BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022766
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 237
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 60 LVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LK 116
LVPY EAW++QK V +E A + P TL++L+H V T+G + E L F +
Sbjct: 30 LVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGENLLFPESWYR 84
Query: 117 DPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKA 176
+ F++Y ERGG+VTYHGPGQLV YPI + ++ +LR +EE +RV + + I A
Sbjct: 85 ENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISA 141
Query: 177 SRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIK 236
G GVWVG+ KL AIG+ V + +++HG ALNV TDL F IVPCG++ + V S++
Sbjct: 142 YPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLE 201
Query: 237 GLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 275
LLG + + A ++ F+EVF L
Sbjct: 202 KLLGRKVPM-------------EEAKARVVAAFAEVFGL 227
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 210
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 60 LVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LK 116
LVPY EAW++QK V +E A + P TL++L+H V T+G + E L F +
Sbjct: 10 LVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGENLLFPESWYR 64
Query: 117 DPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKA 176
+ F++Y ERGG+VTYHGPGQLV YPI + ++ +LR +EE +RV + + I A
Sbjct: 65 ENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISA 121
Query: 177 SRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIK 236
G GVWVG+ KL AIG+ V + +++HG ALNV TDL F IVPCG++ + V S++
Sbjct: 122 YPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLE 181
Query: 237 GLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 275
LLG + + A ++ F+EVF L
Sbjct: 182 KLLGRKVPM-------------EEAKARVVAAFAEVFGL 207
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium
Tuberculosis
Length = 232
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 14/188 (7%)
Query: 61 VPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPF 120
V Y AW Q+ + + A DTL++L+H VYT G E + P
Sbjct: 22 VDYRTAWQLQRELADARVA------GGADTLLLLEHPAVYTAGR--RTETHERPIDGTP- 72
Query: 121 QVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVE 180
V T+RGG++T+HGPGQLV YPII L +D+ Y+R LEE I+V + + A RV+
Sbjct: 73 -VVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLIQVCADLGLHAGRVD 130
Query: 181 GLTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKG 237
G +GVW+ + K+AAIG+RVS+ HG ALN DL F IVPCGI + V S+
Sbjct: 131 GRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSA 190
Query: 238 LLGESQSL 245
LG + ++
Sbjct: 191 ELGRTVTV 198
>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
pdb|1SW7|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant K174n, T175s, A176s
Length = 248
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 98 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 155
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG S +L + D Q R GG VT
Sbjct: 156 DW--SKVVLAYEPVWAIGTGNSSTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVT 213
>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
pdb|1TIM|B Chain B, Structure Of Triose Phosphate Isomerase From Chicken
Muscle
Length = 247
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V +E KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFQETKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTG 105
D + +VL + PV+ +GTG
Sbjct: 155 DW--SKVVLAYEPVWAIGTG 172
>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|B Chain B, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|C Chain C, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
pdb|2I9E|D Chain D, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
Length = 259
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +IF ES +++ K + H + E + EA ++ V ++ KA+ +
Sbjct: 97 RRQIFGESDELIAEK--VCHALESGLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVN 154
Query: 86 DCPDTLIVLQHSPVYTMGTG 105
D + +V+ + PV+ +GTG
Sbjct: 155 DWSN--VVIAYEPVWAIGTG 172
>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SPQ|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG ++ +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGKTKTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVT 212
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSD|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGS-------------EEYLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG S +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGYSLTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPB|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYDPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPC|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYDPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|1TPH|2 Chain 2, 1.8 Angstroms Crystal Structure Of Wild Type Chicken
Triosephosphate Isomerase-Phosphoglycolohydroxamate
Complex
pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
Length = 247
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy
pdb|1TPW|B Chain B, Triosephosphate Isomerase Drinks Water To Keep Healthy
Length = 247
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPU|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPV|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG + +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVT 212
>pdb|2IJD|1 Chain 1, Crystal Structure Of The Poliovirus Precursor Protein 3cd
pdb|2IJD|2 Chain 2, Crystal Structure Of The Poliovirus Precursor Protein 3cd
Length = 644
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 123 YRTERGGEVTYHGPGQLVMYPIINLRNH-KMD---LHWYLRALEEVAIRVLSTFSIKASR 178
Y T+ GE+ + P + V YPIIN + K++ H+ ++E A+ + +K
Sbjct: 178 YFTQSQGEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDF 237
Query: 179 VEGLTGVWVGDQ 190
E + +VG++
Sbjct: 238 EEAIFSKYVGNK 249
>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
pdb|1SW3|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6
Mutant T175v
Length = 248
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 98 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 155
Query: 86 DCPDTLIVLQHSPVYTMGTG 105
D + +VL + PV+ +GTG
Sbjct: 156 DW--SKVVLAYEPVWAIGTG 173
>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge
Mutant K174l, T175w
pdb|1SW0|B Chain B, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge
Mutant K174l, T175w
Length = 248
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 98 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 155
Query: 86 DCPDTLIVLQHSPVYTMGTG 105
D + +VL + PV+ +GTG
Sbjct: 156 DW--SKVVLAYEPVWAIGTG 173
>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SU5|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTGGSEE-------------YLNFDLKDPPFQVYRTERGGEVT 132
D + +VL + PV+ +GTG +L + D Q R GG VT
Sbjct: 155 DW--SKVVLAYEPVWAIGTGNPNTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVT 212
>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SQ7|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 RGKIFCESKQVLYSKTSITHERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNE 85
R +F ES +++ K + H + E + EA +K V ++ KA+ + +
Sbjct: 97 RRHVFGESDELIGQK--VAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK 154
Query: 86 DCPDTLIVLQHSPVYTMGTG 105
D + +VL + PV+ +GTG
Sbjct: 155 DW--SKVVLAYEPVWAIGTG 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,104,469
Number of Sequences: 62578
Number of extensions: 380515
Number of successful extensions: 954
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 20
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)