~h~~-va~~l~nLa 290 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-GEDHPA-VAATLNNLA 290 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-CCCCHH-HHHHHHHHH
Confidence 345667888899999987777766667778888899999999999999999875 444553 444443 477899999
Q ss_pred HHHhccCchhhHHHHHhhhhhhccc---CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 022765 145 RLYLEDDDAVNAEAFINKASFLVSS---SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (292)
Q Consensus 145 rL~Le~~D~~~Ae~~~nK~s~~~~~---~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els 204 (292)
-+|...|++..|+.|+.+|..+... ...+++.-.+. ..+-+.-++.+|=+|..-|....
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS-ELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH-HHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999999999999998865 34455544443 34456677778877777766443
No 16
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.69 E-value=0.28 Score=34.89 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=48.8
Q ss_pred hhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHH
Q 022765 108 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARI 186 (292)
Q Consensus 108 ~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari 186 (292)
++|+|.+|.+.+..+--.. + .-.++++..+++|++.|++.+|+.+++++.....+ .-.|+..+|+|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~------p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN------P-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD------NPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT------T-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT------HHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------HHHHHHHHhcC
Confidence 6799999999999862111 1 24568889999999999999999999999877654 13455555554
No 17
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.56 E-value=1.1 Score=32.87 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 137 l~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~-~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
...|-.++..|.+.|++.+|..+.+|+..+..... +.......+..++.++...++|=+|-..|.+-..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999999943333 3334588899999999999998888877766544
No 18
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.67 E-value=0.41 Score=35.11 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhcc-CCC-CCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSG-IDL-DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~-I~v-Et~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
.+.+-..+|.+|...|+|.+|-+.+.. +++ ++. |. +...-+..+..++.+|...||+.+|..+.+|+..+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456678899999999999999988764 222 121 11 223468999999999999999999999999987653
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.39 E-value=7.4 Score=32.34 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHH
Q 022765 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 97 (292)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~ 97 (292)
...|..+-......++.+.....++..+...-........+..+..... ..+........++..- |. ...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~-~~-------~~~ 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTLN-PN-------NGD 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC-CC-------CHH
Confidence 4456666666666667755555555554333222222222222222221 2344455555555532 21 124
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHH
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL 177 (292)
....++.++...|++.+|.+.+...--.. ........+...+..|.+.|++..|..+++++....... .
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~---- 169 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--P---- 169 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--h----
Confidence 56778999999999999999888752111 011234567778999999999999999999988765432 1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 178 ~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
..+..+++++-..++|-+|...|.+...
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344678888888888877776666555
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.61 E-value=6.4 Score=32.75 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCch
Q 022765 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (292)
Q Consensus 93 ~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~ 172 (292)
...+.....++..+...|++.+|.+.+...- +.. ......+...+.+|...||+..|..+.+++...... +
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~ 98 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKAL-EHD------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--N 98 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C
Confidence 3456677788888888889888888776531 110 112457777888888888888888888888765432 2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 173 ~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
.. .+...+.++-..++|-+|-..|.....
T Consensus 99 ~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 99 GD----VLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HH----HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 21 233445555566666666666666544
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.01 E-value=5.8 Score=31.55 Aligned_cols=97 Identities=13% Similarity=-0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~ 174 (292)
......++..+-..|++.+|...+..+ +.++. -...|...+.+|+..+++.+|..+++++.....+ +.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~ 86 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD--DPR 86 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ChH
Confidence 344567888899999999999998774 22221 2468889999999999999999999988766432 222
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 175 LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
++...+.++...++|-+|.+.|......
T Consensus 87 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 87 ----PYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334566777788999999988888775
No 22
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.84 E-value=1.7 Score=45.14 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=64.8
Q ss_pred HHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHh-ccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHh
Q 022765 112 WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190 (292)
Q Consensus 112 ~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~L-e~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~ 190 (292)
+.-|-++|..+=- +..++++..+.+++|++++++ |.+++..||.|++|+..+.....-.++|..-..+.+|++--+
T Consensus 37 I~~ai~CL~~~~~---~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLK---QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence 3455566655422 357999999999999999999 889999999999999998877666788888888889998766
Q ss_pred hHHH
Q 022765 191 RKFL 194 (292)
Q Consensus 191 rkFL 194 (292)
+...
T Consensus 114 ~~~~ 117 (608)
T PF10345_consen 114 NPKA 117 (608)
T ss_pred CHHH
Confidence 6554
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.79 E-value=18 Score=34.03 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCcccchhHhH
Q 022765 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQV 95 (292)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v-~lv~sR~~l~~~~~~l~~l-~~~~~~~~~~~~L~~i~~~~i~~E~q~ 95 (292)
.+.|..+..-....++.+.-..+.+.++.... +-......+..+...+... ..+........+++. . ...
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~-------~~~ 140 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-G-------DFA 140 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-C-------cch
Confidence 44555555555566666555555566554321 1111112333333333222 223333333333332 1 112
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
......|+.++...|+|.+|.+.+..+.-.. . .-.......+|...++.+++.+++..|..+.+++.....+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----- 213 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLG-G-DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC----- 213 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----
Confidence 3445667778888888888877776642211 1 11112344566777777888888888888888776543221
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
..-+...++++...++|-+|-..|.++..
T Consensus 214 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 214 -VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11233456666666666666666665554
No 24
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.60 E-value=1.2 Score=31.54 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=46.6
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 101 ~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
.+|..+...|+|.+|.+.+..+--.. + .-.+.|...+++++..|++..|..+..++....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------P-DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------T-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 47888899999999999998862222 1 256788889999999999999999998886554
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.58 E-value=0.94 Score=32.27 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccC-chhhHHHHHhhhhh
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD-DAVNAEAFINKASF 165 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~-D~~~Ae~~~nK~s~ 165 (292)
..-..+|.++...|+|.+|...+... -.++++ -...|..++..|.+.+ ++.+|..+.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~a------i~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKA------IELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH------HHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 33445556666666666665555431 111111 1335666666666665 56666666655543
No 26
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=89.35 E-value=4.7 Score=41.86 Aligned_cols=106 Identities=20% Similarity=0.075 Sum_probs=92.5
Q ss_pred hHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc
Q 022765 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (292)
Q Consensus 92 E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~ 171 (292)
++|....+..=|+..-.||+...|+.+|..+|+ .++|..|++.-+=-+++.+..+++..|..++.+..+--.. .
T Consensus 59 ~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-----~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls-~ 132 (604)
T COG3107 59 GEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-----ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLS-Q 132 (604)
T ss_pred chhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcC-H
Confidence 377788888889999999999999999999987 3689999999999999999999999999999988765432 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 172 ~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
--+.+|+...|.++..+.+=+++++..-....
T Consensus 133 --~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~ 164 (604)
T COG3107 133 --NQQARYYQARADALEARGDSIDAARARIAQDP 164 (604)
T ss_pred --HHHHHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 24899999999999999999999998776655
No 27
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=88.51 E-value=6.5 Score=34.57 Aligned_cols=112 Identities=12% Similarity=0.013 Sum_probs=78.1
Q ss_pred chhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 90 ~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
+..++.+.....++..+...|+|.+|...+..+--... +...-.+.+...+..|...+++..|..+.+++.....+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP----FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 67788888999999999999999999999987622221 11133457888899999999999999999999988765
Q ss_pred CchHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHhh
Q 022765 170 SQQEVLNLQYKVCYARILD------LKRKFLEAALRYYDISQI 206 (292)
Q Consensus 170 ~~~~~LkL~y~~~~ari~d------~~rkFLeAa~~Y~els~~ 206 (292)
...-. ...|..-.+.... ..+++-+|-..|..+...
T Consensus 103 ~~~~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDAD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCchH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 32211 1223333332221 235677777777777664
No 28
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=30 Score=34.31 Aligned_cols=139 Identities=18% Similarity=0.222 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc-Cc-hHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhhhh
Q 022765 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQ-QEVLNLQYKVCYARILDLKRKFLEA---ALRYYDISQIQK 208 (292)
Q Consensus 134 ~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~-~~-~~~LkL~y~~~~ari~d~~rkFLeA---a~~Y~els~~~~ 208 (292)
+.=..+-+.|+|++|+.+|-..++..+-........ .+ ++-..-.||..-..++-.+++|-+. |.+|...++.
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~-- 189 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDI-- 189 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccc--
Confidence 345567789999999999999999998888776643 22 2336677888888888888887654 4445555542
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHhccccccCCCchhHHHHHHHhhh
Q 022765 209 RQIGDETIDEEALEQALSAAVTCTILAAA-----------------GPQRSRVLATLYKDERCSKLKIYPILQKVYLERI 271 (292)
Q Consensus 209 ~~~~~~~ide~e~~~~L~~Av~caILApa-----------------gp~RSrlL~~L~kDer~~~Lp~y~iL~Kmf~~ri 271 (292)
..+.+++|.+.----..+|+|+.. | .+-|-|.-+..-=+...++.|..|.+.|..
T Consensus 190 -----~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~g-T~~eWL~dll~Afn~Gdl~~f~~l~~~~~~-- 261 (380)
T KOG2908|consen 190 -----DDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKG-TNREWLKDLLIAFNSGDLKRFESLKGVWGK-- 261 (380)
T ss_pred -----cccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcC-CcHHHHHHHHHHhccCCHHHHHHHHHHhcc--
Confidence 445677776655555566776651 3 334445555555566777777777777765
Q ss_pred cChhHHHHHHhhc
Q 022765 272 LRKPEIDAFAEEL 284 (292)
Q Consensus 272 i~~~ev~~F~~~L 284 (292)
+|.+.+-+..|
T Consensus 262 --~p~L~~~e~~L 272 (380)
T KOG2908|consen 262 --QPDLASNEDFL 272 (380)
T ss_pred --CchHHHHHHHH
Confidence 55555555544
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.86 E-value=24 Score=33.13 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHH
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~ 174 (292)
.......|+.+|...|++.+|.+++....-.. ......+...+.+|...|++.+|....+++....... +..
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 177 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRV 177 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chH
Confidence 34456777888888888888887777642111 1224567777888888888888888888776655433 222
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 175 LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
....|+..+++++-..+++-+|...|.+...
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2344556667776667777777666666544
No 30
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=86.63 E-value=4 Score=37.98 Aligned_cols=100 Identities=12% Similarity=-0.037 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHH
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~Lk 176 (292)
.....++.+++..|++.+|.+.+... ....++. ...+...+..|.+.|++..|..++.++...... ++...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~a------l~~~p~~-~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~ 185 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRA------LELNPDD-AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLR 185 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccchh
Confidence 44557888899999999988877652 1112222 456777788899999999999999988776543 34556
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 177 L~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
.+.+...|+++-..+++=+|-..|.+...
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 67777889999999999888888887643
No 31
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=84.22 E-value=4.2 Score=38.56 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHH
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~Lk 176 (292)
.++-..|.++-.+|++.+|-++|.+. ..+|...=.+.+||..+.+.-|+..+++... .+++.+-
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD~~l 166 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDEDSIL 166 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcHHH
Confidence 45667789999999999999998762 2245666677889999999999988887653 2455667
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccccccC
Q 022765 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256 (292)
Q Consensus 177 L~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~kDer~~~ 256 (292)
...-..++.+.....++=+|-.-|.|++++.+ ..+....+.|+.+.-+.-+.--.+-+...+.+|++-
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~----------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-- 234 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFG----------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-- 234 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--
Confidence 77777777777778889999999999988521 122334455666666665555566666666666543
Q ss_pred CCchhHHHHHH-HhhhcChh--HHHHHHhhcC
Q 022765 257 LKIYPILQKVY-LERILRKP--EIDAFAEELK 285 (292)
Q Consensus 257 Lp~y~iL~Kmf-~~rii~~~--ev~~F~~~L~ 285 (292)
...|-.+. ......++ ...++-..|+
T Consensus 235 ---~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 235 ---PDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp ---HHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 22344444 33444443 4666766665
No 32
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=83.77 E-value=3.9 Score=30.54 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=53.0
Q ss_pred hccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHH
Q 022765 109 EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILD 188 (292)
Q Consensus 109 e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d 188 (292)
+|+|..|......+-=.+ +.+..-.+|..+++.|...|++.+|-.++++ ... ++.....+| ..|+.+-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~---~~~~~~~~~--l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK--LKL---DPSNPDIHY--LLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC--HTH---HHCHHHHHH--HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH--hCC---CCCCHHHHH--HHHHHHH
Confidence 578888888776642111 1122556888899999999999999999999 111 112233444 4488887
Q ss_pred HhhHHHHHHHHHH
Q 022765 189 LKRKFLEAALRYY 201 (292)
Q Consensus 189 ~~rkFLeAa~~Y~ 201 (292)
.-++|=+|-..|-
T Consensus 70 ~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 70 KLGKYEEAIKALE 82 (84)
T ss_dssp HTT-HHHHHHHHH
T ss_pred HhCCHHHHHHHHh
Confidence 7788777766654
No 33
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=83.71 E-value=37 Score=31.48 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~ 174 (292)
...-..|+.++...|++.+|...+... +... . +.......|.-.++++++.||+..|..+++++...-......
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~--~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~- 222 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD--C--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA- 222 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--C--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH-
Confidence 345677899999999999999998863 2221 1 234456788899999999999999999999984322211111
Q ss_pred HHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHhc
Q 022765 175 LNLQYKV-CYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE-EALEQALSAAVTCTILAAAGPQRSRVLATLYK 250 (292)
Q Consensus 175 LkL~y~~-~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide-~e~~~~L~~Av~caILApagp~RSrlL~~L~k 250 (292)
.-.+.. .+.+.++..+. .+.+.++.++..... +.++. .-....+ +.+.+.+.....++=.++|..+-.
