Query 022768
Match_columns 292
No_of_seqs 150 out of 2111
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-54 3E-59 364.5 26.9 277 2-278 121-397 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-45 7.7E-50 328.5 24.8 273 14-289 416-690 (693)
3 KOG0727 26S proteasome regulat 100.0 1.6E-42 3.5E-47 279.1 21.9 269 9-277 132-400 (408)
4 PTZ00454 26S protease regulato 100.0 1.3E-41 2.9E-46 302.3 29.4 274 3-276 116-389 (398)
5 KOG0652 26S proteasome regulat 100.0 2.1E-42 4.6E-47 279.6 20.4 275 6-280 145-419 (424)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 7.3E-42 1.6E-46 303.7 24.7 260 25-287 504-783 (802)
7 KOG0729 26S proteasome regulat 100.0 5.4E-42 1.2E-46 278.0 19.4 276 2-277 147-422 (435)
8 KOG0728 26S proteasome regulat 100.0 3.8E-41 8.2E-46 270.9 22.8 274 5-278 120-393 (404)
9 PRK03992 proteasome-activating 100.0 2.5E-40 5.4E-45 295.6 28.7 276 5-280 104-379 (389)
10 KOG0738 AAA+-type ATPase [Post 100.0 1.3E-40 2.8E-45 282.2 22.3 269 18-291 198-490 (491)
11 KOG0651 26S proteasome regulat 100.0 1.3E-41 2.8E-46 280.8 15.4 285 1-286 102-386 (388)
12 PTZ00361 26 proteosome regulat 100.0 4.7E-40 1E-44 294.1 26.4 276 3-278 154-429 (438)
13 KOG0734 AAA+-type ATPase conta 100.0 1.8E-40 4E-45 290.8 21.3 244 27-274 299-542 (752)
14 KOG0726 26S proteasome regulat 100.0 1E-40 2.2E-45 273.4 17.0 269 10-278 163-431 (440)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 3.4E-39 7.3E-44 286.8 23.5 268 22-290 180-515 (802)
16 KOG0736 Peroxisome assembly fa 100.0 1.4E-38 3E-43 289.2 24.4 263 21-287 661-946 (953)
17 TIGR01242 26Sp45 26S proteasom 100.0 8.7E-38 1.9E-42 278.1 27.4 268 6-273 96-363 (364)
18 COG1223 Predicted ATPase (AAA+ 100.0 8.3E-39 1.8E-43 258.3 18.7 243 24-274 113-356 (368)
19 KOG0731 AAA+-type ATPase conta 100.0 3.1E-37 6.7E-42 285.0 24.1 248 27-275 306-555 (774)
20 TIGR01243 CDC48 AAA family ATP 100.0 3.4E-36 7.3E-41 289.4 27.8 264 25-290 446-730 (733)
21 TIGR01241 FtsH_fam ATP-depende 100.0 5E-36 1.1E-40 276.6 25.5 251 24-275 47-297 (495)
22 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-37 4.8E-42 254.5 14.6 263 24-292 125-438 (439)
23 COG0465 HflB ATP-dependent Zn 100.0 2.4E-35 5.3E-40 268.1 22.4 256 19-275 137-392 (596)
24 CHL00176 ftsH cell division pr 100.0 5.4E-35 1.2E-39 273.0 24.3 249 25-274 176-424 (638)
25 CHL00195 ycf46 Ycf46; Provisio 100.0 2.1E-34 4.6E-39 261.4 26.9 248 22-277 218-467 (489)
26 COG0464 SpoVK ATPases of the A 100.0 4.7E-34 1E-38 264.2 25.5 251 24-277 234-487 (494)
27 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-33 3.1E-38 239.0 22.0 261 25-291 85-382 (386)
28 KOG0735 AAA+-type ATPase [Post 100.0 4.3E-33 9.3E-38 251.6 23.4 225 29-256 664-888 (952)
29 PRK10733 hflB ATP-dependent me 100.0 4.6E-32 1E-36 255.9 26.0 250 25-275 145-394 (644)
30 TIGR03689 pup_AAA proteasome A 100.0 9.8E-32 2.1E-36 243.7 25.5 256 18-275 168-480 (512)
31 TIGR01243 CDC48 AAA family ATP 100.0 7.3E-31 1.6E-35 252.6 26.4 263 25-290 171-457 (733)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.1E-30 6.8E-35 254.3 23.1 216 52-276 1616-1880(2281)
33 KOG0730 AAA+-type ATPase [Post 100.0 3E-30 6.6E-35 232.5 20.1 255 27-292 180-440 (693)
34 KOG0740 AAA+-type ATPase [Post 100.0 2.4E-30 5.2E-35 226.8 17.3 269 17-291 138-425 (428)
35 KOG0732 AAA+-type ATPase conta 100.0 9.5E-28 2.1E-32 227.8 17.6 256 22-280 255-532 (1080)
36 PLN00020 ribulose bisphosphate 100.0 1.4E-26 3.1E-31 198.5 19.5 205 27-236 110-330 (413)
37 KOG0741 AAA+-type ATPase [Post 99.9 1.1E-26 2.3E-31 204.4 14.5 249 27-278 214-495 (744)
38 PF05496 RuvB_N: Holliday junc 99.9 7.9E-24 1.7E-28 170.7 13.4 204 20-253 12-229 (233)
39 KOG0735 AAA+-type ATPase [Post 99.9 6E-23 1.3E-27 186.3 20.0 247 32-290 408-671 (952)
40 COG2255 RuvB Holliday junction 99.9 3.2E-22 6.8E-27 164.5 18.9 226 21-276 15-254 (332)
41 KOG0736 Peroxisome assembly fa 99.9 1.8E-22 3.9E-27 184.8 19.0 223 64-291 429-677 (953)
42 COG2256 MGS1 ATPase related to 99.9 7.2E-22 1.6E-26 169.8 18.0 221 21-286 13-251 (436)
43 PRK00080 ruvB Holliday junctio 99.9 2.7E-21 5.8E-26 170.1 20.9 224 23-276 16-253 (328)
44 PRK07003 DNA polymerase III su 99.9 2.1E-21 4.6E-26 180.5 20.9 196 19-252 3-227 (830)
45 KOG0744 AAA+-type ATPase [Post 99.9 3.7E-22 8E-27 166.6 13.3 242 31-276 141-417 (423)
46 KOG0743 AAA+-type ATPase [Post 99.9 1.4E-21 3E-26 170.7 17.2 209 27-245 196-412 (457)
47 CHL00181 cbbX CbbX; Provisiona 99.9 8.3E-21 1.8E-25 162.9 20.5 212 32-256 23-257 (287)
48 TIGR02881 spore_V_K stage V sp 99.9 5.9E-21 1.3E-25 162.6 19.3 213 30-256 4-241 (261)
49 PRK14956 DNA polymerase III su 99.9 5.3E-21 1.1E-25 171.6 19.7 210 19-270 5-243 (484)
50 TIGR02880 cbbX_cfxQ probable R 99.9 6.1E-21 1.3E-25 163.8 19.1 211 33-256 23-256 (284)
51 TIGR00635 ruvB Holliday juncti 99.9 1E-20 2.2E-25 165.1 20.3 215 30-274 2-230 (305)
52 PRK12323 DNA polymerase III su 99.9 2.8E-21 6.1E-26 177.5 17.0 201 19-251 3-231 (700)
53 PRK14960 DNA polymerase III su 99.9 1.7E-20 3.6E-25 172.9 19.9 211 19-271 2-241 (702)
54 PRK14961 DNA polymerase III su 99.9 2.4E-20 5.3E-25 165.8 19.6 211 19-271 3-242 (363)
55 PRK07994 DNA polymerase III su 99.9 2.6E-20 5.6E-25 173.6 20.5 211 19-271 3-242 (647)
56 PRK14958 DNA polymerase III su 99.9 1.4E-20 3.1E-25 172.8 18.1 214 19-274 3-245 (509)
57 PF00004 AAA: ATPase family as 99.9 8.9E-21 1.9E-25 144.7 13.9 131 69-202 1-132 (132)
58 PRK14949 DNA polymerase III su 99.9 4.1E-20 8.9E-25 175.0 21.0 200 19-250 3-225 (944)
59 PRK14962 DNA polymerase III su 99.9 5E-20 1.1E-24 167.6 19.8 211 21-273 3-242 (472)
60 PRK06645 DNA polymerase III su 99.8 9.4E-20 2E-24 166.5 20.0 223 19-274 8-257 (507)
61 KOG0742 AAA+-type ATPase [Post 99.8 1.5E-19 3.2E-24 155.4 19.6 238 27-276 350-615 (630)
62 PRK08691 DNA polymerase III su 99.8 1.3E-19 2.8E-24 168.4 19.2 220 19-274 3-245 (709)
63 PRK14964 DNA polymerase III su 99.8 1.4E-19 3E-24 164.1 18.8 209 21-271 2-239 (491)
64 PRK13342 recombination factor 99.8 2.3E-19 4.9E-24 162.4 19.9 207 22-275 2-221 (413)
65 PRK14951 DNA polymerase III su 99.8 2E-19 4.3E-24 167.4 19.1 211 19-271 3-247 (618)
66 PRK14957 DNA polymerase III su 99.8 2.9E-19 6.4E-24 164.2 20.0 212 19-272 3-243 (546)
67 TIGR02902 spore_lonB ATP-depen 99.8 1.3E-19 2.9E-24 167.9 17.6 226 17-271 50-330 (531)
68 PRK14969 DNA polymerase III su 99.8 2E-19 4.3E-24 166.3 17.9 211 19-271 3-242 (527)
69 PRK04195 replication factor C 99.8 5.1E-19 1.1E-23 163.0 20.5 211 23-270 5-222 (482)
70 PLN03025 replication factor C 99.8 4.5E-19 9.7E-24 155.4 18.8 206 22-268 3-218 (319)
71 KOG0989 Replication factor C, 99.8 2.8E-19 6E-24 148.7 15.6 203 21-264 25-244 (346)
72 PRK14963 DNA polymerase III su 99.8 1.1E-18 2.3E-23 160.2 20.6 206 23-271 5-238 (504)
73 TIGR02639 ClpA ATP-dependent C 99.8 8.1E-19 1.7E-23 169.0 19.6 230 21-275 171-431 (731)
74 COG0466 Lon ATP-dependent Lon 99.8 8.8E-20 1.9E-24 166.8 12.1 168 32-217 323-509 (782)
75 PRK14959 DNA polymerase III su 99.8 1.7E-18 3.7E-23 160.2 19.4 212 20-270 4-241 (624)
76 TIGR02928 orc1/cdc6 family rep 99.8 6.2E-18 1.3E-22 151.2 22.6 226 28-276 11-277 (365)
77 COG2812 DnaX DNA polymerase II 99.8 3.7E-19 8E-24 160.9 14.4 216 19-270 3-241 (515)
78 PRK08451 DNA polymerase III su 99.8 2.9E-18 6.2E-23 157.0 20.0 207 21-269 3-238 (535)
79 PRK14952 DNA polymerase III su 99.8 4.2E-18 9.2E-23 158.0 21.1 212 23-269 4-240 (584)
80 PRK12402 replication factor C 99.8 5.6E-18 1.2E-22 149.8 21.1 212 23-272 6-248 (337)
81 PRK05563 DNA polymerase III su 99.8 2.9E-18 6.2E-23 159.7 19.9 209 20-270 4-241 (559)
82 PRK07764 DNA polymerase III su 99.8 4.8E-18 1.1E-22 163.2 21.0 212 22-268 5-241 (824)
83 PRK09111 DNA polymerase III su 99.8 5.5E-18 1.2E-22 158.0 20.8 222 15-272 7-256 (598)
84 PRK14965 DNA polymerase III su 99.8 3.1E-18 6.7E-23 160.1 19.0 209 19-269 3-240 (576)
85 PRK13341 recombination factor 99.8 2.9E-18 6.2E-23 162.9 19.0 228 21-286 17-260 (725)
86 KOG2004 Mitochondrial ATP-depe 99.8 5.9E-19 1.3E-23 160.8 13.4 168 32-217 411-597 (906)
87 PRK05896 DNA polymerase III su 99.8 3.5E-18 7.5E-23 157.4 18.5 208 20-269 4-240 (605)
88 TIGR02397 dnaX_nterm DNA polym 99.8 4E-18 8.8E-23 151.8 18.5 211 19-271 1-240 (355)
89 PRK07133 DNA polymerase III su 99.8 8.8E-18 1.9E-22 157.6 21.3 216 19-270 5-240 (725)
90 PRK14953 DNA polymerase III su 99.8 6.5E-18 1.4E-22 154.6 19.8 217 19-271 3-242 (486)
91 PHA02544 44 clamp loader, smal 99.8 7.9E-18 1.7E-22 147.6 19.5 211 21-268 10-226 (316)
92 PTZ00112 origin recognition co 99.8 9.8E-18 2.1E-22 157.3 20.6 222 32-277 755-1010(1164)
93 PRK14955 DNA polymerase III su 99.8 3.2E-18 6.9E-23 154.0 16.9 220 19-270 3-254 (397)
94 PRK00411 cdc6 cell division co 99.8 2.9E-17 6.2E-22 148.4 23.2 236 18-275 16-284 (394)
95 PRK11034 clpA ATP-dependent Cl 99.8 6E-18 1.3E-22 161.4 19.3 223 28-275 182-435 (758)
96 PRK06305 DNA polymerase III su 99.8 2.3E-17 5E-22 150.0 21.5 210 19-270 4-243 (451)
97 PRK14970 DNA polymerase III su 99.8 1.1E-17 2.3E-22 149.7 19.0 216 19-271 4-231 (367)
98 TIGR00763 lon ATP-dependent pr 99.8 1.1E-17 2.4E-22 161.9 20.2 166 33-216 321-505 (775)
99 PRK06647 DNA polymerase III su 99.8 1.8E-17 3.9E-22 153.9 20.3 216 19-270 3-241 (563)
100 PRK06893 DNA replication initi 99.8 4.3E-17 9.4E-22 136.0 19.5 212 25-271 9-228 (229)
101 KOG2028 ATPase related to the 99.8 7.7E-18 1.7E-22 143.1 14.8 223 21-288 127-383 (554)
102 TIGR00362 DnaA chromosomal rep 99.8 2.6E-17 5.7E-22 148.9 19.4 221 27-274 105-338 (405)
103 PRK00149 dnaA chromosomal repl 99.8 1.9E-17 4E-22 151.6 18.4 221 26-274 116-350 (450)
104 PRK14954 DNA polymerase III su 99.8 3.1E-17 6.7E-22 153.2 19.9 220 19-270 3-254 (620)
105 PRK14948 DNA polymerase III su 99.8 5.8E-17 1.3E-21 152.1 21.4 199 19-249 3-226 (620)
106 KOG0991 Replication factor C, 99.8 1.4E-17 3.1E-22 133.5 14.6 191 24-253 19-219 (333)
107 PRK08903 DnaA regulatory inact 99.8 7.3E-17 1.6E-21 134.8 19.6 202 26-271 12-224 (227)
108 PRK08084 DNA replication initi 99.8 1E-16 2.2E-21 134.2 20.3 210 25-271 15-234 (235)
109 PRK00440 rfc replication facto 99.8 5.7E-17 1.2E-21 142.3 19.6 212 22-273 7-226 (319)
110 PRK14950 DNA polymerase III su 99.8 5.8E-17 1.2E-21 152.3 19.9 215 20-270 4-242 (585)
111 TIGR03345 VI_ClpV1 type VI sec 99.8 9.3E-17 2E-21 156.0 21.6 224 22-271 177-429 (852)
112 PF05673 DUF815: Protein of un 99.8 9E-17 1.9E-21 131.6 17.5 196 24-248 19-244 (249)
113 PRK14088 dnaA chromosomal repl 99.8 6.4E-17 1.4E-21 146.9 18.0 223 26-274 99-333 (440)
114 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.3E-16 2.9E-21 133.1 17.9 205 26-270 9-225 (226)
115 PRK13407 bchI magnesium chelat 99.7 1.2E-16 2.7E-21 139.1 18.3 225 27-278 3-311 (334)
116 PRK14086 dnaA chromosomal repl 99.7 2.4E-16 5.1E-21 145.5 21.0 193 67-275 315-517 (617)
117 PRK07940 DNA polymerase III su 99.7 1.5E-16 3.2E-21 141.8 17.9 184 30-245 3-213 (394)
118 COG1224 TIP49 DNA helicase TIP 99.7 5.6E-16 1.2E-20 131.5 19.9 145 125-289 291-449 (450)
119 PRK08727 hypothetical protein; 99.7 1E-15 2.2E-20 128.1 21.3 207 26-272 13-230 (233)
120 COG1474 CDC6 Cdc6-related prot 99.7 1.1E-15 2.5E-20 134.9 22.0 227 29-279 14-271 (366)
121 CHL00081 chlI Mg-protoporyphyr 99.7 4E-16 8.6E-21 136.1 18.6 230 22-278 7-327 (350)
122 PRK14971 DNA polymerase III su 99.7 6.3E-16 1.4E-20 145.2 20.8 207 21-269 6-242 (614)
123 PF00308 Bac_DnaA: Bacterial d 99.7 2.8E-16 6.2E-21 130.0 15.2 200 27-254 3-217 (219)
124 CHL00095 clpC Clp protease ATP 99.7 9.2E-16 2E-20 149.6 20.6 205 26-256 173-404 (821)
125 PRK10787 DNA-binding ATP-depen 99.7 7.7E-16 1.7E-20 148.1 19.7 220 33-271 323-580 (784)
126 PRK14087 dnaA chromosomal repl 99.7 8.9E-16 1.9E-20 139.6 19.1 192 67-274 142-349 (450)
127 PRK05642 DNA replication initi 99.7 3.4E-15 7.3E-20 125.0 19.9 182 66-271 45-233 (234)
128 TIGR03346 chaperone_ClpB ATP-d 99.7 1.7E-15 3.8E-20 148.0 21.0 209 22-256 163-399 (852)
129 TIGR02640 gas_vesic_GvpN gas v 99.7 1.1E-15 2.5E-20 130.0 16.5 192 65-276 20-260 (262)
130 TIGR02030 BchI-ChlI magnesium 99.7 2E-15 4.4E-20 131.7 18.0 221 30-278 2-314 (337)
131 TIGR02903 spore_lon_C ATP-depe 99.7 2.2E-15 4.7E-20 142.0 19.0 225 19-274 141-431 (615)
132 PRK10865 protein disaggregatio 99.7 8.9E-16 1.9E-20 149.6 16.3 172 22-219 168-357 (857)
133 PRK12422 chromosomal replicati 99.7 6.2E-15 1.3E-19 133.7 19.8 223 26-274 105-344 (445)
134 PRK06620 hypothetical protein; 99.7 5.9E-15 1.3E-19 121.5 17.3 196 27-270 11-213 (214)
135 PRK09087 hypothetical protein; 99.7 4.7E-15 1E-19 123.1 16.5 201 25-273 14-222 (226)
136 PRK09112 DNA polymerase III su 99.7 4.5E-15 9.8E-20 130.7 17.2 195 22-249 13-244 (351)
137 COG0593 DnaA ATPase involved i 99.7 9.2E-15 2E-19 129.0 18.8 225 24-276 79-316 (408)
138 TIGR01650 PD_CobS cobaltochela 99.7 1.4E-15 3.1E-20 130.7 12.3 139 65-217 63-234 (327)
139 PRK07471 DNA polymerase III su 99.6 2E-14 4.3E-19 127.3 18.7 190 23-247 10-240 (365)
140 COG0464 SpoVK ATPases of the A 99.6 4E-14 8.6E-19 131.4 21.1 234 52-290 4-246 (494)
141 COG2607 Predicted ATPase (AAA+ 99.6 5.3E-14 1.1E-18 113.6 17.8 198 23-249 51-277 (287)
142 TIGR03015 pepcterm_ATPase puta 99.6 8.4E-14 1.8E-18 119.3 20.5 193 66-274 43-267 (269)
143 PRK05564 DNA polymerase III su 99.6 7.9E-14 1.7E-18 122.0 18.0 175 30-243 2-188 (313)
144 PRK13531 regulatory ATPase Rav 99.6 1.5E-13 3.2E-18 123.6 18.5 218 32-278 20-288 (498)
145 TIGR00390 hslU ATP-dependent p 99.6 1E-13 2.3E-18 122.2 17.2 244 33-278 13-435 (441)
146 TIGR02442 Cob-chelat-sub cobal 99.6 9E-14 1.9E-18 131.9 18.0 221 30-278 2-309 (633)
147 PRK07399 DNA polymerase III su 99.6 2.2E-13 4.7E-18 118.4 18.7 185 30-249 2-225 (314)
148 PRK05342 clpX ATP-dependent pr 99.6 1.9E-13 4.1E-18 122.6 18.7 221 34-256 73-381 (412)
149 cd00009 AAA The AAA+ (ATPases 99.6 1.1E-13 2.5E-18 106.8 14.6 140 36-201 2-150 (151)
150 PRK05201 hslU ATP-dependent pr 99.6 1.4E-13 3.1E-18 121.5 15.7 244 33-278 16-437 (443)
151 PRK11034 clpA ATP-dependent Cl 99.6 2.1E-13 4.5E-18 130.6 18.2 168 33-217 459-667 (758)
152 COG0714 MoxR-like ATPases [Gen 99.6 2.8E-13 6.2E-18 119.3 17.6 215 34-276 26-299 (329)
153 smart00350 MCM minichromosome 99.5 1.5E-13 3.4E-18 127.3 16.2 226 34-275 205-506 (509)
154 KOG1969 DNA replication checkp 99.5 5.6E-13 1.2E-17 122.6 19.4 214 24-258 263-520 (877)
155 TIGR00368 Mg chelatase-related 99.5 2.9E-13 6.2E-18 124.2 17.6 216 28-271 188-497 (499)
156 TIGR00764 lon_rel lon-related 99.5 2.9E-13 6.4E-18 127.3 17.3 137 126-275 218-393 (608)
157 TIGR00602 rad24 checkpoint pro 99.5 3.8E-13 8.2E-18 125.9 17.6 227 21-271 73-353 (637)
158 TIGR02639 ClpA ATP-dependent C 99.5 5.8E-13 1.3E-17 128.6 19.4 165 32-217 454-663 (731)
159 COG0542 clpA ATP-binding subun 99.5 5.7E-13 1.2E-17 125.5 18.7 222 25-271 163-411 (786)
160 TIGR00382 clpX endopeptidase C 99.5 8E-13 1.7E-17 118.0 17.3 221 34-256 79-387 (413)
161 KOG1942 DNA helicase, TBP-inte 99.5 1.6E-12 3.4E-17 108.1 17.4 132 125-276 296-441 (456)
162 COG0470 HolB ATPase involved i 99.5 7E-13 1.5E-17 116.6 16.5 147 32-211 1-176 (325)
163 PF06068 TIP49: TIP49 C-termin 99.5 4E-13 8.7E-18 115.9 13.4 106 125-250 278-396 (398)
164 COG2204 AtoC Response regulato 99.5 5.2E-13 1.1E-17 119.7 14.6 208 29-267 138-385 (464)
165 KOG2035 Replication factor C, 99.5 2.9E-12 6.2E-17 105.7 17.2 181 24-236 5-220 (351)
166 TIGR02031 BchD-ChlD magnesium 99.5 1.7E-12 3.7E-17 122.0 18.3 200 66-278 16-263 (589)
167 PRK04132 replication factor C 99.5 1.2E-12 2.5E-17 125.7 16.8 173 66-269 564-750 (846)
168 PHA02244 ATPase-like protein 99.5 2.2E-12 4.8E-17 112.3 17.0 127 64-205 117-263 (383)
169 PRK11608 pspF phage shock prot 99.5 1.3E-12 2.8E-17 114.7 15.1 191 31-251 5-238 (326)
170 PRK05707 DNA polymerase III su 99.5 2.3E-12 5E-17 112.6 16.5 156 65-246 21-204 (328)
171 TIGR01817 nifA Nif-specific re 99.5 7.3E-13 1.6E-17 124.0 14.1 209 26-267 190-439 (534)
172 PRK11388 DNA-binding transcrip 99.5 2.6E-12 5.7E-17 122.8 17.7 209 28-270 321-568 (638)
173 COG1239 ChlI Mg-chelatase subu 99.5 2.7E-12 6E-17 112.2 15.7 224 28-278 13-327 (423)
174 PRK08058 DNA polymerase III su 99.5 1.5E-12 3.3E-17 114.3 14.2 149 30-214 3-180 (329)
175 TIGR02974 phageshock_pspF psp 99.5 2.8E-12 6E-17 112.5 15.7 188 34-252 1-232 (329)
176 TIGR00678 holB DNA polymerase 99.5 3.1E-12 6.7E-17 103.7 14.9 143 65-236 13-183 (188)
177 KOG2680 DNA helicase TIP49, TB 99.5 9.7E-12 2.1E-16 103.7 17.8 144 125-288 288-445 (454)
178 KOG1514 Origin recognition com 99.4 8.5E-12 1.8E-16 114.6 18.8 221 33-276 397-658 (767)
179 PRK10865 protein disaggregatio 99.4 9.2E-12 2E-16 121.7 20.0 206 31-253 567-828 (857)
180 PF01078 Mg_chelatase: Magnesi 99.4 7.7E-14 1.7E-18 112.2 4.7 124 30-180 1-158 (206)
181 PRK09862 putative ATP-dependen 99.4 4.2E-12 9E-17 116.1 16.0 217 29-273 188-492 (506)
182 PF05621 TniB: Bacterial TniB 99.4 1.1E-11 2.3E-16 105.0 17.1 211 33-268 35-284 (302)
183 PRK10820 DNA-binding transcrip 99.4 4.5E-12 9.8E-17 117.9 16.3 210 26-266 198-447 (520)
184 PRK06871 DNA polymerase III su 99.4 1.8E-11 4E-16 106.3 18.6 168 38-245 8-203 (325)
185 PF13177 DNA_pol3_delta2: DNA 99.4 5.3E-12 1.2E-16 99.6 13.8 134 36-203 1-161 (162)
186 TIGR03346 chaperone_ClpB ATP-d 99.4 1.5E-11 3.2E-16 120.6 19.5 207 32-255 565-827 (852)
187 COG1221 PspF Transcriptional r 99.4 1.7E-12 3.8E-17 114.3 11.7 201 24-254 70-310 (403)
188 COG3829 RocR Transcriptional r 99.4 4.5E-12 9.7E-17 113.9 13.3 210 25-267 238-491 (560)
189 TIGR03345 VI_ClpV1 type VI sec 99.4 1.2E-11 2.6E-16 120.6 17.4 167 32-218 566-782 (852)
190 CHL00095 clpC Clp protease ATP 99.4 2.6E-11 5.6E-16 118.6 19.7 169 32-217 509-733 (821)
191 PRK07993 DNA polymerase III su 99.4 1.6E-11 3.5E-16 107.6 16.2 169 38-245 8-204 (334)
192 KOG0990 Replication factor C, 99.4 3.1E-12 6.8E-17 107.5 10.8 203 14-255 23-239 (360)
193 PRK15424 propionate catabolism 99.4 5.1E-12 1.1E-16 116.8 12.7 207 29-266 216-478 (538)
194 PRK05022 anaerobic nitric oxid 99.4 1.8E-11 3.9E-16 113.8 16.0 194 30-254 185-421 (509)
195 TIGR02329 propionate_PrpR prop 99.4 1.7E-11 3.6E-16 113.4 14.7 211 28-269 208-466 (526)
196 PRK06090 DNA polymerase III su 99.4 9.4E-11 2E-15 101.6 18.1 167 38-246 9-202 (319)
197 PRK08769 DNA polymerase III su 99.3 7.9E-11 1.7E-15 102.2 17.5 172 38-246 10-209 (319)
198 PRK15429 formate hydrogenlyase 99.3 4.1E-11 8.8E-16 115.5 17.2 200 28-252 372-608 (686)
199 COG3604 FhlA Transcriptional r 99.3 2.2E-11 4.8E-16 108.2 13.8 195 28-253 219-456 (550)
200 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.5E-17 100.9 5.2 113 68-194 1-139 (139)
201 PRK06964 DNA polymerase III su 99.3 1.1E-10 2.5E-15 102.1 17.9 133 64-215 19-203 (342)
202 COG0542 clpA ATP-binding subun 99.3 1.9E-11 4.2E-16 115.4 13.6 167 32-217 491-706 (786)
203 PF00158 Sigma54_activat: Sigm 99.3 4.3E-11 9.4E-16 94.7 13.4 119 34-180 1-143 (168)
204 KOG2227 Pre-initiation complex 99.3 1.7E-10 3.7E-15 101.8 17.2 223 30-275 148-417 (529)
205 PRK13765 ATP-dependent proteas 99.3 1.9E-10 4.1E-15 108.3 18.4 134 126-272 227-399 (637)
206 PTZ00111 DNA replication licen 99.3 1.2E-10 2.7E-15 111.6 17.0 229 33-275 451-806 (915)
207 smart00382 AAA ATPases associa 99.3 1.3E-10 2.8E-15 88.8 12.6 125 66-203 2-147 (148)
208 KOG0482 DNA replication licens 99.3 3.8E-11 8.2E-16 106.5 10.5 229 33-278 343-643 (721)
209 PF07726 AAA_3: ATPase family 99.3 3.8E-11 8.2E-16 88.9 8.8 111 68-194 1-129 (131)
210 TIGR02915 PEP_resp_reg putativ 99.3 1.5E-10 3.2E-15 106.4 14.6 203 30-266 137-382 (445)
211 PF03215 Rad17: Rad17 cell cyc 99.2 4E-10 8.7E-15 103.9 17.3 211 23-254 10-269 (519)
212 PF07724 AAA_2: AAA domain (Cd 99.2 2.3E-11 5.1E-16 96.5 7.4 117 66-182 3-131 (171)
213 PRK12377 putative replication 99.2 9.2E-11 2E-15 98.4 10.7 155 24-204 66-236 (248)
214 COG1220 HslU ATP-dependent pro 99.2 1.6E-10 3.6E-15 98.0 11.5 86 126-213 251-346 (444)
215 COG0606 Predicted ATPase with 99.2 6.5E-11 1.4E-15 105.1 9.1 216 28-272 175-484 (490)
216 smart00763 AAA_PrkA PrkA AAA d 99.2 7E-10 1.5E-14 96.8 15.0 166 31-218 49-329 (361)
217 PRK08116 hypothetical protein; 99.2 1.8E-10 3.8E-15 98.2 11.1 123 66-205 114-251 (268)
218 PRK10923 glnG nitrogen regulat 99.2 3.6E-10 7.8E-15 104.5 13.8 208 30-270 136-385 (469)
219 PRK11331 5-methylcytosine-spec 99.2 4.5E-10 9.9E-15 100.5 13.6 144 31-202 174-357 (459)
220 KOG0480 DNA replication licens 99.2 9.2E-10 2E-14 100.3 15.5 231 31-276 344-646 (764)
221 PF01637 Arch_ATPase: Archaeal 99.2 2E-10 4.4E-15 95.8 10.8 186 34-244 1-233 (234)
222 PRK08699 DNA polymerase III su 99.2 5.2E-10 1.1E-14 97.8 13.6 132 64-214 19-183 (325)
223 PRK13406 bchD magnesium chelat 99.2 1.7E-09 3.6E-14 101.2 16.7 198 67-278 26-255 (584)
224 PRK11361 acetoacetate metaboli 99.1 1E-09 2.2E-14 101.2 14.9 206 31-270 142-390 (457)
225 KOG0478 DNA replication licens 99.1 9.4E-10 2E-14 101.0 14.2 227 34-276 431-727 (804)
226 KOG0741 AAA+-type ATPase [Post 99.1 7.6E-10 1.6E-14 99.0 12.6 143 66-214 538-684 (744)
227 PRK15115 response regulator Gl 99.1 1.7E-09 3.7E-14 99.4 14.5 204 33-270 135-381 (444)
228 COG1241 MCM2 Predicted ATPase 99.1 6E-10 1.3E-14 104.4 11.5 227 32-276 286-595 (682)
229 PRK07952 DNA replication prote 99.1 8.5E-10 1.8E-14 92.3 10.7 132 24-181 64-205 (244)
230 PRK08181 transposase; Validate 99.1 7.7E-10 1.7E-14 93.9 10.3 128 65-210 105-249 (269)
231 KOG1970 Checkpoint RAD17-RFC c 99.1 4.4E-09 9.6E-14 94.6 15.4 213 24-255 74-322 (634)
232 TIGR01818 ntrC nitrogen regula 99.1 2.4E-09 5.2E-14 98.9 14.1 207 31-270 133-381 (463)
233 PF13173 AAA_14: AAA domain 99.1 1.2E-09 2.5E-14 82.9 9.7 119 67-208 3-127 (128)
234 PF14532 Sigma54_activ_2: Sigm 99.1 5.4E-10 1.2E-14 85.9 7.8 106 35-180 1-109 (138)
235 PF00493 MCM: MCM2/3/5 family 99.1 2.6E-11 5.7E-16 106.5 0.0 227 33-275 25-328 (331)
236 PRK05917 DNA polymerase III su 99.0 1.1E-08 2.5E-13 87.1 13.9 131 39-203 4-154 (290)
237 PF12775 AAA_7: P-loop contain 99.0 1.9E-09 4.1E-14 92.0 9.0 143 65-218 32-195 (272)
238 COG3283 TyrR Transcriptional r 99.0 9.9E-09 2.1E-13 88.0 13.0 194 27-252 199-428 (511)
239 PRK06526 transposase; Provisio 99.0 1.6E-09 3.4E-14 91.5 8.2 101 65-181 97-201 (254)
240 PRK06835 DNA replication prote 99.0 3.5E-09 7.6E-14 92.6 10.1 123 66-205 183-319 (329)
241 COG3267 ExeA Type II secretory 99.0 1.2E-07 2.5E-12 78.1 18.2 186 68-267 53-267 (269)
242 PRK05818 DNA polymerase III su 98.9 1E-07 2.2E-12 79.7 16.8 156 64-247 5-192 (261)
243 PF12774 AAA_6: Hydrolytic ATP 98.9 2.6E-08 5.7E-13 82.8 13.3 127 66-213 32-177 (231)
244 PRK07276 DNA polymerase III su 98.9 1.2E-07 2.6E-12 81.2 17.4 170 37-247 7-199 (290)
245 KOG0745 Putative ATP-dependent 98.9 5.2E-09 1.1E-13 91.7 8.9 96 67-162 227-331 (564)
246 PRK08939 primosomal protein Dn 98.9 9.1E-09 2E-13 89.3 10.3 102 65-181 155-261 (306)
247 PRK06921 hypothetical protein; 98.9 9.6E-09 2.1E-13 87.5 10.1 105 65-181 116-225 (266)
248 PRK10365 transcriptional regul 98.9 3.3E-08 7.1E-13 90.8 14.1 207 33-270 140-386 (441)
