Query         022766
Match_columns 292
No_of_seqs    147 out of 1200
Neff          5.2 
Searched_HMMs 29240
Date          Mon Mar 25 10:46:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022766hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1w66_A Lipoyltransferase; lipo 100.0 1.6E-60 5.4E-65  433.5  24.6  209   48-282    11-222 (232)
  2 2qhs_A Lipoyltransferase; glob 100.0 4.8E-55 1.6E-59  397.4  23.3  215   46-283    18-235 (237)
  3 2p0l_A Lipoate-protein ligase  100.0 9.6E-38 3.3E-42  290.3  18.5  208   49-275    11-248 (288)
  4 2p5i_A BH3822 protein; PFAM030 100.0 1.1E-37 3.7E-42  289.7  17.2  213   50-284    14-257 (288)
  5 2c8m_A Lipoate-protein ligase  100.0 2.6E-37 8.7E-42  282.9  17.3  202   59-284    10-233 (262)
  6 1vqz_A Lipoate-protein ligase, 100.0 5.8E-35   2E-39  278.0  17.4  194   59-276    19-224 (341)
  7 3a7r_A Lipoate-protein ligase  100.0 5.8E-34   2E-38  270.2  15.4  192   59-278     9-216 (337)
  8 2e5a_A Lipoyltransferase 1; li 100.0 9.7E-32 3.3E-36  255.9  15.8  200   59-278    11-218 (347)
  9 2dxu_A Biotin--[acetyl-COA-car  98.2 1.1E-05 3.7E-10   72.8  11.4  120  127-274    48-169 (235)
 10 2eay_A Biotin [acetyl-COA-carb  98.2 3.1E-05 1.1E-09   69.5  13.6  125  127-274    40-166 (233)
 11 3rkx_A Biotin-[acetyl-COA-carb  98.1 4.3E-05 1.5E-09   71.8  13.1  127  127-274   122-257 (323)
 12 2ej9_A Putative biotin ligase;  98.0 3.5E-05 1.2E-09   69.3  11.1  123  127-274    40-168 (237)
 13 3rux_A BIRA bifunctional prote  98.0 3.5E-05 1.2E-09   70.8  11.2  123  127-274    73-203 (270)
 14 1bia_A BIRA bifunctional prote  97.7 0.00035 1.2E-08   65.2  13.1  125  127-274   118-251 (321)
 15 3bfm_A Biotin protein ligase-l  97.4  0.0018 6.3E-08   57.7  12.0   89  164-274    74-172 (235)
 16 2ddz_A 190AA long hypothetical  88.2     5.2 0.00018   35.1  11.0  109  140-273    68-180 (190)

No 1  
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00  E-value=1.6e-60  Score=433.51  Aligned_cols=209  Identities=36%  Similarity=0.594  Sum_probs=188.8

Q ss_pred             CceeEEEeccCCcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcccccCCCCCCCceEEEccc
Q 022766           48 RKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTER  127 (292)
Q Consensus        48 ~~~~~~~~~~~glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~~l~~~l~~~gi~v~~~~R  127 (292)
                      ++.+.+.++  |+++|+++|++|+.+++.+.      ...+|+|||+|||||||+|++++.+++.    ..||+|++++|
T Consensus        11 ~~~~~~~~l--g~~~Y~~a~~~q~~l~~~~~------~~~~d~l~l~eh~pv~TiG~~q~~~~l~----~~gi~Vvr~~r   78 (232)
T 1w66_A           11 LSAIDVRQL--GTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHERP----IDGTPVVDTDR   78 (232)
T ss_dssp             CSCCEEEEE--EECCHHHHHHHHHHHHHHHH------TTCCCEEEEEECCSEEEECTTCCGGGSC----TTCCCCEECSS
T ss_pred             CceEEEEeC--CCcCHHHHHHHHHHHHHHhh------CCCCCEEEEEecCCEEEeCCCCChhhhc----ccCCeEEEecC
Confidence            356788887  99999999999999999764      2367999999999999999999987653    45899999999


Q ss_pred             CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeC---CCeEEeecceEeccEE
Q 022766          128 GGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVG---DQKLAAIGIRVSQWIA  204 (292)
Q Consensus       128 GG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~---~rKIasIGi~v~r~it  204 (292)
                      ||++|||||||||+|||+||++ +.++++|++.||+++|++|+.|||+|.++++++||||+   ++||||+|+++++|+|
T Consensus        79 GG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v~~~~~rKIaaig~r~~~~vt  157 (232)
T 1w66_A           79 GGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATT  157 (232)
T ss_dssp             SSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSCEEEEEEEEEEETTEE
T ss_pred             CCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEecCCCCCEEEEeeeeeeCCEE
Confidence            9999999999999999999988 88999999999999999999999999999999999999   9999999999999999


Q ss_pred             EEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccccccCCC
Q 022766          205 YHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI  282 (292)
Q Consensus       205 ~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~  282 (292)
                      +||+||||++||++|..|+|||+.++.||||+++++..         ++    ++++++.|+++|++.|+.++...+.
T Consensus       158 ~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~---------~~----~~ev~~~l~~~f~~~~~~~~~~~~~  222 (232)
T 1w66_A          158 LHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----VDEVRATVAAAVCAALDGVLPVGDR  222 (232)
T ss_dssp             EEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----HHHHHHHHHHHHHHHHTTCCC----
T ss_pred             EcceEEecCcChHHhcCccccccCCCceeeeHHHhCCC---------CC----HHHHHHHHHHHHHHHhCcccccccc
Confidence            99999999999999999999999999999999877643         34    7899999999999999987665543


No 2  
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00  E-value=4.8e-55  Score=397.40  Aligned_cols=215  Identities=41%  Similarity=0.746  Sum_probs=190.7

Q ss_pred             ccCceeEEEeccCCcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcccccCC---CCCCCceE
Q 022766           46 ERRKTCECFDLYKELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFD---LKDPPFQV  122 (292)
Q Consensus        46 ~~~~~~~~~~~~~glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~~l~~~---l~~~gi~v  122 (292)
                      ..++++++.++  |+++|.++|++|+.+++.+.     ++..+++|||+|||||||+|++|+.+++..+   +++.||+|
T Consensus        18 ~~~~~~~~~~~--g~~~y~~~~a~~e~l~~~~~-----~g~~~~~L~l~eh~p~~tlG~~q~~~~~~~~~~~l~~~gi~v   90 (237)
T 2qhs_A           18 GSHMEFLVEDL--GLVPYGEAWAYQKRVHREVV-----AGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFEL   90 (237)
T ss_dssp             ---CEEEEEEE--EECCHHHHHHHHHHHHHHHH-----TTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEE
T ss_pred             CCCCeEEEEeC--CCcCHHHHHHHHHHHHHHHh-----cCCCCCEEEEEeCCCEEEeCCCCCchhcccCHHHHHhcCCeE
Confidence            34467888887  99999999999999998863     3567899999999999999999987765333   55679999


Q ss_pred             EEcccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeCCCeEEeecceEecc
Q 022766          123 YRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQW  202 (292)
Q Consensus       123 ~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~~rKIasIGi~v~r~  202 (292)
                      ++++|||++|||||||+|+|||+++++   ++++|++.||+++|++|+.|||+|.+.++++||||+++|||++|+++++|
T Consensus        91 vrr~rGGgavyH~pGqlv~Y~i~~~~~---~~~~~~~~l~~~ii~~L~~lGi~a~~~~g~~dv~v~grKIag~g~~~~~~  167 (237)
T 2qhs_A           91 YWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKEG  167 (237)
T ss_dssp             EECCSSSSEEEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETTEEEEEEEEEEETT
T ss_pred             EEEcCCCEEEEECCCCEEEEEEEECCc---CHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCEEECCcEEEEEeEEeeCC
Confidence            999999999999999999999999986   89999999999999999999999999888999999999999999999999


Q ss_pred             EEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccccccCCC
Q 022766          203 IAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI  282 (292)
Q Consensus       203 it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~  282 (292)
                      +++||++|||++|+++|..|+|||+.++.||||+++++..         ++    ++++++.|+++|++.|+.++.+.++
T Consensus       168 ~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~---------~~----~~ev~~~l~~~f~~~~~~~~~~~~l  234 (237)
T 2qhs_A          168 VSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRK---------VP----MEEAKARVVAAFAEVFGLRPVEGSV  234 (237)
T ss_dssp             EEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSC---------CC----HHHHHHHHHHHHHHHHTCEEC----
T ss_pred             eEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCC---------CC----HHHHHHHHHHHHHHHhCCccccCCC
Confidence            9999999999999999999999999999999999987743         34    7899999999999999998887665


Q ss_pred             c
Q 022766          283 P  283 (292)
Q Consensus       283 ~  283 (292)
                      +
T Consensus       235 t  235 (237)
T 2qhs_A          235 H  235 (237)
T ss_dssp             -
T ss_pred             C
Confidence            4


No 3  
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00  E-value=9.6e-38  Score=290.28  Aligned_cols=208  Identities=11%  Similarity=0.115  Sum_probs=175.0

Q ss_pred             ceeEEEeccC-CcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCC--CCcc-cccCC-CCCCCceEE
Q 022766           49 KTCECFDLYK-ELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTG--GSEE-YLNFD-LKDPPFQVY  123 (292)
Q Consensus        49 ~~~~~~~~~~-glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~--~~~~-~l~~~-l~~~gi~v~  123 (292)
                      .+.++++... +..++...+++|+.+++...     .+..+++|+|.||||+||+|++  +... ..+.+ +++.||+|+
T Consensus        11 ~~~r~i~~~~~~~~d~~~nlAlde~Ll~~~~-----~g~~~~~L~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~vv   85 (288)
T 2p0l_A           11 LPVSIFKDYVTDAQDAEKPFIWTEVFLREIN-----RSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPV   85 (288)
T ss_dssp             SCEEEEECCBCSGGGTTHHHHHHHHHHHHHH-----HSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEE
T ss_pred             CcEEEEECCCCCCCCHHHHHHHHHHHHHhhh-----cCCCCCEEEEecCCCEEEECCCCCCCcchhhhHHHHHHCCCEEE
Confidence            4456666532 77899999999999998863     2456789999999999999999  4432 22222 567899999


Q ss_pred             EcccCCceEEEcCCCeEEEEee-ecC-CCCCCHHHHHHHHHHHHHHHHhhcCCceee-------cCCCceEEeCCCeEEe
Q 022766          124 RTERGGEVTYHGPGQLVMYPII-NLR-NHKMDLHWYLRALEEVAIRVLSTFSIKASR-------VEGLTGVWVGDQKLAA  194 (292)
Q Consensus       124 ~~~RGG~iTyHGPGQLV~YpIl-~L~-~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~-------~~~~~GVwv~~rKIas  194 (292)
                      +++|||++||||||| +.|+++ +.+ ..+.+++++++.++++++++|+.|||++.+       .++.+||||+++|||+
T Consensus        86 RR~sGGgaVyHdpG~-l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~~~~c~g~~Dl~v~grKI~G  164 (288)
T 2p0l_A           86 VRNFGGLAVVADEGI-LNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSINGKKFAG  164 (288)
T ss_dssp             ECTTCCSCEEESTTE-EEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEETTEEEEE
T ss_pred             EEcCCCCeEEECCCc-EEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHHcCCcEEEccccCCCCCCCccEEECCEEEEE
Confidence            999999999999997 589988 665 456899999999999999999999999887       4789999999999999


Q ss_pred             ecceEeccEEEEeeeeeccCCCCC--------CCcc--------ccCCCCCCceeehhhhhcCccccccccCCCCchhhH
Q 022766          195 IGIRVSQWIAYHGLALNVTTDLTP--------FRWI--------VPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI  258 (292)
Q Consensus       195 IGi~v~r~it~HG~ALNV~~DL~~--------F~~I--------vPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      +|+++++++++||++|||++|++.        |..+        .+||+.+.+||||+++++..         ++    +
T Consensus       165 ~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~---------~~----~  231 (288)
T 2p0l_A          165 LAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCP---------MT----V  231 (288)
T ss_dssp             EEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCC---------CC----H
T ss_pred             EeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCC---------CC----H
Confidence            999999999999999999999987        7665        35899989999999988743         33    6