T Consensus 223 -~~~~~~~~~l~~~~~~g~-~~~~~~w~~~~~~~~-----~~~~~~~~~~~~~-~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 223 -LDLLDAASLLWRLELAGH-VDVGDRWEDLADYAA-----WHFPDHGLAFNDL-HAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred -HHHhhHHHHHHHHHhcCC-CChHHHHHHHHHHHH-----hhcCcccchHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111122 33444444443 556666655544321 11111 0011112 455555555555555556655533
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=83.37 E-value=20 Score=35.46 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
-.++|..||.++-+|.+|.++=..+..-+++ .| .-+-..||-+-+..++.++|..+|-..++|+..--.+|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~-~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c 213 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TY-RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC 213 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc
Confidence 4678999999999999997774443333322 22 24678899999999999999999999999997655443
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=83.26 E-value=22 Score=31.53 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHH-HHhccCc--hhhHHHHHhhhhhhcccCch
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIAR-LYLEDDD--AVNAEAFINKASFLVSSSQQ 172 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~r-L~Le~~D--~~~Ae~~~nK~s~~~~~~~~ 172 (292)
......|+.+|...|++.+|...+... ..+.+ ...+++...+. +|...|+ +.+|...++++...-.+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~A------l~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~-- 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQA------LQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE-- 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH------HHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--
Confidence 445677899999999999999988652 12222 35778888888 4677777 589999999998877642
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 173 ~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
.......|..+...++|=+|-..|..+....
T Consensus 144 ----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 ----VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2355677888888999999999999998753
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=83.16 E-value=3.5 Score=31.47 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCC-CCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDL-DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~v-Et~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
......++.++...|++.+|.+.+..+.- ...+ ......+...++.+...+++..|..+++++.....+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-----PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 34567799999999999999999997532 2211 134567889999999999999999999999888765
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.84 E-value=8 Score=27.31 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh
Q 022765 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR-KFLEAALRYYDISQ 205 (292)
Q Consensus 136 Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~r-kFLeAa~~Y~els~ 205 (292)
..++|...+..++..+|+..|..+.+++..+-.+ +.. .+.-++.++-..+ +|-+|-..|.....
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~----~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAE----AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHH----HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH----HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4678999999999999999999999999987532 222 3444555555555 67777666665443
No 38
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.67 E-value=37 Score=35.29 Aligned_cols=129 Identities=18% Similarity=0.142 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhc-CcccchhHhHHHHHHHHHHH-HHhhccHHHHHHHhccCCCCCCCccC-ChHHHHHHHHHHHHHHhcc
Q 022765 74 KEIANYTLAQIQ-PRVVSFEEQVLIIREKLADL-YESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLED 150 (292)
Q Consensus 74 ~~~~~~~L~~i~-~~~i~~E~q~a~lr~~LA~i-~E~e~~~~~AA~~L~~I~vEt~~~~~-~~~eKl~~~l~i~rL~Le~ 150 (292)
+..|+.+|+.+- ..+.+. ++.+++|.+||.+ ++.-+|+++|-..|..--.=.....+ +.++.+++.+ +++|-..
T Consensus 37 I~~ai~CL~~~~~~~~l~p-~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSP-RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFKT 113 (608)
T ss_pred HHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHhc
Confidence 677889999886 666665 6679999999999 45668999998888742111111122 2345666666 8888888
Q ss_pred CchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 151 DDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 151 ~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+-.. |-.++++.....-..........|+.+-+.+.-..+++-.|...+..++..
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8777 999999988877654445555666666555553348999999999999986
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=82.36 E-value=43 Score=33.64 Aligned_cols=156 Identities=19% Similarity=0.111 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhc---CCcchhhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhcCcccchh
Q 022765 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLS---DDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFE 92 (292)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~---~~v~lv~sR~~l~~~~~~l~~l~-~~~~~~~~~~~L~~i~~~~i~~E 92 (292)
+...|..+|++.-+.+..++|+.+-..+-. .+..++ ..++..+-.+. ++..+++..++|...-+..
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~------~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---- 297 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV------VAYAERLIRLGDHDEAQEIIEDALKRQWDPR---- 297 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH------HHHHHHHHHcCChHHHHHHHHHHHHhccChh----
Confidence 345789999999888888888888877642 334443 45667766764 6668999999998764433
Q ss_pred HhHHHHHHHHHHH-HHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc
Q 022765 93 EQVLIIREKLADL-YESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (292)
Q Consensus 93 ~q~a~lr~~LA~i-~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~ 171 (292)
|+...... -+..+..-++++-...-.-|+ + .++.--.|||+..++|.+|+.|++++...-.+..
T Consensus 298 -----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~------p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 298 -----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED------P----LLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred -----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC------h----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 33333333 233444455555444422121 1 6888899999999999999999997766665433
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 022765 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (292)
Q Consensus 172 ~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els 204 (292)
| +...|..+|.-++--+|.++|.+-.
T Consensus 363 ~-------~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 363 D-------YAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred h-------HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3 3445677777777667766666643
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=81.64 E-value=79 Score=33.78 Aligned_cols=100 Identities=12% Similarity=-0.008 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchH
Q 022765 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (292)
Q Consensus 94 q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~ 173 (292)
+.......+|.++...|++.+|..+|..+.-.. + .. .++++..+.++...|++.+|+..++++..+.++ +.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-----P-~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd--~~ 427 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-----P-GN-QGLRIDYASVLQARGWPRAAENELKKAEVLEPR--NI 427 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Ch
Confidence 445667789999999999999999999863222 1 12 469999999999999999999999999887754 22
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 174 ~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
. ++...|......++|=+|-.-+.++...
T Consensus 428 ~----l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 428 N----LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred H----HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 4445666777788899988888888775
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.50 E-value=2.6 Score=31.50 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhh
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~ 163 (292)
....-..||.+|-..|+|.+|-.++...+++. .. .+...-.++.|++-|++..|...+.|+
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~-------~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDP-------SN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHH-------CH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCC-------CC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34455669999999999999999998832222 12 233334499999999999999988775
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.86 E-value=69 Score=32.59 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=70.1
Q ss_pred hHhHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 92 E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~-vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
....+.+...++.++...|++.+|...+.... .+. .-...++..+++++..|++..|..+++++......
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~- 191 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP--------RSLYAKLGLAQLALAENRFDEARALIDEVLTADPG- 191 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 34555666777888888888888888887642 111 11346788888888888898888888887654332
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 171 ~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+ .......++++-..++|-+|...|......
T Consensus 192 -~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 192 -N----VDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred -C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 124455677888888888888888877654
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=80.79 E-value=1e+02 Score=34.66 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHH
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y 179 (292)
..|-..|.+.|++.+|-+++.++.-+.. + +.++ ...|--.+..|...|++..|..+.++....-... ....
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~-g-i~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-----~~~t 616 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETH-P-IDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-----TPEV 616 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcC-C-CCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----ChHH
Confidence 4456667777777777777777644321 1 2222 2356666677777777777777776654432211 1123
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 180 KVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 180 ~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
+..++..+-..+++-+|-.-|.++..
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45555555556666666666666554
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=79.93 E-value=23 Score=39.55 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHH
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL 177 (292)
+...||.+++..|++.+|...+..+---. + .-.+.++..+++|...|++..|..+++++..... ++..
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~------P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p--~~~~--- 672 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE------P-GNADARLGLIEVDIAQGDLAAARAQLAKLPATAN--DSLN--- 672 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CChH---
Confidence 34456777777777777776666532111 1 1245677788888888888888888887654332 2222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 178 ~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
....+++++...+++=+|.+.|..+...
T Consensus 673 -~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 673 -TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2445788888889998988888887653
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=79.47 E-value=15 Score=39.98 Aligned_cols=97 Identities=7% Similarity=-0.014 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHH
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~Lk 176 (292)
.....+|.++..+|+|.+|.+++..+--.. ++. .+.+.-.+.+|++.+.+.+|..+++|+.....+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~------- 168 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKD-----PTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPT------- 168 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------
Confidence 455667999999999999999999872222 112 345566699999999999999999999877653
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 177 L~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
..++...+.+.....++.+|...|.++....
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 3334556777767788888888888888763
No 46
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=78.83 E-value=3.4 Score=29.55 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 102 LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
|+.+|-..|+|.+|.+++..+ -.+.++ -...|..-+++|...|++..|-..++++...-.+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~------l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERA------LELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHH------HHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 567888999999999988874 222222 5668888999999999999999999998866553
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=78.51 E-value=18 Score=25.26 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 142 QIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 142 ~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
..++.+++.||+..|...++++.....+ ........++++...++|-+|...|.+....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999877743 4556677899999999999999888877654
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=78.37 E-value=7.1 Score=26.58 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhh
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~ 166 (292)
.....++.++-..|++.+|.+.+... ..... .. ..+...+.+++..+|+..|..+++++...
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NA--KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ch--hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 45567899999999999999988763 22111 11 68889999999999999999999887643
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=78.21 E-value=16 Score=40.81 Aligned_cols=103 Identities=15% Similarity=0.024 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
...+..|+.++...|++.+|.+.+..++ +.. ..-...+...++.+.+.|++.+|..+++++.....+.....-
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll-~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLP-ATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHh-ccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 4567788999999999999999999653 111 123456778899999999999999999999887654322111
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
....+.-.|++....+++=+|...|..-..
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 233444559999999999999888887753
No 50
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.72 E-value=86 Score=31.90 Aligned_cols=167 Identities=17% Similarity=0.070 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHH
Q 022765 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (292)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a 96 (292)
..+.+-..-...+..++.+.-...+...+..+....-.+-.+........+. +........+++. .| ...
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~-~~-------~~~ 90 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDY--AAAEKELRKALSL-GY-------PKN 90 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc-CC-------Chh
Confidence 3344555555555666664444444444333333334444444444333332 2233333333332 11 123
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHH
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~Lk 176 (292)
..+..++.++...|++.+|...+...+.. ++....+.+..++..|...+++..|..+++++.....+ +.+
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~-- 160 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLL------DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLY-- 160 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccC------CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--Chh--
Confidence 45677899999999999999999875422 33456778999999999999999999999999765543 222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 177 L~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
-+...|+++-..++|-+|-..+.++..
T Consensus 161 --~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 161 --AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred --hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 235567777777888777777666544
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=77.69 E-value=55 Score=31.90 Aligned_cols=60 Identities=18% Similarity=-0.032 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 022765 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (292)
Q Consensus 137 l~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~el 203 (292)
.++++-.+|+|+..++|..|+.+..++...-.+ +++ +..+++++...++--+|+++|.+=
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~--~~~-----~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD--AYD-----YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HHH-----HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357888899999999999999999999876432 222 346899999999988888888765
No 52
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=77.58 E-value=21 Score=30.32 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
.+.....++..+...|++.+|...+... .+.. +..+....|...+.+|...|++..|..+..++......
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3445678899999999999999988753 1111 11235678999999999999999999999999886543
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=77.52 E-value=13 Score=29.41 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
......++..+...|++.+|..++... ..+ ......+...+.+|...||+.+|..+.+++..+..+
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 466678899999999999999887653 221 123567788899999999999999999999888754
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=76.79 E-value=23 Score=31.00 Aligned_cols=104 Identities=12% Similarity=-0.017 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHHhcc--------CchhhHHHHHhhhhhhcc
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLED--------DDAVNAEAFINKASFLVS 168 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~-vEt~~~~~~~~eKl~~~l~i~rL~Le~--------~D~~~Ae~~~nK~s~~~~ 168 (292)
....++.++...|+|.+|...+..+- ..... . +-...+......+... +++..|..+.+++.....
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~----~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-P----DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-C----chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 45778999999999999999998752 22211 1 1112344455555544 889999999999988776
Q ss_pred cCch-HHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 169 SSQQ-EVLNL----------QYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 169 ~~~~-~~LkL----------~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+... ..... .+...+|.++-.+++|-+|-..|.+....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5422 11111 12235566777778888888888887764
No 55
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.79 E-value=4.6 Score=24.75 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
++|..++.+|...||+..|..+.+|+..+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 689999999999999999999999987653
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.06 E-value=87 Score=31.14 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCCh
Q 022765 54 SRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 133 (292)
Q Consensus 54 sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~ 133 (292)
||..+..+---|.+=|+... +.- ++.++..+-+||-+. .|-..+-..|+.+.|-++=|.+ +++ -.++.
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAv-dlF---~e~l~~d~~t~e~~l-----tLGnLfRsRGEvDRAIRiHQ~L-~~s--pdlT~ 103 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAV-DLF---LEMLQEDPETFEAHL-----TLGNLFRSRGEVDRAIRIHQTL-LES--PDLTF 103 (389)
T ss_pred cHHHHhHHHHHhhcCcchHH-HHH---HHHHhcCchhhHHHH-----HHHHHHHhcchHHHHHHHHHHH-hcC--CCCch
Confidence 44444444444444444433 222 333446677777665 4899999999999999999986 344 26899
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHhhh
Q 022765 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (292)
Q Consensus 134 ~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~ 163 (292)
+.|+....+-++-|+..|=+.+||...+-.
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999988744
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=75.35 E-value=11 Score=41.24 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=61.9
Q ss_pred hhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 91 ~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
..+.+.-|-..+|+.+-..|.+.+|-+.|..|-=..+. .-.-+|.+++|+|++.+.+..|..+.+|+....++
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 36777888899999999999999999999887433322 22779999999999999999999999999887764
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=75.15 E-value=1.1e+02 Score=31.74 Aligned_cols=99 Identities=20% Similarity=0.112 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcC
Q 022765 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (292)
Q Consensus 133 ~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~ 212 (292)
+...+=+|.=++..|-..||+.+|-.|++++...... .+.+|..-|||+-|.++|-+|+..+-+--.