249 PRK09183 transposase/IS protei 98.9 1.1E-08 2.4E-13 86.9 10.1 103 64-181 100-206 (259)
250 COG1219 ClpX ATP-dependent pro 98.9 6.9E-09 1.5E-13 87.6 8.6 97 66-162 97-202 (408)
251 PF01695 IstB_IS21: IstB-like 98.9 3.6E-09 7.7E-14 84.7 6.0 102 64-181 45-150 (178)
252 COG1484 DnaC DNA replication p 98.9 1.2E-08 2.6E-13 86.2 9.4 101 65-181 104-209 (254)
253 PF14516 AAA_35: AAA-like doma 98.9 1.4E-06 3E-11 76.8 22.4 186 35-247 14-241 (331)
254 PF13401 AAA_22: AAA domain; P 98.9 2.8E-08 6.1E-13 75.3 10.1 72 66-137 4-99 (131)
255 PF05729 NACHT: NACHT domain 98.8 4.2E-08 9.1E-13 77.3 11.0 140 68-218 2-165 (166)
256 PRK07132 DNA polymerase III su 98.8 4.8E-07 1E-11 78.1 17.4 126 65-214 17-160 (299)
257 PF03969 AFG1_ATPase: AFG1-lik 98.8 2.2E-08 4.7E-13 88.7 8.9 103 63-181 59-168 (362)
258 KOG0477 DNA replication licens 98.8 3.6E-08 7.8E-13 89.9 10.1 227 34-277 451-761 (854)
259 KOG2228 Origin recognition com 98.7 3.7E-07 8.1E-12 77.9 14.3 164 31-217 23-220 (408)
260 KOG1051 Chaperone HSP104 and r 98.7 1.1E-07 2.5E-12 91.5 12.4 130 33-180 563-710 (898)
261 PF00931 NB-ARC: NB-ARC domain 98.7 1.3E-06 2.8E-11 75.4 17.9 174 38-246 2-203 (287)
262 PLN03210 Resistant to P. syrin 98.7 1.4E-06 3E-11 89.0 20.5 178 26-238 178-389 (1153)
263 KOG0481 DNA replication licens 98.7 1.5E-07 3.2E-12 84.2 10.5 241 15-276 318-642 (729)
264 KOG2170 ATPase of the AAA+ sup 98.7 1.1E-06 2.4E-11 74.0 14.2 220 33-274 83-320 (344)
265 cd01120 RecA-like_NTPases RecA 98.7 2.7E-07 5.8E-12 72.4 10.2 110 69-182 2-138 (165)
266 PF13191 AAA_16: AAA ATPase do 98.6 1.3E-07 2.9E-12 76.0 8.1 59 34-102 2-63 (185)
267 COG1485 Predicted ATPase [Gene 98.6 1.9E-07 4.1E-12 80.4 8.8 101 64-181 63-171 (367)
268 KOG1968 Replication factor C, 98.6 2.3E-07 5E-12 89.9 9.9 211 23-253 311-536 (871)
269 COG3284 AcoR Transcriptional a 98.6 3E-07 6.6E-12 84.6 10.0 187 36-253 317-540 (606)
270 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 1.9E-07 4.1E-12 77.8 7.3 58 115-186 147-204 (254)
271 TIGR02237 recomb_radB DNA repa 98.5 5.3E-07 1.1E-11 74.2 8.3 78 62-139 8-111 (209)
272 cd01121 Sms Sms (bacterial rad 98.4 2.7E-06 5.7E-11 75.9 11.5 78 62-139 78-172 (372)
273 PF00910 RNA_helicase: RNA hel 98.4 4.6E-07 9.9E-12 66.3 5.4 23 69-91 1-23 (107)
274 PRK06581 DNA polymerase III su 98.4 1E-05 2.2E-10 66.7 13.6 139 65-222 14-167 (263)
275 cd03216 ABC_Carb_Monos_I This 98.4 3.7E-06 8E-11 66.4 10.8 107 62-182 22-143 (163)
276 PRK11823 DNA repair protein Ra 98.4 3.2E-06 6.9E-11 77.4 11.7 79 62-140 76-171 (446)
277 COG4178 ABC-type uncharacteriz 98.4 6.4E-07 1.4E-11 83.1 7.0 107 61-182 414-575 (604)
278 COG1126 GlnQ ABC-type polar am 98.4 3.4E-06 7.3E-11 68.0 10.1 52 115-180 144-195 (240)
279 KOG2383 Predicted ATPase [Gene 98.4 4.8E-06 1E-10 72.8 11.6 161 64-251 112-298 (467)
280 COG1116 TauB ABC-type nitrate/ 98.4 7.7E-07 1.7E-11 73.4 6.3 29 62-90 25-53 (248)
281 COG1119 ModF ABC-type molybden 98.4 3.4E-06 7.4E-11 69.3 10.0 62 116-189 180-241 (257)
282 cd03222 ABC_RNaseL_inhibitor T 98.4 4.4E-06 9.6E-11 66.7 10.4 107 63-182 22-133 (177)
283 COG1373 Predicted ATPase (AAA+ 98.4 2.8E-05 6.1E-10 70.2 16.8 121 68-210 39-161 (398)
284 cd01124 KaiC KaiC is a circadi 98.4 5.7E-06 1.2E-10 66.7 10.8 102 69-181 2-140 (187)
285 COG1618 Predicted nucleotide k 98.3 1.2E-05 2.6E-10 61.8 11.5 25 66-90 5-29 (179)
286 TIGR02012 tigrfam_recA protein 98.3 6.3E-06 1.4E-10 71.7 11.4 78 62-139 51-147 (321)
287 cd00983 recA RecA is a bacter 98.3 7E-06 1.5E-10 71.4 11.4 78 62-139 51-147 (325)
288 COG5271 MDN1 AAA ATPase contai 98.3 1E-05 2.2E-10 81.7 13.2 139 64-217 886-1048(4600)
289 KOG1051 Chaperone HSP104 and r 98.3 1E-05 2.3E-10 78.3 13.2 199 31-255 185-412 (898)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 8.8E-06 1.9E-10 62.9 10.4 104 62-182 22-128 (144)
291 KOG2543 Origin recognition com 98.3 1.9E-05 4.2E-10 68.7 13.3 163 32-217 6-194 (438)
292 PRK08533 flagellar accessory p 98.3 1.2E-05 2.6E-10 67.1 11.9 110 62-181 20-163 (230)
293 COG4650 RtcR Sigma54-dependent 98.3 2.6E-06 5.7E-11 71.6 7.7 85 62-163 204-309 (531)
294 PRK04841 transcriptional regul 98.3 6E-05 1.3E-09 75.5 18.7 183 27-245 9-225 (903)
295 cd03283 ABC_MutS-like MutS-lik 98.3 8.1E-06 1.7E-10 66.6 10.2 31 60-90 19-49 (199)
296 cd00267 ABC_ATPase ABC (ATP-bi 98.3 1.1E-05 2.3E-10 63.3 10.6 107 63-183 22-142 (157)
297 COG2884 FtsE Predicted ATPase 98.3 1.5E-05 3.3E-10 63.0 10.9 54 118-185 148-201 (223)
298 cd01129 PulE-GspE PulE/GspE Th 98.3 1.2E-05 2.6E-10 68.6 11.1 101 21-135 49-159 (264)
299 COG1136 SalX ABC-type antimicr 98.3 6.4E-06 1.4E-10 67.7 9.0 30 61-90 26-55 (226)
300 cd03238 ABC_UvrA The excision 98.3 9.9E-06 2.2E-10 64.6 10.0 107 62-182 17-150 (176)
301 PRK09361 radB DNA repair and r 98.3 6.3E-06 1.4E-10 68.6 9.2 39 62-100 19-60 (225)
302 COG1120 FepC ABC-type cobalami 98.2 8.9E-06 1.9E-10 68.2 9.9 86 115-216 146-236 (258)
303 PF13207 AAA_17: AAA domain; P 98.2 1E-06 2.2E-11 65.8 3.8 31 69-99 2-32 (121)
304 PF04665 Pox_A32: Poxvirus A32 98.2 2.3E-05 5E-10 65.2 12.0 134 64-216 11-170 (241)
305 cd03228 ABCC_MRP_Like The MRP 98.2 9.1E-06 2E-10 64.7 9.2 108 62-184 24-158 (171)
306 COG5271 MDN1 AAA ATPase contai 98.2 1.3E-05 2.8E-10 80.9 11.6 138 66-218 1543-1705(4600)
307 cd03214 ABC_Iron-Siderophores_ 98.2 1.2E-05 2.6E-10 64.6 9.8 109 62-183 21-160 (180)
308 TIGR00416 sms DNA repair prote 98.2 1.9E-05 4.2E-10 72.3 12.2 78 62-139 90-184 (454)
309 cd03247 ABCC_cytochrome_bd The 98.2 1.8E-05 3.9E-10 63.4 10.7 108 62-184 24-160 (178)
310 PF06309 Torsin: Torsin; Inte 98.2 1.1E-05 2.5E-10 59.8 8.6 53 32-90 25-77 (127)
311 PRK06067 flagellar accessory p 98.2 8.6E-06 1.9E-10 68.3 9.1 39 62-100 21-62 (234)
312 PRK10536 hypothetical protein; 98.2 2.7E-05 6E-10 65.2 11.8 46 29-89 52-97 (262)
313 PHA00729 NTP-binding motif con 98.2 4.2E-06 9.2E-11 68.8 6.8 25 67-91 18-42 (226)
314 COG4619 ABC-type uncharacteriz 98.2 1.4E-05 2.9E-10 62.1 9.0 29 62-90 25-53 (223)
315 PF07693 KAP_NTPase: KAP famil 98.2 0.00033 7.2E-09 61.6 19.1 78 124-217 171-264 (325)
316 PRK04296 thymidine kinase; Pro 98.2 3.5E-05 7.6E-10 62.4 11.7 31 67-97 3-36 (190)
317 cd03223 ABCD_peroxisomal_ALDP 98.2 2.5E-05 5.4E-10 61.8 10.6 104 62-182 23-149 (166)
318 KOG0479 DNA replication licens 98.2 4.5E-05 9.8E-10 69.7 13.1 155 33-205 302-487 (818)
319 PHA02624 large T antigen; Prov 98.2 1.3E-05 2.8E-10 74.4 9.8 40 62-101 427-466 (647)
320 cd01123 Rad51_DMC1_radA Rad51_ 98.2 1.5E-05 3.2E-10 66.8 9.5 40 62-101 15-63 (235)
321 cd03246 ABCC_Protease_Secretio 98.2 3.1E-05 6.7E-10 61.7 10.8 106 63-182 25-157 (173)
322 cd03230 ABC_DR_subfamily_A Thi 98.1 2.6E-05 5.6E-10 62.2 10.3 106 63-182 23-156 (173)
323 cd01394 radB RadB. The archaea 98.1 1.5E-05 3.2E-10 66.1 9.2 39 62-100 15-56 (218)
324 PRK08118 topology modulation p 98.1 7.1E-06 1.5E-10 65.0 6.9 33 68-100 3-35 (167)
325 COG1066 Sms Predicted ATP-depe 98.1 2.7E-05 5.9E-10 68.6 10.8 100 62-161 89-207 (456)
326 cd01131 PilT Pilus retraction 98.1 1.8E-05 4E-10 64.5 9.3 67 68-134 3-83 (198)
327 TIGR03877 thermo_KaiC_1 KaiC d 98.1 5.4E-05 1.2E-09 63.6 12.4 39 62-100 17-58 (237)
328 COG2274 SunT ABC-type bacterio 98.1 1.5E-05 3.3E-10 76.5 10.0 29 62-90 495-523 (709)
329 COG1117 PstB ABC-type phosphat 98.1 4.1E-05 8.8E-10 61.8 10.7 28 63-90 30-57 (253)
330 PRK07261 topology modulation p 98.1 8.4E-06 1.8E-10 64.9 6.8 34 68-101 2-35 (171)
331 COG3899 Predicted ATPase [Gene 98.1 0.00014 3.1E-09 71.7 16.7 192 34-251 2-266 (849)
332 COG3854 SpoIIIAA ncharacterize 98.1 3.2E-05 7E-10 63.0 10.0 94 66-180 137-252 (308)
333 PRK09354 recA recombinase A; P 98.1 3.2E-05 7E-10 67.9 10.9 78 62-139 56-152 (349)
334 TIGR01618 phage_P_loop phage n 98.1 1.2E-05 2.6E-10 66.2 7.6 23 66-88 12-34 (220)
335 COG4618 ArpD ABC-type protease 98.1 2.4E-05 5.3E-10 70.5 9.9 28 63-90 359-386 (580)
336 PRK15455 PrkA family serine pr 98.1 4.4E-06 9.6E-11 77.1 5.3 62 29-97 73-135 (644)
337 PRK05973 replicative DNA helic 98.1 7.9E-05 1.7E-09 62.1 12.3 39 62-100 60-101 (237)
338 PF00437 T2SE: Type II/IV secr 98.1 6.8E-06 1.5E-10 70.4 5.9 100 25-135 97-207 (270)
339 COG2804 PulE Type II secretory 98.1 3.2E-05 6.9E-10 70.1 10.2 101 21-135 227-337 (500)
340 TIGR03878 thermo_KaiC_2 KaiC d 98.1 5.7E-05 1.2E-09 64.3 11.4 39 62-100 32-73 (259)
341 TIGR02858 spore_III_AA stage I 98.1 1.3E-05 2.7E-10 68.4 7.3 26 67-92 112-137 (270)
342 COG1125 OpuBA ABC-type proline 98.1 2.7E-05 5.8E-10 64.4 8.8 30 62-91 23-52 (309)
343 TIGR02688 conserved hypothetic 98.1 7.7E-05 1.7E-09 66.7 12.3 82 64-162 207-290 (449)
344 cd03213 ABCG_EPDR ABCG transpo 98.1 5.6E-05 1.2E-09 61.5 10.8 106 63-182 32-172 (194)
345 PF05707 Zot: Zonular occluden 98.1 8.7E-06 1.9E-10 66.2 6.0 123 69-203 3-146 (193)
346 PHA02774 E1; Provisional 98.1 3.2E-05 7E-10 71.5 10.1 57 63-134 431-488 (613)
347 cd03243 ABC_MutS_homologs The 98.1 5.1E-05 1.1E-09 62.1 10.5 26 63-88 26-51 (202)
348 cd01393 recA_like RecA is a b 98.1 3.1E-05 6.8E-10 64.4 9.4 40 62-101 15-63 (226)
349 cd03281 ABC_MSH5_euk MutS5 hom 98.0 8E-05 1.7E-09 61.4 11.6 22 67-88 30-51 (213)
350 COG1118 CysA ABC-type sulfate/ 98.0 8.2E-06 1.8E-10 69.2 5.6 29 62-90 24-52 (345)
351 cd01128 rho_factor Transcripti 98.0 0.00011 2.5E-09 61.8 12.5 30 63-92 13-42 (249)
352 cd03229 ABC_Class3 This class 98.0 7.4E-05 1.6E-09 59.9 10.9 108 63-183 23-163 (178)
353 COG3842 PotA ABC-type spermidi 98.0 6.7E-06 1.5E-10 72.0 5.1 29 62-90 27-55 (352)
354 TIGR02533 type_II_gspE general 98.0 6.2E-05 1.3E-09 69.6 11.6 98 24-135 214-321 (486)
355 cd03215 ABC_Carb_Monos_II This 98.0 2.8E-05 6.2E-10 62.5 8.4 106 63-182 23-165 (182)
356 PRK09376 rho transcription ter 98.0 7.5E-05 1.6E-09 66.2 11.5 116 63-178 166-317 (416)
357 PRK00771 signal recognition pa 98.0 0.00035 7.6E-09 63.6 16.2 193 65-275 94-334 (437)
358 PF10443 RNA12: RNA12 protein; 98.0 0.0012 2.5E-08 59.2 18.9 53 38-104 2-55 (431)
359 PRK00131 aroK shikimate kinase 98.0 6.6E-06 1.4E-10 65.4 4.6 35 64-98 2-36 (175)
360 PF06745 KaiC: KaiC; InterPro 98.0 5E-05 1.1E-09 63.3 10.0 108 62-179 15-159 (226)
361 PF13604 AAA_30: AAA domain; P 98.0 2.4E-05 5.2E-10 63.7 7.8 35 66-100 18-55 (196)
362 TIGR01420 pilT_fam pilus retra 98.0 4.2E-05 9.1E-10 67.8 9.9 71 65-135 121-205 (343)
363 COG1124 DppF ABC-type dipeptid 98.0 2.2E-05 4.7E-10 64.6 7.1 28 63-90 30-57 (252)
364 PRK13539 cytochrome c biogenes 98.0 7.8E-05 1.7E-09 61.2 10.6 29 62-90 24-52 (207)
365 cd03217 ABC_FeS_Assembly ABC-t 98.0 0.00011 2.3E-09 60.1 11.2 107 62-182 22-165 (200)
366 cd03233 ABC_PDR_domain1 The pl 98.0 9.1E-05 2E-09 60.6 10.8 29 63-91 30-58 (202)
367 TIGR02788 VirB11 P-type DNA tr 98.0 5.3E-05 1.1E-09 66.2 9.9 74 62-135 140-228 (308)
368 cd00984 DnaB_C DnaB helicase C 98.0 4.3E-05 9.3E-10 64.3 9.0 38 62-99 9-50 (242)
369 TIGR02868 CydC thiol reductant 98.0 5.6E-05 1.2E-09 71.1 10.7 29 63-91 358-386 (529)
370 PF05272 VirE: Virulence-assoc 98.0 5.9E-05 1.3E-09 61.3 9.3 111 62-202 48-169 (198)
371 PRK13541 cytochrome c biogenes 98.0 0.00013 2.9E-09 59.2 11.4 29 62-90 22-50 (195)
372 PRK04328 hypothetical protein; 98.0 0.00018 3.9E-09 60.9 12.5 38 62-99 19-59 (249)
373 COG1131 CcmA ABC-type multidru 98.0 4.1E-05 8.8E-10 66.3 8.8 49 123-184 152-200 (293)
374 COG1127 Ttg2A ABC-type transpo 98.0 0.00011 2.4E-09 60.4 10.6 29 62-90 30-58 (263)
375 COG4608 AppF ABC-type oligopep 97.9 6.1E-05 1.3E-09 63.1 9.1 108 61-181 34-170 (268)
376 cd03232 ABC_PDR_domain2 The pl 97.9 0.00011 2.4E-09 59.6 10.5 106 63-182 30-169 (192)
377 cd01130 VirB11-like_ATPase Typ 97.9 1.1E-05 2.5E-10 65.0 4.6 72 64-135 23-110 (186)
378 TIGR01166 cbiO cobalt transpor 97.9 0.00016 3.4E-09 58.6 11.3 29 62-90 14-42 (190)
379 PF13671 AAA_33: AAA domain; P 97.9 3.5E-05 7.6E-10 59.1 7.1 32 69-102 2-33 (143)
380 cd03280 ABC_MutS2 MutS2 homolo 97.9 0.00015 3.3E-09 59.2 11.1 25 63-87 24-49 (200)
381 TIGR02782 TrbB_P P-type conjug 97.9 3.4E-05 7.3E-10 67.0 7.5 70 66-135 132-214 (299)
382 COG1122 CbiO ABC-type cobalt t 97.9 7.3E-05 1.6E-09 62.4 9.2 30 62-91 26-55 (235)
383 TIGR00960 3a0501s02 Type II (G 97.9 3.7E-05 8E-10 63.6 7.4 29 62-90 25-53 (216)
384 cd01122 GP4d_helicase GP4d_hel 97.9 8.6E-05 1.9E-09 63.6 9.9 38 62-99 26-67 (271)
385 cd03226 ABC_cobalt_CbiO_domain 97.9 0.00012 2.6E-09 60.0 10.3 28 63-90 23-50 (205)
386 smart00534 MUTSac ATPase domai 97.9 0.00024 5.2E-09 57.3 11.8 19 69-87 2-20 (185)
387 PRK05800 cobU adenosylcobinami 97.9 8.4E-05 1.8E-09 59.0 8.9 34 68-101 3-36 (170)
388 TIGR01188 drrA daunorubicin re 97.9 2.6E-05 5.6E-10 68.0 6.6 29 62-90 15-43 (302)
389 PRK13540 cytochrome c biogenes 97.9 5.4E-05 1.2E-09 61.8 8.1 28 63-90 24-51 (200)
390 PRK10436 hypothetical protein; 97.9 8.8E-05 1.9E-09 68.0 10.2 103 19-135 185-297 (462)
391 TIGR02538 type_IV_pilB type IV 97.9 8.9E-05 1.9E-09 70.0 10.5 103 19-135 283-395 (564)
392 cd03287 ABC_MSH3_euk MutS3 hom 97.9 0.00021 4.6E-09 59.2 11.5 25 64-88 29-53 (222)
393 PRK13538 cytochrome c biogenes 97.9 0.00013 2.7E-09 59.9 10.2 29 62-90 23-51 (204)
394 PLN03187 meiotic recombination 97.9 0.00011 2.4E-09 64.7 10.4 116 62-178 122-273 (344)
395 cd03282 ABC_MSH4_euk MutS4 hom 97.9 0.00021 4.7E-09 58.4 11.4 25 64-88 27-51 (204)
396 TIGR02238 recomb_DMC1 meiotic 97.9 8.4E-05 1.8E-09 64.8 9.5 40 62-101 92-140 (313)
397 PRK06762 hypothetical protein; 97.9 4.1E-05 8.9E-10 60.5 7.0 37 67-103 3-39 (166)
398 KOG3347 Predicted nucleotide k 97.9 1.1E-05 2.4E-10 61.0 3.4 33 66-98 7-39 (176)
399 PRK13900 type IV secretion sys 97.9 9.5E-05 2.1E-09 65.1 9.6 72 64-135 158-245 (332)
400 COG1134 TagH ABC-type polysacc 97.9 0.00017 3.7E-09 59.5 10.3 31 63-93 50-80 (249)
401 cd03218 ABC_YhbG The ABC trans 97.9 6.3E-05 1.4E-09 62.9 8.1 29 62-90 22-50 (232)
402 cd03269 ABC_putative_ATPase Th 97.9 0.0002 4.3E-09 58.9 10.9 29 62-90 22-50 (210)
403 cd00544 CobU Adenosylcobinamid 97.9 0.00018 3.9E-09 57.0 10.1 106 69-180 2-125 (169)
404 PRK13537 nodulation ABC transp 97.9 9.7E-05 2.1E-09 64.5 9.5 29 62-90 29-57 (306)
405 cd03301 ABC_MalK_N The N-termi 97.9 0.00016 3.5E-09 59.6 10.3 28 63-90 23-50 (213)
406 PRK11650 ugpC glycerol-3-phosp 97.9 4.4E-05 9.5E-10 68.0 7.3 29 62-90 26-54 (356)
407 TIGR03880 KaiC_arch_3 KaiC dom 97.9 0.00026 5.5E-09 58.9 11.5 39 62-100 12-53 (224)
408 TIGR02525 plasmid_TraJ plasmid 97.9 0.00013 2.8E-09 65.0 10.1 70 66-135 149-235 (372)
409 cd03292 ABC_FtsE_transporter F 97.8 0.00022 4.8E-09 58.8 10.9 29 62-90 23-51 (214)
410 cd03268 ABC_BcrA_bacitracin_re 97.8 0.00021 4.5E-09 58.7 10.6 28 63-90 23-50 (208)
411 KOG0056 Heavy metal exporter H 97.8 4.6E-05 9.9E-10 68.6 7.0 28 63-90 561-588 (790)
412 COG4555 NatA ABC-type Na+ tran 97.8 0.00017 3.6E-09 57.8 9.3 28 63-90 25-52 (245)
413 TIGR02314 ABC_MetN D-methionin 97.8 4.1E-05 8.8E-10 67.7 6.7 29 62-90 27-55 (343)
414 TIGR03740 galliderm_ABC gallid 97.8 0.0002 4.3E-09 59.5 10.5 29 62-90 22-50 (223)
415 TIGR03608 L_ocin_972_ABC putat 97.8 0.00017 3.7E-09 59.1 10.0 28 63-90 21-48 (206)
416 PTZ00202 tuzin; Provisional 97.8 0.0013 2.7E-08 59.3 15.8 61 30-100 260-320 (550)
417 cd03263 ABC_subfamily_A The AB 97.8 0.00016 3.4E-09 60.0 9.8 28 63-90 25-52 (220)
418 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 0.00018 3.9E-09 60.4 10.2 29 62-90 23-51 (236)
419 COG3839 MalK ABC-type sugar tr 97.8 4.8E-05 1E-09 66.4 6.9 29 62-90 25-53 (338)
420 PRK12723 flagellar biosynthesi 97.8 0.00031 6.7E-09 62.9 12.2 25 66-90 174-198 (388)
421 PRK03839 putative kinase; Prov 97.8 1.7E-05 3.7E-10 63.6 3.8 31 68-98 2-32 (180)
422 cd03231 ABC_CcmA_heme_exporter 97.8 7.2E-05 1.6E-09 61.1 7.5 28 63-90 23-50 (201)
423 PRK04301 radA DNA repair and r 97.8 0.00014 2.9E-09 63.9 9.6 40 62-101 98-146 (317)
424 PRK13543 cytochrome c biogenes 97.8 6.7E-05 1.4E-09 62.0 7.3 29 62-90 33-61 (214)
425 KOG0058 Peptide exporter, ABC 97.8 5.2E-05 1.1E-09 71.2 7.2 29 62-90 490-518 (716)
426 cd00227 CPT Chloramphenicol (C 97.8 1.9E-05 4.1E-10 63.1 3.8 36 66-101 2-37 (175)
427 PRK00625 shikimate kinase; Pro 97.8 2.2E-05 4.7E-10 62.5 4.1 31 68-98 2-32 (173)
428 TIGR03522 GldA_ABC_ATP gliding 97.8 4.5E-05 9.7E-10 66.4 6.4 29 62-90 24-52 (301)
429 PRK13947 shikimate kinase; Pro 97.8 2.2E-05 4.8E-10 62.4 4.1 31 68-98 3-33 (171)
430 PRK11174 cysteine/glutathione 97.8 0.00014 3.1E-09 69.3 10.3 29 62-90 372-400 (588)
431 COG2909 MalT ATP-dependent tra 97.8 0.001 2.2E-08 63.9 15.5 179 27-239 14-228 (894)
432 cd03265 ABC_DrrA DrrA is the A 97.8 0.00024 5.2E-09 58.9 10.4 29 62-90 22-50 (220)
433 TIGR02236 recomb_radA DNA repa 97.8 0.00017 3.6E-09 63.2 9.9 40 62-101 91-139 (310)
434 cd03225 ABC_cobalt_CbiO_domain 97.8 9.7E-05 2.1E-09 60.8 8.0 28 63-90 24-51 (211)
435 PRK09452 potA putrescine/sperm 97.8 8.2E-05 1.8E-09 66.6 8.0 29 62-90 36-64 (375)
436 PRK09536 btuD corrinoid ABC tr 97.8 9.5E-05 2.1E-09 66.7 8.5 29 62-90 25-53 (402)
437 PRK13833 conjugal transfer pro 97.8 7.6E-05 1.7E-09 65.1 7.6 69 66-134 144-224 (323)
438 cd03264 ABC_drug_resistance_li 97.8 6.7E-05 1.5E-09 61.8 7.0 27 63-90 23-49 (211)
439 PRK11607 potG putrescine trans 97.8 5.2E-05 1.1E-09 68.0 6.7 29 62-90 41-69 (377)
440 cd03266 ABC_NatA_sodium_export 97.8 7.4E-05 1.6E-09 61.8 7.2 29 62-90 27-55 (218)
441 cd03227 ABC_Class2 ABC-type Cl 97.8 0.00041 8.9E-09 54.6 11.0 24 65-88 20-43 (162)
442 TIGR00767 rho transcription te 97.8 0.00018 4E-09 64.0 9.8 29 63-91 165-193 (415)
443 PRK11176 lipid transporter ATP 97.8 0.00025 5.3E-09 67.6 11.6 28 63-90 366-393 (582)
444 TIGR03881 KaiC_arch_4 KaiC dom 97.8 0.00038 8.2E-09 58.1 11.4 37 62-98 16-55 (229)
445 cd03293 ABC_NrtD_SsuB_transpor 97.8 0.00029 6.2E-09 58.4 10.6 29 62-90 26-54 (220)
446 PRK13695 putative NTPase; Prov 97.8 0.00063 1.4E-08 54.2 12.2 23 68-90 2-24 (174)
447 PF01745 IPT: Isopentenyl tran 97.8 6.4E-05 1.4E-09 60.7 6.2 139 68-222 3-145 (233)
448 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 0.00031 6.7E-09 58.5 10.7 29 62-90 44-72 (224)
449 cd03259 ABC_Carb_Solutes_like 97.8 0.00011 2.3E-09 60.7 7.9 29 62-90 22-50 (213)
450 PRK11248 tauB taurine transpor 97.8 0.0002 4.3E-09 60.9 9.5 29 62-90 23-51 (255)
451 PRK13536 nodulation factor exp 97.8 0.00018 3.9E-09 63.7 9.5 29 62-90 63-91 (340)
452 PRK11432 fbpC ferric transport 97.8 9.5E-05 2.1E-09 65.7 7.7 29 62-90 28-56 (351)
453 TIGR01189 ccmA heme ABC export 97.8 0.00013 2.9E-09 59.4 8.1 29 62-90 22-50 (198)
454 PRK13949 shikimate kinase; Pro 97.8 2.8E-05 6E-10 61.8 3.9 31 68-98 3-33 (169)
455 PRK06217 hypothetical protein; 97.8 2.9E-05 6.2E-10 62.6 4.0 31 68-98 3-33 (183)
456 PRK13894 conjugal transfer ATP 97.8 0.00012 2.5E-09 64.1 8.1 71 65-135 147-229 (319)
457 PTZ00035 Rad51 protein; Provis 97.8 0.00025 5.4E-09 62.6 10.2 28 62-89 114-141 (337)
458 PRK14530 adenylate kinase; Pro 97.8 3.1E-05 6.8E-10 64.0 4.3 31 67-97 4-34 (215)
459 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 2.8E-05 6E-10 62.5 3.9 29 69-97 2-30 (183)
460 PF00448 SRP54: SRP54-type pro 97.7 0.00068 1.5E-08 55.1 11.9 102 66-180 1-125 (196)
461 COG4133 CcmA ABC-type transpor 97.7 0.00046 9.9E-09 54.7 10.4 29 63-91 25-53 (209)
462 PRK13546 teichoic acids export 97.7 0.00031 6.8E-09 59.9 10.4 29 62-90 46-74 (264)
463 TIGR03265 PhnT2 putative 2-ami 97.7 0.00011 2.3E-09 65.4 7.8 28 63-90 27-54 (353)
464 PRK14532 adenylate kinase; Pro 97.7 3E-05 6.5E-10 62.6 4.0 30 68-97 2-31 (188)
465 cd00464 SK Shikimate kinase (S 97.7 3.2E-05 6.9E-10 60.2 4.0 31 68-98 1-31 (154)
466 TIGR01288 nodI ATP-binding ABC 97.7 0.00027 5.9E-09 61.6 10.2 28 63-90 27-54 (303)
467 PF05970 PIF1: PIF1-like helic 97.7 0.00023 5.1E-09 63.6 10.0 102 64-179 20-149 (364)
468 TIGR02655 circ_KaiC circadian 97.7 0.00047 1E-08 64.1 12.2 39 62-100 17-59 (484)
469 PRK09544 znuC high-affinity zi 97.7 0.00031 6.8E-09 59.5 10.2 29 62-90 26-54 (251)
470 PRK13657 cyclic beta-1,2-gluca 97.7 0.00032 7E-09 66.9 11.5 28 63-90 358-385 (588)
471 cd03267 ABC_NatA_like Similar 97.7 0.00033 7.2E-09 58.7 10.2 29 62-90 43-71 (236)
472 PRK12339 2-phosphoglycerate ki 97.7 0.00037 8.1E-09 56.6 10.1 37 239-275 157-193 (197)
473 PRK11153 metN DL-methionine tr 97.7 0.00011 2.3E-09 65.3 7.5 29 62-90 27-55 (343)
474 PRK09519 recA DNA recombinatio 97.7 0.00039 8.4E-09 67.2 11.7 78 62-139 56-152 (790)
475 PRK11000 maltose/maltodextrin 97.7 0.00012 2.6E-09 65.5 7.8 29 62-90 25-53 (369)
476 PRK10790 putative multidrug tr 97.7 0.00027 5.9E-09 67.5 10.6 30 62-91 363-392 (592)
477 TIGR03375 type_I_sec_LssB type 97.7 0.00023 5.1E-09 69.2 10.3 28 63-90 488-515 (694)
478 COG2874 FlaH Predicted ATPases 97.7 0.00033 7.2E-09 56.5 9.2 126 52-190 12-176 (235)
479 cd03237 ABC_RNaseL_inhibitor_d 97.7 0.00071 1.5E-08 57.1 11.9 28 63-90 22-49 (246)
480 TIGR00150 HI0065_YjeE ATPase, 97.7 0.0001 2.2E-09 55.8 6.0 31 63-93 19-49 (133)
481 PF12780 AAA_8: P-loop contain 97.7 0.00033 7.2E-09 59.7 9.8 91 33-136 9-100 (268)
482 PRK06547 hypothetical protein; 97.7 5.7E-05 1.2E-09 60.1 4.9 35 64-98 13-47 (172)
483 PRK13948 shikimate kinase; Pro 97.7 5.4E-05 1.2E-09 60.7 4.7 35 64-98 8-42 (182)
484 TIGR03258 PhnT 2-aminoethylpho 97.7 0.00047 1E-08 61.6 11.1 28 63-90 28-55 (362)
485 COG4181 Predicted ABC-type tra 97.7 0.00042 9.1E-09 54.1 9.3 26 63-88 33-58 (228)
486 COG0563 Adk Adenylate kinase a 97.7 4.4E-05 9.6E-10 61.0 4.1 29 68-96 2-30 (178)
487 COG3840 ThiQ ABC-type thiamine 97.7 8.3E-05 1.8E-09 58.5 5.4 31 60-90 19-49 (231)
488 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 0.00026 5.7E-09 69.0 10.3 29 62-90 501-529 (710)
489 TIGR02239 recomb_RAD51 DNA rep 97.7 0.0002 4.2E-09 62.7 8.5 40 62-101 92-140 (316)
490 TIGR02203 MsbA_lipidA lipid A 97.7 0.00046 1E-08 65.6 11.8 28 63-90 355-382 (571)
491 COG4586 ABC-type uncharacteriz 97.7 0.00028 6.1E-09 59.1 8.8 30 62-91 46-75 (325)
492 PRK11160 cysteine/glutathione 97.7 0.00018 4E-09 68.3 8.9 28 63-90 363-390 (574)
493 PRK14531 adenylate kinase; Pro 97.7 4.9E-05 1.1E-09 61.2 4.3 30 68-97 4-33 (183)
494 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00041 8.8E-09 58.1 10.0 29 62-90 24-52 (234)
495 TIGR02204 MsbA_rel ABC transpo 97.7 0.00035 7.6E-09 66.5 10.8 29 62-90 362-390 (576)
496 PF09848 DUF2075: Uncharacteri 97.7 0.00017 3.7E-09 64.2 8.1 23 68-90 3-25 (352)
497 TIGR02655 circ_KaiC circadian 97.7 0.00032 6.8E-09 65.2 10.1 77 62-138 259-366 (484)
498 PF05872 DUF853: Bacterial pro 97.7 0.00047 1E-08 61.8 10.6 89 125-227 254-345 (502)
499 cd02021 GntK Gluconate kinase 97.7 4.3E-05 9.4E-10 59.3 3.8 28 69-96 2-29 (150)
500 PF10236 DAP3: Mitochondrial r 97.7 0.0069 1.5E-07 52.9 17.8 47 197-244 258-308 (309)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-54 Score=364.47 Aligned_cols=277 Identities=62% Similarity=1.035 Sum_probs=270.6
Q ss_pred chhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 022768 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~ 81 (292)
.++++..-+|.+.+|.+..|--++.|.++++++.|+++++++|.+.+..|+.+.+.|.++|+.|+.+||+|||||||||.