Q ss_pred             HHHHHHHHHHHHHhccc
Q 022766          259 DIAHNSLIKEFSEVFQL  275 (292)
Q Consensus       259 ~~v~~~l~~~F~~~F~~  275 (292)
                      ++++++|+++|++.|+.
T Consensus       232 ~~v~~~l~~~f~~~~~~  248 (288)
T 2p0l_A          232 EDVIDRMLISLKQVGFN  248 (288)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            88999999999999997


No 4  
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00  E-value=1.1e-37  Score=289.71  Aligned_cols=213  Identities=12%  Similarity=0.133  Sum_probs=173.6

Q ss_pred             eeEEEeccCCc----ccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCC--CCcc-cccCC-CCCCCce
Q 022766           50 TCECFDLYKEL----VPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTG--GSEE-YLNFD-LKDPPFQ  121 (292)
Q Consensus        50 ~~~~~~~~~gl----v~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~--~~~~-~l~~~-l~~~gi~  121 (292)
                      +.++++.  +.    .++...+++|+.+++...     .+..+++|+|.||||+||+|++  +... ..+.+ +++.||+
T Consensus        14 ~~~~i~~--~~~~~~~d~~~nlA~de~Ll~~~~-----~g~~~~~l~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~   86 (288)
T 2p5i_A           14 PWRFLDH--TSFGPTFQALQSFAYDDTLCTSIG-----KSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHD   86 (288)
T ss_dssp             CCEEEEE--SSCCTTSCHHHHHHHHHHHHHHHT-----TTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCE
T ss_pred             cEEEEEC--CCcCCCCCHHHhHHHHHHHHHHhh-----cCCCCCEEEEecCCCEEEECCCcCCCccHhhhHHHHHHcCCe
Confidence            4566664  44    589999999999998752     3456899999999999999998  4332 11222 5567999


Q ss_pred             EEEcccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceee-------cCCCceEEeCCCeEEe
Q 022766          122 VYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASR-------VEGLTGVWVGDQKLAA  194 (292)
Q Consensus       122 v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~-------~~~~~GVwv~~rKIas  194 (292)
                      |++++|||++|||||||+ .|+++..+..+.+++++++.++++++++|+.|||++.+       .++.+||||+++|||+
T Consensus        87 vvRR~sGGgaVyHdpG~l-~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~~c~g~~dl~v~grKI~G  165 (288)
T 2p5i_A           87 VIVRNSGGLAVVLDSGIL-NLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAG  165 (288)
T ss_dssp             EEEESSCCCCEEECTTEE-EEEEEEECCTTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEETTEEEEE
T ss_pred             EEEEcCCCceEEECCCcE-EEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEeccccCCCCCCccEEECCEEEEE
Confidence            999999999999999986 99999877667799999999999999999999999987       4789999999999999


Q ss_pred             ecceEeccEEEEeeeeeccCCCCC--------CCcc-cc-------CCCCCCceeehhhhhcCccccccccCCCCchhhH
Q 022766          195 IGIRVSQWIAYHGLALNVTTDLTP--------FRWI-VP-------CGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI  258 (292)
Q Consensus       195 IGi~v~r~it~HG~ALNV~~DL~~--------F~~I-vP-------CGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      +|.++++++++||++|||++|++.        |..+ .|       ||+.+..||||+++++..         ++    +
T Consensus       166 ~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~---------~~----~  232 (288)
T 2p5i_A          166 ISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQP---------HN----V  232 (288)
T ss_dssp             EEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSC---------CC----H
T ss_pred             EEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCC---------CC----H
Confidence            999999999999999999999988        7663 44       599888999999988743         34    6


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCch
Q 022766          259 DIAHNSLIKEFSEVFQLEIHNKAIPL  284 (292)
Q Consensus       259 ~~v~~~l~~~F~~~F~~~~~~~~~~~  284 (292)
                      ++++++|+++|++. +.++.+.+++-
T Consensus       233 ~~v~~~l~~~f~~~-~~~~~~~~lt~  257 (288)
T 2p5i_A          233 SDVLLKALMTLQQH-GASLLTESLSA  257 (288)
T ss_dssp             HHHHHHHHHHHHHT-TCCCEECCCCH
T ss_pred             HHHHHHHHHHHHHh-CCCceecCCCH
Confidence            88999999999985 44555555443


No 5  
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00  E-value=2.6e-37  Score=282.94  Aligned_cols=202  Identities=18%  Similarity=0.300  Sum_probs=161.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcc-cccCC-CCCCCceEEEcccCCceEEEcC
Q 022766           59 ELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGP  136 (292)
Q Consensus        59 glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~-~l~~~-l~~~gi~v~~~~RGG~iTyHGP  136 (292)
                      +..++...+++|+.+++...     .+. +++|+|.||||+||+|++|+.. .++.+ +++.||+|++++|||++|||||
T Consensus        10 ~~~~~~~nlA~ee~Ll~~~~-----~~~-~~~l~l~~~~p~v~lG~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavyhd~   83 (262)
T 2c8m_A           10 TPGNTRMSLAYDEAIYRSFQ-----YGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDL   83 (262)
T ss_dssp             CTTCHHHHHHHHHHHHHHCC-----TTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECT
T ss_pred             CCCCHHHHHHHHHHHHHccc-----CCC-CcEEEEEcCCCEEEECCCCChhHHhHHHHHHhcCCcEEEECCCCceEEeCC
Confidence            77899999999999988742     222 6899999999999999999854 33322 5567999999999999999999


Q ss_pred             CCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCC----------ceeecCCCceEEeCCCeEEeecceEeccEEEE
Q 022766          137 GQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSI----------KASRVEGLTGVWVGDQKLAAIGIRVSQWIAYH  206 (292)
Q Consensus       137 GQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI----------~a~~~~~~~GVwv~~rKIasIGi~v~r~it~H  206 (292)
                      ||| .|+++..+. +.++++.++.+++.++++|+.|||          .+... +.+||||+++|||++|++++++.++|
T Consensus        84 G~l-~ys~i~~~~-~~~~~~~y~~l~~~ii~~l~~lGi~~~~~~~~~~~a~~~-g~~dv~v~g~Ki~G~aqr~~~~~~lh  160 (262)
T 2c8m_A           84 GDL-NFSVVRSSD-DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVN-KKTDIMAGEKKIMGAAGAMRKGAKLW  160 (262)
T ss_dssp             TEE-EEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSS-BTTSEEETTEEEEEEEEEEETTEEEE
T ss_pred             CcE-EEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccccccCCcceEC-CcCcEEECCeEEEEeeeEEeCCEEEE
Confidence            998 888884333 468986678999999999999999          66654 68999999999999999999999999