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~------- 256 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEARE------- 256 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------
Confidence 3345556677799999999999999999999876543 367899999999999999999988877655
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 022765 213 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (292)
Q Consensus 213 ~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~ 249 (292)
.|..|| -.-+.++.+.+=+. -.+...-+..+|
T Consensus 257 ---LD~~DR-yiNsK~aKy~LRa~-~~e~A~~~~~~F 288 (517)
T PF12569_consen 257 ---LDLADR-YINSKCAKYLLRAG-RIEEAEKTASLF 288 (517)
T ss_pred ---CChhhH-HHHHHHHHHHHHCC-CHHHHHHHHHhh
Confidence 577887 33444555555444 344444444444
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=74.71 E-value=31 Score=38.36 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=72.7
Q ss_pred hHHHHHHH--HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc
Q 022765 94 QVLIIREK--LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (292)
Q Consensus 94 q~a~lr~~--LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~ 171 (292)
|+.++... .|..+..+|||.+|-..+... -..+++. ..++...+++|+..|++.+|+.++.|+..+-. +
T Consensus 40 ~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~A------l~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~ 110 (987)
T PRK09782 40 RHFVIYPRLDKALKAQKNNDEATAIREFEYI------HQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--G 110 (987)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH------HHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--c
Confidence 34444333 355677779999999988874 2334444 77889999999999999999999999988754 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 172 ~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
| ..|+...+.| ++|-+|+.-|.++....
T Consensus 111 n----~~~~~~La~i----~~~~kA~~~ye~l~~~~ 138 (987)
T PRK09782 111 D----ARLERSLAAI----PVEVKSVTTVEELLAQQ 138 (987)
T ss_pred c----HHHHHHHHHh----ccChhHHHHHHHHHHhC
Confidence 3 3344444666 88899999999999863
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=73.91 E-value=1.1e+02 Score=31.52 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc--CchHHH
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS--SQQEVL 175 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~--~~~~~L 175 (292)
+-..-|+|+...|++.+||+.+.. .|.++..++- +--+.+..+|..|+...|+..+..-..--.+ .+-.+.
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~------Ar~LD~~DRy-iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDE------ARELDLADRY-INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH------HHhCChhhHH-HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 334457888888888888888876 3555443321 4556677788888888887766544222111 011122
Q ss_pred H-HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 176 N-LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 176 k-L~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
+ +-|..=.|+-+-..+++-.|=++|+.|..
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 34555556666667777778888887765
No 61
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=73.72 E-value=67 Score=33.60 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=72.7
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHH
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y 179 (292)
..+.+.+...|++.+|-+++..+|+... ..+|--.+..|-..|+...|+...++...+-.+ ....
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~p~---------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~------~~~~ 530 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFKPT---------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE------KLNN 530 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC------CCcc
Confidence 3467889999999999999988765442 236888999999999999999988887543322 1335
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 180 ~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
|.+++.++-..+++-+|.+-+.++-..
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 788999999999999999999888764
No 62
>PLN03077 Protein ECB2; Provisional
Probab=72.51 E-value=1.2e+02 Score=32.43 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHH
Q 022765 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (292)
Q Consensus 99 r~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~ 178 (292)
-..+.+.+...|++.+|-+++.++|++.. ..+|--....|--.++...|+...+++..+-.+ ...
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd---------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~------~~~ 692 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPD---------PAVWGALLNACRIHRHVELGELAAQHIFELDPN------SVG 692 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------Ccc
Confidence 35577888888889999888888875442 346766777777777888887777666554322 245
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 179 YKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 179 y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
||.+++.++...+++-+|++-...+-.
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 788999999999999999887777654
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=71.94 E-value=58 Score=27.28 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcc
Q 022765 93 EQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 93 ~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
+..+.....++..+...|++.+|-..+... .+.. +.......|..++.+|...|++..|..++.++..+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 335666678889999999999998876653 1211 1123455899999999999999999999999987743
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=71.84 E-value=1.8e+02 Score=32.85 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=10.6
Q ss_pred HHHHHHhhccHHHHHHHhccC
Q 022765 102 LADLYESEQQWSKAAQMLSGI 122 (292)
Q Consensus 102 LA~i~E~e~~~~~AA~~L~~I 122 (292)
|-..|.+.|++.+|-+++.++
T Consensus 620 LI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 344444555555555555544
No 65
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=71.50 E-value=1.1e+02 Score=30.65 Aligned_cols=200 Identities=13% Similarity=0.211 Sum_probs=125.4
Q ss_pred hhcCCCHHHHHHHHHHH--hcCCcchhhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhhcCcccchhHhHHHHHHHHH
Q 022765 28 VISSNDIVQAKKFIDHM--LSDDVPLVVSRQLLQTFAQELGRLEPE--TQKEIANYTLAQIQPRVVSFEEQVLIIREKLA 103 (292)
Q Consensus 28 i~~~~~~~~l~~~i~~~--~~~~v~lv~sR~~l~~~~~~l~~l~~~--~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA 103 (292)
+...++..+|..+|.++ +=++++=.=+-.++-+++.++.++|+. ....++..+++--+..+=.|-.| .|.-.|+
T Consensus 58 l~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq--~Learli 135 (411)
T KOG1463|consen 58 LAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ--SLEARLI 135 (411)
T ss_pred HHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH--HHHHHHH
Confidence 33445667777777775 235566556666777778888787643 46777777776554433333322 2333467
Q ss_pred HHHHhhccHHHHHHHhccCCCCCCCccCChHH-HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC-chHHHHHHHHH
Q 022765 104 DLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF-RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKV 181 (292)
Q Consensus 104 ~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~e-Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~-~~~~LkL~y~~ 181 (292)
..|-..++|.+|-.....+-=|- +.|+|.. =+++++.--..|-+-...-+|..-+--|....... -+|.++-.--.
T Consensus 136 ~Ly~d~~~YteAlaL~~~L~rEl--KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 136 RLYNDTKRYTEALALINDLLREL--KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH--HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 88999999999877666554443 4566655 45666666666666666666655444433333221 23444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCH-HHHHHHHHHHHHHHhcCCC
Q 022765 182 CYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE-EALEQALSAAVTCTILAAA 237 (292)
Q Consensus 182 ~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide-~e~~~~L~~Av~caILApa 237 (292)
.-.-+.-..++|=-|...|||-+.- ...++. .+-...|+-.+.|=|...-
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEg------f~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEG------FDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred hccceeecccccchHHHHHHHHHcc------ccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 4444445569999999999999882 456644 4678889999999887653
No 66
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=71.05 E-value=39 Score=31.70 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCcch----hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCccc-chhHhHHHHHHHHHHHHHhh
Q 022765 35 VQAKKFIDHMLSDDVPL----VVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVV-SFEEQVLIIREKLADLYESE 109 (292)
Q Consensus 35 ~~l~~~i~~~~~~~v~l----v~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i-~~E~q~a~lr~~LA~i~E~e 109 (292)
..|..++.++++++.+. ......|...++-++..|. .-++...++|++-.+-= .+..-.-.=+..+.+..+ .
T Consensus 116 ~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~--~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~-~ 192 (258)
T PF07064_consen 116 HALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPE--YLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLE-N 192 (258)
T ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcc--hHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHH-c
Confidence 67788888888888765 6788888888888888643 45666677776643221 222222233444444444 8
Q ss_pred ccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhh
Q 022765 110 QQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (292)
Q Consensus 110 ~~~~~AA~~L~~I~-vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s 164 (292)
|+...||..|-=++ .|+ .-.+.+++-.+..+++.+..++.+||.-+.-.++=..
T Consensus 193 ~~l~tAa~yLlVl~~~e~-~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 193 GNLKTAASYLLVLQNLEG-SSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred CcHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 89999999887665 333 2233467788899999999999999999888776443
No 67
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.64 E-value=7.2 Score=23.39 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 139 KCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 139 ~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
-+.+++++|.+.||+.+|..+.+++...+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4678999999999999999999998877654
No 68
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=70.20 E-value=9.2 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 137 l~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
.+.|..++..|+..+++..|..+.+|+..+-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3689999999999999999999999987654
No 69
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=69.50 E-value=11 Score=33.03 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q 022765 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTI 233 (292)
Q Consensus 170 ~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caI 233 (292)
....+...||....=||.|...+-=.--+.+|+||-+++..+....-|.++++.+|-.|=.|||
T Consensus 57 ~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC~~a~LPedp~D~~~~l~vlv~AE~CAi 120 (172)
T COG2406 57 EAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGCKPAYLPEDPYDIDEILAVLVKAERCAI 120 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 3456889999999999999998888888899999998762222223388999999999999998
No 70
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=69.44 E-value=5.1 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHHhhccHHHHHHHhcc
Q 022765 100 EKLADLYESEQQWSKAAQMLSG 121 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~ 121 (292)
..||.+|...|+|.+|.++...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3689999999999999988754
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.82 E-value=10 Score=22.88 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhcc
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
+.|-.++..|...|++.+|..+.+|+..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999977653
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=68.61 E-value=64 Score=27.04 Aligned_cols=88 Identities=10% Similarity=-0.042 Sum_probs=62.4
Q ss_pred cHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHh
Q 022765 111 QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190 (292)
Q Consensus 111 ~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~ 190 (292)
++..+...|..| -+..+.+-+...|..++.++...+++..|..+.+++..+..+.. + ...-+..++.++...
T Consensus 14 ~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~-~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 14 TFTIVADILLRI-----LPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY--D-RSYILYNIGLIHTSN 85 (168)
T ss_pred ccccchhhhhHh-----ccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch--h-hHHHHHHHHHHHHHc
Confidence 345555555544 11334456899999999999999999999999999987754321 1 122345678889999
Q ss_pred hHHHHHHHHHHHHHhh
Q 022765 191 RKFLEAALRYYDISQI 206 (292)
Q Consensus 191 rkFLeAa~~Y~els~~ 206 (292)
++|-+|-..|......
T Consensus 86 g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 86 GEHTKALEYYFQALER 101 (168)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9998877777666553
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=67.29 E-value=1.3e+02 Score=31.25 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=100.5
Q ss_pred HHHHHhcCC-ChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCC---CccCChHH
Q 022765 60 TFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG---MRVIDDTF 135 (292)
Q Consensus 60 ~~~~~l~~l-~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~---~~~~~~~e 135 (292)
.|...+..+ ..+.+..+-..+|.........--+.++..=..||..|-+.|++++|....... ++=+ .+ -+..+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A-l~I~~~~~~-~~~~~ 323 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA-LEIYEKLLG-ASHPE 323 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH-HHHHHHhhc-cChHH
Confidence 444444444 355567777777776554444455778888899999999999999887554321 0000 01 12223
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 136 Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~--~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
=...+..++-+|--.+++..|..|..|+..++.+. .+....-++|.-+++.+-+-++|-||=.-|.+.-..
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34456677777777899999999999998888643 333356788999999999999999998888777664
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=67.18 E-value=1.2e+02 Score=29.52 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=33.6
Q ss_pred HHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcc
Q 022765 106 YESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 106 ~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
-...|++..|-+.|... ...+++..+-..+..+++++..||+..|..+.++......
T Consensus 128 A~~~g~~~~A~~~l~~A------~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P 184 (398)
T PRK10747 128 AQQRGDEARANQHLERA------AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP 184 (398)
T ss_pred HHHCCCHHHHHHHHHHH------HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 36666666666666553 1223333444455566777777777777777776655543
No 75
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=66.77 E-value=55 Score=36.27 Aligned_cols=139 Identities=15% Similarity=0.072 Sum_probs=94.5
Q ss_pred chhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 90 ~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
.+...-...+.+|..++-.+|++.+|.+++.+ .++... ..+++|.--+-+|+..+.+..|-.. ++...+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~-~l~~~P------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEE-HLKEHK------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCC------cceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 34555567788999999999999999999884 333322 3445666556699999998888777 77777777
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 022765 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (292)
Q Consensus 170 ~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~ 249 (292)
..+..+.-.|+.|+..+.+++.-.---|-+|..+-.. ++-..+...+ .-+-|..|.=-.-++-.|
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~------------~ka~~~yer~---L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN------------KKLKGVWERL---VKADRDNPEIVKKLATSY 160 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh------------HHHHHHHHHH---HhcCcccHHHHHHHHHHH
Confidence 7778999999999999999997666666666555442 1112222222 223366666655666666
Q ss_pred ccc
Q 022765 250 KDE 252 (292)
Q Consensus 250 kDe 252 (292)
..+
T Consensus 161 ae~ 163 (906)
T PRK14720 161 EEE 163 (906)
T ss_pred HHh
Confidence 555
No 76
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.48 E-value=1.3e+02 Score=28.90 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc-------------------hHHHHHHHHHHHHHHHHHhhHHHH
Q 022765 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-------------------QEVLNLQYKVCYARILDLKRKFLE 195 (292)
Q Consensus 135 eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~-------------------~~~LkL~y~~~~ari~d~~rkFLe 195 (292)
|=+.+|-+-..+|+|.|-+..|-.-+-|+.....+++ -...-..++--..|++---++|.|
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 4566677777777777777777777777766654432 112223344456677777888888
Q ss_pred HHHHHHHHHh
Q 022765 196 AALRYYDISQ 205 (292)
Q Consensus 196 Aa~~Y~els~ 205 (292)
|+.-+.....
T Consensus 169 aa~a~lKe~~ 178 (308)
T KOG1585|consen 169 AATAFLKEGV 178 (308)
T ss_pred HHHHHHHhhh
Confidence 8877765544
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=65.31 E-value=19 Score=32.82 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
..++.++...|+|.++.+++..+. +. ..+ ..-..+|..-++++...|++..|....+|+..+.++
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~-~~--~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLE-EL--PAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHH-H---T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHH-hc--cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 346678899999999999999865 11 112 244678999999999999999999999999888764
No 78
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.29 E-value=7.1 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccC
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGI 122 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I 122 (292)
....||..|+..|++.+|.+++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=64.96 E-value=2e+02 Score=30.75 Aligned_cols=103 Identities=12% Similarity=0.025 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCC--------CccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSG--------MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~--------~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
....|+.++...|++.+|...|..+.-... ....+.+.+.+.+...+.++...||+..|...+.++......