T Consensus 121 ~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 121 DSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred CcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHH
Q 022768 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (292)
Q Consensus 82 l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~ 161 (292)
+||++|+..+..|+++..+++..+|.|+..+.++++|..++...|+||||||+|.++.++.+.+++.+.+.|++++++|+
T Consensus 201 LAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 201 LAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred HHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHH
Q 022768 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGAD 241 (292)
Q Consensus 162 ~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~d 241 (292)
+++++.+.+++-||++||.++.++|++++++||+..|+||.|+.+.|.+|++-+.+......++|++.|+..++|+|++|
T Consensus 281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAd 360 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGAD 360 (406)
T ss_pred hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 242 LRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 242 i~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
+..+|.+|.+.|++..+..||++||.+|++.+.....
T Consensus 361 lkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 361 LKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999987543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=328.45 Aligned_cols=273 Identities=44% Similarity=0.753 Sum_probs=254.4
Q ss_pred CChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
..|+...-+--+.|+++|+++.|+++.|++|++.+.+|++..+.|.++|+.++++||+|||||+|||++||++|++.+.+
T Consensus 416 i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 416 IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 44555555667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
|+.+.+.++.++++|+.++.++.+|+.++...|+|+||||+|.+...++++.+ .-..+.|..+|++++++....+++
T Consensus 496 FlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 496 FLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred eeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEE
Confidence 99999999999999999999999999999999999999999999988875444 455678889999999998888999
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
||++||+|+.+++++.+++||+..+++++||.+.|.+|++.++++.+...++|++.|+..|+|||++||..+|++|...|
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CcccHHHHHHHHHHHhhhhhhchhhhhhhhc
Q 022768 254 IRAER--DYVIHEDFMKAVRKLNEAKKLESSAHYNADF 289 (292)
Q Consensus 254 ~~~~~--~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (292)
+++.- ..|+.+++.+|++.+.+.-.......|+++.
T Consensus 653 ~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 653 LRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred HHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 99854 4799999999999999988888888887763
No 3
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=279.08 Aligned_cols=269 Identities=49% Similarity=0.864 Sum_probs=258.8
Q ss_pred hCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 9 ALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
-+|-+.+++++.+-....|.+++.++.|++-+++++.+.+..|+.+.+++.+.|+.|++++|++||||+|||.+++++|+
T Consensus 132 vlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~ 211 (408)
T KOG0727|consen 132 VLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 211 (408)
T ss_pred ccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh
Confidence 36888999999887888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
.....|++++.+++..++.|+..+.++.+|+.++.+.|+|+||||+|.++.++.+.+++.+.+.++.|.+++++++++..
T Consensus 212 ~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 212 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred ccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 169 ~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
.-++-+|.+||..+.++|++++++|.+..|.||.|+..+++-++....+....+.++|++.+..+.+..|+.||..+|++
T Consensus 292 ~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 292 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhhh
Q 022768 249 AGMSAIRAERDYVIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 249 a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 277 (292)
|.+.|.+.++-.|...|+.++++......
T Consensus 372 agm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 372 AGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred HhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 99999999999999999999998876543
No 4
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=302.34 Aligned_cols=274 Identities=48% Similarity=0.845 Sum_probs=253.9
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
+..+...+|.+.++.+..+.-...|.++|++|.|++.++++|.+.+..|+...+.|.++|+.++.++||+||||||||++
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 116 SHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred chhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHH
Confidence 44566778988999888777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
++++|+.++.+++.+....+...+.+.....++.+|..+....|+||||||+|.++.++.+..++.+...+..+.+++..
T Consensus 196 AkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 196 AKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 99999999999999999988888899999999999999999999999999999998877666556667788899999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
+++.....++.+|++||.++.+++++++++||+..|+++.|+.++|..||+.++.......++++..++..+.||+++||
T Consensus 276 ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI 355 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADI 355 (398)
T ss_pred hhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHH
Confidence 98877777899999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
..+|++|...|.++++..|+.+|+.+|++.+...
T Consensus 356 ~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 356 AAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998764
No 5
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=279.62 Aligned_cols=275 Identities=49% Similarity=0.855 Sum_probs=264.4
Q ss_pred hhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 022768 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~ 85 (292)
+.-++|.+-++.+-.|.-...|+-.++++.|++.++++|.+.+..|+..++.|..+|+.++.++|+|||||+|||.++++
T Consensus 145 iletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARA 224 (424)
T KOG0652|consen 145 ILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARA 224 (424)
T ss_pred ehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHH
Confidence 56678999899888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 86 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
.|...+..|+.+....+...+.|+..+.++..|..++...|+|+||||+|.++.++.++-..++++.++.++++++++++
T Consensus 225 cAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 225 CAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred HHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHH
Q 022768 166 FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l 245 (292)
+.+..++-||++||+.+-++|++++++|.+..|.||.|+.+.|..|++-+........+++++.|++-+++|++.++..+
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAV 384 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAV 384 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhc
Q 022768 246 CTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLE 280 (292)
Q Consensus 246 ~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~ 280 (292)
|-+|.+.|++++...|+.+|+.+.+.+++..++.+
T Consensus 385 cVEAGMiALRr~atev~heDfmegI~eVqakKka~ 419 (424)
T KOG0652|consen 385 CVEAGMIALRRGATEVTHEDFMEGILEVQAKKKAS 419 (424)
T ss_pred ehhhhHHHHhcccccccHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999876643
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-42 Score=303.72 Aligned_cols=260 Identities=39% Similarity=0.692 Sum_probs=238.6
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
-.|.++|+++.++++++.+|+.++.+|++..+.|..+|+..+.+||++||||+|||.+||++|++.+.+|+.+...++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
+|+|+.++.++.+|.+++.+.|||||+||+|.|.+.++...+ ....+.+.++|.++++.....++.||++||+|+.+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s---~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGS---SVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCc---hhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 999999999999999999999999999999999999877654 34456777888899999888999999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc--CccCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcC--
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA--GIAKHGEIDYEAVVKLAE--GFNGADLRNVCTEAGMSAIRAER-- 258 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~--~~~~~~~~~~~~l~~~~~--g~~~~di~~l~~~a~~~a~~~~~-- 258 (292)
++++++++||+..++++.|+.++|.+|++.... ......+++++.++..+. ||++.|+..+|++|...|+++..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 667779999999999877 99999999999999999988621
Q ss_pred --------------CcccHHHHHHHHHHHhhhhhhchhhhhhh
Q 022768 259 --------------DYVIHEDFMKAVRKLNEAKKLESSAHYNA 287 (292)
Q Consensus 259 --------------~~i~~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (292)
-.++..+|++|++.+.+.-.+.....|+.
T Consensus 741 ~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~ 783 (802)
T KOG0733|consen 741 IDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDR 783 (802)
T ss_pred ccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 14778899999999999777666555553
No 7
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-42 Score=278.05 Aligned_cols=276 Identities=54% Similarity=0.941 Sum_probs=264.4
Q ss_pred chhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 022768 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~ 81 (292)
.+..|+-.+|.-.+|++..|.-+..|.++++++.|+.++++.|.+.+..|+.+.+.|..+|+.|+.++|+|||||+|||.
T Consensus 147 nkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl 226 (435)
T KOG0729|consen 147 NKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTL 226 (435)
T ss_pred cceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhH
Confidence 45566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHH
Q 022768 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (292)
Q Consensus 82 l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~ 161 (292)
.++++|++.+..|+++-.+++..+++|+..+.++++|..++..+.|++|+||+|.+++.+.+...+++++.|+.++++++
T Consensus 227 ~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~ 306 (435)
T KOG0729|consen 227 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 306 (435)
T ss_pred HHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHH
Q 022768 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGAD 241 (292)
Q Consensus 162 ~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~d 241 (292)
+++++.+.+++-|+.+||.|+.+++++.+++|.+..++|..|+.+.|.+|++-+........++-++.++++..+.++.+
T Consensus 307 qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgae 386 (435)
T KOG0729|consen 307 QLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAE 386 (435)
T ss_pred hccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhh
Q 022768 242 LRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 242 i~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 277 (292)
|+++|.+|.+.|++.-+...|..|+.+|+..+..-+
T Consensus 387 irsvcteagmfairarrk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 387 IRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877533
No 8
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-41 Score=270.86 Aligned_cols=274 Identities=53% Similarity=0.902 Sum_probs=263.3
Q ss_pred hhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 022768 5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~ 84 (292)
.+-+-+|.-++|.++-|.-+..|..+++-+.|++.+++++++.+..|...+++|..+|+..+.++|++||||+|||.+++
T Consensus 120 ~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlar 199 (404)
T KOG0728|consen 120 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLAR 199 (404)
T ss_pred HHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh
Q 022768 85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (292)
Q Consensus 85 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 164 (292)
++|+...+.|++++.+++..++.|+..+.++++|-.++...|+|+|+||+|.++..+.+++++++.+.++.+++++++++
T Consensus 200 aVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 200 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred HHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHH
Q 022768 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRN 244 (292)
Q Consensus 165 ~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~ 244 (292)
++....++-+|.+||.-+-+++++++++|++..|.||+|+.+.|.+|++-+.........+++..++....|.|+.++..
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~ 359 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKG 359 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhh
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 245 VCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 245 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
+|.+|.++|++.-+-+||.+|+.-|...+....+
T Consensus 360 vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 360 VCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999988876544
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.5e-40 Score=295.55 Aligned_cols=276 Identities=57% Similarity=0.955 Sum_probs=252.2
Q ss_pred hhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 022768 5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~ 84 (292)
.+..-+|...++.+..+.-...|.++|++|.|++++++++.+++..++.....|..+|+.++.++||+||||||||++|+
T Consensus 104 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 104 AIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred hhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence 44556777777776666667788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh
Q 022768 85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (292)
Q Consensus 85 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 164 (292)
++|++++.+++.+++..+...+.+.....++.+|..+....|+||||||+|.++..+.+.....+.+.+..+..++..++
T Consensus 184 aia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 184 AVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred HHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 99999999999999999998888998999999999999999999999999999988776666566778888889998888
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHH
Q 022768 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRN 244 (292)
Q Consensus 165 ~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~ 244 (292)
+....+++.||+|||.++.+++++++++||+..+.+++|+.++|.+||+.++.......++++..++..+.||+++|+..
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 77777789999999999999999999999999999999999999999999998887777899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhc
Q 022768 245 VCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLE 280 (292)
Q Consensus 245 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~ 280 (292)
+|++|...|.+++...|+.+|+.+|+..+......+
T Consensus 344 l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 344 ICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999998866654
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=282.20 Aligned_cols=269 Identities=37% Similarity=0.620 Sum_probs=234.6
Q ss_pred hhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
....+-+..|.+.|++|.|++++++-|++.+..|+.-++.|.... .|.+++|++||||||||.|||++|.+++..|+.|
T Consensus 198 lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 198 LERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred HHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 345566778899999999999999999999999999999988755 6789999999999999999999999999999999
Q ss_pred eccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC----CCeE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL----GKVK 173 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~ 173 (292)
+.+.+.+++.|+.++.++.+|..++.+.|++|||||||.|+..++..+ ......+.=.++|-++++.... .-|+
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm 354 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDGVQGTLENSKVVM 354 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--chhHHHHHHHHHHHHhhccccccccceeEE
Confidence 999999999999999999999999999999999999999998885543 2333333334556565544222 2388
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
|+++||.|++++.++++ ||...|++|.|+.+.|..+++..+.......+++++.++..++|||+.||..+|++|.+.+
T Consensus 355 VLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~ 432 (491)
T KOG0738|consen 355 VLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMA 432 (491)
T ss_pred EEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 88999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-----------------CCcccHHHHHHHHHHHhhhhh---hchhhhhhhhcCC
Q 022768 254 IRAE-----------------RDYVIHEDFMKAVRKLNEAKK---LESSAHYNADFGK 291 (292)
Q Consensus 254 ~~~~-----------------~~~i~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 291 (292)
.++. ...|+.+||.+|++.+++.-+ ....+.|.+.||+
T Consensus 433 mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 433 MRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 8852 125899999999999998655 4457788899986
No 11
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=280.75 Aligned_cols=285 Identities=79% Similarity=1.200 Sum_probs=272.4
Q ss_pred CchhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHH
Q 022768 1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80 (292)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT 80 (292)
+++++|++-+|++++ .++++.++.+..++|+++.|...+..++.+.+..|+.+..++.++|+.++.+++||||||+|||
T Consensus 102 ittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKT 180 (388)
T KOG0651|consen 102 ITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKT 180 (388)
T ss_pred eeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchh
Confidence 367899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHH
Q 022768 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (292)
Q Consensus 81 ~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l 160 (292)
.+|++++..+++.++.+..+.+.+.+.|+..+.+++.|+.++...||++|+||+|.+++.+..+.+..+++++.+|++++
T Consensus 181 lla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLl 260 (388)
T KOG0651|consen 181 LLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELL 260 (388)
T ss_pred HHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHH
Q 022768 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGA 240 (292)
Q Consensus 161 ~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 240 (292)
+++++.....++-+|.|+|+++.++++|.+++|++..+..|.|+...|..|++-..........++.+.+..+++|+++.
T Consensus 261 nqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~ga 340 (388)
T KOG0651|consen 261 NQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGA 340 (388)
T ss_pred HhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChH
Confidence 99999999999999999999999999999999999999999999999999999888877777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhchhhhhh
Q 022768 241 DLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYN 286 (292)
Q Consensus 241 di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (292)
|++..|.+|-..|....+..+..+++..++..+...+..+...+|.
T Consensus 341 d~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~ 386 (388)
T KOG0651|consen 341 DLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKKLELSLDYK 386 (388)
T ss_pred HHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999998877766666664
No 12
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=294.07 Aligned_cols=276 Identities=50% Similarity=0.872 Sum_probs=254.5
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
+..+...+|.++++.+..+.-...|+.+|++|.|++++++++.+++..++.....+..+|+.++.+++|+||||||||++
T Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 154 THSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL 233 (438)
T ss_pred CCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 34566678888999998887788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
++++|++++.+++.+....+...+.+.....++.+|..+....|+||||||+|.++.++.+..++...+.+..+.+++..
T Consensus 234 AraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 234 AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred HHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999887766666777888889999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
++++....++.||++||.++.+++++.+++||+..|.|+.|+.++|.+||+.++.......+++++.++..+.|++++||
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI 393 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADI 393 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHH
Confidence 88776667899999999999999999998999999999999999999999999988877788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
..+|.+|...|.++++..|+.+||.+|+..+...+.
T Consensus 394 ~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~ 429 (438)
T PTZ00361 394 KAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKK 429 (438)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999866443
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=290.83 Aligned_cols=244 Identities=41% Similarity=0.678 Sum_probs=230.7
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
-+++|+++.|+++++++|++.+.. ++++..|.++|-.-+.+|||.||||||||.||+++|.+.+.||++...+++-..+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 467899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCCh
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~ 186 (292)
+|...+.++.+|+.++.+.||||||||+|.+++++... ........+.+++-+++++..+.+++||++||.|+.+++
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999998777332 122677889999999999999999999999999999999
Q ss_pred hhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 187 ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 187 ~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
++.+++||+.+|.+|.||..-|.+|++.|+.......++|+..+++-+.||++.|+.++++.|..+|...+...|++.++
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~L 534 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHL 534 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 022768 267 MKAVRKLN 274 (292)
Q Consensus 267 ~~a~~~~~ 274 (292)
+-|..++.
T Consensus 535 E~akDrIl 542 (752)
T KOG0734|consen 535 EFAKDRIL 542 (752)
T ss_pred hhhhhhee
Confidence 99988765
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=273.40 Aligned_cols=269 Identities=51% Similarity=0.901 Sum_probs=258.3
Q ss_pred CCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+-.+++|-++-|.-+..|.-++.++.|++.++++|++.+..|+.+++.|...|+.++.+|++||+||||||.||+++|+.
T Consensus 163 L~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 163 LQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred eccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 44668888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC
Q 022768 90 IDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (292)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 169 (292)
....|+++..++++.++.|+..+.++++|+.+..+.|+|+||||+|.++.++.+..++..+++|+.+++++++++++...
T Consensus 243 TSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred cchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 022768 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA 249 (292)
Q Consensus 170 ~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a 249 (292)
+.+-||.+||.-+.++|++.+++|++..|.|+.||...+..|+.-+.+......+++++.+...-+.+|+.||..+|.+|
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888999999999998999999999999999
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 250 GMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 250 ~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
..+|++..+-.|+++||..|.+.+--.+.
T Consensus 403 GllAlRerRm~vt~~DF~ka~e~V~~~K~ 431 (440)
T KOG0726|consen 403 GLLALRERRMKVTMEDFKKAKEKVLYKKK 431 (440)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998876553
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-39 Score=286.81 Aligned_cols=268 Identities=41% Similarity=0.660 Sum_probs=234.6
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
+..++++++|.++.|++....+|.+.+.. +..++.|..+|+.|++++|||||||+|||.+|+++|++++.|++.++..+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe 258 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE 258 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh
Confidence 44566789999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-CCCCCeEEEEEeCC
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNR 180 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~vi~t~~~ 180 (292)
+.+...|+.++.++++|+.++...|||+||||+|.+.+++...+-+..+.+...|...++.+... .....++||++||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999988885544444444444444444444321 22357999999999
Q ss_pred CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC--
Q 022768 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER-- 258 (292)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~-- 258 (292)
|+.++++|++.+||+.+|-+..|+..+|.+|++..+.+..+..++++..|+..+.||.+.|+..+|.+|...|++|..
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988621
Q ss_pred ------------------------------------------------------------CcccHHHHHHHHHHHhhhhh
Q 022768 259 ------------------------------------------------------------DYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 259 ------------------------------------------------------------~~i~~~~~~~a~~~~~~~~~ 278 (292)
-.|+.+||.+|+..+++...
T Consensus 419 ~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSak 498 (802)
T KOG0733|consen 419 SSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAK 498 (802)
T ss_pred ccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchh
Confidence 03567888888888888877
Q ss_pred hch-----hhhhhhhcC
Q 022768 279 LES-----SAHYNADFG 290 (292)
Q Consensus 279 ~~~-----~~~~~~~~~ 290 (292)
++. .+.|+++++
T Consensus 499 REGF~tVPdVtW~dIGa 515 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGA 515 (802)
T ss_pred cccceecCCCChhhccc
Confidence 776 567888765
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=289.18 Aligned_cols=263 Identities=38% Similarity=0.667 Sum_probs=233.3
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
.-++..|.++|+|+.|++++|.+|++.++.|+..+++|.. |+.+..+||+|||||||||.+||++|.++...|+.+...
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 3457899999999999999999999999999999998864 666677899999999999999999999999999999999
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCc--chHHHHHHHHHHHHHhhCCC--CCCCeEEEE
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS--ADREIQRTLMELLNQLDGFD--QLGKVKMIM 176 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~--~~~~~~vi~ 176 (292)
++.++|+|+.+.+++++|.+++...|||||+||+|.++++++.++++ ... +...+++.+++++. ....++||+
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMD---RVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMD---RVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHH---HHHHHHHHHhhcccCCCCCceEEEe
Confidence 99999999999999999999999999999999999999998776543 344 44455666666665 556899999
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCC-CHHHHHHHHHHHHcCccCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHAAGIAKHGEIDYEAVVKLA-EGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~di~~l~~~a~~~a~ 254 (292)
+||+|+.+++++++++||+.-+++.++ |.+.+..+++...+.+..+.++++..++... ..|+++|+..+|..|+..|.
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 5567788999999999999999999999876 57999999999999999999
Q ss_pred HhcC-----------------CcccHHHHHHHHHHHhhhhhhchhhhhhh
Q 022768 255 RAER-----------------DYVIHEDFMKAVRKLNEAKKLESSAHYNA 287 (292)
Q Consensus 255 ~~~~-----------------~~i~~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (292)
+|.- -.|+++|+.++.+++++..+......||.
T Consensus 897 kR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~ 946 (953)
T KOG0736|consen 897 KRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEM 946 (953)
T ss_pred HHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 8721 16899999999999999988888877764
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=8.7e-38 Score=278.15 Aligned_cols=268 Identities=61% Similarity=1.020 Sum_probs=242.6
Q ss_pred hhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 022768 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~ 85 (292)
+..-+|...++.+..+--...|.++|+++.|+++++++|.+++..++.+...+..+|+.++.+++|+||||||||+++++
T Consensus 96 ~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 96 IVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred EEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHH
Confidence 34446766777666666678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 86 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
+++.++.+++.+....+...+.+.....++.+|..+....|++|+|||+|.++.++.+...+.+.+.+..+..++..+++
T Consensus 176 ia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 176 VAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred HHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 99999999999998888888888888889999999988899999999999998777666666677788889999988887
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHH
Q 022768 166 FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l 245 (292)
....+++.+|+|||.++.+++++++++||+..+.++.|+.++|.+|++.+........++++..++..+.||+++|+..+
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHH
Confidence 66667899999999999999999998999999999999999999999999887777777899999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 022768 246 CTEAGMSAIRAERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 246 ~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 273 (292)
+.+|...|..+++..|+.+|+.+|+..+
T Consensus 336 ~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 336 CTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.3e-39 Score=258.33 Aligned_cols=243 Identities=37% Similarity=0.581 Sum_probs=216.9
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...+.++|++++|++++++...-.+.. +.+++.|..|. +++|||+||||||||++|+++|++.+.|++.+....++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 456889999999999999887655554 77778887765 77999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+.++|+..+.+.+++..+....|||+||||+|.++-.+.-+.- -.+..+....++..++++..+.+++.|++||+++.
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999999643322111 12344666788888888888899999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhcCCccc
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLR-NVCTEAGMSAIRAERDYVI 262 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~-~l~~~a~~~a~~~~~~~i~ 262 (292)
+++++++ ||...|.|..|+.++|.+|++.++...+..-+.++..++..+.|+|++||. .++..|...|+..++..|+
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhh
Confidence 9999999 999999999999999999999999999888888999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 022768 263 HEDFMKAVRKLN 274 (292)
Q Consensus 263 ~~~~~~a~~~~~ 274 (292)
.+|+..|+..-.
T Consensus 345 ~edie~al~k~r 356 (368)
T COG1223 345 REDIEKALKKER 356 (368)
T ss_pred HHHHHHHHHhhc
Confidence 999999998743
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=284.98 Aligned_cols=248 Identities=42% Similarity=0.707 Sum_probs=233.3
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
..++|.|+.|+++++++|++++.. +++++.|.++|+..++++||+||||||||.|||++|.+.+.||+.++.+++...+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 349999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCC-CCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS-EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
.+.....++.+|..++...|+|++|||+|.++..+++ .....+.+....|.+++-++++......++++++||.++.++
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999988853 344667888899999999999998888899999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHH
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHE 264 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~ 264 (292)
+++++++||+..++++.|+...|.+|++.+++..... .+.++..++.++.||++.||.++|++|...|.++....|+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTK 544 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchh
Confidence 9999999999999999999999999999999987764 778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 022768 265 DFMKAVRKLNE 275 (292)
Q Consensus 265 ~~~~a~~~~~~ 275 (292)
++.+|++++..
T Consensus 545 ~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 545 DLEYAIERVIA 555 (774)
T ss_pred hHHHHHHHHhc
Confidence 99999996654
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.4e-36 Score=289.39 Aligned_cols=264 Identities=45% Similarity=0.783 Sum_probs=235.2
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
..|.++|+++.|++++++.|.+.+.+++.....+..+|+.++.++||+||||||||++++++|++++.+++.+.+.++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.|+.+..++.+|..++...|+||||||+|.+++.++.... .......+.+++..+++.....+++||+|||.++.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999887643322 223455666788888877777899999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAE------- 257 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~------- 257 (292)
++++++++||+..+++++|+.++|.+||+.+..+.....+++++.++..+.||+++||..+|++|...|+.+.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999999988888888999999999999999999999999999988742
Q ss_pred -----------CCcccHHHHHHHHHHHhhhhhhch---hhhhhhhcC
Q 022768 258 -----------RDYVIHEDFMKAVRKLNEAKKLES---SAHYNADFG 290 (292)
Q Consensus 258 -----------~~~i~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 290 (292)
...|+.+|+.+|++.+.+..+.+. ...|.+.|+
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~ 730 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 126999999999999998766654 445555554
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5e-36 Score=276.57 Aligned_cols=251 Identities=42% Similarity=0.715 Sum_probs=227.7
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...|.++|++++|++++++++.+.+.. +.....+.++|...++++||+||||||||++++++|++++.+++.+++..+.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 456889999999999999999998876 7888889999999999999999999999999999999999999999999988
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
..+.+.....++.+|..++...|+||||||+|.++.++..............+..++..++++....+++||+|||.++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 88888888899999999999999999999999998777655444455666778888888888777788999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIH 263 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~ 263 (292)
+++++++++||+..+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...|.+++...|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999987766677889999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHhh
Q 022768 264 EDFMKAVRKLNE 275 (292)
Q Consensus 264 ~~~~~a~~~~~~ 275 (292)
+|+.+|+..+..
T Consensus 286 ~~l~~a~~~~~~ 297 (495)
T TIGR01241 286 NDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=254.52 Aligned_cols=263 Identities=37% Similarity=0.672 Sum_probs=225.4
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...|++.|+++.|++.+++.|++.+..|+.-+.+|..-. .|.+++||+||||||||+||+++|.+.+..|+.++.+++.
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 356899999999999999999999999988777775422 5688999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-CCCCCeEEEEEeCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPD 182 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~vi~t~~~~~ 182 (292)
+++.|+.++.++.+|..++.++|+||||||+|.+++.++++-+...+.+. .+++-++++. ....++.|+++||.|+
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIK---TEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIK---TEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHH---HHHHHhhhccccCCCceEEEecCCCch
Confidence 99999999999999999999999999999999999887665554444333 3555556544 4445899999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC---
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER--- 258 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~--- 258 (292)
.++.++++ ||...|++|.|+...|..+++.++...... .+.|+..|+..++|||+.||.-+++.|.+...++..
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAt 358 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSAT 358 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhh
Confidence 99999999 999999999999999999999998876544 778999999999999999999999988887765411
Q ss_pred -------------------------------------------CcccHHHHHHHHHHHhhhhh---hchhhhhhhhcCCC
Q 022768 259 -------------------------------------------DYVIHEDFMKAVRKLNEAKK---LESSAHYNADFGKE 292 (292)
Q Consensus 259 -------------------------------------------~~i~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 292 (292)
+.||+.|+..+++...+.-. ...+..|...||.|
T Consensus 359 hFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 359 HFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred hhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 36899999999999988543 44467888888876
No 23
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=268.07 Aligned_cols=256 Identities=40% Similarity=0.689 Sum_probs=243.6
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.+...+....++|.++.|.+++++++.+.++. +++...|..+|..-+.+++++||||||||.+||++|.+.+.|++.++
T Consensus 137 ak~~~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS 215 (596)
T COG0465 137 AKLYLEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 215 (596)
T ss_pred HHHhcccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc
Confidence 34444557789999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred ccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe
Q 022768 99 SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (292)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~ 178 (292)
.+++...++|.....++.+|..++.+.|||+||||+|.++..++.+..+...+....+.+++.+++++..+..++++++|
T Consensus 216 GS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT 295 (596)
T COG0465 216 GSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred chhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC
Confidence 99999999999999999999999999999999999999999998887888899999999999999999888899999999
Q ss_pred CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 022768 179 NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER 258 (292)
Q Consensus 179 ~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~ 258 (292)
|.++.+++++++++||+..+.++.||...|.+|++.++.......++++..+++.+.|+++.|+.+++++|...|.+++.
T Consensus 296 NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~ 375 (596)
T COG0465 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK 375 (596)
T ss_pred CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhh
Q 022768 259 DYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 259 ~~i~~~~~~~a~~~~~~ 275 (292)
..|++.++.+|..++..