Q ss_pred             eeeeeccCCCCCCCc---cccCCCCCCc-------eeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccc
Q 022766          207 GLALNVTTDLTPFRW---IVPCGIQNRH-------VGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLE  276 (292)
Q Consensus       207 G~ALNV~~DL~~F~~---IvPCGL~~~~-------vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~  276 (292)
                      |.+||+++|++.|..   +.|||+.++.       ||||++++ .          ++    +++++++|+++|++.|+.+
T Consensus       161 hgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~----------~~----~~~v~~~l~~~~~~~~~~~  225 (262)
T 2c8m_A          161 HAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-D----------VS----IDEVRNALIRGFSETLHID  225 (262)
T ss_dssp             EEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-C----------CC----HHHHHHHHHHHHHHHHTCE
T ss_pred             EEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-C----------CC----HHHHHHHHHHHHHHHhCCC
Confidence            999999999998853   4579998887       89999877 2          23    6889999999999999987


Q ss_pred             cccCCCch
Q 022766          277 IHNKAIPL  284 (292)
Q Consensus       277 ~~~~~~~~  284 (292)
                      +.+..++-
T Consensus       226 ~~~~~lt~  233 (262)
T 2c8m_A          226 FREDTITE  233 (262)
T ss_dssp             EEECCCCH
T ss_pred             ceecCCCH
Confidence            66555543


No 6  
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00  E-value=5.8e-35  Score=277.96  Aligned_cols=194  Identities=15%  Similarity=0.186  Sum_probs=163.3

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcc-cccCC-CCCCCceEEEcccCCceEEEcC
Q 022766           59 ELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGP  136 (292)
Q Consensus        59 glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~-~l~~~-l~~~gi~v~~~~RGG~iTyHGP  136 (292)
                      +..+=...+++++.+++...       ..+++|+|.||||+||+|++|+.. .++.+ +++.||+|+|++|||++|||||
T Consensus        19 ~~~d~~~nlAlee~Ll~~~~-------~~~~~L~l~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~sGGgaVyHd~   91 (341)
T 1vqz_A           19 HSNDTAFNIALEEYAFKHLL-------DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDL   91 (341)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT-------TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECT
T ss_pred             CCCCHHHHHHHHHHHHHhcC-------CCCCEEEEEcCCCEEEECCCCChhhhhCHHHHHHcCCcEEEECCCCCeEEECC
Confidence            34555666888888887631       257899999999999999999854 33333 5567999999999999999999


Q ss_pred             CCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeCCCeEEeecceEeccEEEEeeeeeccCCC
Q 022766          137 GQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDL  216 (292)
Q Consensus       137 GQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~~rKIasIGi~v~r~it~HG~ALNV~~DL  216 (292)
                      ||| .|+++..+....++ + ++.+++.++++|+.|||+|... +++||||+++|||++|.+++++.++||.+||+++|+
T Consensus        92 G~l-~ys~i~~~~~~~~~-~-y~~l~~~ii~aL~~lGi~a~~~-gr~Di~v~grKIsG~Aqr~~~~~~lhhgtllvd~Dl  167 (341)
T 1vqz_A           92 NNL-NYTIISKEDENKAF-D-FKSFSTPVINTLAQLGVKAEFT-GRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDL  167 (341)
T ss_dssp             TEE-EEEEEEECCTTCCC-S-HHHHHHHHHHHHHHTTCCEEEE-TTTEEEETTEEEEEEEEEEETTEEEEEEEEESSCCT
T ss_pred             Cce-EEEEEEcCcccCCc-c-HHHHHHHHHHHHHHcCCeEEEC-CCCCEEEeCEEEEEEEEEEECCEEEEEEEEEecCCH
Confidence            995 99999887643355 4 5789999999999999999875 589999999999999999999999999999999999


Q ss_pred             CCCC---ccccCCCCCCc-------eeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccc
Q 022766          217 TPFR---WIVPCGIQNRH-------VGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLE  276 (292)
Q Consensus       217 ~~F~---~IvPCGL~~~~-------vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~  276 (292)
                      +.|.   .+.|||+.++.       ||||+++++..         ++    +++++++|+++|.+.|+..
T Consensus       168 ~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~---------~~----~~~v~~~l~~~f~~~~~~~  224 (341)
T 1vqz_A          168 SVLANALKVSKDKFESKGVKSVRARVTNIINELPKK---------IT----VEKFRDLLLEYMKKEYPEM  224 (341)
T ss_dssp             THHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSC---------CC----HHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhCCCccchhhcccccchhhheeHHHhcCCC---------CC----HHHHHHHHHHHHHHhcCCC
Confidence            9986   45699998765       89999887742         34    7889999999999999876


No 7  
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00  E-value=5.8e-34  Score=270.23  Aligned_cols=192  Identities=11%  Similarity=0.177  Sum_probs=157.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcc-cccCC-CCCCCceEEEcccCCceEEEcC
Q 022766           59 ELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGP  136 (292)
Q Consensus        59 glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~-~l~~~-l~~~gi~v~~~~RGG~iTyHGP  136 (292)
                      +..+=...+++++.+++...       ..+++|++.||||+||+|++|+.. .++.+ +++.||+|++++|||++|||||
T Consensus         9 ~~~d~~~nlA~ee~Ll~~~~-------~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~   81 (337)
T 3a7r_A            9 DSYDPWFNLAVEECIFRQMP-------ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDL   81 (337)
T ss_dssp             CCCCHHHHHHHHHHHHHHCC-------TTCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECT
T ss_pred             CCCCHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCEEEECCCCChhHhhCHHHHHHcCCeEEEEcCCCccEEECC
Confidence            33455567888888887631       235799999999999999999854 33332 5567999999999999999999