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345677788999999999999877643321 123445568889999999999999999999999999777643
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 170 ~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+.+ .....|.++...+++-+|-+.|......
T Consensus 392 --n~~----l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 392 --NQG----LRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred --CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 333 4456777888888888887777777664
No 80
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.94 E-value=20 Score=29.22 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHH
Q 022765 22 KHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREK 101 (292)
Q Consensus 22 ~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~ 101 (292)
..++..+...+....+..|+++++..+ + ....+-+.++....+..+....+. |.. +.....+ ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~--~~~~~~~~li~ly~~~~~~~ll~~----l~~-~~~~yd~--------~~ 74 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-S--ENPALQTKLIELYAKYDPQKEIER----LDN-KSNHYDI--------EK 74 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-c--cchhHHHHHHHHHHHHCHHHHHHH----HHh-ccccCCH--------HH
Confidence 345555555556788999999998765 2 455555555555444332222222 221 1111112 22
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhcc-CchhhHHHHHhhh
Q 022765 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKA 163 (292)
Q Consensus 102 LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~-~D~~~Ae~~~nK~ 163 (292)
.+++++..|-|.+|+-++.. ...|-+.+.++++. +|+..|..|+++.
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k---------------~~~~~~Al~~~l~~~~d~~~a~~~~~~~ 122 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK---------------DGNFKDAIVTLIEHLGNYEKAIEYFVKQ 122 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh---------------hcCHHHHHHHHHHcccCHHHHHHHHHhC
Confidence 45566666666666666643 22344555566666 7777777777763
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.79 E-value=99 Score=29.92 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~ 174 (292)
......+|.+|...|++.+|...+... .++. . -...|.+.+.+|+..|++..|..++.++..+.. ++.+
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P--~~~~ 105 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDP-------S-LAKAYLRKGTACMKLEEYQTAKAALEKGASLAP--GDSR 105 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHH
Confidence 456678899999999999999887653 2222 1 244688899999999999999999999987664 4566
Q ss_pred HHHHHHHHHHHHHH
Q 022765 175 LNLQYKVCYARILD 188 (292)
Q Consensus 175 LkL~y~~~~ari~d 188 (292)
+...-..|..++..
T Consensus 106 ~~~~l~~~~~kl~~ 119 (356)
T PLN03088 106 FTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666643
No 82
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=62.00 E-value=10 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 140 CVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 140 ~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
|..++++|...|||.+|..+..++..+-
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999999976443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=61.37 E-value=1.4e+02 Score=27.79 Aligned_cols=100 Identities=12% Similarity=-0.031 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc
Q 022765 93 EQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (292)
Q Consensus 93 ~q~a~lr~~LA~i~E~e~~~~~AA~~L~~-I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~ 171 (292)
++.+..-..++.+|...|++.+|...+.. +.++. + -.+.|...+..|...||+..|....+++..+-.+.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~- 131 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRP-------D-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY- 131 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 45566667778888888888888765543 22222 1 14678888888899999999988888887665432
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 172 ~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
.. .+...+.++-..++|-+|-+.|......
T Consensus 132 -~~----a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 132 -NY----AYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred -HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 2233444555566777776666665553
No 84
>PRK12798 chemotaxis protein; Reviewed
Probab=61.19 E-value=35 Score=34.49 Aligned_cols=72 Identities=19% Similarity=0.087 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 130 VIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 130 ~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
.|+++.+.++||+|+|--+-.|...-|.--++|+..+....+-+.-..++|.-.+++..-. +-++ ..+|+..
T Consensus 250 ~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~--~~~a---l~~L~~I 321 (421)
T PRK12798 250 FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD--AESA---LEELSQI 321 (421)
T ss_pred hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc--HHHH---HHHHhcC
Confidence 5788899999999999999999999999999999999976666667788888888886544 4444 4455543
No 85
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.41 E-value=42 Score=27.37 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=53.8
Q ss_pred chhHhHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcc
Q 022765 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 90 ~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
.+......+-..+++.+...|++.+|.+.+..+ .+|.+ -=..|..-|+.|...|++..|-.+.++....+.
T Consensus 56 ~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 56 RLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 345555666677888999999999999988763 22221 234888999999999999999999999988776
Q ss_pred c
Q 022765 169 S 169 (292)
Q Consensus 169 ~ 169 (292)
+
T Consensus 128 ~ 128 (146)
T PF03704_consen 128 E 128 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=59.71 E-value=56 Score=22.67 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=42.2
Q ss_pred HhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 147 YLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 147 ~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
.++.||+..|..+++++.....+ +.+..+ .+|+++-..++|=+|-..+..+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~--~~~~~~----~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD--NPEARL----LLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT--SHHHHH----HHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 36789999999999999877654 444333 57788888899999988888887753
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=59.59 E-value=1.4e+02 Score=29.88 Aligned_cols=124 Identities=19% Similarity=0.081 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCcc
Q 022765 51 LVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130 (292)
Q Consensus 51 lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~ 130 (292)
-.++=-++..++..+...+ .-+.++..++.+....- ++. -.||+++-..++-.+|.++|..-=-+..
T Consensus 165 t~~~NyLv~~Ll~~l~~t~---~~~~ai~lle~L~~~~p----ev~---~~LA~v~l~~~~E~~AI~ll~~aL~~~p--- 231 (395)
T PF09295_consen 165 TIVNNYLVDTLLKYLSLTQ---RYDEAIELLEKLRERDP----EVA---VLLARVYLLMNEEVEAIRLLNEALKENP--- 231 (395)
T ss_pred CCcchHHHHHHHHHHhhcc---cHHHHHHHHHHHHhcCC----cHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCC---
Confidence 3445566666666665432 24456666666654442 222 3488888888888999998877432221
Q ss_pred CChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 022765 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAA 197 (292)
Q Consensus 131 ~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa 197 (292)
.+ .++...|++.||.++++..|....+|+....... .......|+++-...+|=+|-
T Consensus 232 ~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 232 QD----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHH
Confidence 12 7899999999999999999999999999888653 222223555555555555553
No 88
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.94 E-value=94 Score=30.03 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHH
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~Lk 176 (292)
..+..=|.+|..+|++.+|-+.+-. +++ +|...=.+..++...-+.-|+.-++|.. +.+++...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~--~~~----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq----~ided~tL 172 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL--GEN----------LEAAALNVQILLKMHRFDLAEKELKKMQ----QIDEDATL 172 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc--cch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccchHHHH
Confidence 3444557889999999999999877 222 3344444555555555666666666543 33455555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccc
Q 022765 177 LQYKVCYARILDLKRKFLEAALRYYDISQ-IQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDE 252 (292)
Q Consensus 177 L~y~~~~ari~d~~rkFLeAa~~Y~els~-~~~~~~~~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~kDe 252 (292)
.+--..++.+.....++-||---|.|+|+ +++ -|+...+.||.|.-+-.+.--.+=+...|-||.
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~-----------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP-----------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCC-----------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 66777778888888888888888888888 422 123344444544444444444444444444443
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.90 E-value=84 Score=29.40 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=65.7
Q ss_pred hhccHHHHHHHhccCCCCCCCccCCh-HHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC-chHHHHHHHHHHHHH
Q 022765 108 SEQQWSKAAQMLSGIDLDSGMRVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYAR 185 (292)
Q Consensus 108 ~e~~~~~AA~~L~~I~vEt~~~~~~~-~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~-~~~~LkL~y~~~~ar 185 (292)
.+|+|.+|...+..+-- .+++ .+.-..+..++.+|+..+|+..|-.+..++...+.+. ..++..+ -++.
T Consensus 155 ~~~~y~~Ai~af~~fl~-----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~----klg~ 225 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVK-----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF----KVGV 225 (263)
T ss_pred hcCCHHHHHHHHHHHHH-----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH----HHHH
Confidence 35899999988877521 1222 2334567788999999999999999999999888753 3333322 2466
Q ss_pred HHHHhhHHHHHHHHHHHHHhh
Q 022765 186 ILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 186 i~d~~rkFLeAa~~Y~els~~ 206 (292)
++...+++=+|...|..+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677788899999999988775
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=58.04 E-value=1.9e+02 Score=28.20 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhc
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~-I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~ 167 (292)
.+...|+.++-..|+|.+|-+.|.. .-++. -++. +.+..-++++.+.||...|..+.+++-...
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~----~p~~---~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKE----QLDA---NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhc----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4555666666666666666666652 11111 0111 124455666666666666666666654433
No 91
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=57.57 E-value=1.2e+02 Score=29.34 Aligned_cols=91 Identities=15% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHH
Q 022765 102 LADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (292)
Q Consensus 102 LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~ 180 (292)
.|...-.+|+|.+|...+... .++.. -...|...+..|+..|++..|..+++++..+... +.. .+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~----a~ 73 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAK----AY 73 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHH----HH
Confidence 366667789999999877653 22221 2468899999999999999999999999887543 222 24
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 181 VCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 181 ~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
...+.++-..++|=+|...|......
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45577888889999999988887764
No 92
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=56.86 E-value=20 Score=23.74 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
+.|+.-++.|.+.|++.+|+...+|+.....+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46888999999999999999999999887654
No 93
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=27 Score=36.08 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCCh-HHHHHHHHHHHHHHhccCchhhHHHHHhhhhhh
Q 022765 98 IREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~-I~vEt~~~~~~~-~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~ 166 (292)
.--.||+.||.-++..+||+.... |.+...-|..++ -.|..+| -++.+...+||..|+.|.++++.-
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 335799999999999999986543 222221234444 5677777 678899999999999999998776
No 94
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.84 E-value=1.9e+02 Score=27.64 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred HHHHHHHhccCchhhHHHHHhhhhhhcccC-chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHH
Q 022765 141 VQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEE 219 (292)
Q Consensus 141 l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~-~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~ 219 (292)
++-.-.+|-+.|.+.|..-+-|--.+.+.- +..+.|+-=.++-|-=-..-..|.|.++.|-.||-. +
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrL------------D 266 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRL------------D 266 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchH------------H
Confidence 333444566688888887777776666543 445666655555444444567899999999999886 7
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 022765 220 ALEQALSAAVTCTILAAA 237 (292)
Q Consensus 220 e~~~~L~~Av~caILApa 237 (292)
.|..++-.=|.+.|-...
T Consensus 267 ~W~ttiLlkiK~siq~~e 284 (288)
T KOG1586|consen 267 QWKTTILLKIKKSIQGDE 284 (288)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 899988888888876543
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=55.67 E-value=24 Score=40.70 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=90.2
Q ss_pred HhhcCCC-HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh-cCc---cc--chhHhH----
Q 022765 27 SVISSND-IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQI-QPR---VV--SFEEQV---- 95 (292)
Q Consensus 27 ~i~~~~~-~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i-~~~---~i--~~E~q~---- 95 (292)
.+.++|+ .=.|..++.|.++-+ -+--.|.+-..+...+.=-..+....+++..|+.- .=| .. -||...
T Consensus 1450 lvrssPNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 3445554 356777777766322 24556666555544432112222222222222211 111 00 133222
Q ss_pred -HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHH
Q 022765 96 -LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (292)
Q Consensus 96 -a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~ 174 (292)
-.+-..|++||+.-+.+.+|.++|..+= .-+ .+...+|++-+...|..++...|...++||..-....+.-+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~-KKF------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLML-KKF------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHh------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 1345689999999999999999998741 111 15789999999999999999999999999988776543334
Q ss_pred HHHHHHHHHHHHHHH
Q 022765 175 LNLQYKVCYARILDL 189 (292)
Q Consensus 175 LkL~y~~~~ari~d~ 189 (292)
+.=+|-.++=...|.
T Consensus 1602 ~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHHHHhhcCCc
Confidence 433333333333333
No 96
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=54.40 E-value=1.3e+02 Score=30.06 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
..|...|-+++...+.+..|.++|..+.-... +.++-++++|+..++-++|-.+++++...... +-+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p----------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~- 235 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDP----------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ--DSE- 235 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC----------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHH-
Confidence 67888899999999999999999999753331 25667899999999999999999988854432 222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYY 201 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~ 201 (292)
-...+|+.+-.+++|-.|-..-.
T Consensus 236 ---LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 236 ---LLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred ---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 22367888888887744444333
No 97
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.12 E-value=18 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhc
Q 022765 97 IIREKLADLYESEQQWSKAAQMLS 120 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~ 120 (292)
..+..||..+-..|++.+|..+|.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998874
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=54.11 E-value=1.6e+02 Score=26.04 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHH-HHhhH--HHHHHHHHHHHHhh
Q 022765 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL-DLKRK--FLEAALRYYDISQI 206 (292)
Q Consensus 137 l~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~-d~~rk--FLeAa~~Y~els~~ 206 (292)
.+.|...+++|+..+++..|...++|+..+..+ +.++. ..+|.++ ...++ +-+|-+.|.+....
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~----~~lA~aL~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELY----AALATVLYYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 558999999999999999999999999888764 44433 3334432 33333 46676677666664
No 99
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=53.46 E-value=77 Score=22.30 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 144 ARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 144 ~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
...|+..+||..|..++.++..+.++ ....+...|.++-..++|-+|...|......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35789999999999999999888654 2334455788888888999988888877764
No 100
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=51.67 E-value=11 Score=35.07 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHH------hhcCcccchhHhHHHHHHHHHH-HH--Hh
Q 022765 38 KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLA------QIQPRVVSFEEQVLIIREKLAD-LY--ES 108 (292)
Q Consensus 38 ~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~------~i~~~~i~~E~q~a~lr~~LA~-i~--E~ 108 (292)
-.+...++.+..+--.-+++++.|++.|..+|++..-.++.. -. ..++... -+++..+++..|.+ .. .-
T Consensus 130 ~~~A~kiL~~~~d~~~~~~lid~~i~~l~~l~~~~r~~l~~~-~~~~~~~~i~ta~~l-~~~~~~~~~~~l~~~~~~~~~ 207 (250)
T PRK14474 130 VKIIRAALADLANATLEQQIVGIFIARLEHLSEAERQALANS-NTTPEMLRIRTSFEL-SQDLRAQILESLHQTHLIPGT 207 (250)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhcccCHHHHHHHHhh-hcCCCCeEEEeCCCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344555666666666678999999999999999988777543 21 1122222 57899999999999 54 33
Q ss_pred hccHHHHHHHhccCCCCCCCcc
Q 022765 109 EQQWSKAAQMLSGIDLDSGMRV 130 (292)
Q Consensus 109 e~~~~~AA~~L~~I~vEt~~~~ 130 (292)
.=.|..--+.++||.+.+++..