T Consensus 376 ~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 376 KEITMRDIEEAIDRVIA 392 (596)
T ss_pred eeEeccchHHHHHHHhc
Confidence 99999999999999874
No 24
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.4e-35 Score=272.97 Aligned_cols=249 Identities=38% Similarity=0.693 Sum_probs=225.7
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
..+.++|++++|++++++++.+.+.. +.....+..+|...+.++||+||||||||++++++|.+.+.+++.+++..+..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999998876 77788899999999999999999999999999999999999999999998887
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.+.....++.+|..+....|+||||||+|.++..++........+.+..+..++..+++.....++++|++||.++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 77777778889999999999999999999999987776555555667778888999888887777789999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHH
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHE 264 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~ 264 (292)
++++++++||+..+.++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...|.+++...|+.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999876666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 022768 265 DFMKAVRKLN 274 (292)
Q Consensus 265 ~~~~a~~~~~ 274 (292)
|+.+|+.++.
T Consensus 415 dl~~Ai~rv~ 424 (638)
T CHL00176 415 EIDTAIDRVI 424 (638)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.1e-34 Score=261.40 Aligned_cols=248 Identities=28% Similarity=0.412 Sum_probs=210.5
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
+...+++.+|++|.|++..++.+.+....+ .....++|+.+++++||+||||||||++|+++|++++.+++.+++..
T Consensus 218 le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 218 LEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 344567889999999999999988765432 12345678889999999999999999999999999999999999999
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+.+.+.|+.+..++.+|..+....||||+|||+|.++.+..... ........+..++..+.. ...+++||+|||.+
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~ 370 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNI 370 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCCh
Confidence 99999999999999999999999999999999999986543222 223344555566665552 34579999999999
Q ss_pred CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 022768 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERD 259 (292)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~ 259 (292)
+.+++++++++||+..++++.|+.++|.+||+.++...... .+.+++.++..+.|||++||.++|.+|...|..+++
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~- 449 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR- 449 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 99999999999999999999999999999999999865432 468899999999999999999999999999987765
Q ss_pred cccHHHHHHHHHHHhhhh
Q 022768 260 YVIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 260 ~i~~~~~~~a~~~~~~~~ 277 (292)
.++.+|+.+|++.+.+.+
T Consensus 450 ~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 450 EFTTDDILLALKQFIPLA 467 (489)
T ss_pred CcCHHHHHHHHHhcCCCc
Confidence 589999999999999853
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-34 Score=264.17 Aligned_cols=251 Identities=45% Similarity=0.787 Sum_probs=229.7
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...+.++|.++.|++++++.+.+.+..++...+.+...++.++.++||+||||||||++++++|++++.+++.+...++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+++.|++++.++.+|..++...|+||||||+|.++..++....+.. .+.+.+++..+++.....+++||++||.++.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 9999999999999999999999999999999999887754333222 5677788888888888889999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CCc
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK--HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAE-RDY 260 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~-~~~ 260 (292)
+++++++++||+..+++++|+.++|.++++.++..... ..++++..++..+.||++.||..+|++|...+..+. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999985443 467899999999999999999999999999999998 678
Q ss_pred ccHHHHHHHHHHHhhhh
Q 022768 261 VIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 261 i~~~~~~~a~~~~~~~~ 277 (292)
|+.+|+.+|++.+.+..
T Consensus 471 ~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 471 VTLDDFLDALKKIKPSV 487 (494)
T ss_pred ccHHHHHHHHHhcCCCC
Confidence 99999999999976653
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=238.98 Aligned_cols=261 Identities=38% Similarity=0.682 Sum_probs=222.2
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
.--.++|+++.|++++++.+++.+..|++.++.|..-+ ..+..+||++||||+|||.+|+++|++.+..++.+..+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 33458999999999999999999999999999996433 47788999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHH-HHHHHHhhCCCCCC--CeEEEEEeCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLG--KVKMIMATNR 180 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~--~~~vi~t~~~ 180 (292)
+++.|+.++.++.+|..+..-.|+|+||||+|.+.+.++ ..+.+....+ .+++...+++.... +++|+++||+
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 999999999999999999999999999999999987772 2233444333 36666666665555 4999999999
Q ss_pred CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Q 022768 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA---- 256 (292)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~---- 256 (292)
|.+++.++.+ |+...++++.|+..+|.+|++.++.......++|+..++..++|||+.||..+|..|.....+.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999998877653
Q ss_pred c------------------------CCcccHHHHHHHHHHHhhhhh-----hchhhhhhhhcCC
Q 022768 257 E------------------------RDYVIHEDFMKAVRKLNEAKK-----LESSAHYNADFGK 291 (292)
Q Consensus 257 ~------------------------~~~i~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~ 291 (292)
+ ...+.++|+..+...+..... -.....|++.+|+
T Consensus 319 ~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 319 ETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred cccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 1 246789999999996655311 1225567776665
No 28
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-33 Score=251.61 Aligned_cols=225 Identities=41% Similarity=0.761 Sum_probs=212.5
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccC
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIG 108 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~ 108 (292)
+.|.++.|+.++++.|++.+.+|-+-...|.+.+++-..++|+|||||+|||.+|.+++...+..++.+...++.+++.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhh
Q 022768 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPAL 188 (292)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l 188 (292)
..++.++.+|.++..++|||||+||+|.++++++-..++... +...+++.++++...-.++.++++|.+|+.+++++
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTD---RVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpAL 820 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD---RVVNQLLTELDGAEGLDGVYILAATSRPDLIDPAL 820 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchH---HHHHHHHHhhccccccceEEEEEecCCccccCHhh
Confidence 999999999999999999999999999999999777777655 45566777888777778999999999999999999
Q ss_pred cCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 022768 189 LRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 189 ~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
++++|++..++-+.|+..+|.+|++..........++|++.++..++||+++|+..++..|...|..+
T Consensus 821 LRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 821 LRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999988765
No 29
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.6e-32 Score=255.88 Aligned_cols=250 Identities=41% Similarity=0.677 Sum_probs=224.9
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
......|+++.|.+.+++++.+.+.. +.....+..++...+.+++|+||||+|||+++++++++++.+++.+++..+..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34567899999999999999998876 55666777777777888999999999999999999999999999999998888
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.+.....++.+|..+....|+||||||+|.++..+.........+....+..++..++++....++++|++||.++.+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 88888888899999999999999999999999988776655555566677888888888888778899999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHH
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHE 264 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~ 264 (292)
++++++++||+..+.++.|+.++|.+||+.++.......++++..++..+.||+++|+..+|++|...|.+++...|+.+
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999988777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 022768 265 DFMKAVRKLNE 275 (292)
Q Consensus 265 ~~~~a~~~~~~ 275 (292)
|+.+|...+..
T Consensus 384 d~~~a~~~v~~ 394 (644)
T PRK10733 384 EFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHHhc
Confidence 99999987754
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.8e-32 Score=243.67 Aligned_cols=256 Identities=38% Similarity=0.639 Sum_probs=206.2
Q ss_pred hhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc----
Q 022768 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---- 93 (292)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---- 93 (292)
...+.-...|+++|++|.|++++++++.+.+..++..+..|..+|+.+++++||+||||||||++++++|+.++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 3445557889999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ------EEEEeccchhccccChHHHHHHHHHHHhhhC----CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh
Q 022768 94 ------FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (292)
Q Consensus 94 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 163 (292)
++.+...++...+.++++..++.+|..++.. .|+||||||+|.++.+++.+.+. ......+..++..+
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~L 325 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSEL 325 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHh
Confidence 4456666777888899999999999888753 68999999999998776443222 12234556778888
Q ss_pred hCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-cCC---------CCCCHHHHHHH
Q 022768 164 DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKH---------GEIDYEAVVKL 233 (292)
Q Consensus 164 ~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-~~~---------~~~~~~~l~~~ 233 (292)
++....+++++|+|||.++.+++++++++||+..|+|++|+.++|.+||+.++... ... ...+...+...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQR 405 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHH
Confidence 87777778999999999999999999999999999999999999999999988642 210 01112222211
Q ss_pred -----------------------------cCCCCHHHHHHHHHHHHHHHHHhc----CCcccHHHHHHHHHHHhh
Q 022768 234 -----------------------------AEGFNGADLRNVCTEAGMSAIRAE----RDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 234 -----------------------------~~g~~~~di~~l~~~a~~~a~~~~----~~~i~~~~~~~a~~~~~~ 275 (292)
++.+|++.|..++.+|...|+++. ...++.+|+..|+.+--.
T Consensus 406 av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 406 AVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred HHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhc
Confidence 235689999999999999998773 347899999998876543
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.3e-31 Score=252.57 Aligned_cols=263 Identities=43% Similarity=0.730 Sum_probs=226.1
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
..+.++|++|.|++++++.+.+++..++..+..+..+|+.++.+++|+||||||||++++++|++++.+++.+++..+..
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.+.....++.+|..+....|++|+|||+|.++.++.............. ++..++.......+++|+++|.++.+
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~---Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQ---LLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHH---HHHHhhccccCCCEEEEeecCChhhc
Confidence 888899999999999999999999999999999877644433333444444 44444444555689999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC------
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER------ 258 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~------ 258 (292)
++++++++||...+.++.|+.++|.+|++.+........+.+++.++..+.||++.|+..+++.|...+..+..
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~ 407 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN 407 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999989999999999999999999999988877777788899999999999999999999999998876521
Q ss_pred -------------CcccHHHHHHHHHHHhhhhhhch-----hhhhhhhcC
Q 022768 259 -------------DYVIHEDFMKAVRKLNEAKKLES-----SAHYNADFG 290 (292)
Q Consensus 259 -------------~~i~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 290 (292)
..++.+|+.+|+..+.+....+. ...|+++.|
T Consensus 408 ~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g 457 (733)
T TIGR01243 408 FEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGG 457 (733)
T ss_pred cccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhccc
Confidence 25788999999999887654333 457777766
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=3.1e-30 Score=254.26 Aligned_cols=216 Identities=22% Similarity=0.310 Sum_probs=178.9
Q ss_pred cCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc-------------------------
Q 022768 52 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY------------------------- 106 (292)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~------------------------- 106 (292)
.++++...++|+.++++||++||||||||.+||++|.+.+.|++.+++.++...+
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 3567788999999999999999999999999999999999999999998887532
Q ss_pred ----------------cChH--HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC--
Q 022768 107 ----------------IGES--ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-- 166 (292)
Q Consensus 107 ----------------~~~~--~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 166 (292)
.+.. ...++.+|..|+...||||+|||+|.++.+. ... ..+..++..+++.
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~~--ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SNY--LSLGLLVNSLSRDCE 1766 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cce--ehHHHHHHHhccccc
Confidence 0111 1237889999999999999999999996541 111 1244555566543
Q ss_pred -CCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHH--cCccCCC-CCCHHHHHHHcCCCCHHHH
Q 022768 167 -DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA--AGIAKHG-EIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 167 -~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~--~~~~~~~-~~~~~~l~~~~~g~~~~di 242 (292)
....+++||||||.|+.+|+++++++||+..|.++.|+..+|.+++.... .+..... .++++.++..+.||+++|+
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 34568999999999999999999999999999999999999998877543 3333332 3689999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
..+|++|...|..+++..|+.+++..|+.++...
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=232.50 Aligned_cols=255 Identities=39% Similarity=0.669 Sum_probs=228.4
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
+++. .++.|.......+...+..++.....+...|+.+++++|+|||||+|||.+++++|++.+..++.+++.++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhhCC-CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 107 IGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
.|+++..++..|..+.... |++++|||+|.+++++..... ........++. .+++..+.+++++|+++|++..++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqllt---L~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLT---LLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHH---HHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999988 999999999999987644322 33444444444 444445667999999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHED 265 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~ 265 (292)
+++++ +||+..+.+..|+..+|.+|++.+........+.++..++..+.||.++|+..+|.+|...+.++ +.++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99998 89999999999999999999999999887777789999999999999999999999999999888 8899
Q ss_pred HHHHHHHHhhhhhhch-----hhhhhhhcCCC
Q 022768 266 FMKAVRKLNEAKKLES-----SAHYNADFGKE 292 (292)
Q Consensus 266 ~~~a~~~~~~~~~~~~-----~~~~~~~~~~~ 292 (292)
+..|...+++...++. ++.|++++|-|
T Consensus 409 ~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE 440 (693)
T KOG0730|consen 409 FQEALMGIRPSALREILVEMPNVSWDDIGGLE 440 (693)
T ss_pred HHHHHhcCCchhhhheeccCCCCChhhccCHH
Confidence 9999999999877655 78999999854
No 34
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=226.76 Aligned_cols=269 Identities=35% Similarity=0.621 Sum_probs=224.3
Q ss_pred hhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.+.+-+-..-+++.|+++.|++.+++.+.+++.+|......|..+. .+.+++|+.||||+|||.+++++|.+.+..++.
T Consensus 138 ~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 3344455667889999999999999999999999999888888766 457789999999999999999999999999999
Q ss_pred EeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh--CCCCCCCeEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GFDQLGKVKM 174 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~v 174 (292)
+....+.++++|+.+..++.+|..++...|+|+||||+|.++.++.++....+.. ...+++-+.. ...+.+++++
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr---~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRR---LKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchh---hhhHHHhhhccccCCCCCeEEE
Confidence 9999999999999999999999999999999999999999998885544433332 2233333322 1244458999
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA-KHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
|+|||.|+.++.++++ ||...+++|.|+.+.|..+|+..+.... ...+.+++.++..++||+++||.++|.+|.+--
T Consensus 294 igaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p 371 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGP 371 (428)
T ss_pred EecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCc
Confidence 9999999999999998 9999999999999999999999998663 335578999999999999999999999998755
Q ss_pred HHhc-------------CCcccHHHHHHHHHHHhhhhhhch---hhhhhhhcCC
Q 022768 254 IRAE-------------RDYVIHEDFMKAVRKLNEAKKLES---SAHYNADFGK 291 (292)
Q Consensus 254 ~~~~-------------~~~i~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~ 291 (292)
++.. ...++..|+..+...+.+.-+.+. ...|++.||.
T Consensus 372 ~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 372 LRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred hhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 4432 236788899999999998665554 5677787774
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.5e-28 Score=227.80 Aligned_cols=256 Identities=39% Similarity=0.658 Sum_probs=214.0
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cEEE
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLK 96 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~~~ 96 (292)
+-.....+.|+++.|++.++..|++.+..|+...+.|..+++.+++++|++||||||||..++++|..+.. .++-
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm 334 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM 334 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh
Confidence 33445678999999999999999999999999999999999999999999999999999999999998833 3344
Q ss_pred EeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
-...+..++++|+.++.++.+|..++.+.|+|+|+||+|-+++.+++.+......+...|+ ..++++...+.++||+
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLL---aLmdGldsRgqVvvig 411 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLL---ALMDGLDSRGQVVVIG 411 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHH---HhccCCCCCCceEEEc
Confidence 4456677889999999999999999999999999999999988876655544444444444 4555667778999999
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
+||++..+++++++++||+.+++|+.|+.+.|.+|+..+...+... ..--...++..+.||.++||+.+|.+|...+.+
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~ 491 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALR 491 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999887765422 112357789999999999999999999999988
Q ss_pred hcCC----------------cccHHHHHHHHHHHhhhhhhc
Q 022768 256 AERD----------------YVIHEDFMKAVRKLNEAKKLE 280 (292)
Q Consensus 256 ~~~~----------------~i~~~~~~~a~~~~~~~~~~~ 280 (292)
+..+ .|...|+..|+..+.+...++
T Consensus 492 r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 492 RSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred cccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 7432 467777888877777655443
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.4e-26 Score=198.54 Aligned_cols=205 Identities=19% Similarity=0.278 Sum_probs=151.0
Q ss_pred CCCccccccc-cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc
Q 022768 27 GNVSYSAVGG-LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (292)
Q Consensus 27 ~~~~~~~l~g-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~ 105 (292)
...+|+++.| +.-...-+.+.+.. ..+.....+|+.++..++|+||||+|||.+|+++|++++.+++.++..++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~h--i~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVH--IAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHH--HHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 4567777733 33222222222211 12223334678899999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHhhh-----CCCEEEEEcccccccCCcCCCCCcchHHH-HHHHHHHHHHh-----hC----CCCCC
Q 022768 106 YIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREI-QRTLMELLNQL-----DG----FDQLG 170 (292)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~-----~~~~il~lDe~d~l~~~~~~~~~~~~~~~-~~~l~~~l~~~-----~~----~~~~~ 170 (292)
+.|+.++.++.+|..+.. ..||||||||+|.+++++...+....... ...|+.+++.. .+ .....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999999875 36999999999999988753322222211 23444443321 11 13456
Q ss_pred CeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCC
Q 022768 171 KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG 236 (292)
Q Consensus 171 ~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g 236 (292)
+++||+|||+++.|++++++++||+..+ ..|+.++|.+|++.++.....+ ..++..|+..+.|
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 8999999999999999999999998864 6899999999999999875443 3555666666655
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=204.43 Aligned_cols=249 Identities=37% Similarity=0.614 Sum_probs=203.4
Q ss_pred CCCcccc--ccccHHHHHHHH-HHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-cEEEEeccch
Q 022768 27 GNVSYSA--VGGLSDQIRELR-ESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-NFLKVVSSAI 102 (292)
Q Consensus 27 ~~~~~~~--l~g~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-~~~~~~~~~~ 102 (292)
|.-.|.+ +.|++.....+. ++...-.--+....++|+..-.++|||||||||||.+||.+.+.++. +=-.+|..++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5566666 678877765543 33333345578899999999999999999999999999999998854 3455788899
Q ss_pred hccccChHHHHHHHHHHHhhh--------CCCEEEEEcccccccCCcCCCC--CcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 103 IDKYIGESARLIREMFGYARD--------HQPCIIFMDEIDAIGGRRFSEG--TSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--------~~~~il~lDe~d~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
.++|+|+++..++.+|..+.. ..-.|+++||+|.++..+++.. ++.... ...+++..+++.....++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~---VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHH---HHHHHHHhcccHHhhhcE
Confidence 999999999999999998854 2235999999999998886643 334443 344555666666666799
Q ss_pred EEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC----ccCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG----IAKHGEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~----~~~~~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
.||+.||+.+.++++|++++|+...++++.||...|.+|++-+... -....++|++.|+.++.+||++++..+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999998855542 245688999999999999999999999999
Q ss_pred HHHHHHHhcC---------------CcccHHHHHHHHHHHhhhhh
Q 022768 249 AGMSAIRAER---------------DYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 249 a~~~a~~~~~---------------~~i~~~~~~~a~~~~~~~~~ 278 (292)
|...|..+.- -.|+++|+..|+.++.+.+-
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 9999988732 27899999999999998654
No 38
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.91 E-value=7.9e-24 Score=170.65 Aligned_cols=204 Identities=24% Similarity=0.294 Sum_probs=138.4
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
..++...+|.+|++++|+++.+..+.-++...... ..+-.+++||||||+||||+|+.+|++++.++...+.
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 45566788999999999999999988777643211 1334689999999999999999999999999988776
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-----CCC-------
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-----GFD------- 167 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~------- 167 (292)
..+.. .++ +..++... ....||||||+|++ +...++.|+..++... +..
T Consensus 84 ~~i~k--~~d----l~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 84 PAIEK--AGD----LAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp CC--S--CHH----HHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred hhhhh--HHH----HHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceee
Confidence 44321 112 22222222 23479999999999 8899999999888532 111
Q ss_pred -CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHH
Q 022768 168 -QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 168 -~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l 245 (292)
+.+++.+|++|+....+++++++ ||+...++..++.++..+|++.......+. .+.....++.++.| +|+-...+
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHH
Confidence 11368999999999999999999 999999999999999999999777654443 22345778888998 99998888
Q ss_pred HHHHHHHH
Q 022768 246 CTEAGMSA 253 (292)
Q Consensus 246 ~~~a~~~a 253 (292)
++++..+|
T Consensus 222 l~rvrD~a 229 (233)
T PF05496_consen 222 LRRVRDFA 229 (233)
T ss_dssp HHHHCCCC
T ss_pred HHHHHHHH
Confidence 88765443
No 39
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6e-23 Score=186.32 Aligned_cols=247 Identities=21% Similarity=0.246 Sum_probs=191.8
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEeccchhcccc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSAIIDKYI 107 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~~~~~~~~ 107 (292)
.+++-...++++..+....| +...++++|.||+|+|||.|++++++++. +++..++|..+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56666777777776665555 45578899999999999999999999884 4677788988887777
Q ss_pred ChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CC-CCCCCeEEEEEeCCCCCCC
Q 022768 108 GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-DQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~vi~t~~~~~~l~ 185 (292)
...++.+..+|..+.++.|+|++||++|.+++....+.+ .+......+..+++++. .+ ..+..+.+|+|.+..+.++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~-q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENG-QDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCC-cchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 788999999999999999999999999999983332222 22223333333332221 11 3334578999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----cCCc
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA----ERDY 260 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~----~~~~ 260 (292)
+.+.++.+|+.++.++.|+..+|.+|++..++..... ..-|++.++..++||...|+..++++|...|+.. ..+.
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999998865422 2234566999999999999999999999999842 2237
Q ss_pred ccHHHHHHHHHHHhhhhhhch------hhhhhhhcC
Q 022768 261 VIHEDFMKAVRKLNEAKKLES------SAHYNADFG 290 (292)
Q Consensus 261 i~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ 290 (292)
+|.+++.++++.+.+...++. ...|+++.|
T Consensus 636 ltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg 671 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGG 671 (952)
T ss_pred chHHHHHHHHHhcChHHhhhccccccCCCCceeccc
Confidence 899999999999998655433 456777776
No 40
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.2e-22 Score=164.54 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=180.5
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
......+|..|++.+|++++++.|.-++...... -..-.|+||+||||.||||+|..+|++++..+...+..
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp 86 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP 86 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc
Confidence 4566778999999999999999999998765332 24466899999999999999999999999888766655
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-------CC------C
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-------GF------D 167 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~------~ 167 (292)
.+-. ...+-.++... ...+||||||+|++ .....+.|...++... +. -
T Consensus 87 ~leK------~gDlaaiLt~L--e~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 87 ALEK------PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred cccC------hhhHHHHHhcC--CcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEec
Confidence 4422 11222333332 23479999999999 7777788877776431 11 1
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
+.+++.+|++|.....+...+++ ||+...++..++.++..+|+.+........ .+-....++.++.| +|+-...++
T Consensus 148 dLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLL 224 (332)
T COG2255 148 DLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLL 224 (332)
T ss_pred cCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHH
Confidence 22378999999999999999999 999999999999999999999888655444 33346778999998 999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
++....|.-++...|+.+...+|+..+...
T Consensus 225 rRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd 254 (332)
T COG2255 225 RRVRDFAQVKGDGDIDRDIADKALKMLDVD 254 (332)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHhCcc
Confidence 999999999999999999999999998864
No 41
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-22 Score=184.75 Aligned_cols=223 Identities=22% Similarity=0.354 Sum_probs=186.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~ 143 (292)
.-...+|++|+||+|||++++++|.+++.++++++|.++.......++..+..+|..++.+.|+||||-++|.+.....
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d- 507 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD- 507 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC-
Confidence 3455799999999999999999999999999999999999999889999999999999999999999999999963221
Q ss_pred CCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCC
Q 022768 144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG 223 (292)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~ 223 (292)
.+.+......+..++..-....+..++++|++++..+.+++.+++ .|-.++.++.|+.++|.+++++++.....+.
T Consensus 508 --gged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~ 583 (953)
T KOG0736|consen 508 --GGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQ 583 (953)
T ss_pred --CchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccch
Confidence 134445555555555422233566789999999999999999998 7878999999999999999999999888888
Q ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---cC-----------------CcccHHHHHHHHHHHhhhhhhch--
Q 022768 224 EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA---ER-----------------DYVIHEDFMKAVRKLNEAKKLES-- 281 (292)
Q Consensus 224 ~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~---~~-----------------~~i~~~~~~~a~~~~~~~~~~~~-- 281 (292)
++....++..+.||+.+++.+++..+-..+..+ .. ..++.+|+.+|+.+++..++...
T Consensus 584 ~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGA 663 (953)
T KOG0736|consen 584 DVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGA 663 (953)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCC
Confidence 899999999999999999999988773333222 11 47899999999999998766443
Q ss_pred ----hhhhhhhcCC
Q 022768 282 ----SAHYNADFGK 291 (292)
Q Consensus 282 ----~~~~~~~~~~ 291 (292)
++.|+|++|-
T Consensus 664 PKIPnV~WdDVGGL 677 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGL 677 (953)
T ss_pred CCCCccchhcccCH
Confidence 7799999984
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.2e-22 Score=169.79 Aligned_cols=221 Identities=29% Similarity=0.416 Sum_probs=163.0
Q ss_pred hcccCCCCCccccccccHHHH---HHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQI---RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+++...+|.++++++|+++-. .-|.+.+.. ..-.+++||||||+||||+++.++...+..|..+
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 666778899999999999865 445555443 3455799999999999999999999999999999
Q ss_pred eccchhccccChHHHHHHHHHHHhhhC----CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
+... ...+.++.++..++.. ..-||||||+|++ +...|..|+-.++. +.++
T Consensus 80 sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE~-------G~ii 134 (436)
T COG2256 80 SAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVEN-------GTII 134 (436)
T ss_pred cccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------ChhhhhhhhhhhcC-------CeEE
Confidence 8765 3455667777777432 2469999999999 78888888887764 5678
Q ss_pred EEEEe--CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc--CC---CCCCH---HHHHHHcCCCCHHHHH
Q 022768 174 MIMAT--NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA--KH---GEIDY---EAVVKLAEGFNGADLR 243 (292)
Q Consensus 174 vi~t~--~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~--~~---~~~~~---~~l~~~~~g~~~~di~ 243 (292)
+|++| |+.-.++++++| |+ .++.|.+.+.++..+++++.+.... .. ..++- +.++..++| |.+
T Consensus 135 lIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R 207 (436)
T COG2256 135 LIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DAR 207 (436)
T ss_pred EEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHH
Confidence 88865 555689999999 66 6789999999999999988443221 11 11333 334444444 888
Q ss_pred HHHHHHHHHHHHhcCC-cccHHHHHHHHHHHhhhhhhchhhhhh
Q 022768 244 NVCTEAGMSAIRAERD-YVIHEDFMKAVRKLNEAKKLESSAHYN 286 (292)
Q Consensus 244 ~l~~~a~~~a~~~~~~-~i~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (292)
.+++..-..+...... .++.+++.+.+++-....+++...+|+
T Consensus 208 ~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYd 251 (436)
T COG2256 208 RALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYD 251 (436)
T ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHH
Confidence 7777766666554332 345899999999888877777666665
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.89 E-value=2.7e-21 Score=170.09 Aligned_cols=224 Identities=20% Similarity=0.188 Sum_probs=165.8
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
...++|.+|++++|+++.++.+..++...... -.+..+++|+||||+|||++++.+|++++..+...+....
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 56778889999999999999999887642111 2345689999999999999999999999988776654432
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC-------C------CCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-------F------DQL 169 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~------~~~ 169 (292)
.. ...+..++... ..+++|+|||+|.+ ....++.+...++.... . ...
T Consensus 88 ~~------~~~l~~~l~~l--~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 EK------PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred cC------hHHHHHHHHhc--ccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 11 11222333322 34579999999998 44445555555543210 0 012
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 170 ~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
+++.+|++++....+++++++ ||+..+.|++|+.+++.++++......... .+-....++..+.| +++.+..+++.
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 357889999999999999988 998899999999999999999887754433 22235677778887 77899999999
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 249 AGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 249 a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
+..+|.......|+.+++.+++..+...
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 9988887766789999999999876543
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=2.1e-21 Score=180.52 Aligned_cols=196 Identities=16% Similarity=0.234 Sum_probs=146.0
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+..+++|.+|++|+|++++++.|.+++..- ...+.+||+||+|+||||+++.+++.+++.
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~ 70 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS 70 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC
Confidence 567788999999999999999999999998652 335568999999999999999999998753
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+++++... ....+.++.++..+.. ....|+||||+|.| +.
T Consensus 71 ~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~ 133 (830)
T PRK07003 71 QPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TN 133 (830)
T ss_pred CCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CH
Confidence 12222111 1122334444444332 34579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....|+..|++ ...++.+|++||.++.+.+.+++ || ..+.|+.++.++..+.++..+....+. .+..+..
T Consensus 134 ~A~NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~l 205 (830)
T PRK07003 134 HAFNAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRL 205 (830)
T ss_pred HHHHHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 566666666554 33588899999999999999999 88 889999999999999999887644332 2233566
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMS 252 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~ 252 (292)
+++.++| +.++..+++..+..+
T Consensus 206 IA~~A~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 206 LARAAQG-SMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 7778887 788888888877744
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-22 Score=166.57 Aligned_cols=242 Identities=24% Similarity=0.331 Sum_probs=181.6
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEecc
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSS 100 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~ 100 (292)
|+.|+=-...|+++..|+...+.-.+...+-. +..++-+|++||||||||+|||++|+.+ ....+++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55566667789999998765432211111111 2346679999999999999999999988 3457999999
Q ss_pred chhccccChHHHHHHHHHHHhhhC-----CCEEEEEcccccccCCcCC-CCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 101 AIIDKYIGESARLIREMFGYARDH-----QPCIIFMDEIDAIGGRRFS-EGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~il~lDe~d~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
.+.+++.++..+.+..+|+.+..- .--.++|||++.++..+.+ .+.....+..+....++.+++.+...+++.+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999887541 1246689999999877744 4445677888899999999998888899999
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc-----CCCC-------------CCHHHHHHH-cC
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA-----KHGE-------------IDYEAVVKL-AE 235 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~-----~~~~-------------~~~~~l~~~-~~ 235 (292)
++|+|..+.++.++.+ |-+.+.++.+|+...+.+|++.+..... .... .....+... +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999997775321 1100 112233333 47
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
|.|+|-++++=--|. |..-...+|+.+++..|+.....+
T Consensus 379 gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred CCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHH
Confidence 999999998766554 333334579999998888776554
No 46
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-21 Score=170.70 Aligned_cols=209 Identities=22% Similarity=0.324 Sum_probs=164.2
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
.|.+|+.|+=..+.+++|.+-++.+..++.-|.+.|....++.|||||||||||+++.++|+.++..++.+...+....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999888776432
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCC---cch-HHHHHHHHHHHHHhhCCCCCC--CeEEEEEeCC
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT---SAD-REIQRTLMELLNQLDGFDQLG--KVKMIMATNR 180 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~---~~~-~~~~~~l~~~l~~~~~~~~~~--~~~vi~t~~~ 180 (292)
.. ++.++...... +||+|+|||+-+.-+..... ... ....-+|.-+|+.+++++... .-++|+|||.
T Consensus 275 ----~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ----SD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ----HH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 55655544443 79999999998643322211 111 123345667888888777666 6789999999
Q ss_pred CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCC--CCHHHHHHH
Q 022768 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG--FNGADLRNV 245 (292)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~di~~l 245 (292)
.+.++|+|.+++|++..|++++-+......++..|+..-. ...-++.+.....+ .||+++...
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999999999999999996432 12234445544443 488877643
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=8.3e-21 Score=162.88 Aligned_cols=212 Identities=22% Similarity=0.312 Sum_probs=147.8
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEeccc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVSSA 101 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~G~GKT~l~~~la~~l-------~~~~~~~~~~~ 101 (292)
.+++|++++|+++.+.+... .-.....+.|+. ++.+++|+||||||||++|+++++.+ ..+++.++...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 37999999999999987663 233455556653 35569999999999999999999875 23588888888
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+.+.+.|.+......++..+ .++||||||+|.+....+ ..+...+.+..|..+++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 88777777766666666654 347999999999864321 122234555555555542 22467777776532
Q ss_pred C-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHH----c--CCC-CHHHHHHHHHH
Q 022768 182 D-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKL----A--EGF-NGADLRNVCTE 248 (292)
Q Consensus 182 ~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~----~--~g~-~~~di~~l~~~ 248 (292)
. ..++.+++ ||...+.|++|+.+++.+|+..++...... .+-....+... . ..+ +.++++.+++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 1 34688998 999999999999999999999998754322 11122222322 1 223 58999999998
Q ss_pred HHHHHHHh
Q 022768 249 AGMSAIRA 256 (292)
Q Consensus 249 a~~~a~~~ 256 (292)
|......+
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 88766555
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=5.9e-21 Score=162.59 Aligned_cols=213 Identities=22% Similarity=0.257 Sum_probs=146.3
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEec
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVS 99 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~G~GKT~l~~~la~~l-------~~~~~~~~~ 99 (292)
.+++++|++++|++|.+++.++... ......|.. ...+++|+||||||||++|+.+++.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4678999999999999998775333 222334443 34579999999999999999999865 236788888
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
..+.+.+.++....+..+|..+. ++||||||+|.+.... ........+..++..++.. ...+++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 88888888888888888887654 4799999999985211 0111223344455554432 24566666654
Q ss_pred CCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHH-------c--CCCCHHHHHH
Q 022768 180 RPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKL-------A--EGFNGADLRN 244 (292)
Q Consensus 180 ~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~-------~--~g~~~~di~~ 244 (292)
..+ .+++++++ ||...+.|+.++.+++.+|++.++...... .+.....+... . ...+.+.+++
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 322 36788988 998899999999999999999988754322 11112233221 1 1237788888
Q ss_pred HHHHHHHHHHHh
Q 022768 245 VCTEAGMSAIRA 256 (292)
Q Consensus 245 l~~~a~~~a~~~ 256 (292)
+++.|......+
T Consensus 230 ~~e~a~~~~~~r 241 (261)
T TIGR02881 230 IIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHH
Confidence 888888766555
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=5.3e-21 Score=171.63 Aligned_cols=210 Identities=15% Similarity=0.190 Sum_probs=151.6
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
+..+...++|.+|++++|++++++.|...+... ..++.+||+||+|+||||+|+.+|+.+++.