Q ss_pred             CCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEe---CC-CeEEeecceEeccEEEEeeeeec
Q 022766          137 GQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWV---GD-QKLAAIGIRVSQWIAYHGLALNV  212 (292)
Q Consensus       137 GQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv---~~-rKIasIGi~v~r~it~HG~ALNV  212 (292)
                      ||| .|+++..+.. .+   | +.+++.++++|+.|||+|... +++||||   ++ +|||++|.++++++++||.+||+
T Consensus        82 G~l-~ys~i~~~~~-~~---y-~~l~~~ii~~L~~lGi~a~~~-g~~di~v~~~~g~rKIsG~Aqr~~~~~~lhhgtll~  154 (337)
T 3a7r_A           82 GNT-CFTFMAGKPE-YD---K-TISTSIVLNALNALGVSAEAS-GRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLL  154 (337)
T ss_dssp             TEE-EEEEEEETTT-CC---H-HHHHHHHHHHHHHTTCCEEEE-TTTEEEECCTTSCEEEEEEEEEECSSEEEEEEEEES
T ss_pred             CcE-EEEEEECCcc-cC---H-HHHHHHHHHHHHHcCCeEEEC-CCCcEEEEeCCCceEEEEEEEEEECCEEEEEEEEEe
Confidence            999 9999988753 33   5 789999999999999999876 4799999   88 99999999999999999999999


Q ss_pred             cCCCCCC---CccccCCCCCCce-------eehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccccc
Q 022766          213 TTDLTPF---RWIVPCGIQNRHV-------GSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIH  278 (292)
Q Consensus       213 ~~DL~~F---~~IvPCGL~~~~v-------TSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~  278 (292)
                      ++|++.|   ..+.|||+.++.+       |||+++++.          ++    +++++++|+++|++.|+.++.
T Consensus       155 ~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~----------~~----~~~v~~~l~~~f~~~~~~~~~  216 (337)
T 3a7r_A          155 NADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPG----------IT----HEQVCEAITEAFFAHYGERVE  216 (337)
T ss_dssp             SCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTT----------CC----HHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCC----------CC----HHHHHHHHHHHHHHHcCCCCc
Confidence            9998764   4677999987654       666665542          33    788999999999999997643


No 8  
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=99.97  E-value=9.7e-32  Score=255.86  Aligned_cols=200  Identities=16%  Similarity=0.202  Sum_probs=157.3

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecCceeeccCCCCcc-cccCC-CCCCCceEEEcccCCceEEEcC
Q 022766           59 ELVPYNEAWSWQKNVVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGP  136 (292)
Q Consensus        59 glv~Y~~a~~lQ~~l~~~~~~~~~~~~~~~dtLlllEHpPVyTlGr~~~~~-~l~~~-l~~~gi~v~~~~RGG~iTyHGP  136 (292)
                      +..+=...+++++.+++..      ....+++|+|.||||+||+|++|+.. .++.+ +++.||+|+|++|||++|||||
T Consensus        11 ~~~d~~~nlAlee~Ll~~~------~~~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~   84 (347)
T 2e5a_A           11 ISNDVYHNLAVEDWIHDHM------NLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDM   84 (347)
T ss_dssp             SCCCHHHHHHHHHHHHHHC------CCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECT
T ss_pred             CCCCHHHHHHHHHHHHHhc------ccCCCCEEEEEcCCCEEEECCCCCchhhhCHHHHHHCCCeEEEECCCCCcEEECC
Confidence            3445566788899888763      22347899999999999999999854 33333 5678999999999999999999


Q ss_pred             CCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcC--CceeecCCCceEEeCC-CeEEeecceEeccEEEEeeeeecc
Q 022766          137 GQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFS--IKASRVEGLTGVWVGD-QKLAAIGIRVSQWIAYHGLALNVT  213 (292)
Q Consensus       137 GQLV~YpIl~L~~~~~~v~~yv~~LE~~vI~~L~~~G--I~a~~~~~~~GVwv~~-rKIasIGi~v~r~it~HG~ALNV~  213 (292)
                      || +.|+++..+.. .+   | ..+++.++++|+.+|  |+|+.. +++||||++ +|||++|.++++++++|+.+||++
T Consensus        85 G~-l~ys~i~~~~~-~~---~-~~~~~~ii~~L~~lG~~i~a~~~-g~~di~v~g~~KIsG~Aq~~~~~~~lhhgtll~~  157 (347)
T 2e5a_A           85 GN-INLTFFTTKKK-YD---R-MENLKLVVRALKAVHPHLDVQAT-KRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCG  157 (347)
T ss_dssp             TE-EEEEEEECGGG-CC---H-HHHHHHHHHHHHHHSTTCCEEEC-TTSCEEETTTEEEECEEEEECSSCEEEEEEEESS
T ss_pred             Cc-EEEEEEecccc-CC---H-HHHHHHHHHHHHHhCCceEEEEC-CCCcEEECCCcEEEEEeEEeeCCeEEEEEEEEEe
Confidence            99 79999987642 34   3 357999999999999  999876 589999998 999999999999999988899999


Q ss_pred             CCCCC---CCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcccccc
Q 022766          214 TDLTP---FRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIH  278 (292)
Q Consensus       214 ~DL~~---F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~  278 (292)
                      +|++.   +..+.|||+.++.++|+.+-......   ..+.++    +++++++|+++|.+.|+.++.
T Consensus       158 ~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~---~~~~~~----~~~v~~~l~~~f~~~~~~~~~  218 (347)
T 2e5a_A          158 TDGTFLSSLLKSPYQGIRSNATASTPALVKNLME---KDPTLT----CEVVINAVATEYATSHQIDNH  218 (347)
T ss_dssp             CCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHH---HCTTCC----HHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCHHHHHHHHccCchhhhhhcccchHHhhccHHH---hCCCCC----HHHHHHHHHHHHHHHhCCCCc
Confidence            99864   45567999998877777643221100   002244    788999999999999986543