T Consensus 208 ~~~f~~~p~li~Giel~~~~~~ 229 (250)
T PRK14474 208 DIHFVTSPELICGIELKTEGYK 229 (250)
T ss_pred ceeeecCcccccCeEEecCCce
Confidence 3367888899999999997643
No 101
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=50.98 E-value=2e+02 Score=26.42 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChH
Q 022765 55 RQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT 134 (292)
Q Consensus 55 R~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~ 134 (292)
..++...-..++.++++....--+..+|.+--+.+....+.+..-..+|++.-+.|.+.-|...|..+.--.. ....
T Consensus 105 ~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~---~~~~ 181 (352)
T PF02259_consen 105 KSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP---SSES 181 (352)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC---cccC
Confidence 3444555555555544433222233344433333355678888889999999999999999998887532110 0111
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHhhhhh-hccc---------------------------CchHHHHHHHHHHHHHH
Q 022765 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASF-LVSS---------------------------SQQEVLNLQYKVCYARI 186 (292)
Q Consensus 135 eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~-~~~~---------------------------~~~~~LkL~y~~~~ari 186 (292)
....+.++-+++.-..|+...|-..++.... .+.. ..+..++-+.+...++.
T Consensus 182 ~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w 261 (352)
T PF02259_consen 182 LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW 261 (352)
T ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH
Confidence 1567888899999999999888877766655 2221 12345666777777777
Q ss_pred HHHh------hHHHHHHHHHHHHHh
Q 022765 187 LDLK------RKFLEAALRYYDISQ 205 (292)
Q Consensus 187 ~d~~------rkFLeAa~~Y~els~ 205 (292)
.+.. ..+-++.+.|.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 262 LDELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred HHhhccccccccHHHHHHHHHHHHH
Confidence 7776 666666666666654
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.77 E-value=1.4e+02 Score=24.66 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=68.4
Q ss_pred HHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHH
Q 022765 101 KLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (292)
Q Consensus 101 ~LA~i~E~e~~~~~AA~~L~~-I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y 179 (292)
.++.++...|++.+|...+.. +.++. .-.+.|..-+..+...|++..|....+++..+-.+ +.+ .
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~~~----a 94 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP--------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--HPE----P 94 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcH----H
Confidence 468889999999999988765 22222 23578999999999999999999999999976543 322 2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 180 ~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
....+..+-..+++=+|...|......
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333455555678888888888877654
No 103
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=50.44 E-value=62 Score=29.36 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=44.2
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHH
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y 179 (292)
..|..+ ...|++.+|.+++..- .+. .-.-.++...+.+|...+|+.+++..++++...... .-.-.|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~-~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~ 148 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKA-YER-------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA----PDSARF 148 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHH
T ss_pred cccccc-cccccccccccccccc-ccc-------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC----CCCHHH
Confidence 345666 5888999999998641 121 122356667778889999999999999997742211 123567
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 022765 180 KVCYARILDLKRKFLEAALRYYDISQIQ 207 (292)
Q Consensus 180 ~~~~ari~d~~rkFLeAa~~Y~els~~~ 207 (292)
...+|++....+++-+|-..|.......
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8889999999999999999999888863
No 104
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=49.84 E-value=24 Score=36.92 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=50.8
Q ss_pred ChHHHHHHHH----------HHHHHHhccCchhhHHHHHhhhhhhcccC----------chHHHHHHHHHHHHHHHHHhh
Q 022765 132 DDTFRLSKCV----------QIARLYLEDDDAVNAEAFINKASFLVSSS----------QQEVLNLQYKVCYARILDLKR 191 (292)
Q Consensus 132 ~~~eKl~~~l----------~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~----------~~~~LkL~y~~~~ari~d~~r 191 (292)
.+.+|+.++= +++...|-.|....||+.+-++...+..+ ---+|-++||...-|++.+|+
T Consensus 629 ~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~v~~Vl~yR~ 708 (737)
T KOG1524|consen 629 LQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKELVPRVLQYRR 708 (737)
T ss_pred hchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445666654 44666777788888888888877655432 123889999999999999999
Q ss_pred HHHHHHHH
Q 022765 192 KFLEAALR 199 (292)
Q Consensus 192 kFLeAa~~ 199 (292)
|||+++.+
T Consensus 709 KyLk~~g~ 716 (737)
T KOG1524|consen 709 KYLKALGR 716 (737)
T ss_pred HHHHHhcc
Confidence 99999975
No 105
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=49.46 E-value=3.1e+02 Score=28.16 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHH-HHHHHHHHHhccCchhhHHHHHhhhhhhcccCchH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLS-KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~-I~vEt~~~~~~~~eKl~-~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~ 173 (292)
..+...++.++...|+|.+|.+.+.. +.++.... .....+- ++-+-.-+|-..+++..|..+++++..+-.+ +.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~--~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~--~~ 542 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK--PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE--CD 542 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc--cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cH
Confidence 34556689999999999999887765 54443211 1111222 2222333444469999999999998776432 22
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 174 ~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
..+..+++++...++|=+|-..|.....
T Consensus 543 ----~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 ----IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2456779999999998888777766554
No 106
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=48.73 E-value=3.5e+02 Score=28.48 Aligned_cols=98 Identities=16% Similarity=-0.045 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
......|+.++...|++.+|...+...- +. .++ -...+...++.|...|++..|....+++...-.+ +
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l-----~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~--~--- 351 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSL-AT-----HPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV--T--- 351 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--c---
Confidence 4566777888888888888887776531 11 111 1234555677888888888888888777654332 1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
..+....+..+...+++-+|-..|......
T Consensus 352 -~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 -SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123333466667777888888888777664
No 107
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=48.68 E-value=1.1e+02 Score=25.81 Aligned_cols=71 Identities=10% Similarity=-0.088 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 133 ~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+..+...+...+..|...||+..|..+.+++.....+..+ ....+.-++.++...++|-+|...|.+....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778999999999999999999999999776543221 2346677888999999999998888877664
No 108
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.49 E-value=15 Score=25.47 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCC
Q 022765 99 REKLADLYESEQQWSKAAQMLSGID 123 (292)
Q Consensus 99 r~~LA~i~E~e~~~~~AA~~L~~I~ 123 (292)
+..||++|-.-||...|-++|.++-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4579999999999999999999987
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=48.24 E-value=2.6e+02 Score=31.37 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhHHHHHH------------------HHHHHhcCCChHHHHHHHHH
Q 022765 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQ------------------TFAQELGRLEPETQKEIANY 79 (292)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~------------------~~~~~l~~l~~~~~~~~~~~ 79 (292)
...|.-++--....++...-..++...++.+-.--..|.++. .+-+....-+.=..+.+|..
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Q ss_pred HHHhhcCcccchhHhHHHHHHHHHH--------------------HHHhhccHHHHHHHhccCCCCCCCccCChHHHHHH
Q 022765 80 TLAQIQPRVVSFEEQVLIIREKLAD--------------------LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 139 (292)
Q Consensus 80 ~L~~i~~~~i~~E~q~a~lr~~LA~--------------------i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~ 139 (292)
.+++....+=-=|.+.-.....|+- ++-..|+|.+|-.|+..+.=.+. +=..+
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-------~~~dv 682 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-------DFEDV 682 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-------hCCce
Q ss_pred HHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHH
Q 022765 140 CVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196 (292)
Q Consensus 140 ~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeA 196 (292)
||.++-.|++.+.|..|-.-.-+....+.+.++.++ ..|.||++....++=++
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v----l~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV----LHYLARAWYEAGKLQEA 735 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHhhhHHHH
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.76 E-value=50 Score=30.90 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
.....|+..|...|++.+|...+..+- +.+. +....-+.+.+++..|.+.||+..|..+++++...+.+.
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv-~~yP---~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVV-KNYP---KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCC---CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456789999999999999999987752 1110 112345678889999999999999999999998888764
No 111
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=46.68 E-value=31 Score=18.60 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhh
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFL 166 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~ 166 (292)
..|...+.+|...+++..|..+..++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778888999999999999988887654
No 112
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.87 E-value=2.2e+02 Score=28.67 Aligned_cols=131 Identities=17% Similarity=0.117 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhhcCcc---cchhH---hHHHHHHHHHH
Q 022765 34 IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQE---LGRLEPETQKEIANYTLAQIQPRV---VSFEE---QVLIIREKLAD 104 (292)
Q Consensus 34 ~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~---l~~l~~~~~~~~~~~~L~~i~~~~---i~~E~---q~a~lr~~LA~ 104 (292)
+++|..-+..|-...+.+|...+=.. |-.. -..+|+.....-=++.+.-...+. .++.+ ..|...+.=..
T Consensus 138 i~Gle~al~~M~~GE~a~v~i~~~Ya-yG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn 216 (397)
T KOG0543|consen 138 IEGLEIALRMMKVGEVALVTIDPKYA-YGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGN 216 (397)
T ss_pred hHHHHHHHHhcCccceEEEEeCcccc-cCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhh
Confidence 36777777777777777776554111 1111 223454442111011111110111 11222 12333344455
Q ss_pred HHHhhccHHHHHHH----hccCCCCCCCccCChHH-------HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcc
Q 022765 105 LYESEQQWSKAAQM----LSGIDLDSGMRVIDDTF-------RLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 105 i~E~e~~~~~AA~~----L~~I~vEt~~~~~~~~e-------Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
.|-++|+|..|+.. +.-|+-+.+ .+++| |+-.++.+|-.||.-++|..|-.++||+...-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~---~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRS---FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcccc---CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 67778888888876 555655553 23333 888999999999999999999999999876553
No 113
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=44.33 E-value=3.7e+02 Score=27.59 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
..+...++.++-..|++.+|...+...- .+.++ -...|...+.+|...|++..|..+++++...... +.+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal------~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~- 468 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSI------DLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APD- 468 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChH-
Confidence 4455677888888888888888776531 11111 2345777888888888888888888888766543 222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
.+...+.++...++|-+|...|......
T Consensus 469 ---~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 469 ---VYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344577788888888888877775554
No 114
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.03 E-value=98 Score=29.62 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=58.2
Q ss_pred chhHhHHHHHHH-------HHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHh
Q 022765 90 SFEEQVLIIREK-------LADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFIN 161 (292)
Q Consensus 90 ~~E~q~a~lr~~-------LA~i~E~e~~~~~AA~~L~~I-~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~n 161 (292)
+|.+|+-.+++. ||+.+...|+++.+-..|..+ +.|.+- | ..|.+.|+.|+..|+...|....+
T Consensus 140 WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~------E--~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 140 WVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD------E--PAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc------h--HHHHHHHHHHHHcCCchHHHHHHH
Confidence 566777777776 888888889999998888774 555542 2 389999999999999999999999
Q ss_pred hhhhhccc
Q 022765 162 KASFLVSS 169 (292)
Q Consensus 162 K~s~~~~~ 169 (292)
+.+....+
T Consensus 212 ~l~~~~~e 219 (280)
T COG3629 212 QLKKTLAE 219 (280)
T ss_pred HHHHHhhh
Confidence 99997643
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=39.79 E-value=4.1e+02 Score=29.96 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=92.5
Q ss_pred HHHHHHhhcCcc--cchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchh
Q 022765 77 ANYTLAQIQPRV--VSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAV 154 (292)
Q Consensus 77 ~~~~L~~i~~~~--i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~ 154 (292)
.++.-+.+||-| ..=|++|..+-+++|+.+-.+|++..|++-.-. -| .| |+-||-.|..||..
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ------AG-----dK----l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ------AG-----DK----LSAMRALLKSGDTQ 1188 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh------hh-----hH----HHHHHHHHhcCCcc
Confidence 344456677777 456778889999999999999999999875432 11 23 46788888888854
Q ss_pred ----------hHHHHHhhhhhhcccC--chHHH-H--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHH
Q 022765 155 ----------NAEAFINKASFLVSSS--QQEVL-N--LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEE 219 (292)
Q Consensus 155 ----------~Ae~~~nK~s~~~~~~--~~~~L-k--L~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~ 219 (292)
+-|+|+--|+-+.... +|++. | ..||. -.+-+|+=.+|-++|-.- ||-.. -+=+
T Consensus 1189 KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYT-Kgqafd~LanFY~~cAqi-Eiee~---------q~yd 1257 (1416)
T KOG3617|consen 1189 KIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYT-KGQAFDHLANFYKSCAQI-EIEEL---------QTYD 1257 (1416)
T ss_pred eEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhh-cchhHHHHHHHHHHHHHh-hHHHH---------hhhh
Confidence 3456666565555422 33322 1 22332 245567766776665431 11110 0335
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHhcc
Q 022765 220 ALEQALSAAVTCTILAAAGPQRSRVLATLYKD 251 (292)
Q Consensus 220 e~~~~L~~Av~caILApagp~RSrlL~~L~kD 251 (292)
+-+.+|..|..|..=+.+-+...-.|..|..|
T Consensus 1258 Ka~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1258 KAMGALEEAAKCLLKAEQKNMSTTGLDALQED 1289 (1416)
T ss_pred HHhHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 56889999999998888666665555555443
No 116
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.27 E-value=1.6e+02 Score=27.02 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchH--HHHHHHHhccccccCCC
Q 022765 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQR--SRVLATLYKDERCSKLK 258 (292)
Q Consensus 181 ~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApagp~R--SrlL~~L~kDer~~~Lp 258 (292)
..+|++.+.-.+|=|+...-..+... .+..+.+|| ..|+.|..++| |+-| .|.+..+-..+....-+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~------~~eLt~eER-nLlsvayKn~i----~~~R~s~R~l~~~e~~~~~~~~~ 73 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEM------NPELTEEER-NLLSVAYKNVI----GSRRASWRILSSIEQKEENKGNE 73 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT------SS---HHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcc------CCCCCHHHH-HHHHHHHHhcc----ccchHHHHhhhhHhhhhcccchh
Confidence 56899999999999999999999986 467787777 78888888887 6666 56676666655544335
Q ss_pred chhHHHHHHHhh
Q 022765 259 IYPILQKVYLER 270 (292)
Q Consensus 259 ~y~iL~Kmf~~r 270 (292)
....+.+-|...