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~ 72 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN 72 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc
Confidence 355677899999999999999999999988652 335568999999999999999999998763
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+++++... ......++.+...+. .....|+||||+|.+ ..
T Consensus 73 ~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~ 135 (484)
T PRK14956 73 EPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TD 135 (484)
T ss_pred cccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CH
Confidence 12222111 011233444443332 234579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
..+..|+..++ .+..++++|++|+.++.+.+.+++ || ..+.|.+++.++..+.++..+....+. .+..+..
T Consensus 136 ~A~NALLKtLE-----EPp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~ 207 (484)
T PRK14956 136 QSFNALLKTLE-----EPPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFW 207 (484)
T ss_pred HHHHHHHHHhh-----cCCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 66666665554 344688899999999999999999 88 778999999998888888887644332 2334567
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
++..++| +.|+...+++.+...+ ...|+.+++.+.+
T Consensus 208 Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 208 IAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 7788887 7888888887766432 2347777776544
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=6.1e-21 Score=163.84 Aligned_cols=211 Identities=22% Similarity=0.308 Sum_probs=149.8
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHhcC-------CcEEEEeccch
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNID-------ANFLKVVSSAI 102 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~G~GKT~l~~~la~~l~-------~~~~~~~~~~~ 102 (292)
+++|++++|+++.+.+.. ......+.+.|+. ++.+++|+||||||||++|+++++.+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999998877 4455566677765 355899999999999999999988762 36888888888
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC-
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP- 181 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~- 181 (292)
...+.|.+...+..++..+ .+++|||||++.+..... ......+.+..|..+++. ...++++|++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 7777777766666666654 348999999998853321 112234455555555542 22567777776542
Q ss_pred -C---CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHc------C-CCCHHHHHHHHHHH
Q 022768 182 -D---VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLA------E-GFNGADLRNVCTEA 249 (292)
Q Consensus 182 -~---~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~------~-g~~~~di~~l~~~a 249 (292)
+ .+++.+++ ||...++|++++.+++..|++.++...... .+.....+.... . --|.+.++++++.+
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 35789998 999999999999999999999998864322 111123333321 1 12789999999998
Q ss_pred HHHHHHh
Q 022768 250 GMSAIRA 256 (292)
Q Consensus 250 ~~~a~~~ 256 (292)
......+
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 8776655
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.87 E-value=1e-20 Score=165.12 Aligned_cols=215 Identities=20% Similarity=0.233 Sum_probs=155.2
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccCh
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGE 109 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~ 109 (292)
+|++++|+++.++.|..++...... .....+++|+||||+|||++++.+|++++.++.......... .+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~ 71 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGD 71 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chh
Confidence 6899999999999999988642111 133567999999999999999999999988776555332211 111
Q ss_pred HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-------------CCCCCeEEEE
Q 022768 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-------------DQLGKVKMIM 176 (292)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~vi~ 176 (292)
+...+... ..+.+|+|||+|.+ ....++.+..+++..... ...+.+.+|+
T Consensus 72 ----l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 72 ----LAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred ----HHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 21222222 24579999999998 455556666665432200 1223578899
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
+++.+..+++++++ ||...+.+.+|+.++..++++..+...... .+...+.++..+.| .++.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHH
Confidence 99998899999998 998889999999999999999887643332 12234567777777 667888889888877766
Q ss_pred hcCCcccHHHHHHHHHHHh
Q 022768 256 AERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 256 ~~~~~i~~~~~~~a~~~~~ 274 (292)
.....|+.+++.+++..+.
T Consensus 212 ~~~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 212 RGQKIINRDIALKALEMLM 230 (305)
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 6667799999999998853
No 52
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.8e-21 Score=177.55 Aligned_cols=201 Identities=17% Similarity=0.236 Sum_probs=144.2
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|+.+..+++|.+|++|+|++++++.|.+.+..- ...+.+||+||+|+||||+++.+++.+++.
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~ 70 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE 70 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 567788999999999999999999999998752 335668999999999999999999999762
Q ss_pred -------EEEEeccch------hccc-----cChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 -------FLKVVSSAI------IDKY-----IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 -------~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
+..+..+.. .+.+ .....+.++++..... .....|+||||+|.| +..
T Consensus 71 ~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~ 139 (700)
T PRK12323 71 GGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNH 139 (700)
T ss_pred ccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHH
Confidence 111111100 0000 0112333444444433 234579999999999 555
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC-CCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~-~~~~~l 230 (292)
....|+..|+ .+..++.+|++|+.++.+.+.++| || ..+.|+.++.++..+.++..+....+..+ ..+..+
T Consensus 140 AaNALLKTLE-----EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 140 AFNAMLKTLE-----EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred HHHHHHHhhc-----cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555544 244678899999999999999999 87 88899999999999988887764333321 224667
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGM 251 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~ 251 (292)
+..++| ++++..++++.+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 778887 88899999887664
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=1.7e-20 Score=172.87 Aligned_cols=211 Identities=17% Similarity=0.227 Sum_probs=153.2
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~ 69 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS 69 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC
Confidence 456778899999999999999999999998752 445678999999999999999999998762
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
++.++.... .....++.+...+. ..+..|++|||+|.| +.
T Consensus 70 ~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~ 132 (702)
T PRK14960 70 TPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------ST 132 (702)
T ss_pred CCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CH
Confidence 222222211 12333444444432 234579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....|...++. +.+.+.+|++|+.+..+...+++ || ..+.|.+++.++..+.++..+....+. .+..+..
T Consensus 133 ~A~NALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~ 204 (702)
T PRK14960 133 HSFNALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQ 204 (702)
T ss_pred HHHHHHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 666666666553 33567788888888888888887 77 789999999999999998888654433 2233566
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++..+.| +.|++..++..+..+ +...|+.+++.+.+.
T Consensus 205 IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 205 IAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 7777776 888888888776643 345677777766544
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=2.4e-20 Score=165.82 Aligned_cols=211 Identities=17% Similarity=0.253 Sum_probs=150.1
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
+..+...++|.+|++++|+++.++.+...+... ..++.++|+||+|+||||+|+.+++.+.+..
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~ 70 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS 70 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 567788999999999999999999999988652 3356689999999999999999999986421
Q ss_pred --------------------EEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 95 --------------------LKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 95 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+.++... ......++.+...+.. ....|++|||+|.+ ..
T Consensus 71 ~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~ 133 (363)
T PRK14961 71 NPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SR 133 (363)
T ss_pred CCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CH
Confidence 1111110 0122334444444322 23469999999998 55
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
..+..+...++. +.+.+.+|++++.++.+.+.+++ |+ ..+.|++++.++..++++..+...... .+..+..
T Consensus 134 ~a~naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ 205 (363)
T PRK14961 134 HSFNALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKL 205 (363)
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 555555555443 33567778888888889999998 77 788999999999999998877654322 2223455
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++..+.| +++++..+++.+..+ +...|+.+++.+++.
T Consensus 206 ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 206 IAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 6777776 777888888776543 355788888887665
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=2.6e-20 Score=173.57 Aligned_cols=211 Identities=18% Similarity=0.269 Sum_probs=152.7
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
|..++..++|.+|++++|++.+++.|.+.+..- .-++.+||+||+|+||||+++.+|+.+++..
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA 70 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC
Confidence 567788999999999999999999999988652 3345589999999999999999999987631
Q ss_pred --------------------EEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchH
Q 022768 95 --------------------LKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 95 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
++++... ......++.+...+. .....|++|||+|.| ..
T Consensus 71 ~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~ 133 (647)
T PRK07994 71 TPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SR 133 (647)
T ss_pred CCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CH
Confidence 2222111 011233444443332 234579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
..+..|+..+++ +.+.+.+|++|+.++.+.+.+++ || ..+.|++++.++....++..+....+. .+..+..
T Consensus 134 ~a~NALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~ 205 (647)
T PRK07994 134 HSFNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQL 205 (647)
T ss_pred HHHHHHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 667777776663 44678888888899999999999 87 889999999999999998877543332 2233556
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++..+.| +.|++..+++.+... +...|+.+++.+.+.
T Consensus 206 Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 206 LARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 7778887 888999988776533 223466666655543
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.4e-20 Score=172.85 Aligned_cols=214 Identities=15% Similarity=0.191 Sum_probs=153.9
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+...++|.+|++++|++++++.|...+..- ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA 70 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 556778999999999999999999999998652 345668999999999999999999998653
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+++++... ......++.+...+.. ....|++|||+|.+ ..
T Consensus 71 ~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~ 133 (509)
T PRK14958 71 NPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SG 133 (509)
T ss_pred ccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CH
Confidence 23333221 1122334444444332 34579999999999 55
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....|+..++. +.+.+.+|++|++++.+.+.+++ |+ ..+.|++++.++....++..+....+. .+..+..
T Consensus 134 ~a~naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 134 HSFNALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred HHHHHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 556666665553 34578888888888899888998 77 778899999998888888777654433 2233566
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
++..+.| +.+++.++++.+..+ +...|+.+++.+.+....
T Consensus 206 ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGTIE 245 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCCC
Confidence 7777776 888888888877543 244677777776654433
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=8.9e-21 Score=144.74 Aligned_cols=131 Identities=42% Similarity=0.753 Sum_probs=107.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCC-CEEEEEcccccccCCcCCCCCc
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTS 147 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~lDe~d~l~~~~~~~~~~ 147 (292)
+||+||||+|||++++.+|+.++.+++.+++..+.+.+.+.....+..++..+.... |+||+|||+|.+..+.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998888899999999999998887 9999999999998776333333
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccC
Q 022768 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202 (292)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~ 202 (292)
........+...++... ....++++|+|+|.++.+++.+.+ +||...+.++.
T Consensus 81 ~~~~~~~~L~~~l~~~~--~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPS--SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTT--TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccc--cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 44444555555554433 223579999999999999999996 69999998863
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=4.1e-20 Score=174.97 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=143.8
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
|..+...++|.+|++++|++++++.|.+++..- .-++.+||+||+|+|||++++.+|+.+++..
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~ 70 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA 70 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC
Confidence 567788999999999999999999999987652 3355679999999999999999999997641
Q ss_pred ---EEEecc-chhcc-------cc---ChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 95 ---LKVVSS-AIIDK-------YI---GESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 95 ---~~~~~~-~~~~~-------~~---~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
..++.+ .+... .. ......++.+...+. .....|+||||+|.| ....+..|
T Consensus 71 ~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNAL 139 (944)
T PRK14949 71 TPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNAL 139 (944)
T ss_pred CCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHH
Confidence 111100 00000 00 011223444443332 234579999999999 77777777
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (292)
+..++. +...+.+|++|+.+..+.+.+++ || ..+.|++++.++....++..+....+. .+-.+..++..+.
T Consensus 140 LKtLEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 140 LKTLEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 766653 44577888888889999999999 77 889999999999999998887643322 2223566777888
Q ss_pred CCCHHHHHHHHHHHH
Q 022768 236 GFNGADLRNVCTEAG 250 (292)
Q Consensus 236 g~~~~di~~l~~~a~ 250 (292)
| ++|++..++..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 8889998888766
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=5e-20 Score=167.65 Aligned_cols=211 Identities=18% Similarity=0.236 Sum_probs=144.8
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------- 92 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-------- 92 (292)
.+...++|.+|++++|++++++.|...+... ..++.+||+||||+||||+|+.+|+.+++
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p 70 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP 70 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC
Confidence 4567889999999999999999999887653 34566899999999999999999999865
Q ss_pred ----------------cEEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHH
Q 022768 93 ----------------NFLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (292)
Q Consensus 93 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~ 152 (292)
.++.++... ......++.+...+.. ....+|+|||+|.+ ....
T Consensus 71 c~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a 133 (472)
T PRK14962 71 CNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEA 133 (472)
T ss_pred CcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHH
Confidence 233333221 1112233444433332 34579999999998 5555
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHH
Q 022768 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVV 231 (292)
Q Consensus 153 ~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~ 231 (292)
+..|...+.. +.+.+++|++++.+..+++++++ |+ ..+.|.+++.++...+++..+...... .+..++.++
T Consensus 134 ~~~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia 205 (472)
T PRK14962 134 FNALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIA 205 (472)
T ss_pred HHHHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555542 33567788888888889999998 77 689999999999999988877643322 222345566
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 022768 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 232 ~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 273 (292)
..+.| ..+++.+.++.+..+ .+ ..|+.+++.+++...
T Consensus 206 ~~s~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~~~ 242 (472)
T PRK14962 206 KRASG-GLRDALTMLEQVWKF---SE-GKITLETVHEALGLI 242 (472)
T ss_pred HHhCC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHcCC
Confidence 66665 555555555544332 22 348888888877544
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=9.4e-20 Score=166.49 Aligned_cols=223 Identities=16% Similarity=0.206 Sum_probs=156.1
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE---
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--- 95 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~--- 95 (292)
|.++...++|.+|++++|+++.++.|...+..- ..++++||+||+|+||||+|+.+|+.+++...
T Consensus 8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~ 75 (507)
T PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE 75 (507)
T ss_pred ccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 677888999999999999999999998877542 44678999999999999999999999865321
Q ss_pred -----EEecc----chhc----------cccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHH
Q 022768 96 -----KVVSS----AIID----------KYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (292)
Q Consensus 96 -----~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~ 152 (292)
.+..+ .+.. .........++.++..+.. ....|++|||+|.+ ....
T Consensus 76 ~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a 144 (507)
T PRK06645 76 NTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGA 144 (507)
T ss_pred CcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHH
Confidence 00000 0000 0001123445555555532 34579999999998 5555
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHH
Q 022768 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVV 231 (292)
Q Consensus 153 ~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~ 231 (292)
...|...++ .+.+.+.+|++++..+.+.+.+++ |+ ..+.|.+++.++...+++..+...... .+..+..++
T Consensus 145 ~naLLk~LE-----epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 145 FNALLKTLE-----EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHh-----hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 555555544 244577888888888889999998 77 778999999999999999888754433 222356677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 232 ~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
..+.| +.+++.++++.+..++... ...||.+++.+.+....
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLGLVD 257 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCCC
Confidence 77877 8888888888887654321 23577777766654433
No 61
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-19 Score=155.40 Aligned_cols=238 Identities=24% Similarity=0.386 Sum_probs=172.7
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
+.-.|++++-...-..+|......- .+.+.. -.+=++++||||||||||.+++.+|...|..+-.+...++--.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aT-aNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIAT-ANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHh-cccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 3445788888888888887765542 221111 2345689999999999999999999999998877776665321
Q ss_pred cChHHHHHHHHHHHhhhCC-CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 107 IGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
-.+....+..+|+-++... .-+|||||+|.++-.++.. -.+.....+|..+|-... .....++++.++|.|..++
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 1234566788998887754 4577999999998665332 122333344545443322 2335799999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC----C-------------------CCC----HHHHHHHcCCCC
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----G-------------------EID----YEAVVKLAEGFN 238 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~----~-------------------~~~----~~~l~~~~~g~~ 238 (292)
.++-+ |++..++|+.|..++|..++..|+..+... . ..+ ....+..++|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 999999999999999999999888643211 0 011 355677899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 239 GADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
+++|.+++..-...++.+....++...+++.+......
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~e 615 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQE 615 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999998988888877777777776665543
No 62
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=1.3e-19 Score=168.38 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=154.9
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
|+.+..+++|.+|++|+|++++++.|...+... ..++.+||+||+|+|||++++.+++.+++.-
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~ 70 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG 70 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 566778999999999999999999999998752 4456799999999999999999999886531
Q ss_pred ---EEEec------cchhc-----cccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 95 ---LKVVS------SAIID-----KYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 95 ---~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
..+.. ..+.+ .........++.++..+. .....|+||||+|.+ +......|
T Consensus 71 ~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NAL 139 (709)
T PRK08691 71 EPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAM 139 (709)
T ss_pred CCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHH
Confidence 11100 00000 000112334555554432 234579999999988 55555555
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (292)
+..++. +.+.+.+|++++.+..+...+++ || ..+.|+.++.++....++..+....+. .+..+..|+..+.
T Consensus 140 LKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 140 LKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 555553 33577888888999999999988 77 778899999999999999888754433 2223567777777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
| +.+++..+++.+..+ +...|+.+++.+.+....
T Consensus 212 G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG~~d 245 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL----GSGKVAENDVRQMIGAVD 245 (709)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcccC
Confidence 6 888998888887754 234577777776655443
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.4e-19 Score=164.12 Aligned_cols=209 Identities=18% Similarity=0.236 Sum_probs=152.0
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------- 92 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-------- 92 (292)
.++..++|.+|++++|++..++.|...+..- ..++++||+||+|+||||+|+.+|+.+++
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~p 69 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDP 69 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCC
Confidence 4567899999999999999999999887652 44678999999999999999999997743
Q ss_pred ----------------cEEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHH
Q 022768 93 ----------------NFLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (292)
Q Consensus 93 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~ 152 (292)
.+++++.... ...+.++.+...+.. ....|++|||+|.+ ....
T Consensus 70 Cg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A 132 (491)
T PRK14964 70 CGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSA 132 (491)
T ss_pred ccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHH
Confidence 2344433221 123345555554432 34579999999998 5555
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHH
Q 022768 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVV 231 (292)
Q Consensus 153 ~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~ 231 (292)
...|...++ .+.+.+.+|++++....+.+.+++ |+ ..+.|.+++.++....++..+...... .+..+..++
T Consensus 133 ~NaLLK~LE-----ePp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa 204 (491)
T PRK14964 133 FNALLKTLE-----EPAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA 204 (491)
T ss_pred HHHHHHHHh-----CCCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 555555554 344578888888888889999998 77 778999999999999988887654433 223356677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 232 ~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
..++| +.+++.++++.+..++ ...||.+++.+.+.
T Consensus 205 ~~s~G-slR~alslLdqli~y~----~~~It~e~V~~llg 239 (491)
T PRK14964 205 ENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLLG 239 (491)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 77776 8888888888876543 23688888777643
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.84 E-value=2.3e-19 Score=162.38 Aligned_cols=207 Identities=30% Similarity=0.400 Sum_probs=146.1
Q ss_pred cccCCCCCccccccccHHHHHH---HHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRE---LRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+.+.++|.+|++++|+++.+.. |.+.+.. ....+++|+||||+||||+++.+++.++.+++.++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4567889999999999999766 7777654 23457999999999999999999999999999888
Q ss_pred ccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 99 SSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
..... ...++.++..+. .....+|+|||+|.+ ....+..|...++. +.+++
T Consensus 69 a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le~-------~~iil 123 (413)
T PRK13342 69 AVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVED-------GTITL 123 (413)
T ss_pred ccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhhc-------CcEEE
Confidence 65421 222333333332 235689999999998 56666666665542 45666
Q ss_pred EEEe--CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCC-CCC---HHHHHHHcCCCCHHHHHHHHHH
Q 022768 175 IMAT--NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG-EID---YEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 175 i~t~--~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~-~~~---~~~l~~~~~g~~~~di~~l~~~ 248 (292)
|+++ |....+++++++ || ..+.|++++.++...+++..+....... .++ ++.++..+.| .++.+.++++.
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~ 199 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLEL 199 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6654 334578899998 77 7789999999999999988765321111 233 3455666654 55666666665
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 249 AGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 249 a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+... ...|+.+++.+++.....
T Consensus 200 ~~~~-----~~~It~~~v~~~~~~~~~ 221 (413)
T PRK13342 200 AALG-----VDSITLELLEEALQKRAA 221 (413)
T ss_pred HHHc-----cCCCCHHHHHHHHhhhhh
Confidence 5433 456999999999887543
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2e-19 Score=167.36 Aligned_cols=211 Identities=15% Similarity=0.223 Sum_probs=150.2
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+..+++|.+|++++|++++++.|.+.+..- .-++.+||+||+|+||||+++.+|+.+++.
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~ 70 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ 70 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 556778999999999999999999999998752 335668999999999999999999998752
Q ss_pred ------------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCC
Q 022768 94 ------------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEG 145 (292)
Q Consensus 94 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~ 145 (292)
++.++... ....+.++.+...+.. ....|++|||+|.|
T Consensus 71 ~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------- 136 (618)
T PRK14951 71 GGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------- 136 (618)
T ss_pred cCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC--------
Confidence 11111111 1122344555544332 23579999999999
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CC
Q 022768 146 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GE 224 (292)
Q Consensus 146 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~ 224 (292)
+......|+..++ .+.+.+.+|++|++++.+...+++ |+ ..+.|+.++.++..+.++..+....+. .+
T Consensus 137 ---s~~a~NaLLKtLE-----EPP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~ 205 (618)
T PRK14951 137 ---TNTAFNAMLKTLE-----EPPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEP 205 (618)
T ss_pred ---CHHHHHHHHHhcc-----cCCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 5555555554444 244577788888888888888998 77 889999999999999988887654443 22
Q ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 225 IDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 225 ~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
..+..|+..+.| +.+++.++++.+..+ +...|+.+++.+.+.
T Consensus 206 ~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 206 QALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 235667777777 888888888766644 234577777666553
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.9e-19 Score=164.20 Aligned_cols=212 Identities=18% Similarity=0.248 Sum_probs=148.7
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA 70 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 556778899999999999999999999988652 334568999999999999999999988651
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
++.++.... .....++.+...+. .....|++|||+|.+ +.
T Consensus 71 ~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~ 133 (546)
T PRK14957 71 EPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SK 133 (546)
T ss_pred CCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cH
Confidence 222221110 11122333333322 234579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
..+..|+..++. +.+.+.+|++|+++..+.+.+++ |+ ..++|.+++.++....++..+....+. .+..+..
T Consensus 134 ~a~naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~ 205 (546)
T PRK14957 134 QSFNALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEY 205 (546)
T ss_pred HHHHHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 666666666653 33567778778888888888988 77 889999999999888888777644332 2233456
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
++..+.| +.+++..+++.+..+. + ..|+.+++.+++..
T Consensus 206 Ia~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 206 IAYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHcc
Confidence 6677776 7778888887766442 1 45777777765443
No 67
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=1.3e-19 Score=167.90 Aligned_cols=226 Identities=25% Similarity=0.350 Sum_probs=159.0
Q ss_pred hhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------
Q 022768 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------ 90 (292)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l------ 90 (292)
....++.+.++|.+|++++|+++.++.+...+.. ..+.+++|+||||||||++|+++.+..
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s 116 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPAS 116 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 3455777888999999999999999999876432 335689999999999999999998642
Q ss_pred ----CCcEEEEeccchh--c-----cccChHHHHH---HHHH----------HHhhhCCCEEEEEcccccccCCcCCCCC
Q 022768 91 ----DANFLKVVSSAII--D-----KYIGESARLI---REMF----------GYARDHQPCIIFMDEIDAIGGRRFSEGT 146 (292)
Q Consensus 91 ----~~~~~~~~~~~~~--~-----~~~~~~~~~~---~~~~----------~~~~~~~~~il~lDe~d~l~~~~~~~~~ 146 (292)
+.+++.+++.... . ...+.....+ ...+ ........++|||||++.+
T Consensus 117 ~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L--------- 187 (531)
T TIGR02902 117 PFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL--------- 187 (531)
T ss_pred CcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC---------
Confidence 3578888876421 1 0011000000 0000 0112234589999999999
Q ss_pred cchHHHHHHHHHHHHHhhCC-----------------------CCCCCeEEE-EEeCCCCCCChhhcCCCCcceEEEccC
Q 022768 147 SADREIQRTLMELLNQLDGF-----------------------DQLGKVKMI-MATNRPDVLDPALLRPGRLDRKIEIPL 202 (292)
Q Consensus 147 ~~~~~~~~~l~~~l~~~~~~-----------------------~~~~~~~vi-~t~~~~~~l~~~l~~~~r~~~~i~l~~ 202 (292)
+...+..|..+++..... .-...+.+| +|++.++.+++++++ || ..+.|++
T Consensus 188 --~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~p 262 (531)
T TIGR02902 188 --HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRP 262 (531)
T ss_pred --CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCC
Confidence 888888888887652100 001134444 556778999999998 77 6789999
Q ss_pred CCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 203 PNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 203 p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++.+++..+++..+...... .+..++.+...+ ++.+++.++++.|...|..+++..|+.+|+..++.
T Consensus 263 L~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 263 LLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 99999999999988754432 111234444443 37899999999999999888888999999999986
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=2e-19 Score=166.32 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=151.3
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
|..+...++|.+|++++|++++++.|...+... ..++.+||+||+|+|||++|+.+++.+.+..
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTA 70 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 566788899999999999999999999988752 3456689999999999999999999986521
Q ss_pred --------------------EEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 95 --------------------LKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 95 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+.++... ......++.+...+.. ....|++|||+|.+ ..
T Consensus 71 ~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~ 133 (527)
T PRK14969 71 TPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SK 133 (527)
T ss_pred CCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CH
Confidence 1111110 1123345555554432 34579999999998 55
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....|+..++. +.+.+.+|++|++++.+...+++ |+ ..+.|+.++.++....+...+....+. .+..+..
T Consensus 134 ~a~naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~ 205 (527)
T PRK14969 134 SAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQL 205 (527)
T ss_pred HHHHHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 555555555543 34577888888888888888888 77 788999999999998888777543333 2223456
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++..+.| +.+++.++++.+..+ +...|+.+++.+.+.
T Consensus 206 la~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 206 LARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 6777776 888888888887654 345678877776654
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=99.83 E-value=5.1e-19 Score=163.03 Aligned_cols=211 Identities=31% Similarity=0.366 Sum_probs=147.6
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
-+.++|.++++++|++++++.|..++.....+ .+..++||+||||+|||++++++|++++.+++.++..+.
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g---------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKG---------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 35789999999999999999999998764211 336789999999999999999999999999999988764
Q ss_pred hccccChHHHHHHHHHHHhhh------CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 103 IDKYIGESARLIREMFGYARD------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~------~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
.. ...+..+...+.. ..+.+|+|||+|.+..+ .+......+..++.. .+..+|+
T Consensus 76 r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~iIl 135 (482)
T PRK04195 76 RT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQPIIL 135 (482)
T ss_pred cc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCCEEE
Confidence 32 1222222222211 24689999999998431 133444555555542 2345777
Q ss_pred EeCCCCCCCh-hhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDP-ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~-~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
++|.+..+.. .+++ ++ ..+.|++|+..+...+++..+...... ++.+.+..+... +++|++.+++....++
T Consensus 136 i~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~-s~GDlR~ain~Lq~~a-- 207 (482)
T PRK04195 136 TANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAER-SGGDLRSAINDLQAIA-- 207 (482)
T ss_pred eccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-cCCCHHHHHHHHHHHh--
Confidence 8888887776 6765 55 789999999999999999888644332 344444444332 3448888888777643
Q ss_pred hcCCcccHHHHHHHH
Q 022768 256 AERDYVIHEDFMKAV 270 (292)
Q Consensus 256 ~~~~~i~~~~~~~a~ 270 (292)
.+...++.+++....
T Consensus 208 ~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 EGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCcHHHHHHhh
Confidence 344567777776554
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=4.5e-19 Score=155.35 Aligned_cols=206 Identities=19% Similarity=0.212 Sum_probs=138.2
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cEEE
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLK 96 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~~~ 96 (292)
..++++|.+|++++|++++++.|..++.. ....+++|+||||+||||+++++|+++.. .++.
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 34688999999999999999999887654 22347999999999999999999998732 3555
Q ss_pred EeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
++.++..+. ......++. +.... ...+.+++|||+|.+ ....+..|...++.. ...+
T Consensus 70 ln~sd~~~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~-----~~~t 130 (319)
T PLN03025 70 LNASDDRGI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY-----SNTT 130 (319)
T ss_pred ecccccccH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----cCCc
Confidence 555432211 111111211 11111 123579999999999 666777777766532 2345
Q ss_pred EEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGM 251 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~ 251 (292)
.+|+++|..+.+.+++++ |+ ..+.|++|+.++....++..+...... .+..++.+...+.| |++.++.....
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~ 203 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQA 203 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 678889988899999998 76 678999999999999988887644332 22234555555554 66666555543
Q ss_pred HHHHhcCCcccHHHHHH
Q 022768 252 SAIRAERDYVIHEDFMK 268 (292)
Q Consensus 252 ~a~~~~~~~i~~~~~~~ 268 (292)
.+. +...|+.+++.+
T Consensus 204 ~~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 204 THS--GFGFVNQENVFK 218 (319)
T ss_pred HHh--cCCCCCHHHHHH
Confidence 222 234566666654
No 71
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=2.8e-19 Score=148.74 Aligned_cols=203 Identities=20% Similarity=0.255 Sum_probs=141.6
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------E
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------F 94 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------~ 94 (292)
.+-+.+.|-+|++++|++++++.|.+.+.. .-..++|||||||||||+.++++|+++.++ +
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 345789999999999999999999999865 235689999999999999999999999662 2
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhh---------hCCC-EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYAR---------DHQP-CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 164 (292)
...+.++..+..+.. .-..-|.... .+.| .|++|||.|.| ..+.+.+|...++.
T Consensus 92 l~lnaSderGisvvr---~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~-- 155 (346)
T KOG0989|consen 92 LELNASDERGISVVR---EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED-- 155 (346)
T ss_pred hhhcccccccccchh---hhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc--
Confidence 333444433332111 1111222221 1333 79999999999 88888888888764
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCC-CCCHHHHHHHcCCCCHHHHH
Q 022768 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG-EIDYEAVVKLAEGFNGADLR 243 (292)
Q Consensus 165 ~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~-~~~~~~l~~~~~g~~~~di~ 243 (292)
....+.+|..||..+.+...+.+ |+ ..+.|+....+...+-++.++....+.- +-.++.++..++| |++
T Consensus 156 ---~s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR 225 (346)
T KOG0989|consen 156 ---FSRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLR 225 (346)
T ss_pred ---cccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHH
Confidence 23578899999999999999999 87 6678888888888888888877554442 2234555666665 666
Q ss_pred HHHHHHHHHHHHhcCCcccHH
Q 022768 244 NVCTEAGMSAIRAERDYVIHE 264 (292)
Q Consensus 244 ~l~~~a~~~a~~~~~~~i~~~ 264 (292)
.++......+. ....|+..
T Consensus 226 ~Ait~Lqsls~--~gk~It~~ 244 (346)
T KOG0989|consen 226 RAITTLQSLSL--LGKRITTS 244 (346)
T ss_pred HHHHHHHHhhc--cCcccchH
Confidence 55555544443 33344433
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.1e-18 Score=160.20 Aligned_cols=206 Identities=18% Similarity=0.255 Sum_probs=143.0
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---------
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--------- 93 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--------- 93 (292)
...++|.+|++++|++++++.|..++... ..++.+||+||||+||||+++++++.+.+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 46789999999999999999999998752 335567999999999999999999988541
Q ss_pred --------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHH
Q 022768 94 --------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 155 (292)
Q Consensus 94 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~ 155 (292)
++.++... ......++.+...+. ...+.+++|||+|.+ ....+..
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~na 135 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNA 135 (504)
T ss_pred ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHH
Confidence 23333221 111233334333322 235679999999987 4444445
Q ss_pred HHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHc
Q 022768 156 LMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLA 234 (292)
Q Consensus 156 l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~ 234 (292)
|...++. +...+++|++++.+..+.+.+++ |+ ..+.|++++.++....++..+...... .+..+..++..+
T Consensus 136 LLk~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 136 LLKTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred HHHHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5444432 33467788888888899999998 77 678999999999999999887654433 222356677777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 235 EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 235 ~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
.| ..+++.++++.+... ...||.+++.+.+.
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 76 666666666665432 33688777766643
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.82 E-value=8.1e-19 Score=168.98 Aligned_cols=230 Identities=25% Similarity=0.333 Sum_probs=168.7
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---------- 90 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---------- 90 (292)
++.....+-++++++|+++.++++...+.. ....+++|+||||+|||++++.+|..+
T Consensus 171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 171 DLTEKAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred hHHHHHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 333455677889999999999998887754 235579999999999999999999987
Q ss_pred CCcEEEEeccchh--ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 91 DANFLKVVSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
+..++.+++..+. ..+.|+.+..++.+++.+....+.||||||+|.+.+.... .+........|...+.