No 9  
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=98.19  E-value=1.1e-05  Score=72.75  Aligned_cols=120  Identities=20%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             cCCceEEEcCCCeEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHhhcCCceeecCCCceEEeCCCeEEeecceEeccEE
Q 022766          127 RGGEVTYHGPGQLVMYPIINLRNH--KMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIA  204 (292)
Q Consensus       127 RGG~iTyHGPGQLV~YpIl~L~~~--~~~v~~yv~~LE~~vI~~L~~~GI~a~~~~~~~GVwv~~rKIasIGi~v~r~it  204 (292)
                      |.|..++--||.|.+-.++.....  ....-.++-.+  ++.++|+.+|++...+. .++|+++++|||+|-+.......
T Consensus        48 R~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~l~~al--Av~~al~~~~~~~~iKW-PNDi~~~gkKl~GIL~E~~~~~v  124 (235)
T 2dxu_A           48 ALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV--GVVETLKEFSIDGRIKW-PNDVLVNYKKIAGVLVEGKGDKI  124 (235)
T ss_dssp             GGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHH--HHHHHHHHTTCCCEEET-TTEEEETTEEEEEEEEEECSSCE
T ss_pred             CCcCcccCCCCCeEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHHhCCCeeeeC-CCEEEECCEEEEEEEEeecCCEE
Confidence            566777777786655555543211  11222344444  78889998899998887 48999999999999887765556


Q ss_pred             EEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          205 YHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       205 ~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                      .=|+.|||+.+   |    |-    . .|||..+.+..         ++.    +++...++++|.+.+.
T Consensus       125 ViGiGiNv~~~---~----p~----~-atsL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~  169 (235)
T 2dxu_A          125 VLGIGLNVNNK---V----PN----G-ATSMKLELGSE---------VPL----LSVFRSLITNLDRLYL  169 (235)
T ss_dssp             EEEEEECSSSC---C----CT----T-BCCHHHHHTSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCC---C----CC----c-hhhHHHhhCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence            78999999986   2    21    1 89998877643         343    4445566666665553


No 10 
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=98.15  E-value=3.1e-05  Score=69.48  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=76.4

Q ss_pred             cCCceEEEcCCCeEEEEeeecCC-CCCCHHHHHHHHHHHHHHHHhhc-CCceeecCCCceEEeCCCeEEeecceEeccEE
Q 022766          127 RGGEVTYHGPGQLVMYPIINLRN-HKMDLHWYLRALEEVAIRVLSTF-SIKASRVEGLTGVWVGDQKLAAIGIRVSQWIA  204 (292)
Q Consensus       127 RGG~iTyHGPGQLV~YpIl~L~~-~~~~v~~yv~~LE~~vI~~L~~~-GI~a~~~~~~~GVwv~~rKIasIGi~v~r~it  204 (292)
                      |.|..++--||.|.+-.++.... .....-.++-.+  ++.++|+.+ |++...+. .++|+++++|||+|-+.......
T Consensus        40 R~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~l--Av~~al~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~~~~  116 (233)
T 2eay_A           40 RLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGL--SVSEALEEITEIPFSLKW-PNDVYFQEKKVSGVLCELSKDKL  116 (233)
T ss_dssp             ---------CCEEEEEEEECTTTCCCTTHHHHHHHH--HHHHHHHHHHCCCCEEET-TTEEEETTEEEEEEEEEEETTEE
T ss_pred             CCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHH--HHHHHHHHhcCCCccEeC-cceEEECCeEEEEEEEEeecCCC
Confidence            66777777788655555554331 112333444444  788899875 99988887 48999999999999887754434


Q ss_pred             EEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          205 YHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       205 ~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                      .=|+.|||+.+  .    .|-.+. ...|||..+.+..         ++.    +++...++++|.+.+.
T Consensus       117 ViGIGiNv~~~--~----~p~~~~-~~atsL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~  166 (233)
T 2eay_A          117 IVGIGINVNQR--E----IPEEIK-DRATTLYEITGKD---------WDR----KEVLLKVLKRISENLK  166 (233)
T ss_dssp             EEEEEEECSCC--C----CCTTTT-TTBCCHHHHHSSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcccc--c----Ccchhh-hhhhhhHHhHCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence            77999999972  2    243443 3689999877643         343    4455566666666553


No 11 
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=98.06  E-value=4.3e-05  Score=71.80  Aligned_cols=127  Identities=15%  Similarity=0.120  Sum_probs=76.6

Q ss_pred             cCCceEEEcCC-CeEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHhhc-CCceeecCCCceEEeCCCeEEeecceEec-
Q 022766          127 RGGEVTYHGPG-QLVMYPIINLRNH--KMDLHWYLRALEEVAIRVLSTF-SIKASRVEGLTGVWVGDQKLAAIGIRVSQ-  201 (292)
Q Consensus       127 RGG~iTyHGPG-QLV~YpIl~L~~~--~~~v~~yv~~LE~~vI~~L~~~-GI~a~~~~~~~GVwv~~rKIasIGi~v~r-  201 (292)
                      |.|..++--|| .|.+-.++.....  ....-.++-.+  ++.++|+.+ |++...+. .|+|+++++|||+|=+...- 
T Consensus       122 R~GR~W~Sp~G~~L~~S~~l~p~~~~~~~~~lsl~~av--Av~~al~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~~  198 (323)
T 3rkx_A          122 RFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIAL--GIRDAIQHFSQDEVKVKW-PNDIYIDNGKVCGFLTEMVAN  198 (323)
T ss_dssp             --------CTTCEEEEEEEECCCCCTTSGGGHHHHHHH--HHHHHHHTTCSSCEEEET-TTEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCeeeCCCCCCEEEEEEecCCCCHHHHHHHHHHHHH--HHHHHHHHhcCCceEEeC-CCeEEECCEEEEEEEeEeeeC
Confidence            77888888888 4544444433221  12222344444  788899876 88888887 59999999999999776532 


Q ss_pred             --c--EEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          202 --W--IAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       202 --~--it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                        .  ...=|+.|||+.+...|    |-.++. .+|||.++.+..         ++.    +++...++++|.+.+.
T Consensus       199 ~~~~~~vViGIGiNv~~~~~~~----p~~l~~-~atsL~~~~g~~---------~~r----~~ll~~ll~~l~~~~~  257 (323)
T 3rkx_A          199 NDGIEAIICGIGINLTQQLENF----DESIRH-RATSIQLHDKNK---------LDR----YQFLERLLQEIEKRYN  257 (323)
T ss_dssp             SSSEEEEEEEEEEECSCCGGGS----CTTTGG-GBCCSGGGCSSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEEEecCCcccC----CcccCc-ceeeHhhhhCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence              2  24569999999864333    455543 689999877643         443    4445566666665543