T Consensus 74 ~~~~~i~~yk~k 85 (236)
T PF00244_consen 74 KQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
No 117
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.11 E-value=1.9e+02 Score=29.00 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
.--..++++.|-.-|-..+|-+-|+. +++...-.+.|+=..+-|-.-|.+++|-..+.-....+..
T Consensus 223 wwWk~Q~gkCylrLgm~r~Aekqlqs--------sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------ 288 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQS--------SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------ 288 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHH--------HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------
Confidence 44567889999999999999999886 3444455667777888888889999998777766666542
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
.+.|..=+|||...-.++-+|.+-|.++...
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4678889999999999999999999999875
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=39.00 E-value=46 Score=20.63 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSG 121 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~ 121 (292)
+.....||.+|-..|+|.+|.+.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHH
Confidence 44567899999999999999988765
No 119
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.69 E-value=1.4e+02 Score=29.26 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=98.4
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHH-----HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF-----RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 101 ~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~e-----Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
.|.++|-..|+|..-.++|..+..---...-+++. -+++|-=-+.+|-+.++--.-.....++..+-.....+-+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 46667777777777777776654422111112333 4677766667777777655555555544444333445555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCC--chHHHHHHHHhcccc
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG--PQRSRVLATLYKDER 253 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~~L~~Av~caILApag--p~RSrlL~~L~kDer 253 (292)
-=.-+.|-..+.-..++|.+|...|.|-+--- +.+|+ ..|.++|+--|..-.|-..| |--
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY-DEsGs-----pRRttCLKYLVLANMLmkS~iNPFD------------ 291 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY-DESGS-----PRRTTCLKYLVLANMLMKSGINPFD------------ 291 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcc-cccCC-----cchhHHHHHHHHHHHHHHcCCCCCc------------
Confidence 55667888888999999999999999876521 11222 34677787666655543322 111
Q ss_pred ccCCCchh-HHHHHHHhhhc---ChhHHHHHHhhcCCcccc
Q 022765 254 CSKLKIYP-ILQKVYLERIL---RKPEIDAFAEELKPHQVI 290 (292)
Q Consensus 254 ~~~Lp~y~-iL~Kmf~~rii---~~~ev~~F~~~L~pHQ~a 290 (292)
.+.-..|+ .=+=.-+..++ ...++.+|+..|+.||-.
T Consensus 292 sQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~ 332 (440)
T KOG1464|consen 292 SQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSN 332 (440)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhcc
Confidence 11111121 11111233333 347888999999888753
No 120
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=38.06 E-value=3.5e+02 Score=30.34 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
+.|...+..+.+.|++..|..+..++..+-.+ +. .++..++.++...++|=+|-..|.....
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN--NS----NYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555666666666666666655554432 11 2333444444445555555555554443
No 121
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=37.79 E-value=3.9e+02 Score=25.97 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHH--HHHHHHHHHHhccCchhhHHHHHhhhhhhcccCch
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRL--SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl--~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~ 172 (292)
..++...+|..+-..|+..+|-++|...--. .++.... ..+.... .+..+|...+...+.+...... +|
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-----~pd~~~~~~~~l~~~~--~l~~~~~~~~~~~~e~~lk~~p--~~ 332 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK-----LGDDRAISLPLCLPIP--RLKPEDNEKLEKLIEKQAKNVD--DK 332 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-----CCCcccchhHHHHHhh--hcCCCChHHHHHHHHHHHHhCC--CC
Confidence 5678888999999999999999998874221 1222211 1222222 2445777788777777665443 34
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 022765 173 EVLNLQYKVCYARILDLKRKFLEAALRYYD 202 (292)
Q Consensus 173 ~~LkL~y~~~~ari~d~~rkFLeAa~~Y~e 202 (292)
++ ..+..++++++...++| +.|+.|.+
T Consensus 333 ~~--~~ll~sLg~l~~~~~~~-~~A~~~le 359 (409)
T TIGR00540 333 PK--CCINRALGQLLMKHGEF-IEAADAFK 359 (409)
T ss_pred hh--HHHHHHHHHHHHHcccH-HHHHHHHH
Confidence 43 57888999999776665 55556777
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.98 E-value=4.4e+02 Score=27.72 Aligned_cols=150 Identities=23% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHH
Q 022765 36 QAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSK 114 (292)
Q Consensus 36 ~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~-~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~ 114 (292)
.|..-++.++.-..-+.-+-+||-.+.+..+.|. +.+.++....+-..| --.-.+-..||++|-.+||-++
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhh
Confidence 3344444444333445556677777777766664 333455543333322 2233455789999999999999
Q ss_pred HHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHH
Q 022765 115 AAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFL 194 (292)
Q Consensus 115 AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFL 194 (292)
|-+. ..||| |-++- -++++--.+-.|++..=|.+|-.|+.|++.+......+++ .--.|+ -..++|-
T Consensus 611 afq~----~ydsy-ryfp~--nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql--miasc~----rrsgnyq 677 (840)
T KOG2003|consen 611 AFQC----HYDSY-RYFPC--NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL--MIASCF----RRSGNYQ 677 (840)
T ss_pred hhhh----hhhcc-cccCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH--HHHHHH----HhcccHH
Confidence 9875 45664 33322 3455555678899999999999999999999876544433 333444 4455666
Q ss_pred HHHHHHHHHHhh
Q 022765 195 EAALRYYDISQI 206 (292)
Q Consensus 195 eAa~~Y~els~~ 206 (292)
.|---|..+-..
T Consensus 678 ka~d~yk~~hrk 689 (840)
T KOG2003|consen 678 KAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHh
Confidence 666667776553
No 123
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=36.96 E-value=43 Score=26.86 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhcc
Q 022765 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED 150 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~ 150 (292)
|+...|+-+|+.|.|.-||..+.++ ......+.--+.+.+-=.-||.+
T Consensus 2 i~d~~Ae~LE~kGl~RRAA~rW~ev-----m~~~~~~~eRe~~~~RR~~Cl~k 49 (90)
T PF06069_consen 2 IHDKKAEELEAKGLWRRAATRWLEV-----MDLAETDKEREWIAQRREYCLRK 49 (90)
T ss_pred cchHHHHHHHHcccHHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHh
No 124
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.14 E-value=3.2e+02 Score=28.77 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC---chHHHHHHHHH
Q 022765 105 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS---QQEVLNLQYKV 181 (292)
Q Consensus 105 i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~---~~~~LkL~y~~ 181 (292)
-|-..+++.+|.++|..++.+|++ +.=..---.|+.-.|...=....|..+-.+..-|+.. =.+...+.|..
T Consensus 417 ~yl~~~qi~eAi~lL~smnW~~~g-----~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 417 QYLRCDQIEEAINLLLSMNWNTMG-----EQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHhcCCHHHHHHHHHhCCccccH-----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 577889999999999999999964 3444455566655555544667777888887777642 24577888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 022765 182 CYARILDLKRKFLEAALRYYDI 203 (292)
Q Consensus 182 ~~ari~d~~rkFLeAa~~Y~el 203 (292)
.|.+.-|+|...=.||.-.
T Consensus 492 ---~V~~~aRRfFhhLLR~~rf 510 (545)
T PF11768_consen 492 ---PVSDLARRFFHHLLRYQRF 510 (545)
T ss_pred ---HHHHHHHHHHHHHHHhhHH
Confidence 7888899998888777654
No 125
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.55 E-value=3.2e+02 Score=24.01 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHH---------HHHHH
Q 022765 74 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK---------CVQIA 144 (292)
Q Consensus 74 ~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~---------~l~i~ 144 (292)
.+....+|+.+.|+..- +..--+-+|-..|+|.+|.++|.++.=+++.-++.+ .-..+ |=.-+
T Consensus 29 ~e~lLdALrvLrP~~~e-------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k-AL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 29 AQAMLDALRVLRPNLKE-------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGK-ALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred HHHHHHHHHHhCCCccc-------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHH-HHHHHHHHhcCChHHHHHH
Confidence 34446788999988753 334456678899999999999999865553212211 22333 33456
Q ss_pred HHHhccCchhhHHHHHhhhhhhcc
Q 022765 145 RLYLEDDDAVNAEAFINKASFLVS 168 (292)
Q Consensus 145 rL~Le~~D~~~Ae~~~nK~s~~~~ 168 (292)
.=.|+.++...|...++.....+.
T Consensus 101 ~~~le~~~~~~a~~Lv~al~g~~~ 124 (153)
T TIGR02561 101 DEVLARDADADAVALVRALLGAQQ 124 (153)
T ss_pred HHHHHhCCCHhHHHHHHHHhcccc
Confidence 668888899999988888765553
No 126
>PF12854 PPR_1: PPR repeat
Probab=34.11 E-value=49 Score=20.94 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccHHHHHHHhccCC
Q 022765 100 EKLADLYESEQQWSKAAQMLSGID 123 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~ 123 (292)
..|-+.|.+.|++++|.+++.+++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCc
Confidence 356778999999999999998764
No 127
>PLN03077 Protein ECB2; Provisional
Probab=33.63 E-value=6.3e+02 Score=27.11 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhh
Q 022765 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (292)
Q Consensus 97 ~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s 164 (292)
.+-..|.+.|-+.|++.+|-+++.+++-.+ +-.|--.+..|...|++..|..+.++..
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d----------~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKD----------AVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----------eeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345678889999999999999999986322 2258888899999999999998888653
No 128
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.41 E-value=2.4e+02 Score=29.55 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=71.8
Q ss_pred HHHHHHHHHH---HHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCch
Q 022765 96 LIIREKLADL---YESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (292)
Q Consensus 96 a~lr~~LA~i---~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~ 172 (292)
+.+++.|-.| +|+.|+.++|-+..-.++ + =-..-+++.+.|+..|=--.|+.+|--+.-.++.++.. |
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh-----~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~--d 591 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLH-----A--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN--D 591 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-----H--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC--C
Confidence 4455555555 677777777766654431 0 11234568888999998889999999988888887763 4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHH
Q 022765 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQ 223 (292)
Q Consensus 173 ~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~~ 223 (292)
+.+. .-.+.++|..++=-.|-|+||+-|..-| ..|..-+|+.
T Consensus 592 p~il----skl~dlydqegdksqafq~~ydsyryfp-----~nie~iewl~ 633 (840)
T KOG2003|consen 592 PAIL----SKLADLYDQEGDKSQAFQCHYDSYRYFP-----CNIETIEWLA 633 (840)
T ss_pred HHHH----HHHHHHhhcccchhhhhhhhhhcccccC-----cchHHHHHHH
Confidence 4432 2346677777777778888888766422 2345566654
No 129
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=31.31 E-value=2.2e+02 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHH
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLE 195 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLe 195 (292)
..|+ -|+-|...++|.+|.-+++... . =+..|-.+|++++...++-.|
T Consensus 76 d~yl-lAksyFD~kEy~RaA~~L~~~~-------s--~~~~FL~lYs~YLa~EKr~~E 123 (142)
T PF04049_consen 76 DKYL-LAKSYFDCKEYDRAAHVLKDCK-------S--PKALFLRLYSRYLAGEKRKEE 123 (142)
T ss_pred HHHH-HHHHHhchhHHHHHHHHHccCC-------C--chHHHHHHHHHHHHHHHHHhh
Confidence 4554 7999999999999998888654 2 245688888888887776444
No 130
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.17 E-value=6.2e+02 Score=26.76 Aligned_cols=131 Identities=18% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHH-HHhhccHHHHHHHhccCCCCCCCccCChHHH
Q 022765 58 LQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADL-YESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136 (292)
Q Consensus 58 l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i-~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eK 136 (292)
|-.+..++++. +...+..++.+|+.+-+-.|+++ =-++-+.+|+.+ +-=-.|+..|-+-|+.-=+=+.+-+-.-+.|
T Consensus 10 LlGlAe~~rt~-~PPkIkk~IkClqA~~~~~is~~-veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 10 LLGLAEHFRTS-GPPKIKKCIKCLQAIFQFQISFL-VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHhhc-CChhHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Q ss_pred HHHHHHHHHHHhccC-chhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHh
Q 022765 137 LSKCVQIARLYLEDD-DAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190 (292)
Q Consensus 137 l~~~l~i~rL~Le~~-D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~ 190 (292)
.+-|==-+.||...+ .+..|...++|+..+...+.-+..|+-|+.-+.-+.|.+
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD 142 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKD 142 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhcc
No 131
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=29.69 E-value=6.7e+02 Score=26.20 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhh
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINK 162 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK 162 (292)
..|.+.|.+.|++.+|-+++.+++--+ +..|--.+.-|...|++..|....++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d----------~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKN----------LISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCC----------eeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456777777777777777777664211 12344555555555555555555554
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=29.59 E-value=1.3e+02 Score=27.57 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
..-|.-+-..|+|.+|.+.+..+-= .+. -+ .+-..-.+.++..|...+|+..|..+.++......+.
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~-~yP--~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDN-RYP--FG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-hCC--CC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 4456677788999999999988722 221 12 2333346788999999999999999999998888764
No 133
>PRK12370 invasion protein regulator; Provisional
Probab=28.58 E-value=6.5e+02 Score=25.69 Aligned_cols=171 Identities=8% Similarity=-0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHH
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~L 175 (292)
+.....++.++...|++.+|...+.. -.--+-.-...|...+.+|+..|++.+|..++.|+..+-....