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~------- 308 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS------- 308 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------
Confidence 6678888877776 4677889999999999988777899999999999754321 1122233444444332
Q ss_pred CCCeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-----CCCCHHHHHHHcCCC-
Q 022768 169 LGKVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-----GEIDYEAVVKLAEGF- 237 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-----~~~~~~~l~~~~~g~- 237 (292)
.+.+.+|++|+..+ ..++++.+ ||. .+.++.|+.+++.+|++.....+... .+-.+..++..+..|
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 25788999998632 46889998 994 79999999999999999766532211 122344555556554
Q ss_pred ----CHHHHHHHHHHHHHHHHHhc----CCcccHHHHHHHHHHHhh
Q 022768 238 ----NGADLRNVCTEAGMSAIRAE----RDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 238 ----~~~di~~l~~~a~~~a~~~~----~~~i~~~~~~~a~~~~~~ 275 (292)
-|.-...++++|......+. ...|+.+|+.+++..+..
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 35566788888876554332 346999999999998863
No 74
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.8e-20 Score=166.81 Aligned_cols=168 Identities=27% Similarity=0.401 Sum_probs=130.2
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-------
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------- 104 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~------- 104 (292)
.+.+|++++++++.+|+.-.... +...+..++|+||||+|||++++++|+.++..|+++..+.+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 35689999999999998653111 2234677899999999999999999999999999999887664
Q ss_pred --cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH----------hhCCCCCCCe
Q 022768 105 --KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ----------LDGFDQLGKV 172 (292)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~~~~~~ 172 (292)
.|+|.....+-+....+....| +++|||+|.+...- ..+...+|++.|+- ++.-...+.+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-------rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-------RGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-------CCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 3666666666677777777665 99999999995322 22223444444432 2233455689
Q ss_pred EEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
++|+|+|..+.++.+|++ || .+|.++.++.++..+|.+.++-
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999999 88 8999999999999999998874
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.7e-18 Score=160.17 Aligned_cols=212 Identities=17% Similarity=0.230 Sum_probs=144.6
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
..+...++|.+|++|+|++.+++.|.+++..- .-.+.+||+||+|+|||++|+.+|+.+.+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~ 71 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE 71 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC
Confidence 35567899999999999999999999998652 235689999999999999999999999753
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHh-hhCCCEEEEEcccccccCCcCCCCCcchHHHHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYA-RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (292)
+++++.... ..+. ..+.+...+... ......|++|||+|.| ....+.
T Consensus 72 pCg~C~sC~~i~~g~hpDv~eId~a~~--~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~n 137 (624)
T PRK14959 72 PCNTCEQCRKVTQGMHVDVVEIDGASN--RGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFN 137 (624)
T ss_pred CCcccHHHHHHhcCCCCceEEEecccc--cCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHH
Confidence 222322110 0111 112222222222 2234579999999999 566666
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHH
Q 022768 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKL 233 (292)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~ 233 (292)
.|...++. +.+.+++|++|+.++.+...+++ |+ ..+.|++++.++...+++..+...... ....++.++..
T Consensus 138 aLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 138 ALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66555543 33578888889888888888988 77 678999999999999888877643322 22235566667
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 234 AEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 234 ~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+.| +.+++.++++.+. ..+...|+.+++.+++
T Consensus 210 s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 776 6666666666542 2233467777766554
No 76
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.81 E-value=6.2e-18 Score=151.20 Aligned_cols=226 Identities=23% Similarity=0.303 Sum_probs=151.3
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEe
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---------ANFLKVV 98 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---------~~~~~~~ 98 (292)
.+-.++++|++++++.|..++...+.+ ..+.+++|+||||+|||++++.+++.+. ..+++++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 333457899999999999998753221 3356799999999999999999998763 4677788
Q ss_pred ccchhccc--c----------C--------hHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHH
Q 022768 99 SSAIIDKY--I----------G--------ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 157 (292)
Q Consensus 99 ~~~~~~~~--~----------~--------~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~ 157 (292)
+....+.. . + ........++..... ..+.+|+|||+|.+... .+..+.
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~ 150 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLY 150 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHH
Confidence 76543210 0 0 112223344444332 34678999999999521 112344
Q ss_pred HHHHHhh-CCCCCCCeEEEEEeCCCC---CCChhhcCCCCcc-eEEEccCCCHHHHHHHHHHHHcCccCCCCCCH---HH
Q 022768 158 ELLNQLD-GFDQLGKVKMIMATNRPD---VLDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY---EA 229 (292)
Q Consensus 158 ~~l~~~~-~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~-~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~---~~ 229 (292)
.+++... ...+..++.+|+++|.+. .+++.+.+ ||. ..+.|++++.++..++++.++........++. +.
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 228 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL 228 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence 4443311 112335788899998875 47777777 664 57899999999999999988752111111222 22
Q ss_pred H---HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 230 V---VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 230 l---~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
+ +..+.| ..+.+..++..|...|..++...|+.+++.+|+..+...
T Consensus 229 i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 229 CAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 2 333445 677778899999999988888899999999999888543
No 77
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.7e-19 Score=160.93 Aligned_cols=216 Identities=21% Similarity=0.281 Sum_probs=158.8
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---- 94 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---- 94 (292)
|+.+...++|..|++++|++.++..|...+..- .-.+.++|.||.|+||||++|.+|+.++|.-
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ 70 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTA 70 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC
Confidence 455677899999999999999999999998763 4567899999999999999999999997642
Q ss_pred ---EEEecc-ch-----hc-----cccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 95 ---LKVVSS-AI-----ID-----KYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 95 ---~~~~~~-~~-----~~-----~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
..+..+ .+ .+ .......+.++.+.+.+.. .+..|.+|||+|.| ... ++
T Consensus 71 ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~---af 136 (515)
T COG2812 71 EPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQ---AF 136 (515)
T ss_pred CcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHH---HH
Confidence 111110 01 00 0001133445666665543 45689999999999 444 44
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC-CCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~-~~~~~l~~~~~ 235 (292)
..+|+.++ .++.++.+|++|..+++++..++| || ..+.|+..+.++....+...+.+..+..+ -.+..+++.++
T Consensus 137 NALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 137 NALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred HHHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 45555555 566799999999999999999999 77 77899999999999999999887666533 34567778888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
| +.||...+++.+....- ..|+.+.+.+.+
T Consensus 212 G-s~RDalslLDq~i~~~~----~~It~~~v~~~l 241 (515)
T COG2812 212 G-SLRDALSLLDQAIAFGE----GEITLESVRDML 241 (515)
T ss_pred C-ChhhHHHHHHHHHHccC----CcccHHHHHHHh
Confidence 8 89999999999886642 334444444333
No 78
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=2.9e-18 Score=156.96 Aligned_cols=207 Identities=18% Similarity=0.220 Sum_probs=147.6
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------- 93 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------- 93 (292)
.+...++|.+|++++|++++++.|...+..- .-++.+||+||+|+|||++++.+++.+.+.
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p 70 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP 70 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999999999999999998652 345667999999999999999999988431
Q ss_pred -----------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHH
Q 022768 94 -----------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (292)
Q Consensus 94 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~ 152 (292)
++.++... ....+.++.+...... ....|++|||+|.+ ....
T Consensus 71 C~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A 133 (535)
T PRK08451 71 CDTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEA 133 (535)
T ss_pred CcccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHH
Confidence 22222111 0112344444433221 23479999999999 6667
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHH
Q 022768 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVV 231 (292)
Q Consensus 153 ~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~ 231 (292)
+..|+..++. +.+.+.+|++++.+..+.+.+++ |+ ..++|.+++.++....++..+...... .+..+..++
T Consensus 134 ~NALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 134 FNALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred HHHHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777666654 33567788888888999999999 76 788999999999988888777654333 223456677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 232 ~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
..+.| +.+++..+++.+..++ ...||.+++.+.
T Consensus 206 ~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 206 RSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 77776 8888888888777654 234666655544
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=4.2e-18 Score=157.96 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=143.6
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------EE
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FL 95 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~~ 95 (292)
...++|.+|++++|++++++.|..++..- ..++.+||+||+|+|||++++.+|+.+.+. +-
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 35789999999999999999999998752 345568999999999999999999988652 11
Q ss_pred EEecc-c----------hh--ccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHH
Q 022768 96 KVVSS-A----------II--DKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 158 (292)
Q Consensus 96 ~~~~~-~----------~~--~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ 158 (292)
.+..+ . +. +.......+.++.+...+. .....|++|||+|.+ ....+..|+.
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NALLK 140 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNALLK 140 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHHHHH
Confidence 11000 0 00 0000011233333333332 234579999999999 6666666665
Q ss_pred HHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCC
Q 022768 159 LLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGF 237 (292)
Q Consensus 159 ~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~ 237 (292)
.++. +...+++|++|+.++.+.+.+++ |+ ..+.|..++.++..+.+..++...... .+..+..++..+.|
T Consensus 141 ~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 141 IVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5553 44578888888888999999999 76 789999999999988888877654432 12223445566665
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 238 NGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 238 ~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
+.+++.++++.+..++ +...|+.+++.+.
T Consensus 212 dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 212 SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 7888888888765432 2345666665544
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.81 E-value=5.6e-18 Score=149.84 Aligned_cols=212 Identities=20% Similarity=0.310 Sum_probs=141.7
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CcEEEE
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-----ANFLKV 97 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~-----~~~~~~ 97 (292)
.+.+.|.+|++++|++++++.|..++... ...+++|+||||+|||++++++++++. .+++.+
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 45788999999999999999999987642 223799999999999999999999884 345677
Q ss_pred eccchhcccc-------------Ch-------HHHHHHHHHHHhhh-----CCCEEEEEcccccccCCcCCCCCcchHHH
Q 022768 98 VSSAIIDKYI-------------GE-------SARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (292)
Q Consensus 98 ~~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~-----~~~~il~lDe~d~l~~~~~~~~~~~~~~~ 152 (292)
++.++..... +. ....++.+...... ..+.+|+|||+|.+ ....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~~~ 141 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------REDA 141 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CHHH
Confidence 7665432110 00 11222222222211 23469999999988 5555
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHH
Q 022768 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVV 231 (292)
Q Consensus 153 ~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~ 231 (292)
+..|..+++... ..+.+|++++.+..+.+.+++ |+ ..+.+.+|+.++...+++..+...... .+..+..++
T Consensus 142 ~~~L~~~le~~~-----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~ 213 (337)
T PRK12402 142 QQALRRIMEQYS-----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA 213 (337)
T ss_pred HHHHHHHHHhcc-----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 666666665422 345567777777777788887 66 678999999999999999887654433 222344555
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 232 ~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
..+. ++++.++..+..++. ....||.+++.+++..
T Consensus 214 ~~~~----gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 214 YYAG----GDLRKAILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred HHcC----CCHHHHHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 5554 366666666555442 2236888988887664
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=2.9e-18 Score=159.69 Aligned_cols=209 Identities=19% Similarity=0.261 Sum_probs=148.3
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
..+...++|.+|++++|+++.++.|...+... ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~ 71 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE 71 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 34556789999999999999999999998752 446679999999999999999999988642
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
++.++... ......++.+...+.. ....|++|||+|.| ...
T Consensus 72 pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~ 134 (559)
T PRK05563 72 PCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STG 134 (559)
T ss_pred CCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHH
Confidence 12222111 1223445555555442 34579999999998 454
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l 230 (292)
....|...+ + .+...+++|++|+.++.+.+.+++ |+ ..+.|++|+.++....++..+...... .+..+..+
T Consensus 135 a~naLLKtL---E--epp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~i 206 (559)
T PRK05563 135 AFNALLKTL---E--EPPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLI 206 (559)
T ss_pred HHHHHHHHh---c--CCCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 444454444 4 334577788888888999999998 77 678999999999999988887654433 22235566
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+..+.| +.+++..+++.+..++ ...|+.+++.+++
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 777776 8888888888776542 3457777665543
No 82
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=4.8e-18 Score=163.17 Aligned_cols=212 Identities=19% Similarity=0.172 Sum_probs=144.1
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------E
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------F 94 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~ 94 (292)
+..+++|.+|++|+|++++++.|..++..- ..++.+||+||+|+|||++++.|++.+.|. +
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 557899999999999999999999998652 334568999999999999999999999752 1
Q ss_pred EEEeccc-----------hh--ccccChHHHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHH
Q 022768 95 LKVVSSA-----------II--DKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 157 (292)
Q Consensus 95 ~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~ 157 (292)
-.|..+. +. +.......+.++.+...+ ......|+||||+|.| ....+..|+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~NaLL 141 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNALL 141 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHHHH
Confidence 1111000 00 000001123333333322 2245679999999999 676777777
Q ss_pred HHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCC
Q 022768 158 ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEG 236 (292)
Q Consensus 158 ~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g 236 (292)
.+|+. ....+++|++|+..+.|.+.|++ |+ ..+.|..++.++..++++..+....+. ....+..++..+.|
T Consensus 142 K~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 142 KIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 76664 33578888888888889999998 77 788999999999998888877644433 11224456667776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 022768 237 FNGADLRNVCTEAGMSAIRAERDYVIHEDFMK 268 (292)
Q Consensus 237 ~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~ 268 (292)
+.+++..+++.+...+ +...|+.+++.+
T Consensus 214 -dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 214 -SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred -CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 7778888777765332 233466555443
No 83
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=5.5e-18 Score=157.97 Aligned_cols=222 Identities=19% Similarity=0.194 Sum_probs=156.4
Q ss_pred ChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE
Q 022768 15 DPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (292)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~ 94 (292)
....|..++..++|.+|++|+|++..++.|...+..- ..++.+||+||+|+|||++++.+|+.+.+..
T Consensus 7 ~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 7 AATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3445888999999999999999999999999988652 4466899999999999999999999986542
Q ss_pred EEEe------ccc-------hh-----cc--c---cChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCc
Q 022768 95 LKVV------SSA-------II-----DK--Y---IGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTS 147 (292)
Q Consensus 95 ~~~~------~~~-------~~-----~~--~---~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~ 147 (292)
...+ .+. +. +- . .......++.++..+.. ....|++|||+|.+
T Consensus 75 ~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L---------- 144 (598)
T PRK09111 75 PDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML---------- 144 (598)
T ss_pred ccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC----------
Confidence 2111 000 00 00 0 00123345555555432 34579999999999
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCC
Q 022768 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEID 226 (292)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~ 226 (292)
.......|+..++. +.+.+.+|++++..+.+.+.+++ |+ ..+.|..++.++....++..+...... ....
T Consensus 145 -s~~a~naLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eA 215 (598)
T PRK09111 145 -STAAFNALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA 215 (598)
T ss_pred -CHHHHHHHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555666655553 33567788888888888888988 77 689999999999999888887644332 1223
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 227 YEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 227 ~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
+..++..+.| +.+++.++++.+..+ +...|+.+++.+.+..
T Consensus 216 l~lIa~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg~ 256 (598)
T PRK09111 216 LALIARAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLGL 256 (598)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhCC
Confidence 4556777776 788888888776543 2346888888877653
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.1e-18 Score=160.14 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=149.4
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+...++|.+|++|+|++++++.|...+..- ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~ 70 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA 70 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC
Confidence 455678899999999999999999999998652 345678999999999999999999998653
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
+++++... ....+.++.+...+.. ....|++|||+|.| ..
T Consensus 71 ~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~ 133 (576)
T PRK14965 71 EPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------ST 133 (576)
T ss_pred CCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CH
Confidence 12222111 1122334454444432 34579999999999 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....|...++. +.+.+.+|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+....+. ....+..
T Consensus 134 ~a~naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~ 205 (576)
T PRK14965 134 NAFNALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALAL 205 (576)
T ss_pred HHHHHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 666666666653 44578888888889999999998 77 678999999998888888777654433 2234566
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
++..+.| +.+++..+++.+..+.- ..|+.+++.+.
T Consensus 206 la~~a~G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 6777776 77788888776664432 24777776554
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.80 E-value=2.9e-18 Score=162.90 Aligned_cols=228 Identities=21% Similarity=0.273 Sum_probs=145.0
Q ss_pred hcccCCCCCccccccccHHHHH---HHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIR---ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
++...++|.+|++++|+++.+. .|.+.+.. ....+++|+||||+||||+++.+++.++.+++.+
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 4566788999999999999885 45555543 2345799999999999999999999999888887
Q ss_pred eccchhccccChHHHHHHHHHHHhh-hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
++.... .......+........ .....+|||||+|.+ +...+..|...+.. +.+++|+
T Consensus 84 na~~~~---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE~-------g~IiLI~ 142 (725)
T PRK13341 84 NAVLAG---VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVEN-------GTITLIG 142 (725)
T ss_pred hhhhhh---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhcC-------ceEEEEE
Confidence 764311 1111111222111111 124579999999998 56666666655432 3566666
Q ss_pred EeC--CCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc-----CCCCCC---HHHHHHHcCCCCHHHHHHHH
Q 022768 177 ATN--RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA-----KHGEID---YEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 177 t~~--~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~-----~~~~~~---~~~l~~~~~g~~~~di~~l~ 246 (292)
+++ ....+++++++ |+ ..+.|++++.++...+++..+.... ..-.++ ++.|+..+.| +.+.+..++
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 553 23468889998 65 5689999999999999998876210 111233 3445555544 555555555
Q ss_pred HHHHHHHHHhcC--CcccHHHHHHHHHHHhhhhhhchhhhhh
Q 022768 247 TEAGMSAIRAER--DYVIHEDFMKAVRKLNEAKKLESSAHYN 286 (292)
Q Consensus 247 ~~a~~~a~~~~~--~~i~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (292)
+.+...+..... ..|+.+++.+++.......+.....+|+
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd 260 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFD 260 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHH
Confidence 555432221222 2388888999888765544443334443
No 86
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.9e-19 Score=160.82 Aligned_cols=168 Identities=27% Similarity=0.424 Sum_probs=131.6
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-------
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------- 104 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~------- 104 (292)
++.+|++++++++.+++.-- .-.|-..+..++|+||||+|||++++++|+.++..|++++.+.+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~-------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG-------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHH-------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46799999999999998642 1223455778999999999999999999999999999998776543
Q ss_pred --cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH----------hhCCCCCCCe
Q 022768 105 --KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ----------LDGFDQLGKV 172 (292)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~~~~~~ 172 (292)
.|+|.....+.+.+..+..+.| +++|||+|.++..- ......+|+++++- ++.....+++
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-------qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-------QGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-------CCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 4667777777777778887776 89999999996322 11223344444432 2333444589
Q ss_pred EEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
.+|+|+|..+.++++|++ |+ ..|.++.+..++..+|.+.|+-
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999999 88 8899999999999999998875
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=3.5e-18 Score=157.40 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=145.1
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
..+...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~ 71 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD 71 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 45677899999999999999999999987542 335679999999999999999999988542
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
++.++... ......++.+...+.. ....|++|||+|.+ ...
T Consensus 72 ~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~ 134 (605)
T PRK05896 72 CCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STS 134 (605)
T ss_pred CCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHH
Confidence 11121111 0112234444433322 34579999999998 555
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l 230 (292)
.+..|...++. +.+.+++|++|+.++.+.+.+++ |+ ..+.|++++.++....++..+...... .+..+..+
T Consensus 135 A~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 135 AWNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred HHHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55666666653 34578888888888999999998 77 678999999999998888877643322 22235566
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
+..+.| +.+++..+++.+..+. + ..|+.+++.+.
T Consensus 207 a~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 207 ADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 677776 7777777777754332 2 23777766664
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.80 E-value=4e-18 Score=151.84 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=145.4
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
++++.+.++|.+|++++|++++++.|.+.+... ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~ 68 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDG 68 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 356678899999999999999999999988642 345679999999999999999999987543
Q ss_pred -------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchH
Q 022768 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
++.++... ......++.++..+.. ....+++|||+|.+ ..
T Consensus 69 ~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~ 131 (355)
T TIGR02397 69 EPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SK 131 (355)
T ss_pred CCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CH
Confidence 22222211 1122234455544432 34579999999988 44
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEA 229 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~ 229 (292)
.....+...+ + .+...+.+|++++.+..+.+.+++ |+ ..+.+++|+.++..+++..++...... .+..+..
T Consensus 132 ~~~~~Ll~~l---e--~~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~ 203 (355)
T TIGR02397 132 SAFNALLKTL---E--EPPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALEL 203 (355)
T ss_pred HHHHHHHHHH---h--CCccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4444444444 3 233567788888888888888988 77 678999999999999999887654432 1223445
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 230 VVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 230 l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
++..+.| +++.+.+.++.+..++ ...|+.+++.+++.
T Consensus 204 l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 5666665 6777777776666543 23488888776653
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=8.8e-18 Score=157.64 Aligned_cols=216 Identities=17% Similarity=0.260 Sum_probs=148.4
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE-
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV- 97 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~- 97 (292)
+..+...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+.+.....
T Consensus 5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~ 72 (725)
T PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL 72 (725)
T ss_pred hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC
Confidence 445667899999999999999999999998652 3456789999999999999999999986632100
Q ss_pred --eccc-------hhccc--cC---hHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHH
Q 022768 98 --VSSA-------IIDKY--IG---ESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 159 (292)
Q Consensus 98 --~~~~-------~~~~~--~~---~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~ 159 (292)
.|.. ..+.. .+ .....++.+...+.. ....|++|||+|.+ .......|+..
T Consensus 73 ~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKt 141 (725)
T PRK07133 73 LEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKT 141 (725)
T ss_pred CCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHH
Confidence 0000 00000 00 113334555444432 45579999999998 55555555555
Q ss_pred HHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCC
Q 022768 160 LNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFN 238 (292)
Q Consensus 160 l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~ 238 (292)
++. +++.+++|++|+.++.+.+.+++ || ..+.|.+++.++....++..+....+. ....+..++..+.| +
T Consensus 142 LEE-----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 142 LEE-----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-S 212 (725)
T ss_pred hhc-----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 543 44578888888888999999998 77 689999999999998888876644332 12235667777877 7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 239 GADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
.+++..+++.+..+. ...|+.+++.+++
T Consensus 213 lR~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 213 LRDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 778888887765432 2337777766543
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=6.5e-18 Score=154.55 Aligned_cols=217 Identities=19% Similarity=0.220 Sum_probs=147.1
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
+.++...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++++.+|+.+++.
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~ 70 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEG 70 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCC
Confidence 456778899999999999999999999998652 345668899999999999999999988641
Q ss_pred --EEEE-eccchhc----------cccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 94 --FLKV-VSSAIID----------KYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 94 --~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
+-.+ +|..+.. .........++.+...+.. ..+.|++|||+|.+ .......|
T Consensus 71 ~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naL 139 (486)
T PRK14953 71 EPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNAL 139 (486)
T ss_pred CCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHH
Confidence 1111 0000000 0000112233344333322 34579999999988 45455555
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (292)
...+. .+++.+++|++++.++.+.+.+++ |+ ..+.|++++.++....+..++...... .+..+..++..+.
T Consensus 140 Lk~LE-----epp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 140 LKTLE-----EPPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHh-----cCCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 55544 234567777777778888888888 77 578999999999999999887754433 2223456677777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
| +.+++.++++.+..+ +...+|.+++.+++.
T Consensus 212 G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 212 G-GMRDAASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 6 777888888777643 234588887777553
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.79 E-value=7.9e-18 Score=147.60 Aligned_cols=211 Identities=20% Similarity=0.243 Sum_probs=138.5
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
+..+.++|.+|++++|++++++.+..++... ..+..++++||+|+|||++++++++.++.+++.+++.
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 3446899999999999999999999988641 2345566799999999999999999999889888877
Q ss_pred chhccccChHHHHHHHHHHHhh-hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 101 AIIDKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
. .. .......+........ ...+.+|+|||+|.+. ....+..+..+++.. ..++.+|+++|
T Consensus 78 ~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~n 139 (316)
T PHA02544 78 D--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITAN 139 (316)
T ss_pred c--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEcC
Confidence 6 21 2122222222222111 1346899999999872 233455666655542 24677889999
Q ss_pred CCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-----cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 022768 180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-----AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 180 ~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-----~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~ 254 (292)
.+..+.+.+++ || ..+.++.|+.+++.++++.+.... .....++.+.+...... +.++++.++.....++.
T Consensus 140 ~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~-~~~d~r~~l~~l~~~~~ 215 (316)
T PHA02544 140 NKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKK-NFPDFRRTINELQRYAS 215 (316)
T ss_pred ChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHc
Confidence 99999999998 88 578999999999987766543321 11122343344444332 22366666655554442
Q ss_pred HhcCCcccHHHHHH
Q 022768 255 RAERDYVIHEDFMK 268 (292)
Q Consensus 255 ~~~~~~i~~~~~~~ 268 (292)
...++.+++..
T Consensus 216 ---~~~i~~~~l~~ 226 (316)
T PHA02544 216 ---TGKIDAGILSE 226 (316)
T ss_pred ---cCCCCHHHHHH
Confidence 23455544433
No 92
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.79 E-value=9.8e-18 Score=157.27 Aligned_cols=222 Identities=16% Similarity=0.226 Sum_probs=148.1
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEeccc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSA 101 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~~~~~~~ 101 (292)
+.|.|+++.+++|..++...+.+ -.++..++|+|+||||||++++.+++++ ...+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 67999999999999998765332 2334456799999999999999998876 24578888854
Q ss_pred hhccc--------------c--C-hHHHHHHHHHHHhhh--CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 102 IIDKY--------------I--G-ESARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 102 ~~~~~--------------~--~-~~~~~~~~~~~~~~~--~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
+.... . + .....+..+|..... ....||+|||+|.|.. ..+..|..+++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k-----------K~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT-----------KTQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------cHHHHHHHHHHH
Confidence 33211 0 0 122344455554422 2346999999999942 235667777765
Q ss_pred hhCCCCCCCeEEEEEeCC---CCCCChhhcCCCCcce-EEEccCCCHHHHHHHHHHHHcCcc-CCCCCCHHHHHHHcCCC
Q 022768 163 LDGFDQLGKVKMIMATNR---PDVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIA-KHGEIDYEAVVKLAEGF 237 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~---~~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~i~~~~~~~~~-~~~~~~~~~l~~~~~g~ 237 (292)
.. ....++.||+++|. ++.+.+++++ |+.. .+.|++++.+++.+|++.++.... .-.+..++.++.....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq- 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN- 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-
Confidence 43 23357889999986 4456788888 5543 578999999999999999987531 1111223444443333
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhh
Q 022768 238 NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 238 ~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 277 (292)
..||+|.++.-+...+..+....|+.+++.+|...+....
T Consensus 971 ~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhh
Confidence 2347776665555444444556899999999998775543
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3.2e-18 Score=153.96 Aligned_cols=220 Identities=12% Similarity=0.180 Sum_probs=146.9
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE--
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-- 96 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~-- 96 (292)
++.+...++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+.+.-..
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~ 70 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD 70 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCc
Confidence 456778999999999999999999999988652 345669999999999999999999999663100
Q ss_pred --------Eeccc-----------hhc--cccC---hHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcc
Q 022768 97 --------VVSSA-----------IID--KYIG---ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSA 148 (292)
Q Consensus 97 --------~~~~~-----------~~~--~~~~---~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~ 148 (292)
-.|.. ..+ .+.+ ...+.++.+...+. .....+++|||+|.+
T Consensus 71 ~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l----------- 139 (397)
T PRK14955 71 ADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML----------- 139 (397)
T ss_pred ccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------
Confidence 00000 000 0001 11233444433332 234479999999998
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCH
Q 022768 149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDY 227 (292)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~ 227 (292)
....+..+...++ .+.+.+++|++++....+.+.+++ |+ ..+.|++++.++....+...+...... .+...
T Consensus 140 ~~~~~~~LLk~LE-----ep~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 140 SIAAFNAFLKTLE-----EPPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred CHHHHHHHHHHHh-----cCCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5545555555544 333566777777777888888887 66 578999999999888888877643322 22234
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH-hcCCcccHHHHHHHH
Q 022768 228 EAVVKLAEGFNGADLRNVCTEAGMSAIR-AERDYVIHEDFMKAV 270 (292)
Q Consensus 228 ~~l~~~~~g~~~~di~~l~~~a~~~a~~-~~~~~i~~~~~~~a~ 270 (292)
+.++..+.| +.+.+...++.+..++.. .....|+.+++.+.+
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 566667776 777777777776665532 224468887776654
No 94
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.79 E-value=2.9e-17 Score=148.40 Aligned_cols=236 Identities=20% Similarity=0.258 Sum_probs=156.5
Q ss_pred hhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CC
Q 022768 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DA 92 (292)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~ 92 (292)
+.+.+..-.|....+.++|+++..++|...+...+.+ ..+.+++|+||||+|||++++.+++.+ +.
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~ 86 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKV 86 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 4444444445556678999999999999998653221 335679999999999999999999877 46
Q ss_pred cEEEEeccchhcc----------cc-------C-hHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHH
Q 022768 93 NFLKVVSSAIIDK----------YI-------G-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (292)
Q Consensus 93 ~~~~~~~~~~~~~----------~~-------~-~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~ 153 (292)
.++++++....+. .. + .....+..+...... ..+.||+|||+|.+... ...
T Consensus 87 ~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~----------~~~ 156 (394)
T PRK00411 87 VYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK----------EGN 156 (394)
T ss_pred EEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc----------CCc
Confidence 6888887643221 00 0 112223333333332 34579999999998511 112
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEEeCCCC---CCChhhcCCCCc-ceEEEccCCCHHHHHHHHHHHHcCccCC---CCCC
Q 022768 154 RTLMELLNQLDGFDQLGKVKMIMATNRPD---VLDPALLRPGRL-DRKIEIPLPNEQSRMEILKIHAAGIAKH---GEID 226 (292)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~-~~~i~l~~p~~~~r~~i~~~~~~~~~~~---~~~~ 226 (292)
..+..+++...... ..++.+|+++|... .+++.+.+ |+ ...+.|++++.++..++++.++...... .+..
T Consensus 157 ~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~ 233 (394)
T PRK00411 157 DVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEV 233 (394)
T ss_pred hHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhH
Confidence 34455554433222 23788899888753 46677776 44 3578999999999999999887532111 1222
Q ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 227 YEAVVKLAEG--FNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 227 ~~~l~~~~~g--~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
++.++..+.+ ...+.+.+++..|...|..++...|+.+++.+|+..+..
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 4555555532 145666688888888898888889999999999998854
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.79 E-value=6e-18 Score=161.43 Aligned_cols=223 Identities=24% Similarity=0.350 Sum_probs=157.9
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEEEE
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKV 97 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~~~ 97 (292)
.=.++.++|.++.++++.+.+.. ....+++|+||||+|||++++.++... ++.++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 34567789999988888887655 235678999999999999999999865 3445555
Q ss_pred eccchh--ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEE
Q 022768 98 VSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (292)
Q Consensus 98 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 175 (292)
+...+. ..+.|+.+..++.++..+....++||||||+|.+++.... +....+....|..++. .+.+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeEEE
Confidence 544444 3456778888889998888778899999999999765422 1122233333444433 2678899
Q ss_pred EEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCH--HHH---HHHc-----CCCCHH
Q 022768 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY--EAV---VKLA-----EGFNGA 240 (292)
Q Consensus 176 ~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~--~~l---~~~~-----~g~~~~ 240 (292)
++|+..+ ..++++.+ || ..|.++.|+.+++..|++.+...+.....+.+ +.+ ...+ ..+-|.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9998754 46899998 99 58999999999999999987665444433333 222 2223 334677
Q ss_pred HHHHHHHHHHHHHHH----hcCCcccHHHHHHHHHHHhh
Q 022768 241 DLRNVCTEAGMSAIR----AERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 241 di~~l~~~a~~~a~~----~~~~~i~~~~~~~a~~~~~~ 275 (292)
....++++|...... .....|+.+|+.+.+.....
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 899999999875532 22346888999998877664
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=2.3e-17 Score=150.02 Aligned_cols=210 Identities=19% Similarity=0.255 Sum_probs=143.0
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
++.+++.++|.+|++++|++.+++.|...+..- ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~ 71 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED 71 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC
Confidence 677888999999999999999999999988652 345679999999999999999999988542
Q ss_pred --------------------EEEEeccchhccccChHHHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcch
Q 022768 94 --------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSAD 149 (292)
Q Consensus 94 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~~ 149 (292)
++.++.... .....++.+.... ......|++|||+|.+ .
T Consensus 72 ~~~c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t 134 (451)
T PRK06305 72 QEPCNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------T 134 (451)
T ss_pred CCCCcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------C
Confidence 112211110 0112232222222 2245689999999998 5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHH
Q 022768 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYE 228 (292)
Q Consensus 150 ~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~ 228 (292)
...+..|...++. +.+.+.+|++++.+..+.+.+++ |+ ..+.|++++.++....+...+...... ....+.
T Consensus 135 ~~~~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~ 206 (451)
T PRK06305 135 KEAFNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALL 206 (451)
T ss_pred HHHHHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5555555555443 33577788888888889999998 77 678999999999998888877643322 222355
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 229 AVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 229 ~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
.++..+.| +.+++...++.+..+ .+ ..|+.+++.+++
T Consensus 207 ~L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 207 PIARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 66677766 566666666554432 22 347777665544
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.1e-17 Score=149.68 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=142.6
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE-
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV- 97 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~- 97 (292)
+...++.++|.+|++++|++.+++.+...+... ..+++++|+||+|+|||++++.+++.+.++....