No 12 
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=98.01  E-value=3.5e-05  Score=69.28  Aligned_cols=123  Identities=20%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHH-HHHHHHHHhhc-CCceeecCCCceEEeCC----CeEEeecceEe
Q 022766          127 RGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL-EEVAIRVLSTF-SIKASRVEGLTGVWVGD----QKLAAIGIRVS  200 (292)
Q Consensus       127 RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~L-E~~vI~~L~~~-GI~a~~~~~~~GVwv~~----rKIasIGi~v~  200 (292)
                      |.|..++.-||.|.+-.++...  ..++ ..+..+ --++.++|+.+ |++...+. .|+|++++    +|||+|=+...
T Consensus        40 R~Gr~W~Sp~G~l~~S~~l~p~--~~~~-~~l~l~~~lAv~~al~~~~~~~~~iKW-PNDi~~~g~~~~kKl~GIL~E~~  115 (237)
T 2ej9_A           40 RWGRVWYSDEGGLYFSMVLDSK--LYNP-KVINLLVPICIIEVLKNYVDKELGLKF-PNDIMVKVNDNYKKLGGILTELT  115 (237)
T ss_dssp             GGGCBCCCCTTSEEEEEEEETT--SSCH-HHHHHHHHHHHHHHHTTTCCSCEEEET-TTEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCeeeCCCCCeEEEeEEccc--cCCH-HHHHHHHHHHHHHHHHHhhCCCcceeC-CCEEEECCCcCccEeeEEEEecC
Confidence            5566667777877666666531  2233 222222 23678899876 88888887 48999999    99999988776


Q ss_pred             ccEEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          201 QWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       201 r~it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                      .....=|+.|||+.+   |    |-.+. ...|||.++.+..         ++.    +++...++++|.+.+.
T Consensus       116 ~~~vViGiGiNv~~~---~----p~~l~-~~atsL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~  168 (237)
T 2ej9_A          116 DDYMIIGIGINVNNQ---I----RNEIR-EIAISLKEITGKE---------LDK----VEILSNFLKTFESYLE  168 (237)
T ss_dssp             SSEEEEEEEECSSSC---C----CGGGG-GTBCCHHHHHSSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEEecCCC---C----cchhh-hhhccHhHhHCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence            667788999999986   2    33332 3689999877643         343    4455666666666553


No 13 
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=98.01  E-value=3.5e-05  Score=70.76  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=80.6

Q ss_pred             cCCceEEEcCC-CeEEEEeeecCCCC---CCHHHHHHHHHHHHHHHHh---hc-CCceeecCCCceEEeCCCeEEeecce
Q 022766          127 RGGEVTYHGPG-QLVMYPIINLRNHK---MDLHWYLRALEEVAIRVLS---TF-SIKASRVEGLTGVWVGDQKLAAIGIR  198 (292)
Q Consensus       127 RGG~iTyHGPG-QLV~YpIl~L~~~~---~~v~~yv~~LE~~vI~~L~---~~-GI~a~~~~~~~GVwv~~rKIasIGi~  198 (292)
                      |.|..++--|| .|.+-.++......   ...-.++-.+  ++.++|+   .+ |++...+. .|+|+++++|||+|=+.
T Consensus        73 R~GR~W~Sp~G~~L~~S~~l~~~~~~~~~~~~lsl~~~l--Av~~aL~~~~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E  149 (270)
T 3rux_A           73 RHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGL--AVLDSVAPLIAVPPAETGLKW-PNDVLARGGKLAGILAE  149 (270)
T ss_dssp             GGGCEECCCTTSEEEEEEEEECTTSCGGGTHHHHHHHHH--HHHHHHGGGSSSCCSSCEEET-TTEEEETTEEEEEEEEE
T ss_pred             CCCCeeeCCCCCCeEEEEEEccCCCChHHHHHHHHHHHH--HHHHHHHHhcccCCCceEEEC-CCeEEECCEEEEEEEEE
Confidence            55677777778 55555555543211   1122333334  7888898   65 88888887 48999999999999877


Q ss_pred             EeccEEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          199 VSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       199 v~r~it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                      .......=|+.|||+.+...|        +...+|||..+.+..          +    .+++...++++|.+.+.
T Consensus       150 ~~~~~vViGIGiNv~~~~~~~--------~~~~atSL~~~~~~~----------~----r~~ll~~ll~~l~~~~~  203 (270)
T 3rux_A          150 VAQPFVVLGVGLNVTQAPEEV--------DPDATSLLDLGVAAP----------D----RNRIASRLLRELEARII  203 (270)
T ss_dssp             EETTEEEEEEEEESSCCHHHH--------CTTBCCTGGGTCSSC----------C----HHHHHHHHHHHHHHHHH
T ss_pred             eeCCeEEEEEEEeccCCcccc--------CchhhccHHHhcCCC----------C----HHHHHHHHHHHHHHHHH
Confidence            655556779999999863222        124689998765532          3    34555666666666553


No 14 
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=97.74  E-value=0.00035  Score=65.16  Aligned_cols=125  Identities=17%  Similarity=0.152  Sum_probs=69.6

Q ss_pred             cCCceEEEcCC-CeEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHhhcCC-ceeecCCCceEEeCCCeEEeecceEec-
Q 022766          127 RGGEVTYHGPG-QLVMYPIINLRNH--KMDLHWYLRALEEVAIRVLSTFSI-KASRVEGLTGVWVGDQKLAAIGIRVSQ-  201 (292)
Q Consensus       127 RGG~iTyHGPG-QLV~YpIl~L~~~--~~~v~~yv~~LE~~vI~~L~~~GI-~a~~~~~~~GVwv~~rKIasIGi~v~r-  201 (292)
                      |.|..++--|| .|.+-.++.....  ....-.++-.+  ++.++|+.+|+ +...+. .|+|+++++|||+|=+.... 
T Consensus       118 R~gr~W~Sp~g~~l~~S~~l~~~~~~~~~~~l~l~~~~--av~~al~~~~~~~~~iKW-PNDi~~~g~Kl~GIL~E~~~~  194 (321)
T 1bia_A          118 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGI--VMAEVLRKLGADKVRVKW-PNDLYLQDRKLAGILVELTGK  194 (321)
T ss_dssp             -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHH--HHHHHHHHTTCTTCEEET-TTEEEETTEEEEEEEEEEEC-
T ss_pred             CCCCcccCCCCCCEEEEEEEccCCChHHHhhHHHHHHH--HHHHHHHHhCCCCccEeC-cceeeECCeeEEEEEEEeeec
Confidence            67888888888 5655555544321  12222344444  78899999988 577777 58999999999999776532 