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~-------Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~---- 406 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQ-------ANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA---- 406 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCH------------HHHHHHHHHHHHHHhcCCCCchHHH
Q 022765 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE------------EALEQALSAAVTCTILAAAGPQRSR 243 (292)
Q Consensus 176 kL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide------------~e~~~~L~~Av~caILApagp~RSr 243 (292)
.+....+.++-..++|=+|-..|.+.....+ |.-.. .+.-++....-...-..|.+.....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHH
Q ss_pred HHHHHhccccccCCCchhHHHHHHHhhhcChhHHHHHHhhc
Q 022765 244 VLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEEL 284 (292)
Q Consensus 244 lL~~L~kDer~~~Lp~y~iL~Kmf~~rii~~~ev~~F~~~L 284 (292)
.|+..|....=...+.+.-|.+..-.+=+.+.....|....
T Consensus 480 ~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 480 LLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
No 134
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=28.43 E-value=1.9e+02 Score=21.05 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCC--HHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 022765 21 YKHILSSVISSND--IVQAKKFIDHMLSDDVPLVVSRQLLQTF 61 (292)
Q Consensus 21 y~~ll~~i~~~~~--~~~l~~~i~~~~~~~v~lv~sR~~l~~~ 61 (292)
++.+|+.+..+.+ .+..+.+++.++++.++-+-.-.+|..+
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678888888775 4899999999999998765544444443
No 135
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.21 E-value=2.7e+02 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCC
Q 022765 73 QKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG 127 (292)
Q Consensus 73 ~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~ 127 (292)
-.+....+|+.+.|+..- +..--+-++-..|+|.+|.++|.++.=++.
T Consensus 28 D~e~lL~ALrvLRP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 28 DAEALLDALRVLRPEFPE-------LDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHhCCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 345557889999998763 334456778899999999999999755443
No 136
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.33 E-value=3.1e+02 Score=28.48 Aligned_cols=129 Identities=21% Similarity=0.202 Sum_probs=84.1
Q ss_pred hhccHHHHH------HHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHH
Q 022765 108 SEQQWSKAA------QMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (292)
Q Consensus 108 ~e~~~~~AA------~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~ 181 (292)
.+..|++|- +-|--+|+=.+ ..+.++ +=+.++......+++|.+...+ .+|+-+.-.
T Consensus 311 d~~~W~QA~~dnp~s~kliPVpvvGF-~dL~~R-----------~K~Q~q~~~~~r~ri~~i~e~v-----~eLqk~~ad 373 (508)
T KOG3091|consen 311 DQRIWRQAMKDNPPSNKLIPVPVVGF-EDLRQR-----------LKVQDQEVKQHRIRINAIGERV-----TELQKHHAD 373 (508)
T ss_pred CHHHHHHHhhcCCCcccccceeccch-HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhh
Confidence 345699987 33444444443 123333 3344566777788888876654 477777778
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhh---hhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccccccC
Q 022765 182 CYARILDLKRKFLEAALRYYDISQIQ---KRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256 (292)
Q Consensus 182 ~~ari~d~~rkFLeAa~~Y~els~~~---~~~~~~~~ide~e~~~~L~~Av~caILApagp~RSrlL~~L~kDer~~~ 256 (292)
..++|.-+|+|-.+.+.|-..|--.. ..+...-..|||+...-|. .+.--+=+| +|=+.-|..||.-.|.+.
T Consensus 374 ~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kld-tll~~ln~P--nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 374 AVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLD-TLLAQLNAP--NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHH-HHHHHhcCh--HHHHHHHHHHHHHHHhhc
Confidence 89999999999999999988875522 1222222347776544443 444455556 888889999998888874
No 137
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=27.29 E-value=1.8e+02 Score=29.18 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccCchhhHHHHHhhhhhhccc-C-c-----------------------------hHHHHHHHHHHHHHHH
Q 022765 139 KCVQIARLYLEDDDAVNAEAFINKASFLVSS-S-Q-----------------------------QEVLNLQYKVCYARIL 187 (292)
Q Consensus 139 ~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~-~-~-----------------------------~~~LkL~y~~~~ari~ 187 (292)
-++|+|..|++.|++..|-+..+|-..++-+ + + ..+|.-+|..-+-.+.
T Consensus 37 ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~ 116 (424)
T KOG2880|consen 37 EILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYD 116 (424)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 4788999999999999999999998887754 1 0 1256667777777777
Q ss_pred HHhhHHHHHHHHHHHH
Q 022765 188 DLKRKFLEAALRYYDI 203 (292)
Q Consensus 188 d~~rkFLeAa~~Y~el 203 (292)
+.+.++++-..+=.++
T Consensus 117 ~~K~k~~~E~~k~le~ 132 (424)
T KOG2880|consen 117 HSKKKNLAERFKKLEV 132 (424)
T ss_pred HHHhhhHHHHHHHhhc
Confidence 7777775554444444
No 138
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=27.14 E-value=16 Score=33.29 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhccccccCCCchhHHHHHHHhhhcCh-hHHHHHHhhcCCcccc
Q 022765 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRK-PEIDAFAEELKPHQVI 290 (292)
Q Consensus 217 de~e~~~~L~~Av~caILApagp~RSrlL~~L~kDer~~~Lp~y~iL~Kmf~~rii~~-~ev~~F~~~L~pHQ~a 290 (292)
+..+=...|++||+-++|-|.+|.--|++.. ++-.+.+=|..--.-+=.-.+-|+| --...|+.-|-.|++.
T Consensus 105 ~~~~p~~~Lk~AIv~TLL~~~Dp~~vDl~Sd--~~i~l~g~PFLygqVlD~~g~~I~~~wRA~ryAdYLi~n~Lq 177 (204)
T PF11873_consen 105 AQTDPKAHLKQAIVTTLLTPDDPSSVDLFSD--KDIPLSGEPFLYGQVLDQDGQPIRWEWRANRYADYLIQNKLQ 177 (204)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCCccccCccC--CCCccCCCceehheeecCCCCeEeeHhHHHHHHHHHHHhhhh
Confidence 3334478999999999999999999999884 6666666674222222223446676 4567888888777654
No 139
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=26.87 E-value=4.3e+02 Score=24.25 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-ccchhHhHHHHHHHHHHHHHhhccH
Q 022765 34 IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPR-VVSFEEQVLIIREKLADLYESEQQW 112 (292)
Q Consensus 34 ~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~-~i~~E~q~a~lr~~LA~i~E~e~~~ 112 (292)
-+.++.|+. -++.|.+-+-.+...++.+.-+-+++-++.+...+|+..+++ .+. ..+=..||.++-..|++
T Consensus 123 ~~A~~~fL~---~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n-----~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 123 QEALRRFLQ---LEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN-----PEILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHH---HcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHhcch
Confidence 345555554 377777788888888888888889999999999999999998 664 44567899999999999
Q ss_pred HHH
Q 022765 113 SKA 115 (292)
Q Consensus 113 ~~A 115 (292)
..|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 887
No 140
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.58 E-value=4.3e+02 Score=26.99 Aligned_cols=172 Identities=20% Similarity=0.128 Sum_probs=101.7
Q ss_pred hcCCChHHHHHHHHHHHHhhcCcccchhHhHHH-HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHH
Q 022765 65 LGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI-IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 143 (292)
Q Consensus 65 l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~-lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i 143 (292)
|+.+.++..+.++..++.....|--.+..++.. ....|+. -.+||-+.|-+.|.-+-.-+ . . .+ .+.++.
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-~-~----~~-~~~~~~ 230 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR--LSNGDARRALNLLELAALSA-E-P----DE-VLILEL 230 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH--hcCchHHHHHHHHHHHHHhc-C-C----Cc-ccCHHH
Confidence 677888888888888766655443322221111 2223333 36789888888876542222 1 1 11 222444
Q ss_pred HHHHhccCch--h-hHHHHHhhhhhhcccC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCH
Q 022765 144 ARLYLEDDDA--V-NAEAFINKASFLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE 218 (292)
Q Consensus 144 ~rL~Le~~D~--~-~Ae~~~nK~s~~~~~~--~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide 218 (292)
+.-++...-. . .-+.+.+=+|.+.-.+ +|++--|+| .||+++.-.+.+-.|+|---+..-.. | .-|+
T Consensus 231 l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyy---lARmi~~GeDp~yiARRlv~~AsEDI---G--lAdP 302 (436)
T COG2256 231 LEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYY---LARMIEAGEDPLYIARRLVRIASEDI---G--LADP 302 (436)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHhhc---c--CCCh
Confidence 4444443211 1 1135566666655443 677777776 58999999999999999887765211 0 0022
Q ss_pred HH------------------HHHHHHHHHHHHhcCCCCchHHHHHHHHhcccc
Q 022765 219 EA------------------LEQALSAAVTCTILAAAGPQRSRVLATLYKDER 253 (292)
Q Consensus 219 ~e------------------~~~~L~~Av~caILApagp~RSrlL~~L~kDer 253 (292)
.- -.-+|.+||++.-+||-+|--=.-...-..|-+
T Consensus 303 ~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY~A~~~A~~d~~ 355 (436)
T COG2256 303 NALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVYTAINAALADAK 355 (436)
T ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 21 124788899999999999987777666666543
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=25.99 E-value=4.3e+02 Score=26.76 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHH
Q 022765 58 LQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRL 137 (292)
Q Consensus 58 l~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl 137 (292)
|-.++..++--+++.....+++-+...-++. -+=..|-..|-+++.|.+|...|.. +++..--.
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--------~L~~tLG~L~~k~~~w~kA~~~lea--------Al~~~~s~ 361 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--------LLLSTLGRLALKNKLWGKASEALEA--------ALKLRPSA 361 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--------hHHHHHHHHHHHhhHHHHHHHHHHH--------HHhcCCCh
Confidence 4455555655667778888889888876655 4567889999999999999999973 33334445
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhhhhhhccc
Q 022765 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (292)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~ 169 (292)
.-|..-+..+.+-||...|+.-.+.+...+..
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 67888999999999999999999988866554
No 142
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=25.74 E-value=3.3e+02 Score=22.95 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCCHHHHH------HHHHHHH
Q 022765 156 AEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALE------QALSAAV 229 (292)
Q Consensus 156 Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~ide~e~~------~~L~~Av 229 (292)
|---++|++..+.-+++.-| |.+|.+.|..+++=+.... ..++++||. .++..|.
T Consensus 23 AYLQLRkAKGYMSVSEsdhL--------------Rdn~FeLc~e~r~~~~~l~-----~~l~~eE~~aL~~a~~a~a~Aa 83 (127)
T PF10799_consen 23 AYLQLRKAKGYMSVSESDHL--------------RDNLFELCREMRDKAPRLK-----LHLDPEEWEALRRAGEALASAA 83 (127)
T ss_pred HHHHHHHHcCccccchhhhH--------------HHHHHHHHHHHHHhhHhhh-----hhcCHHHHHHHHHHHHHHHHHH
Confidence 44446777777754444433 7889999999999887543 667999885 3667788
Q ss_pred HHHhcCC
Q 022765 230 TCTILAA 236 (292)
Q Consensus 230 ~caILAp 236 (292)
+|..=.-
T Consensus 84 VCLMsGh 90 (127)
T PF10799_consen 84 VCLMSGH 90 (127)
T ss_pred HHHHcCC
Confidence 8876443
No 143
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.67 E-value=8.3e+02 Score=25.99 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhhcCcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHh
Q 022765 69 EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL 148 (292)
Q Consensus 69 ~~~~~~~~~~~~L~~i~~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~L 148 (292)
+.+.....+..+++....+. ..........++.++...|++.+|...+...--.. ...-+....+..+...+..++
T Consensus 467 ~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~-~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 467 DPEEAERLAELALAELPLTW---YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA-RQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHHHH
Q ss_pred ccCchhhHHHHHhhhhhhcccCchH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 022765 149 EDDDAVNAEAFINKASFLVSSSQQE--VLNLQYKVCYARILDLKRKFLEAALRYYD 202 (292)
Q Consensus 149 e~~D~~~Ae~~~nK~s~~~~~~~~~--~LkL~y~~~~ari~d~~rkFLeAa~~Y~e 202 (292)
..||+..|+.+..++..+....... .....-....++++-..+++=+|...+.+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
No 144
>PF14904 FAM86: Family of unknown function
Probab=25.43 E-value=68 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=32.5
Q ss_pred chHHHHHHHHhccccccCCCchhHHHHHHHhhhcChhH
Q 022765 239 PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 276 (292)
Q Consensus 239 p~RSrlL~~L~kDer~~~Lp~y~iL~Kmf~~rii~~~e 276 (292)
-.+.++|+..-+++-|.+-|.-..--++|+.++|++.|
T Consensus 45 el~~~IL~~Tv~HPlc~k~Pps~kY~~~FLk~lI~k~E 82 (100)
T PF14904_consen 45 ELQLDILQKTVKHPLCVKYPPSVKYRRCFLKELIKKHE 82 (100)
T ss_pred HHHHHHHHHHhcCcchhhCCCchhHHHHHHHHHHHHHH
Confidence 35567888888999999999888889999999999855
No 145
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.70 E-value=1.1e+02 Score=23.02 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCC
Q 022765 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLD 125 (292)
Q Consensus 95 ~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vE 125 (292)
-+.+|..||+..+...||+.|.+.+.+.+-|
T Consensus 6 qaeirl~~arLrqeH~D~DaaInAmi~~~cD 36 (67)
T COG5481 6 QAEIRLTLARLRQEHADFDAAINAMIATGCD 36 (67)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhCCc
Confidence 3669999999999999999999999874433
No 146
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.63 E-value=5.4e+02 Score=23.62 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCc-cc---chhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHH
Q 022765 74 KEIANYTLAQIQPR-VV---SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 143 (292)
Q Consensus 74 ~~~~~~~L~~i~~~-~i---~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i 143 (292)
.+=+..+++.|..- .. -.|+=..-+.++..-+|-+.|+|.+|.++|..+-=+++ +-.++-|+..+++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~--~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPE--SQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCC--chhHHHHHHHHHHc
Confidence 44444555555321 12 35666667788888999999999999999999866664 34446777776664
No 147
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.02 E-value=95 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHhhhhh
Q 022765 136 RLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (292)
Q Consensus 136 Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~ 165 (292)
-.+-|.+=++.|+++||++.|=.-++=+-.