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~ 71 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDP 71 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 455678899999999999999999999998652 3456899999999999999999999886521110
Q ss_pred ------eccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC
Q 022768 98 ------VSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (292)
Q Consensus 98 ------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 167 (292)
+..++. .........++.++..+. ...+.+++|||+|.+ .......+...+ +.
T Consensus 72 ~~~~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~l---e~-- 134 (367)
T PRK14970 72 NEDFSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTL---EE-- 134 (367)
T ss_pred CCCCCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHH---hC--
Confidence 000000 001111234445444432 234579999999988 343444444433 32
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
+...+.+|++++.+..+.+.+++ |+ ..+.+++|+.++...++...+...... .+..++.++..+.| +.+.+...+
T Consensus 135 ~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~l 210 (367)
T PRK14970 135 PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIF 210 (367)
T ss_pred CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 33456777778888888899988 66 568999999999998888877654432 22334556666665 666666666
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
+....++ +.. |+.+++.+.+.
T Consensus 211 ekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 211 DRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHhc---CCC-CCHHHHHHHhC
Confidence 6555443 222 77777776654
No 98
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.78 E-value=1.1e-17 Score=161.92 Aligned_cols=166 Identities=28% Similarity=0.411 Sum_probs=120.2
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc--------
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-------- 104 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-------- 104 (292)
+++|++++++++.+++...... +...+.+++|+||||+|||++++++|+.++.+++.+++....+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4889999999999987653211 1233557999999999999999999999999999998654321
Q ss_pred -cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh----------hCCCCCCCeE
Q 022768 105 -KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL----------DGFDQLGKVK 173 (292)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~ 173 (292)
.+.+.....+...+..+....| |++|||+|.+.... ......+|.++++.. ......++++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 2344444445556666655554 89999999996422 111234555555421 0011224789
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~ 216 (292)
+|+|+|..+.+++++++ || ..+.|+.|+.+++.+|++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 99999999999999999 88 578999999999999998776
No 99
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.8e-17 Score=153.87 Aligned_cols=216 Identities=17% Similarity=0.194 Sum_probs=147.1
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----- 93 (292)
|..+...++|.+|++++|++++++.|+..+..- ..++.+||+||+|+|||++++.+|+.+.+.
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~ 70 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP 70 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC
Confidence 445677899999999999999999999998652 345679999999999999999999998652
Q ss_pred --EEEEecc-c-----hhc--cccC---hHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 94 --FLKVVSS-A-----IID--KYIG---ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 94 --~~~~~~~-~-----~~~--~~~~---~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
+-.+..+ . ..+ ...+ .....++.+...+. .....+++|||+|.+ ....+..|
T Consensus 71 ~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naL 139 (563)
T PRK06647 71 MPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNAL 139 (563)
T ss_pred CCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHH
Confidence 1111000 0 000 0001 11233444433322 245679999999998 55555555
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (292)
+..++ .+.+.+++|++++.+..+.+.+++ |+ ..+.|.+++.++..+.++..+...... .+..+..++..+.
T Consensus 140 LK~LE-----epp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 140 LKTIE-----EPPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred HHhhc-----cCCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 44443 344678888888888889999998 77 578999999999998888877543332 2233455666777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
| +.+++..+++.+..++ ...++.+++.+++
T Consensus 212 G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred C-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 6 7888888887765432 2457777766654
No 100
>PRK06893 DNA replication initiation factor; Validated
Probab=99.77 E-value=4.3e-17 Score=136.03 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=132.9
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~ 101 (292)
.+++.+|++.++.+... .+...... . .....+.++|+||||+||||+++++|+++ +..+.++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKN-------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHH-------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 45678999998765432 11111111 1 11223468999999999999999999886 34455555432
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC-C
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN-R 180 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~-~ 180 (292)
... .....+... ....+|+|||++.+.+ +...+..+..+++.... .++.++|.|++ .
T Consensus 78 ~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~~~ 135 (229)
T PRK06893 78 SQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISADCS 135 (229)
T ss_pred hhh--------hhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCC
Confidence 110 111222222 2347999999998743 33445567777776542 23344455554 4
Q ss_pred CCCCC---hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 022768 181 PDVLD---PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 181 ~~~l~---~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
|..++ ++++++.+++..+.+++|+.+++.++++..+...... .+...+.|+....| +.+.+..+++.....+...
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 214 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA 214 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc
Confidence 55443 7888855567789999999999999999887644332 22224455666665 7778888888775545433
Q ss_pred cCCcccHHHHHHHHH
Q 022768 257 ERDYVIHEDFMKAVR 271 (292)
Q Consensus 257 ~~~~i~~~~~~~a~~ 271 (292)
++ .||.+.+++++.
T Consensus 215 ~~-~it~~~v~~~L~ 228 (229)
T PRK06893 215 QR-KLTIPFVKEILG 228 (229)
T ss_pred CC-CCCHHHHHHHhc
Confidence 44 699999988763
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.77 E-value=7.7e-18 Score=143.12 Aligned_cols=223 Identities=26% Similarity=0.358 Sum_probs=149.9
Q ss_pred hcccCCCCCccccccccHHHHHH---HHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---E
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRE---LRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---F 94 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~ 94 (292)
++++..+|-++++.+|+++.+.+ |..++.. ..-..++||||||+|||++|+.++.....+ +
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrf 193 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRF 193 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEE
Confidence 66778899999999999987643 3333322 234469999999999999999999988776 4
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhhh-----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 169 (292)
++++... .....++.+|..++. ...-||||||+|++ +...|..++-.++.
T Consensus 194 velSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE~------- 248 (554)
T KOG2028|consen 194 VELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVEN------- 248 (554)
T ss_pred EEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceecc-------
Confidence 4444333 233445566666543 23469999999998 56566666554432
Q ss_pred CCeEEEEEe--CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc---C-----ccCCC---CCC---HHHHHHH
Q 022768 170 GKVKMIMAT--NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA---G-----IAKHG---EID---YEAVVKL 233 (292)
Q Consensus 170 ~~~~vi~t~--~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~---~-----~~~~~---~~~---~~~l~~~ 233 (292)
+.+.+|++| |+.-.++.++.+ || .++.+...+.+....|+.+... + ..... .++ ++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 578888876 445578999999 66 5677888888888888776432 1 11111 122 3445556
Q ss_pred cCCCCHHHHHHHHHHHHH---HHHHhc----CCcccHHHHHHHHHHHhhhhhhchhhhhhhh
Q 022768 234 AEGFNGADLRNVCTEAGM---SAIRAE----RDYVIHEDFMKAVRKLNEAKKLESSAHYNAD 288 (292)
Q Consensus 234 ~~g~~~~di~~l~~~a~~---~a~~~~----~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (292)
+.| |.+..++...+ .+..+. +..++.+|+.++++.-...+++...++|+-+
T Consensus 326 sdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntI 383 (554)
T KOG2028|consen 326 SDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTI 383 (554)
T ss_pred cCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHH
Confidence 665 55544443333 233332 3479999999999998888888777777643
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=2.6e-17 Score=148.89 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=143.2
Q ss_pred CCCcccc-ccccHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 022768 27 GNVSYSA-VGGLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVV 98 (292)
Q Consensus 27 ~~~~~~~-l~g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~~ 98 (292)
+..+|++ ++|... +...+..+...+ + .....++|+||+|+|||+|++++++++ +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5688888 556544 334444443322 1 224568999999999999999999987 56788888
Q ss_pred ccchhccccChHHH-HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEE
Q 022768 99 SSAIIDKYIGESAR-LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (292)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t 177 (292)
+..+...+...... .+........ ...+|+|||+|.+.+ ....+..+..+++.+.. .+..++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~~~~---~~~~iiits 239 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG---------KERTQEEFFHTFNALHE---NGKQIVLTS 239 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCCEEEec
Confidence 77665433221111 1111112222 247999999998843 22345566666665532 123334444
Q ss_pred eCCCCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 178 TNRPDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 178 ~~~~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
...+.. +++.++++...+..+.+++|+.++|..|++..+...... .+-.++.++....+ +.+++..++.....+|
T Consensus 240 ~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 240 DRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 334443 567888833334689999999999999999998754333 22234556666665 8889999999998888
Q ss_pred HHhcCCcccHHHHHHHHHHHh
Q 022768 254 IRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~~~~ 274 (292)
...+ ..||.+.+.+++....
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhc
Confidence 6655 4599999999998763
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=1.9e-17 Score=151.61 Aligned_cols=221 Identities=22% Similarity=0.276 Sum_probs=144.3
Q ss_pred CCCCcccccc-ccHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEE
Q 022768 26 PGNVSYSAVG-GLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (292)
Q Consensus 26 ~~~~~~~~l~-g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~ 97 (292)
.+..+|++.+ |... +...+..+...+ + ....+++|+||+|+|||||++++++++ +..++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3667888854 4333 455555554432 1 223569999999999999999999987 4567888
Q ss_pred eccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t 177 (292)
++..+...+...........|.... ..+.+|+|||+|.+.+ ....+..+..+++.+... +..++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~l~~~---~~~iiits 251 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAG---------KERTQEEFFHTFNALHEA---GKQIVLTS 251 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHHC---CCcEEEEC
Confidence 8877654433222111111222211 2457999999999843 223456666666655421 23344444
Q ss_pred eCCCCC---CChhhcCCCCc--ceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 022768 178 TNRPDV---LDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGM 251 (292)
Q Consensus 178 ~~~~~~---l~~~l~~~~r~--~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~ 251 (292)
...|.. +++++++ || +..+.+.+|+.++|.+|++..+...... .+..++.++....| +.+.+..++.....
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 444444 6688888 66 4689999999999999999988753322 11224445555554 78888889998888
Q ss_pred HHHHhcCCcccHHHHHHHHHHHh
Q 022768 252 SAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 252 ~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
++...++ .||.+.+.+++..+.
T Consensus 329 ~~~~~~~-~it~~~~~~~l~~~~ 350 (450)
T PRK00149 329 YASLTGK-PITLELAKEALKDLL 350 (450)
T ss_pred HHHhhCC-CCCHHHHHHHHHHhh
Confidence 8766654 599999999999873
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=3.1e-17 Score=153.24 Aligned_cols=220 Identities=11% Similarity=0.201 Sum_probs=146.8
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE---
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--- 95 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~--- 95 (292)
+..++..++|.+|++++|++.+++.|.+.+..- .-++.+||+||+|+||||+|+.+|+.+.+...
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~ 70 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD 70 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCc
Confidence 456778899999999999999999999987642 34567999999999999999999999976321
Q ss_pred --------E-Eecc---------chhc--cccC---hHHHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcc
Q 022768 96 --------K-VVSS---------AIID--KYIG---ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSA 148 (292)
Q Consensus 96 --------~-~~~~---------~~~~--~~~~---~~~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~ 148 (292)
. +..+ ...+ .+.+ ...+.++.+.... ......|++|||+|.+
T Consensus 71 ~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L----------- 139 (620)
T PRK14954 71 PVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML----------- 139 (620)
T ss_pred cccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------
Confidence 0 0000 0000 0011 1123444444333 2234579999999998
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCH
Q 022768 149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDY 227 (292)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~ 227 (292)
....+..|+..++. +.+.+++|++++....+.+.+++ |+ ..+.|.+++.++....+...+...... .+...
T Consensus 140 t~~a~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal 211 (620)
T PRK14954 140 STAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADAL 211 (620)
T ss_pred CHHHHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55555555555543 33467777777778888889988 66 789999999999888888776543322 22335
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH-hcCCcccHHHHHHHH
Q 022768 228 EAVVKLAEGFNGADLRNVCTEAGMSAIR-AERDYVIHEDFMKAV 270 (292)
Q Consensus 228 ~~l~~~~~g~~~~di~~l~~~a~~~a~~-~~~~~i~~~~~~~a~ 270 (292)
+.++..+.| +.+++...++....++.. .....|+.+++.+.+
T Consensus 212 ~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 212 QLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 666677776 666777777666554421 124467777776654
No 105
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=5.8e-17 Score=152.11 Aligned_cols=199 Identities=19% Similarity=0.241 Sum_probs=138.7
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE---
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--- 95 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~--- 95 (292)
+.++...++|.+|++++|++++++.|..++..- .-.+++||+||+|+|||++|+.+|+.+.+...
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~ 70 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP 70 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC
Confidence 567788999999999999999999999988752 23567999999999999999999999876311
Q ss_pred ------EEecc---------ch--hccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHH
Q 022768 96 ------KVVSS---------AI--IDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (292)
Q Consensus 96 ------~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (292)
.+..+ ++ .........+.+++++..+.. ....|++|||+|.| ......
T Consensus 71 ~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~n 139 (620)
T PRK14948 71 TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFN 139 (620)
T ss_pred CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHH
Confidence 11000 00 000111234455666655543 34579999999999 555556
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHH
Q 022768 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKL 233 (292)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~ 233 (292)
.|+..++ .+...+++|+++++++.+.+.+++ |+ ..+.|+.++.++....+.+.+...... ....+..++..
T Consensus 140 aLLK~LE-----ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 140 ALLKTLE-----EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHh-----cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6655554 344577888888888888899998 77 778999999888888777776543222 12235666777
Q ss_pred cCCCCHHHHHHHHHHH
Q 022768 234 AEGFNGADLRNVCTEA 249 (292)
Q Consensus 234 ~~g~~~~di~~l~~~a 249 (292)
+.| +.+++..+++..
T Consensus 212 s~G-~lr~A~~lLekl 226 (620)
T PRK14948 212 SQG-GLRDAESLLDQL 226 (620)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 776 566777666654
No 106
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.77 E-value=1.4e-17 Score=133.49 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=139.1
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-C----CcEEEEe
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-D----ANFLKVV 98 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-~----~~~~~~~ 98 (292)
+.|+|+.+++++|+++.+++|.-.... ..-.+++|.||||+||||-+.++|+++ | ..++++|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 478999999999999999999887654 234579999999999999999999987 3 2456777
Q ss_pred ccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 99 SSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
.++-.+- +..+.....|..-+. ....|++|||+|.+ ....|.++...++... ....+
T Consensus 86 ASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiyS-----~ttRF 146 (333)
T KOG0991|consen 86 ASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIYS-----NTTRF 146 (333)
T ss_pred Ccccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHHc-----ccchh
Confidence 6664432 223333344554443 33479999999999 7778888888777654 35568
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
..+||..+++-+++.+ || ..+++...+..+...-+........+. .+..++.+...++| |+++.++......
T Consensus 147 alaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQst~ 219 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQSTV 219 (333)
T ss_pred hhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHHHHh
Confidence 8899999999999999 77 556777777776655444444433333 34456777777777 9999998876544
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.77 E-value=7.3e-17 Score=134.80 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=137.2
Q ss_pred CCCCcccccc--ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 26 PGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 26 ~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
.++.+|++++ +.+.+...+..+... .....+++|+||+|+|||++++++++.. +.+++++++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3557899977 345566666665432 2446789999999999999999999876 5577777765
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
..... +. ......+|+|||+|.+ +...+..+..+++.... .+..++|++++.
T Consensus 80 ~~~~~------------~~--~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLA------------FD--FDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHH------------Hh--hcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 54211 11 1223479999999988 44556677777766542 234345555543
Q ss_pred CC---CCChhhcCCCCc--ceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 022768 181 PD---VLDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 181 ~~---~l~~~l~~~~r~--~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~ 254 (292)
+. .+.+.+.+ |+ ...+.+++|+.+++..+++......... .+..+..|+....| +.+++..+++....+|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 22 24567776 55 5789999999998888888776543332 22234556665555 88888889998777665
Q ss_pred HhcCCcccHHHHHHHHH
Q 022768 255 RAERDYVIHEDFMKAVR 271 (292)
Q Consensus 255 ~~~~~~i~~~~~~~a~~ 271 (292)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 555 5799999999875
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.77 E-value=1e-16 Score=134.23 Aligned_cols=210 Identities=13% Similarity=0.175 Sum_probs=136.7
Q ss_pred CCCCCcccccc--ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEec
Q 022768 25 DPGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVS 99 (292)
Q Consensus 25 ~~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~ 99 (292)
.++..+|++.+ ++..++..+..+... ....+++|+||+|+||||+++++++.+. ..+.++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 44556788876 456667777666533 2345799999999999999999998763 34555554
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
...... .......... ..+|+|||++.+.+ +...+..+..+++...+ .+++.+|+|++
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCC
Confidence 332111 1122222222 25899999998832 34566777777776542 23444666665
Q ss_pred C-CCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 022768 180 R-PDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 180 ~-~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~ 254 (292)
. +.. +.++++++...+.++.+.+|+.+++.++++..+...... .+-..+.|+....| +.+.+..+++.....+.
T Consensus 140 ~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l 218 (235)
T PRK08084 140 RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASI 218 (235)
T ss_pred CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Confidence 4 443 578999944445899999999999999998866543322 22224556666665 78888888888654444
Q ss_pred HhcCCcccHHHHHHHHH
Q 022768 255 RAERDYVIHEDFMKAVR 271 (292)
Q Consensus 255 ~~~~~~i~~~~~~~a~~ 271 (292)
..+ ..||.+.+++++.
T Consensus 219 ~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 219 TAQ-RKLTIPFVKEILK 234 (235)
T ss_pred hcC-CCCCHHHHHHHHc
Confidence 444 4599999988764
No 109
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.77 E-value=5.7e-17 Score=142.33 Aligned_cols=212 Identities=22% Similarity=0.239 Sum_probs=138.8
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cEEE
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLK 96 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~~~ 96 (292)
..+.+.|.+|++++|.+++++.+..++... ...+++|+||+|+|||++++.+++.+.. .++.
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 457889999999999999999999987642 2336899999999999999999998733 3444
Q ss_pred EeccchhccccChHHHHHHHHHHHh-hh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYA-RD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
++...... .......+....... .. ..+.+|+|||+|.+ ....+..|..+++.. ...+.+
T Consensus 74 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~l 135 (319)
T PRK00440 74 LNASDERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY-----SQNTRF 135 (319)
T ss_pred eccccccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----CCCCeE
Confidence 43322111 001111222221111 11 23579999999998 455555666655432 234667
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
|++++.+..+.+.+++ |+ ..+.|++++.++...+++.++...... .+..+..++..+.| +.+.+...++.+.
T Consensus 136 Il~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~--- 208 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA--- 208 (319)
T ss_pred EEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---
Confidence 7788888888888887 76 468999999999999999888754432 22235556666655 4444444444333
Q ss_pred HHhcCCcccHHHHHHHHHHH
Q 022768 254 IRAERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~~~ 273 (292)
.. ...||.+++.+++...
T Consensus 209 ~~--~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 209 AT--GKEVTEEAVYKITGTA 226 (319)
T ss_pred Hc--CCCCCHHHHHHHhCCC
Confidence 22 3568888888776543
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=5.8e-17 Score=152.31 Aligned_cols=215 Identities=18% Similarity=0.216 Sum_probs=143.2
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE----
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL---- 95 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~---- 95 (292)
+.+.+.++|.+|++|+|++++++.|..++..- ..++.+||+||+|+|||++++.+++.+.+...
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~ 71 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG 71 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 44567899999999999999999999988652 33566899999999999999999998864221
Q ss_pred -EEeccc------------hh--ccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 96 -KVVSSA------------II--DKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 96 -~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
.++.+. +. +.......+.++.+...+.. ....|++|||+|.| .......|
T Consensus 72 ~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naL 140 (585)
T PRK14950 72 RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNAL 140 (585)
T ss_pred CCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHH
Confidence 000000 00 00001122334444433322 34579999999998 55555555
Q ss_pred HHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcC
Q 022768 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAE 235 (292)
Q Consensus 157 ~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (292)
+..++. +...+++|++++..+.+.+.+++ |+ ..+.|..++..+....+...+...... ....+..++..+.
T Consensus 141 Lk~LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 141 LKTLEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 554443 33567777788878888888888 66 678999999999998888877654332 1223456667777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 236 GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 236 g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
| +.+++.+.++....+ ....|+.+++.+.+
T Consensus 213 G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 213 G-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 6 777777777765432 23458887776543
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=9.3e-17 Score=155.97 Aligned_cols=224 Identities=22% Similarity=0.310 Sum_probs=156.9
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----------
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---------- 91 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---------- 91 (292)
+.....+-+++.++|+++.++++...+.. ....+++|+||||+|||++++.+|+.+.
T Consensus 177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 177 LTAQAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred HHHHhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 33455778899999999998888887654 2345799999999999999999999862
Q ss_pred CcEEEEeccchh--ccccChHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 92 ANFLKVVSSAII--DKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
..++.++...+. ..+.|+.+..++.++..+.. ..+.||||||+|.+.+..+... .......|...+ .
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l-------~ 313 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPAL-------A 313 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHh-------h
Confidence 346666666654 35678888999999998865 3578999999999976442211 111122233333 2
Q ss_pred CCCeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-----CCCCHHHHHHHcCCC-
Q 022768 169 LGKVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-----GEIDYEAVVKLAEGF- 237 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-----~~~~~~~l~~~~~g~- 237 (292)
.+.+.+|++|+..+ .+++++.+ || ..|.++.|+.+++..|++.....+... .+..+..++..+.+|
T Consensus 314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 36788999998642 47899999 99 689999999999999987665543221 223355666777766
Q ss_pred ----CHHHHHHHHHHHHHHHHHh-cCCcccHHHHHHHHH
Q 022768 238 ----NGADLRNVCTEAGMSAIRA-ERDYVIHEDFMKAVR 271 (292)
Q Consensus 238 ----~~~di~~l~~~a~~~a~~~-~~~~i~~~~~~~a~~ 271 (292)
-|.....++++|+...... ....+..+++.+.+.
T Consensus 391 ~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~ 429 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIA 429 (852)
T ss_pred ccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 4677788899887766543 333444455554443
No 112
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.75 E-value=9e-17 Score=131.62 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=135.4
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
..+.++.+++|+|++.+++.|.+....++.+ .+..++||+|++|||||+++|++..+. |..++++...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3567899999999999999999999887655 568899999999999999999999987 4456666554
Q ss_pred chhccccChHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 101 AIIDKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
.+.. +..+++..+. ..+=|||+||+. .+........|..+|+-.-+ ..+.++++.+|+|
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs----------Fe~~d~~yk~LKs~LeGgle-~~P~NvliyATSN 149 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS----------FEEGDTEYKALKSVLEGGLE-ARPDNVLIYATSN 149 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC----------CCCCcHHHHHHHHHhcCccc-cCCCcEEEEEecc
Confidence 4422 2344444432 234699999863 12233444666666654322 4456899999999
Q ss_pred CCCCCChhhcC---------------------CCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCC---CHHH--HHHH
Q 022768 180 RPDVLDPALLR---------------------PGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI---DYEA--VVKL 233 (292)
Q Consensus 180 ~~~~l~~~l~~---------------------~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~---~~~~--l~~~ 233 (292)
..+.++..... ..||+..+.|.+|+.++..+|++.++....+.-+. ..+. .+..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 76543332111 13999999999999999999999999755443221 1111 2233
Q ss_pred cCCCCHHHHHHHHHH
Q 022768 234 AEGFNGADLRNVCTE 248 (292)
Q Consensus 234 ~~g~~~~di~~l~~~ 248 (292)
-.|.|++-..+.+..
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 456788877777764
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=6.4e-17 Score=146.94 Aligned_cols=223 Identities=16% Similarity=0.204 Sum_probs=142.0
Q ss_pred CCCCcccccc-ccHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEE
Q 022768 26 PGNVSYSAVG-GLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (292)
Q Consensus 26 ~~~~~~~~l~-g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~ 97 (292)
.|..+|++.+ |... +...+..+...+ ....+++|+||+|+|||||++++++++ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~------------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP------------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3668899876 5433 233444433221 123469999999999999999999986 3467888
Q ss_pred eccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t 177 (292)
++..+...........-..-|.......+.+|+|||++.+.+ ....+..+..+++.+.. .+..+++++
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---------~~~~q~elf~~~n~l~~---~~k~iIits 234 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQIVICS 234 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---------cHHHHHHHHHHHHHHHH---cCCeEEEEC
Confidence 876655433221111001122222223468999999998743 22344556666665542 123444444
Q ss_pred eCCCCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 178 TNRPDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 178 ~~~~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
.+.|.. +.+++.++...+..+.+.+|+.+.|..|++..+...... .+..++.++....| +.+++..++.....++
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 455554 456788833345688999999999999999888643322 11224455555555 7889999999888877
Q ss_pred HHhcCCcccHHHHHHHHHHHh
Q 022768 254 IRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~~~~ 274 (292)
...++ .+|.+.+.++++.+.
T Consensus 314 ~~~~~-~it~~~a~~~L~~~~ 333 (440)
T PRK14088 314 ETTGE-EVDLKEAILLLKDFI 333 (440)
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 66665 599999999998874
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.75 E-value=1.3e-16 Score=133.15 Aligned_cols=205 Identities=19% Similarity=0.297 Sum_probs=137.9
Q ss_pred CCCCcccccc--ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 26 PGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 26 ~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
+.+.+|++.+ +....++.+.+++.. ..+.+++|+||+|||||++++++++.+ +.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 3446778876 356677888777532 346789999999999999999999876 4577888877
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
.+.... ...+... ..+.+|+|||+|.+.. ....+..+..+++..... +. .+|+|++.
T Consensus 76 ~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~~---~~-~iIits~~ 132 (226)
T TIGR03420 76 ELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG---------QPEWQEALFHLYNRVREA---GG-RLLIAGRA 132 (226)
T ss_pred HHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHHc---CC-eEEEECCC
Confidence 764321 1222222 2236999999998821 123356677777654321 22 45566654
Q ss_pred -CCCCC---hhhcCCCCc--ceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 181 -PDVLD---PALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 181 -~~~l~---~~l~~~~r~--~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
+..+. +.+.+ |+ ...+.+++|+.+++..+++.+....... .+..+..|+....| ++++++.+++.+...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 33322 56666 54 4789999999999999998876543322 22234556665554 8999999999998877
Q ss_pred HHhcCCcccHHHHHHHH
Q 022768 254 IRAERDYVIHEDFMKAV 270 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~ 270 (292)
...+. .|+.+.+.+.+
T Consensus 210 ~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAKR-KITIPFVKEVL 225 (226)
T ss_pred HHhCC-CCCHHHHHHHh
Confidence 66554 69999888765
No 115
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.75 E-value=1.2e-16 Score=139.05 Aligned_cols=225 Identities=18% Similarity=0.248 Sum_probs=144.8
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------cE--EEE
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------NF--LKV 97 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-------~~--~~~ 97 (292)
.+++|++++|++++++.+.-++..+ ...++||.|+||+|||++++++++.++. ++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 5788999999999999988765322 1368999999999999999999999842 11 100
Q ss_pred ecc---------chhc---------------cccChH--HHHHH-H--HHH--HhhhCCCEEEEEcccccccCCcCCCCC
Q 022768 98 VSS---------AIID---------------KYIGES--ARLIR-E--MFG--YARDHQPCIIFMDEIDAIGGRRFSEGT 146 (292)
Q Consensus 98 ~~~---------~~~~---------------~~~~~~--~~~~~-~--~~~--~~~~~~~~il~lDe~d~l~~~~~~~~~ 146 (292)
... .+.. ...|.. ...+. . .+. .......++|++||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 000 0000 011110 00000 0 010 001133479999999999
Q ss_pred cchHHHHHHHHHHHHHhh------C--CCCCCCeEEEEEeCCCC-CCChhhcCCCCcceEEEccCCCH-HHHHHHHHHHH
Q 022768 147 SADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLPNE-QSRMEILKIHA 216 (292)
Q Consensus 147 ~~~~~~~~~l~~~l~~~~------~--~~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~~i~l~~p~~-~~r~~i~~~~~ 216 (292)
+...+..|.+.+.... + .....++++++|.|..+ .+++.+.+ ||...+.+++|.. +++.++++...
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 8889999998887532 0 11234788888888644 58889998 9999999988866 88899988754
Q ss_pred cCcc----C------CCCCCHHH-----------------------HHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCccc
Q 022768 217 AGIA----K------HGEIDYEA-----------------------VVKLAE-GFNGADLRNVCTEAGMSAIRAERDYVI 262 (292)
Q Consensus 217 ~~~~----~------~~~~~~~~-----------------------l~~~~~-g~~~~di~~l~~~a~~~a~~~~~~~i~ 262 (292)
.... . ......+. ++..+. ....+++. +++.|..+|..+++..|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 217 AYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVG 295 (334)
T ss_pred cccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeC
Confidence 2110 0 00111111 112222 12445555 999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 022768 263 HEDFMKAVRKLNEAKK 278 (292)
Q Consensus 263 ~~~~~~a~~~~~~~~~ 278 (292)
.+|+.++..-+-.+..
T Consensus 296 ~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 296 RSHLRSVATMALSHRL 311 (334)
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999988876665443
No 116
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=2.4e-16 Score=145.46 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=133.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~ 141 (292)
..++|+|++|+|||||++++++++ +..++++.+.++...+...........|... .....+|+|||++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~g-- 391 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLED-- 391 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccC--
Confidence 359999999999999999999976 4577888887766544332222111223222 23458999999998853
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC-C---CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-D---VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~-~---~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
....+..++++++.+... ++ .+|+|++.+ . .+.+.|+++..++.++.+..|+.+.|..|++..+.
T Consensus 392 -------ke~tqeeLF~l~N~l~e~---gk-~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 392 -------KESTQEEFFHTFNTLHNA---NK-QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred -------CHHHHHHHHHHHHHHHhc---CC-CEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 344567777888776532 22 355566653 3 46788999544577889999999999999999887
Q ss_pred CccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 218 GIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 218 ~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
...+. .+--++.|+....+ +.+.+..++.....++...++ .|+.+.+.++++.+..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~~-~itl~la~~vL~~~~~ 517 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNRQ-PVDLGLTEIVLRDLIP 517 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhhc
Confidence 65433 11123445555543 788999999988887766654 5999999999987754
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=1.5e-16 Score=141.84 Aligned_cols=184 Identities=17% Similarity=0.276 Sum_probs=123.4
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE---------------
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--------------- 94 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--------------- 94 (292)
.|++|+|++++++.|.+.+..... .+..++...++.+||+||+|+|||++|+.+|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999999976421 11122233567899999999999999999999875531
Q ss_pred --------EEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 95 --------LKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
..+.... . ......++.++..+.. ....|++|||+|.+ +...+..|+..+++
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 1111100 0 1123335566555543 34579999999999 66666666666643
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
+.+++++|.+|++++.+.+.++| |+ ..+.|++|+.++..+.+.... ... ......++..+.|. ++..
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~-~~~A 210 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGH-IGRA 210 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCC-HHHH
Confidence 33456677777778999999999 77 789999999998887776322 121 12245677788874 4444
Q ss_pred HHH
Q 022768 243 RNV 245 (292)
Q Consensus 243 ~~l 245 (292)
..+
T Consensus 211 ~~l 213 (394)
T PRK07940 211 RRL 213 (394)
T ss_pred HHH
Confidence 333
No 118
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.73 E-value=5.6e-16 Score=131.48 Aligned_cols=145 Identities=24% Similarity=0.250 Sum_probs=111.2
Q ss_pred CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC------------CCCCChhhcCCC
Q 022768 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR------------PDVLDPALLRPG 192 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~------------~~~l~~~l~~~~ 192 (292)
-|+||||||+|.| +-++-..|...+.. . -..++|.++|. |+.++.++++
T Consensus 291 VpGVLFIDEvHmL-----------DIE~FsFlnrAlEs-----e-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 291 VPGVLFIDEVHML-----------DIECFSFLNRALES-----E-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred ecceEEEechhhh-----------hHHHHHHHHHHhhc-----c-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 4789999999999 66666666666543 1 23456666653 5678889998
Q ss_pred CcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 193 r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
|+ ..|...+++.++.+.|++.++....+. .+-.++.|+.+...-|.+...+|+..|...|.+++...|..+|+.+|..
T Consensus 352 Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 77 778889999999999999988765444 3344677777777778999999999999999999999999999999999
Q ss_pred HHhh-hhhhchhhhhhhhc
Q 022768 272 KLNE-AKKLESSAHYNADF 289 (292)
Q Consensus 272 ~~~~-~~~~~~~~~~~~~~ 289 (292)
-+.. +.+-+....|+++|
T Consensus 431 lF~D~krSv~~v~~~~~~~ 449 (450)
T COG1224 431 LFLDVKRSVEYVEKYEGLL 449 (450)
T ss_pred HHhhHHHHHHHHHHHHhhc
Confidence 8876 34444455666544
No 119
>PRK08727 hypothetical protein; Validated
Probab=99.73 E-value=1e-15 Score=128.11 Aligned_cols=207 Identities=20% Similarity=0.289 Sum_probs=129.4
Q ss_pred CCCCccccccccHH-HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc
Q 022768 26 PGNVSYSAVGGLSD-QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (292)
Q Consensus 26 ~~~~~~~~l~g~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~ 101 (292)
++..+|++.++-.. ....+...... .....++|+||+|+||||++.++++.+ +..+.++...+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 34568888665443 33333322211 123469999999999999999998765 44555665433
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC-
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR- 180 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~- 180 (292)
.. ..+...+.... ...+|+|||++.+.. ....+..+.++++.... .+..+|+|++.