Q ss_pred             ----cEEEEeeeeeccCCCCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          202 ----WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       202 ----~it~HG~ALNV~~DL~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                          ....=|+.|||+.+. .|    |-.++ ..+|||.+ .+.         .++.    +++...++++|.+.+.
T Consensus       195 ~~~~~~~viGiGiNv~~~~-~~----~~~~~-~~atsL~~-~~~---------~~~r----~~ll~~ll~~l~~~~~  251 (321)
T 1bia_A          195 TGDAAQIVIGAGINMAMRR-VE----ESVVN-QGWITLQE-AGI---------NLDR----NTLAAMLIRELRAALE  251 (321)
T ss_dssp             ---CEEEEEEEEEECCC-----------------CCCTTT-TTC---------CCCH----HHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEEecCCCc-cc----cchhc-cccccHHh-cCC---------CCCH----HHHHHHHHHHHHHHHH
Confidence                235679999999864 23    22232 35789987 432         2443    3444556666655543


No 15 
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=97.36  E-value=0.0018  Score=57.72  Aligned_cols=89  Identities=9%  Similarity=-0.081  Sum_probs=61.2

Q ss_pred             HHHHHHhhcCC-c--eeecCCCceEEeCCCeEEeecceEec-------cEEEEeeeeeccCCCCCCCccccCCCCCCcee
Q 022766          164 VAIRVLSTFSI-K--ASRVEGLTGVWVGDQKLAAIGIRVSQ-------WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVG  233 (292)
Q Consensus       164 ~vI~~L~~~GI-~--a~~~~~~~GVwv~~rKIasIGi~v~r-------~it~HG~ALNV~~DL~~F~~IvPCGL~~~~vT  233 (292)
                      ++.++|+.++. +  ...+. .|+|+++++|||+|=+....       ....=|+.|||+...  .     -++. ...|
T Consensus        74 Av~~aL~~~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~--~-----~~~~-~~at  144 (235)
T 3bfm_A           74 GFQNALGALAPPEVAVHLDW-NGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEG--D-----GGET-PDET  144 (235)
T ss_dssp             HHHHHHHHHSCTTCCEEECT-TSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCC--S-----SCCC-CCSC
T ss_pred             HHHHHHHHhcCCCcceEecC-CCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCC--c-----cccc-cccc
Confidence            67888887754 4  67776 58999999999999776542       256789999999763  1     2232 3589


Q ss_pred             ehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhcc
Q 022766          234 SIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ  274 (292)
Q Consensus       234 SL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~  274 (292)
                      |+.++.+..         ++.    +++...++++|.+.+.
T Consensus       145 sL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~  172 (235)
T 3bfm_A          145 ALYAEGCAD---------VAA----PRLLESWARHCLHWIN  172 (235)
T ss_dssp             CGGGTTCTT---------CCH----HHHHHHHHHHHHHHHH
T ss_pred             chhHhhCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence            998876632         343    4455666666665554


No 16 
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=88.17  E-value=5.2  Score=35.07  Aligned_cols=109  Identities=25%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             EEEEeeecCCCCCCHH-HHHHH--HHHHHHHHHhhcCCceeecCCCceEEeCCCeEE-eecceEeccEEEEeeeeeccCC
Q 022766          140 VMYPIINLRNHKMDLH-WYLRA--LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLA-AIGIRVSQWIAYHGLALNVTTD  215 (292)
Q Consensus       140 V~YpIl~L~~~~~~v~-~yv~~--LE~~vI~~L~~~GI~a~~~~~~~GVwv~~rKIa-sIGi~v~r~it~HG~ALNV~~D  215 (292)
                      +.-.|+.--.. .+++ .|.++  |-..+-+.|.++|++..|.-  .++++++||+. ||...-.-..-.| +++||+.+
T Consensus        68 mlhFIvEhFD~-~dl~~~y~rQRLlv~i~kE~L~~~g~~~~R~G--DDLy~~~~KLSVSIAt~s~vS~kIH-~GiNV~s~  143 (190)
T 2ddz_A           68 MVHYILELFWH-PDILLASSLQKLLIARLVELLWNYGIEASRRG--DDIYVNGRKLSISIATVSPVSIKIH-IGLNVKTV  143 (190)
T ss_dssp             EEEEEEEECSC-CCHHHHHHHHHHHHHHHHHHHHTTTCCEEEET--TEEEETTEECEEEEEEECSSCEEEE-EEEESCCS
T ss_pred             ceEEEEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--CeeeECCCEEEEEEEecCcchheEE-EEEeeccc
Confidence            34455532221 3554 35544  45566678889999999886  49999999983 3433222334445 68999987


Q ss_pred             CCCCCccccCCCCCCceeehhhhhcCccccccccCCCCchhhHHHHHHHHHHHHHHhc
Q 022766          216 LTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVF  273 (292)
Q Consensus       216 L~~F~~IvPCGL~~~~vTSL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F  273 (292)
                      -      +|-   +....+|.+++-            +..++++.+...+++++.++-
T Consensus       144 g------~P~---~V~aigL~dlGi------------~i~~~~~~i~~~y~~E~~~Ie  180 (190)
T 2ddz_A          144 G------VPP---GVDAIGLEELGI------------DPTEFMERSAKALVEEIEKVR  180 (190)
T ss_dssp             S------CCS---SSCBCCHHHHTC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             C------CCC---CccccCHHHcCC------------CHHHHHHHHHHHHHHHHHHHH
Confidence            3      232   244667766543            223456667777777776543


Done!