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g 69 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYAHG 69 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677899999999999999999877765443
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.86 E-value=87 Score=34.58 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHH
Q 022765 104 DLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (292)
Q Consensus 104 ~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~ 180 (292)
.++-.++||..|-++-.. . ..+--.++|.-|+|=-+|.||+.+||.++-|+ +.+++-|.|+
T Consensus 1055 ~mfi~dndwa~aervae~------h---~~~~l~dv~tgqar~aiee~d~~kae~fllra-------nkp~i~l~yf 1115 (1636)
T KOG3616|consen 1055 EMFIHDNDWAAAERVAEA------H---CEDLLADVLTGQARGAIEEGDFLKAEGFLLRA-------NKPDIALNYF 1115 (1636)
T ss_pred HHhhhcccHHHHHHHHHh------h---ChhhhHHHHhhhhhccccccchhhhhhheeec-------CCCchHHHHH
No 149
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=23.59 E-value=83 Score=24.13 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHh
Q 022765 135 FRLSKCVQIARLYLEDDDAVNAEAFIN 161 (292)
Q Consensus 135 eKl~~~l~i~rL~Le~~D~~~Ae~~~n 161 (292)
+-++-|++=++.||++||+++|=.-++
T Consensus 33 ~mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 33 EMAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 467888999999999999999866544
No 150
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=23.44 E-value=8.8e+02 Score=25.48 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhccHHH----HHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 96 LIIREKLADLYESEQQWSK----AAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~----AA~~L~~-I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
..++..|+.++...|++.+ |...+.. +.++. + -...+...+.++++.|++..|..+++++..+..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-------~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~- 316 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-------D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD- 316 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 5566778888888888886 3433332 11111 1 2357778899999999999999999998876433
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 022765 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (292)
Q Consensus 171 ~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~ 206 (292)
+.+. ...+++++...++|-+|...|..+...
T Consensus 317 -~~~a----~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 317 -LPYV----RAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -CHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333 223678888889999998888888764
No 151
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=23.25 E-value=6.5e+02 Score=23.88 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=76.9
Q ss_pred HhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc---------------
Q 022765 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ--------------- 171 (292)
Q Consensus 107 E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~--------------- 171 (292)
-..|||.+|.+-+..|.-.-..+.++ +| .-|..+--+-.++|++.|..++.|=..+.....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~--~q--a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYS--EQ--AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccc--HH--HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 36799999999999987544445555 33 334556667889999999988888776553211
Q ss_pred ---------------------------------hHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 022765 172 ---------------------------------QEVLN--------LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQ 210 (292)
Q Consensus 172 ---------------------------------~~~Lk--------L~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~ 210 (292)
|-..+ -.+-...+|..-.|+.++.|+.|+.++-.+.+
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~-- 198 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP-- 198 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc--
Confidence 11222 23445678999999999999999999988633
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 022765 211 IGDETIDEEALEQALSAAVTC 231 (292)
Q Consensus 211 ~~~~~ide~e~~~~L~~Av~c 231 (292)
..-...+-+..|..|-.-
T Consensus 199 ---~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 199 ---DTSAVREALARLEEAYYA 216 (254)
T ss_pred ---cccchHHHHHHHHHHHHH
Confidence 111233335555555443
No 152
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.97 E-value=1.9e+02 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHhcc
Q 022765 98 IREKLADLYESEQQWSKAAQMLSG 121 (292)
Q Consensus 98 lr~~LA~i~E~e~~~~~AA~~L~~ 121 (292)
+.+...-+|.+.|++.+|.+++..
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~ 107 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIE 107 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHH
Confidence 455666777778888888887765
No 153
>PHA01735 hypothetical protein
Probab=22.96 E-value=1.6e+02 Score=22.70 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=40.0
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHhcCCChHHHHH
Q 022765 23 HILSSVISSN-DIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGRLEPETQKE 75 (292)
Q Consensus 23 ~ll~~i~~~~-~~~~l~~~i~~~~~~~v-~lv~sR~~l~~~~~~l~~l~~~~~~~ 75 (292)
.++..|.+.. ..+||++-++.+-+.++ ++++.-.=|+.+...++++..+..++
T Consensus 20 El~~RiksgeATtaDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~ 74 (76)
T PHA01735 20 ELLSRIKSGEATTADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQE 74 (76)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHh
Confidence 4556665544 46999999999976655 88888888899998888887766543
No 154
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=8.7e+02 Score=25.06 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=104.7
Q ss_pred HhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCC-hHH-HHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccC
Q 022765 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTF-RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (292)
Q Consensus 93 ~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~-~~e-Kl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~ 170 (292)
-=.+.+-.-++-+||.+|+...=-..|... +-| ..+- +.| +.-++==+.|+||-.+-|.+|+..+.|..--=..+
T Consensus 166 ~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~-lrt--AtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~s 242 (493)
T KOG2581|consen 166 LIAAKLYFYLYLSYELEGRLADIRSFLHAL-LRT--ATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAAS 242 (493)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHH--hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccc
Confidence 334555566788889998865554444432 111 1122 333 33334447899999999999999999875332233
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhcCCCCC-CHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 022765 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI-DEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (292)
Q Consensus 171 ~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~~~~~i-de~e~~~~L~~Av~caILApagp~RSrlL~~L~ 249 (292)
++ ..-+|.-...||.--.-+|-+|..+++.---. +|.. .-.=+.+.-+.+|+--.|...=|+||-.
T Consensus 243 nn--e~ARY~yY~GrIkaiqldYssA~~~~~qa~rk------apq~~alGf~q~v~k~~ivv~ll~geiPers~F----- 309 (493)
T KOG2581|consen 243 NN--EWARYLYYLGRIKAIQLDYSSALEYFLQALRK------APQHAALGFRQQVNKLMIVVELLLGEIPERSVF----- 309 (493)
T ss_pred cH--HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh------CcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh-----
Confidence 44 56788888899999999999998888876554 3432 1122234444455555566677877643
Q ss_pred ccccccCCCchhHHHHHH-HhhhcChhHHHHHHhhc
Q 022765 250 KDERCSKLKIYPILQKVY-LERILRKPEIDAFAEEL 284 (292)
Q Consensus 250 kDer~~~Lp~y~iL~Kmf-~~rii~~~ev~~F~~~L 284 (292)
..+... +.|.-.| +.+=.|..++++|...|
T Consensus 310 ~Qp~~~-----ksL~~Yf~Lt~AVr~gdlkkF~~~l 340 (493)
T KOG2581|consen 310 RQPGMR-----KSLRPYFKLTQAVRLGDLKKFNETL 340 (493)
T ss_pred cCccHH-----HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222211 2333344 66677778888887765
No 155
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.37 E-value=7.6e+02 Score=24.94 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=38.3
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhc-----CCCCCC----HHHHHHHHHHHHHHHhcCCC
Q 022765 168 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQI-----GDETID----EEALEQALSAAVTCTILAAA 237 (292)
Q Consensus 168 ~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~~~~~~~-----~~~~id----e~e~~~~L~~Av~caILApa 237 (292)
..+..-...+.|+.=+|=++- |+|-||.+.+..+.....+.- +++.-| -.| ++..-..+|.+|+|-
T Consensus 157 ~~V~~~~is~~YyvGFaylMl--rRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~e--qMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 157 TKVPACHISTYYYVGFAYLML--RRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNE--QMYALLAICLSLCPQ 231 (404)
T ss_pred ccCcchheehHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHH--HHHHHHHHHHHhCCC
Confidence 344555677788876666554 677788777777654322100 111111 233 355567889999984
No 156
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.31 E-value=2.9e+02 Score=21.17 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=54.0
Q ss_pred hhccHHHHHHHhccCCCCCCCccCChH---HHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHH
Q 022765 108 SEQQWSKAAQMLSGIDLDSGMRVIDDT---FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYA 184 (292)
Q Consensus 108 ~e~~~~~AA~~L~~I~vEt~~~~~~~~---eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~a 184 (292)
..||+.+|.+-|... +|......... .-.--.+..+.+...-|++..|-..++.+..+.-+..|....-.-...++
T Consensus 10 ~~~dy~~A~d~L~~~-fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 10 RSGDYSEALDALHRY-FDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HcCCHHHHHHHHHHH-HHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 467888887777653 23322222211 22234678899999999999999999999999988777766555555555
Q ss_pred HHH
Q 022765 185 RIL 187 (292)
Q Consensus 185 ri~ 187 (292)
++.
T Consensus 89 ~l~ 91 (94)
T PF12862_consen 89 NLL 91 (94)
T ss_pred HHh
Confidence 543
No 157
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=21.32 E-value=5.5e+02 Score=22.37 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=47.8
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhhhhcccCc
Q 022765 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (292)
Q Consensus 100 ~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~ 171 (292)
-..|.-+-..|+|.+|.+.|..|--.-.... .--+-.+.++..|...+|+..|....++-....+...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4556777889999999999999843322112 2223456789999999999999999999888887653
No 158
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.01 E-value=2.8e+02 Score=23.86 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=35.7
Q ss_pred HHHHHHhccCchhhHHHHHhhhhhhcccC--chHHHHHHHHHHHHHHHHHhh
Q 022765 142 QIARLYLEDDDAVNAEAFINKASFLVSSS--QQEVLNLQYKVCYARILDLKR 191 (292)
Q Consensus 142 ~i~rL~Le~~D~~~Ae~~~nK~s~~~~~~--~~~~LkL~y~~~~ari~d~~r 191 (292)
..++-|++.|||..|-...+|+..++.+. ...-++--+..+-..+.+.++
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~ 142 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE 142 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999765 455555555555555544443
No 159
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=2.1e+02 Score=31.71 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHhccCchhhHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 022765 143 IARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (292)
Q Consensus 143 i~rL~Le~~D~~~Ae~~~nK~s~~~~~~~~~~LkL~y~~~~ari~d~~rkFLeAa~~Y~els~ 205 (292)
+=+.||++|+|..|-.+.+-. ++-.=.=+..+|..+-+.+.|+.||..|-+.+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 447899999999998887633 333333455678888888899999999998844
No 160
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.18 E-value=5.2e+02 Score=25.43 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHhhc-CcccchhHhHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccC--ch
Q 022765 77 ANYTLAQIQ-PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD--DA 153 (292)
Q Consensus 77 ~~~~L~~i~-~~~i~~E~q~a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~--D~ 153 (292)
|...++.+. |-.++-+.+..+.++.. ..++|..|++++.++ -..++++.+.+.|-.+++-|..=| |+
T Consensus 116 Gte~l~~~~~p~~~~~~~~~~~a~~l~-----n~~~y~aA~~~l~~l-----~~rl~~~~~~~~~~~l~~~y~~WD~fd~ 185 (379)
T PF09670_consen 116 GTERLRELENPYEVFGDREWRRAKELF-----NRYDYGAAARILEEL-----LRRLPGREEYQRYKDLCEGYDAWDRFDH 185 (379)
T ss_pred cchhhhhcCCHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHH-----HHhCCchhhHHHHHHHHHHHHHHHccCH
Q ss_pred hhHHHHHhhhhhhccc---------------------------CchHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHH
Q 022765 154 VNAEAFINKASFLVSS---------------------------SQQEVLNLQYKVCYARILDLKR-----KFLEAALRYY 201 (292)
Q Consensus 154 ~~Ae~~~nK~s~~~~~---------------------------~~~~~LkL~y~~~~ari~d~~r-----kFLeAa~~Y~ 201 (292)
.+|.-+.++.....-. ..+..-++.|....-=+..+.| +|-+|.-|.|
T Consensus 186 ~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlY 265 (379)
T PF09670_consen 186 KEALEYLEKLLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLY 265 (379)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q ss_pred HHHh
Q 022765 202 DISQ 205 (292)
Q Consensus 202 els~ 205 (292)
-+.+
T Consensus 266 R~lE 269 (379)
T PF09670_consen 266 RALE 269 (379)
T ss_pred HHHH
No 161
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=20.08 E-value=2e+02 Score=30.05 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHHhccCchhhHHHHHhhhh
Q 022765 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (292)
Q Consensus 96 a~lr~~LA~i~E~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL~Le~~D~~~Ae~~~nK~s 164 (292)
..+|+.||...-+.|..+||.+++.++=-|-. ...-+.+.=--+..+||.+.|..++..+.|=-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 56789999999999999999999988744432 11122244445678999999999999998853
No 162
>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
Probab=20.03 E-value=65 Score=30.05 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHH---hhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHH
Q 022765 94 QVLIIREKLADLYE---SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL 146 (292)
Q Consensus 94 q~a~lr~~LA~i~E---~e~~~~~AA~~L~~I~vEt~~~~~~~~eKl~~~l~i~rL 146 (292)
=-+.||.+||+..- ...-+++..+++-.+.+|. .+|+++-+++||..+.+
T Consensus 111 GgSTITQQlaKnl~l~~~rs~~RK~~E~~lA~~lE~---~~sK~~ILe~YLN~v~~ 163 (236)
T PRK00056 111 GASTISQQTAKNLFLWPGRSWVRKGLEAPLTLMIEL---VWSKRRILEVYLNIAEW 163 (236)
T ss_pred CcCcHHHHHHHHHcccCCCcHhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhc
Confidence 34678899998765 3445788888888899998 47999999999988744
Done!