T Consensus 80 ~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~~----~~~~vI~ts~~~ 136 (233)
T PRK08727 80 AA--------GRLRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRARA----AGITLLYTARQM 136 (233)
T ss_pred hh--------hhHHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH----cCCeEEEECCCC
Confidence 22 12223333333 336999999998843 23345667777776542 23446666664
Q ss_pred CCC---CChhhcCCCCc--ceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 022768 181 PDV---LDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 181 ~~~---l~~~l~~~~r~--~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~ 254 (292)
+.. +.+++++ |+ ...+.+++|+.+++.++++.++...... .+..++.|+..+.| ..+.+..+++.....+.
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 444 4688988 64 5788999999999999999876543322 11223445555554 45555555777766565
Q ss_pred HhcCCcccHHHHHHHHHH
Q 022768 255 RAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 255 ~~~~~~i~~~~~~~a~~~ 272 (292)
..++ .||.+.+.+.+..
T Consensus 214 ~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HhCC-CCCHHHHHHHHhh
Confidence 5544 6999999888754
No 120
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-15 Score=134.89 Aligned_cols=227 Identities=20% Similarity=0.299 Sum_probs=161.6
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----EEEEeccchh
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-----FLKVVSSAII 103 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-----~~~~~~~~~~ 103 (292)
.--+.+.++++.++++..++...+.+ ..+.+++++|+||||||.+++.+++++... ++++||....
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~ 84 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR 84 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC
Confidence 33344999999999999998776544 445669999999999999999999988444 8999988765
Q ss_pred cccc---------------C-hHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC
Q 022768 104 DKYI---------------G-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 166 (292)
Q Consensus 104 ~~~~---------------~-~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 166 (292)
+.+. | ........++..... ...-||+|||+|.|..+. ...|..++......
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~ 153 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN 153 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc
Confidence 4321 0 011222233333322 345799999999996432 16777777765543
Q ss_pred CCCCCeEEEEEeCCCC---CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCH---HHH---HHHcCCC
Q 022768 167 DQLGKVKMIMATNRPD---VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY---EAV---VKLAEGF 237 (292)
Q Consensus 167 ~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~---~~l---~~~~~g~ 237 (292)
..++.+|+.+|... .+++.+.++... ..|.|++++.+|..+|+..+.........++- ... +....|
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G- 229 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG- 229 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-
Confidence 45788999998863 578888884333 46899999999999999988875433333322 222 233334
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhh
Q 022768 238 NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKL 279 (292)
Q Consensus 238 ~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 279 (292)
..+-...+++.|...|.+++...++.+++.+|...+......
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHH
Confidence 566666999999999999999999999999997776655443
No 121
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.73 E-value=4e-16 Score=136.13 Aligned_cols=230 Identities=17% Similarity=0.186 Sum_probs=155.4
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------cE
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------NF 94 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-------~~ 94 (292)
.....+.++|++++|+++.+..|...+..| ...+++|.|++|||||++++.+++.+.. +|
T Consensus 7 ~~~~~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf 73 (350)
T CHL00081 7 KKKERPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPF 73 (350)
T ss_pred hhccCCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCC
Confidence 334566789999999999999999998775 2347999999999999999999877632 22
Q ss_pred EEEecc-------chhcc-------------------ccChHHHH------HHHHHHHh---------hhCCCEEEEEcc
Q 022768 95 LKVVSS-------AIIDK-------------------YIGESARL------IREMFGYA---------RDHQPCIIFMDE 133 (292)
Q Consensus 95 ~~~~~~-------~~~~~-------------------~~~~~~~~------~~~~~~~~---------~~~~~~il~lDe 133 (292)
. .... ..... ..+.+... +...+... .....++|++||
T Consensus 74 ~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDE 152 (350)
T CHL00081 74 N-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDE 152 (350)
T ss_pred C-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecC
Confidence 1 0000 00000 00111111 11111111 123457999999
Q ss_pred cccccCCcCCCCCcchHHHHHHHHHHHHHhh------C--CCCCCCeEEEEEeCCCC-CCChhhcCCCCcceEEEccCCC
Q 022768 134 IDAIGGRRFSEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLPN 204 (292)
Q Consensus 134 ~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~--~~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~~i~l~~p~ 204 (292)
++.+ +...+..|.+.+.... + .....++++|+|.|..+ .+++.+.+ ||...+.+.+|+
T Consensus 153 InrL-----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~ 219 (350)
T CHL00081 153 VNLL-----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVK 219 (350)
T ss_pred hHhC-----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCC
Confidence 9999 8888999988886521 1 11234677888777654 58899998 999999999997
Q ss_pred -HHHHHHHHHHHHcCc--cC--------CCCCCH-----------------------HHHHHHcCCCCHHHHHHHHHHHH
Q 022768 205 -EQSRMEILKIHAAGI--AK--------HGEIDY-----------------------EAVVKLAEGFNGADLRNVCTEAG 250 (292)
Q Consensus 205 -~~~r~~i~~~~~~~~--~~--------~~~~~~-----------------------~~l~~~~~g~~~~di~~l~~~a~ 250 (292)
.+.+.+|++...... .. ...... ..++..+..-++|--..+++.|.
T Consensus 220 ~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raAr 299 (350)
T CHL00081 220 DPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAK 299 (350)
T ss_pred ChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 589999988753210 00 000111 11222333346788889999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 251 MSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 251 ~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
.+|..+++..|+.+|+..+...+-.+..
T Consensus 300 A~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 300 ALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887665
No 122
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=6.3e-16 Score=145.19 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=142.6
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------- 93 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------- 93 (292)
..+..++|.+|++++|++++++.|...+..- ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~ 73 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGE 73 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 4467889999999999999999999998652 345669999999999999999999988642
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
++.++... ......++.+...+.. ....|++|||+|.+ ...
T Consensus 74 ~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~ 136 (614)
T PRK14971 74 ACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQA 136 (614)
T ss_pred CCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHH
Confidence 11111110 0113344455444332 34579999999999 555
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC-CCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~-~~~~~l 230 (292)
.+..|...++. +...+++|++++....+.+.+++ |+ ..+.|.+++.++....++..+....+.-+ ..+..+
T Consensus 137 a~naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 137 AFNAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 66666666553 33567788888888899999998 77 67999999999999888887765544322 235667
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
+..+.| +.+++...++.+..++ +.. |+.+++.+.
T Consensus 209 a~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 209 AQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 777766 6666666666654433 211 555554443
No 123
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.71 E-value=2.8e-16 Score=129.97 Aligned_cols=200 Identities=21% Similarity=0.283 Sum_probs=124.8
Q ss_pred CCCcccccc-c--cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 022768 27 GNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVV 98 (292)
Q Consensus 27 ~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~~ 98 (292)
|..+|++.+ | ++.+...++.....+ -.....++|+||+|+|||||++++++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~-----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP-----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST-----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC-----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 567899975 5 344555555554442 1123468999999999999999999875 55688888
Q ss_pred ccchhccccChHHH-HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEE
Q 022768 99 SSAIIDKYIGESAR-LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (292)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t 177 (292)
..++...+...... .+........ ...+|+|||+|.+.+ ....+..+..+++.... .++.+|+.+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~---~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIE---SGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHH---TTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHHHh---hCCeEEEEe
Confidence 87776543322211 1122222222 347999999999843 45678888888887653 134444444
Q ss_pred eCCCCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCH---HHHHHHcCCCCHHHHHHHHHHHHH
Q 022768 178 TNRPDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY---EAVVKLAEGFNGADLRNVCTEAGM 251 (292)
Q Consensus 178 ~~~~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~---~~l~~~~~g~~~~di~~l~~~a~~ 251 (292)
...|.. +.+.+.++...+..+.+.+|+.+.|..+++.++...... ++. +-|+....+ +.+++..+++....
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 444544 567888843456689999999999999999988765444 333 344455443 88889888888776
Q ss_pred HHH
Q 022768 252 SAI 254 (292)
Q Consensus 252 ~a~ 254 (292)
++.
T Consensus 215 ~~~ 217 (219)
T PF00308_consen 215 YAQ 217 (219)
T ss_dssp HHH
T ss_pred Hhh
Confidence 653
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=9.2e-16 Score=149.55 Aligned_cols=205 Identities=23% Similarity=0.331 Sum_probs=149.7
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEE
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFL 95 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~ 95 (292)
...-.++.++|+++.++++.+.+.. ....+++|+||||+|||++++.+|..+ +.+++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3445678999999999999998765 345689999999999999999999876 36788
Q ss_pred EEeccchh--ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 96 KVVSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
.++...+. ..+.|+.+..++.++..+....+.||||||+|.+.+..+... .......|...+. .+.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g---~~~~a~lLkp~l~-------rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG---AIDAANILKPALA-------RGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC---cccHHHHhHHHHh-------CCCcE
Confidence 88887765 456788899999999998887889999999999976543211 1223333443333 25788
Q ss_pred EEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc----cCC-CCCCHHHHHHHcCCC-----C
Q 022768 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI----AKH-GEIDYEAVVKLAEGF-----N 238 (292)
Q Consensus 174 vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~----~~~-~~~~~~~l~~~~~g~-----~ 238 (292)
+|++|+..+ ..++.+.+ || ..+.++.|+.++...|++.....+ ... .+-.+..+...+.+| -
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 999988653 46788888 88 568999999999988887554321 111 122245556666665 4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022768 239 GADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~ 256 (292)
|.....++++|.......
T Consensus 387 Pdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 387 PDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 667788889888766554
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.71 E-value=7.7e-16 Score=148.13 Aligned_cols=220 Identities=19% Similarity=0.259 Sum_probs=142.1
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc--------
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-------- 104 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-------- 104 (292)
+++|++++|+++.+++..... .+...+..++|+||||+|||++++.+|+.++.+++.++.....+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 389999999999998874311 11234667999999999999999999999999999988766432
Q ss_pred -cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh----------hCCCCCCCeE
Q 022768 105 -KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL----------DGFDQLGKVK 173 (292)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~ 173 (292)
.+.|.....+...+..+.... .|++|||+|.+.... ......+|+++++.- ......++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 122332223333333333333 489999999984321 112346677766531 1112346899
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-----c---CCCCCCHHHHHHHcCCCC----HHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-----A---KHGEIDYEAVVKLAEGFN----GAD 241 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-----~---~~~~~~~~~l~~~~~g~~----~~d 241 (292)
+|+|+|.. .+++++++ || ..+.+..++.++..+|++.++... . ..-.++-+.+..+..+|+ .|.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999887 59999999 99 678999999999999999887411 0 111233344444434443 355
Q ss_pred HHHHHHHHHHHHHHh----cC---CcccHHHHHHHHH
Q 022768 242 LRNVCTEAGMSAIRA----ER---DYVIHEDFMKAVR 271 (292)
Q Consensus 242 i~~l~~~a~~~a~~~----~~---~~i~~~~~~~a~~ 271 (292)
+...++.....+..+ +. -.|+.+++.+.+.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 554444444433332 21 2577777776665
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=8.9e-16 Score=139.64 Aligned_cols=192 Identities=14% Similarity=0.221 Sum_probs=133.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEeccchhccccChHHH---HHHHHHHHhhhCCCEEEEEccccccc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKYIGESAR---LIREMFGYARDHQPCIIFMDEIDAIG 138 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~il~lDe~d~l~ 138 (292)
.+++|+|++|+|||||++++++.+ +..++++++.++...+...... .+...... .....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999965 4567888877766544333221 11111111 2345799999999883
Q ss_pred CCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC-CC---CCChhhcCCCCcceEEEccCCCHHHHHHHHHH
Q 022768 139 GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-PD---VLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (292)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~-~~---~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~ 214 (292)
+ ....++.+..+++..... ++ .+|+|++. |. .+.+++.++...+.++.+.+|+.++|.++++.
T Consensus 220 ~---------k~~~~e~lf~l~N~~~~~---~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 220 Y---------KEKTNEIFFTIFNNFIEN---DK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred C---------CHHHHHHHHHHHHHHHHc---CC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 2 345677788888776532 22 36666654 33 35688888444467889999999999999999
Q ss_pred HHcCccCCCCCC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHh
Q 022768 215 HAAGIAKHGEID---YEAVVKLAEGFNGADLRNVCTEAGMSAIRAE-RDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 215 ~~~~~~~~~~~~---~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~-~~~i~~~~~~~a~~~~~ 274 (292)
.+........++ ++.++..+.| ++|.+..++..+...+.... ...|+.+.+.++++++.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 887543211233 3445556665 88899999999887776653 25799999999998864
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.70 E-value=3.4e-15 Score=124.96 Aligned_cols=182 Identities=15% Similarity=0.242 Sum_probs=119.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~ 142 (292)
...++|+||+|+|||||++++++++ +..+++++..++... ...+....... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcC---
Confidence 3679999999999999999999765 567777777665432 11222233333 5899999998733
Q ss_pred CCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc
Q 022768 143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (292)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~ 219 (292)
....+..+.++++.... .++.++++++..+.. ..++++++...+..+.+.+|+.+++..+++.++...
T Consensus 112 ------~~~~~~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 112 ------KADWEEALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred ------ChHHHHHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 23456678888876532 234444444444433 368888833336788999999999999999665543
Q ss_pred cCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 220 AKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 220 ~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
... .+-..+-++....+ +.+.+..+++.....+...+ ..||..-+++++.
T Consensus 183 ~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 183 GLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 222 12223445555554 77888888888876554444 4599998888764
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=1.7e-15 Score=148.04 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=150.4
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------C
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------D 91 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~ 91 (292)
+.....+-.++.++|+++.++++...+.. ....+++|+||||+|||++++.++..+ +
T Consensus 163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 163 LTERAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred HHHHhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 44455677889999999999999888755 335678999999999999999999886 5
Q ss_pred CcEEEEeccchh--ccccChHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 92 ANFLKVVSSAII--DKYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
.+++.++...+. ..+.++.+..++.++..+... .+.||||||+|.+.+..... ........|...+ .
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~l-------~ 299 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPAL-------A 299 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchhh-------h
Confidence 567777766654 356677888888999887653 57899999999997532111 1122223332222 3
Q ss_pred CCCeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCC-----CHHHHHHHcCCC-
Q 022768 169 LGKVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI-----DYEAVVKLAEGF- 237 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~-----~~~~l~~~~~g~- 237 (292)
.+.+.+|++|+..+ ..++++.+ || ..+.++.|+.+++..|++.....+.....+ .+...+.++.+|
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 36788999988753 47899998 99 568999999999999999776654333222 234445556555
Q ss_pred ----CHHHHHHHHHHHHHHHHHh
Q 022768 238 ----NGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 238 ----~~~di~~l~~~a~~~a~~~ 256 (292)
-|.-...++++|...+...
T Consensus 377 ~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 377 TDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred cccCCchHHHHHHHHHHHHHHhh
Confidence 4677888999988766543
No 129
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.69 E-value=1.1e-15 Score=130.03 Aligned_cols=192 Identities=21% Similarity=0.294 Sum_probs=127.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc--cccCh----HHH-HHHH-------------------HH
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID--KYIGE----SAR-LIRE-------------------MF 118 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~--~~~~~----~~~-~~~~-------------------~~ 118 (292)
.+.+++|+||||||||++|+++++.++.+++.+++..-.. ...|. ... .... .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3678999999999999999999999999999998764221 11111 000 0000 01
Q ss_pred HHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh----C-------CCCCCCeEEEEEeCCCC-----
Q 022768 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD----G-------FDQLGKVKMIMATNRPD----- 182 (292)
Q Consensus 119 ~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-------~~~~~~~~vi~t~~~~~----- 182 (292)
..+. ..+.+|+|||++.+ +.+.+..|..+++... + +..++.+.+|+|+|...
T Consensus 100 ~~A~-~~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 100 TLAV-REGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH-HcCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 1111 23469999999998 7888888888886421 0 01234678999999752
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHH---HH----cCCCCHHHHHHHHHHHHHHHHH
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV---KL----AEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~---~~----~~g~~~~di~~l~~~a~~~a~~ 255 (292)
.+++++.+ || ..+.+++|+.++..+|++.+.. . ... ..+.+. .. .....++ ++.++.-+...+..
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-~--~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-V--AED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQ 239 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-C--CHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHc
Confidence 46788888 88 7889999999999999998753 1 111 111111 11 1112332 66666666666666
Q ss_pred hcCCcccHHHHHHHHHHHhhh
Q 022768 256 AERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 256 ~~~~~i~~~~~~~a~~~~~~~ 276 (292)
..+..++.+|+.+.+..+-.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 240 DIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCCCcHHHHHHHHHHhcc
Confidence 667899999999998887653
No 130
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.69 E-value=2e-15 Score=131.75 Aligned_cols=221 Identities=19% Similarity=0.216 Sum_probs=146.9
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------CcEE-------
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-------ANFL------- 95 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~-------~~~~------- 95 (292)
+|..++|+++.+..|.-.+..+ ...+++|.|++|+||||++++++..+. +++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 6899999999999998877653 245799999999999999999998772 2111
Q ss_pred -EE-eccc----------------hhc--------cccChHHHHHHHHHH---------HhhhCCCEEEEEcccccccCC
Q 022768 96 -KV-VSSA----------------IID--------KYIGESARLIREMFG---------YARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 96 -~~-~~~~----------------~~~--------~~~~~~~~~~~~~~~---------~~~~~~~~il~lDe~d~l~~~ 140 (292)
.+ +|.. +.+ ...|.. .+...+. .......++|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL--- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC---
Confidence 00 0000 000 111110 0111100 011134579999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhh------C--CCCCCCeEEEEEeCCCC-CCChhhcCCCCcceEEEccCCCH-HHHHH
Q 022768 141 RFSEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLPNE-QSRME 210 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~~------~--~~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~~i~l~~p~~-~~r~~ 210 (292)
+...+..|.+.+.... + .....++++|+|.|..+ .+++.+.+ ||...+.+++|+. +++.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 8888898988886531 0 01223677888877654 68899998 9999999999876 88888
Q ss_pred HHHHHHcCc----c----CC-----------------CC--CC------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 022768 211 ILKIHAAGI----A----KH-----------------GE--ID------YEAVVKLAEGFNGADLRNVCTEAGMSAIRAE 257 (292)
Q Consensus 211 i~~~~~~~~----~----~~-----------------~~--~~------~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~ 257 (292)
|++...... . .. .. ++ +..++..+..-++|-...+++.|...|..++
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 888743210 0 00 00 11 1122233333367788899999999999999
Q ss_pred CCcccHHHHHHHHHHHhhhhh
Q 022768 258 RDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 258 ~~~i~~~~~~~a~~~~~~~~~ 278 (292)
+..|+.+|+..+..-+-.+..
T Consensus 294 R~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999988877654
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.68 E-value=2.2e-15 Score=142.02 Aligned_cols=225 Identities=21% Similarity=0.297 Sum_probs=147.1
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--------
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------- 90 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-------- 90 (292)
.+.+....+|.+|++++|++..++.+...+.. ..+.+++|+||+||||||+++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 34555677899999999999999988776643 235579999999999999999998755
Q ss_pred --CCcEEEEeccchhcc-------ccChHHH----HHHHHHHH----------hhhCCCEEEEEcccccccCCcCCCCCc
Q 022768 91 --DANFLKVVSSAIIDK-------YIGESAR----LIREMFGY----------ARDHQPCIIFMDEIDAIGGRRFSEGTS 147 (292)
Q Consensus 91 --~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~----------~~~~~~~il~lDe~d~l~~~~~~~~~~ 147 (292)
+.+++.+++..+... ..+.... .....+.. ......++|||||++.|
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------- 277 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------- 277 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC----------
Confidence 346788887654210 0111000 00000110 11234579999999999
Q ss_pred chHHHHHHHHHHHHHhhC-----------------------CCCCCCeEEEEE-eCCCCCCChhhcCCCCcceEEEccCC
Q 022768 148 ADREIQRTLMELLNQLDG-----------------------FDQLGKVKMIMA-TNRPDVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~-----------------------~~~~~~~~vi~t-~~~~~~l~~~l~~~~r~~~~i~l~~p 203 (292)
+...+..|..+++.... .....++++|++ ++.++.+++++++ || ..+.++++
T Consensus 278 -d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~-~~i~~~pl 353 (615)
T TIGR02903 278 -DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RC-AEVFFEPL 353 (615)
T ss_pred -CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ce-eEEEeCCC
Confidence 88888888888865320 001123555554 4567789999998 88 46789999
Q ss_pred CHHHHHHHHHHHHcCccCCCCCCH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------CCcccHHHHHHHHHH
Q 022768 204 NEQSRMEILKIHAAGIAKHGEIDY---EAVVKLAEGFNGADLRNVCTEAGMSAIRAE--------RDYVIHEDFMKAVRK 272 (292)
Q Consensus 204 ~~~~r~~i~~~~~~~~~~~~~~~~---~~l~~~~~g~~~~di~~l~~~a~~~a~~~~--------~~~i~~~~~~~a~~~ 272 (292)
+.++...|++..+...... ++. +.+...+ +.++.....+..+..++..+. ...|+.+|+.++++.
T Consensus 354 s~edi~~Il~~~a~~~~v~--ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 354 TPEDIALIVLNAAEKINVH--LAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9999999999988754322 222 3333332 245666666666665543221 236899999999876
Q ss_pred Hh
Q 022768 273 LN 274 (292)
Q Consensus 273 ~~ 274 (292)
-.
T Consensus 430 ~r 431 (615)
T TIGR02903 430 SR 431 (615)
T ss_pred Cc
Confidence 43
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=8.9e-16 Score=149.59 Aligned_cols=172 Identities=23% Similarity=0.353 Sum_probs=130.7
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------C
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------D 91 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~ 91 (292)
+.....+-.++.++|+++.++++.+.+.+ ....+++|+||||+|||++++.++..+ +
T Consensus 168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 33455667889999999999999888765 335579999999999999999999987 5
Q ss_pred CcEEEEeccchh--ccccChHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 92 ANFLKVVSSAII--DKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
.+++.++...+. ..+.|+.+..++.++..... ..+.||||||+|.+.+...+. ........|...+ .
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l-------~ 304 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL-------A 304 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchh-------h
Confidence 677888777765 34667888889999987654 467899999999997543221 1222333443333 3
Q ss_pred CCCeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc
Q 022768 169 LGKVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~ 219 (292)
.+.+.+|++|+..+ +.++++.+ ||. .|.++.|+.+++..+++.....+
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 36889999998765 47899998 995 68899999999999998776544
No 133
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=6.2e-15 Score=133.74 Aligned_cols=223 Identities=17% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCCCcccccc-ccHHH--HHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 26 PGNVSYSAVG-GLSDQ--IRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 26 ~~~~~~~~l~-g~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
-|..+|++.+ |.... ...+..+...+-. . +-....+++|+||+|+|||||++++++++ +..++++..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~-~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------G-KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------c-cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 3567888866 54333 3444444332100 0 00123569999999999999999999876 577888887
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
..+...............|.... ....+|+|||++.+.+ ....++.+..+++.+.. .+. .+|+|++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~~---~~k-~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLHT---EGK-LIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHHH---CCC-cEEEecC
Confidence 66543322111111111232222 3457999999998843 23455666677665432 123 3555555
Q ss_pred C-CC---CCChhhcCCCCc--ceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHH---HHcCCCCHHHHHHHHHHHH
Q 022768 180 R-PD---VLDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV---KLAEGFNGADLRNVCTEAG 250 (292)
Q Consensus 180 ~-~~---~l~~~l~~~~r~--~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~---~~~~g~~~~di~~l~~~a~ 250 (292)
. |. .+.+++++ || +..+.+.+|+.+++..+++..+..... .++.+.+. ....+ +.+.+..++....
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~--~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI--RIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 4 43 46688888 66 588999999999999999998876443 24444444 44443 5666666666664
Q ss_pred HH-HHHh-cCCcccHHHHHHHHHHHh
Q 022768 251 MS-AIRA-ERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 251 ~~-a~~~-~~~~i~~~~~~~a~~~~~ 274 (292)
.. |+.. ....++.+++.++++++.
T Consensus 319 ~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 319 KRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 21 3332 224699999999998763
No 134
>PRK06620 hypothetical protein; Validated
Probab=99.67 E-value=5.9e-15 Score=121.54 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=123.7
Q ss_pred CCCccccccc-c--HHHHHHHHHHhhcccCChHHHHhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 27 GNVSYSAVGG-L--SDQIRELRESIELPLMNPELFLRVGIKP-PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 27 ~~~~~~~l~g-~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
+..+|++++- . ..+...+..+...+ +..+ ...++|+||+|+||||+++++++..+..++. ....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4567787543 3 34556665554321 1222 3679999999999999999999987643221 1000
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
....+ ....+|+|||+|.+ .. ..+..+++.+.+ .++.++++++..|.
T Consensus 79 -----------~~~~~-----~~~d~lliDdi~~~-----------~~---~~lf~l~N~~~e---~g~~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEIL-----EKYNAFIIEDIENW-----------QE---PALLHIFNIINE---KQKYLLLTSSDKSR 125 (214)
T ss_pred -----------chhHH-----hcCCEEEEeccccc-----------hH---HHHHHHHHHHHh---cCCEEEEEcCCCcc
Confidence 00111 12268999999865 21 356666666543 24555555554444
Q ss_pred C--CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 022768 183 V--LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERD 259 (292)
Q Consensus 183 ~--l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~ 259 (292)
. + ++++++...+.++.+.+|+.+.+..+++..+...... .+-..+.|+....+ +.+.+..+++.....+...+ .
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~ 202 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-R 202 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-C
Confidence 3 5 7888843345588999999999999998887644332 22234556666665 77888888888665555544 4
Q ss_pred cccHHHHHHHH
Q 022768 260 YVIHEDFMKAV 270 (292)
Q Consensus 260 ~i~~~~~~~a~ 270 (292)
.||.+.+++++
T Consensus 203 ~it~~~~~~~l 213 (214)
T PRK06620 203 KITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHh
Confidence 69999888875
No 135
>PRK09087 hypothetical protein; Validated
Probab=99.66 E-value=4.7e-15 Score=123.14 Aligned_cols=201 Identities=17% Similarity=0.143 Sum_probs=127.3
Q ss_pred CCCCCccccccc---cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 25 DPGNVSYSAVGG---LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 25 ~~~~~~~~~l~g---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
..+..+|++.+. +..+...+.+... ..++.++|+||+|+|||||++++++..+..++ +...
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~~~--------------~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~ 77 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHWPN--------------WPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNE 77 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhccc--------------CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHH
Confidence 345568999874 3334453333211 12445999999999999999999988654433 3222
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC-C
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN-R 180 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~-~ 180 (292)
+.. ..+..... .+|+|||++.+. ..+..+.++++..... ++. +|+|++ .
T Consensus 78 ~~~-----------~~~~~~~~---~~l~iDDi~~~~------------~~~~~lf~l~n~~~~~---g~~-ilits~~~ 127 (226)
T PRK09087 78 IGS-----------DAANAAAE---GPVLIEDIDAGG------------FDETGLFHLINSVRQA---GTS-LLMTSRLW 127 (226)
T ss_pred cch-----------HHHHhhhc---CeEEEECCCCCC------------CCHHHHHHHHHHHHhC---CCe-EEEECCCC
Confidence 211 11111111 489999999761 1134577777665431 233 455444 3
Q ss_pred CCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 022768 181 PDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 181 ~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
+.. ..++++++...+.++.+.+|+.+++.++++.++...... .+..++.|+....+ +.+.+..++......+...
T Consensus 128 p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~ 206 (226)
T PRK09087 128 PSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER 206 (226)
T ss_pred hHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh
Confidence 432 357888844456889999999999999999998764332 22224555555554 6666777777777667665
Q ss_pred cCCcccHHHHHHHHHHH
Q 022768 257 ERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 257 ~~~~i~~~~~~~a~~~~ 273 (292)
++ .+|...++++++.+
T Consensus 207 ~~-~it~~~~~~~l~~~ 222 (226)
T PRK09087 207 KS-RITRALAAEVLNEM 222 (226)
T ss_pred CC-CCCHHHHHHHHHhh
Confidence 54 59999999999875
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=4.5e-15 Score=130.65 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=130.5
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------E
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------F 94 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~ 94 (292)
....+.|..+++|+|++++++.|...+..- .-++.+||+||+|+|||++++.+++.+.+. .
T Consensus 13 ~~~~~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~ 80 (351)
T PRK09112 13 LDGVPSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE 80 (351)
T ss_pred ccCCCCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc
Confidence 344578899999999999999999998752 335569999999999999999999988551 1
Q ss_pred EEE-ec--c---ch-----------hcc---c------cChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCC
Q 022768 95 LKV-VS--S---AI-----------IDK---Y------IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSE 144 (292)
Q Consensus 95 ~~~-~~--~---~~-----------~~~---~------~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~ 144 (292)
... .+ + .. ... . ..-..+.++.+..... .....|++|||+|.+
T Consensus 81 ~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------- 153 (351)
T PRK09112 81 TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------- 153 (351)
T ss_pred ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------
Confidence 000 00 0 00 000 0 0001233333333322 234579999999999
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC
Q 022768 145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE 224 (292)
Q Consensus 145 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~ 224 (292)
+......|+..+++ +..++.+|..++.++.+.+.+++ |+ ..+.|++|+.++..++++......... +
T Consensus 154 ----~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~ 220 (351)
T PRK09112 154 ----NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-G 220 (351)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-H
Confidence 77777777776654 33466667777888888899998 77 689999999999999988743221111 1
Q ss_pred CCHHHHHHHcCCCCHHHHHHHHHHH
Q 022768 225 IDYEAVVKLAEGFNGADLRNVCTEA 249 (292)
Q Consensus 225 ~~~~~l~~~~~g~~~~di~~l~~~a 249 (292)
.....+...+.| +++....++...
T Consensus 221 ~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 221 EITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 124556677776 777777666443
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.66 E-value=9.2e-15 Score=129.00 Aligned_cols=225 Identities=19% Similarity=0.240 Sum_probs=153.2
Q ss_pred cCCCCCccccccc-cH--HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEE
Q 022768 24 EDPGNVSYSAVGG-LS--DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFL 95 (292)
Q Consensus 24 ~~~~~~~~~~l~g-~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~ 95 (292)
...|.++|++++. .. -+......+-..+ | .+...++|+||.|+|||||++++++.. +..++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~ 147 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVV 147 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEE
Confidence 3456788888543 32 2333333333322 1 235679999999999999999999977 23577
Q ss_pred EEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEE
Q 022768 96 KVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (292)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 175 (292)
++....+...++......-..-|..-+ .-.+|+|||++.+.+ ....++.+..+++.+... ++ .+|
T Consensus 148 y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g---------k~~~qeefFh~FN~l~~~---~k-qIv 212 (408)
T COG0593 148 YLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG---------KERTQEEFFHTFNALLEN---GK-QIV 212 (408)
T ss_pred eccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC---------ChhHHHHHHHHHHHHHhc---CC-EEE
Confidence 777776655544443333334454444 336999999999854 345578888888876532 34 455
Q ss_pred EEe-CCCCC---CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC-CCHHHHHHHcCCCCHHHHHHHHHHHH
Q 022768 176 MAT-NRPDV---LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLAEGFNGADLRNVCTEAG 250 (292)
Q Consensus 176 ~t~-~~~~~---l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~-~~~~~l~~~~~g~~~~di~~l~~~a~ 250 (292)
.|+ ..|.. +.++++++.-++..+.+.+|+.+.|..+++..+......-+ --..-++..... +.+++..++....
T Consensus 213 ltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 213 LTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred EEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 555 44554 44889994445678899999999999999997765544422 223445555543 7889999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 251 MSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 251 ~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
.+|...++ .||.+.+.++++.+...
T Consensus 292 ~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 292 AFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 88877777 69999999999988765
No 138
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.65 E-value=1.4e-15 Score=130.68 Aligned_cols=139 Identities=16% Similarity=0.237 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc--ccChHHHHH----------HHHHHHhhhCCCEEEEEc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--YIGESARLI----------REMFGYARDHQPCIIFMD 132 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~il~lD 132 (292)
.+++++|.|+||+|||++++.+|+.++.+++.+++...... ..|.....+ ...+..+. ..+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 36789999999999999999999999999999998776544 333321111 01112222 245789999
Q ss_pred ccccccCCcCCCCCcchHHHHHHHHHHHHH---------hhCCCCCCCeEEEEEeCCCC------------CCChhhcCC
Q 022768 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQ---------LDGFDQLGKVKMIMATNRPD------------VLDPALLRP 191 (292)
Q Consensus 133 e~d~l~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~~~~~~~vi~t~~~~~------------~l~~~l~~~ 191 (292)
|+|.. ..+.+..|..+++. ...+.+.+.+.+|+|+|... .++.++++
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99988 77788888888763 12234556799999999743 36889998
Q ss_pred CCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 192 GRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 192 ~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
||..++.+.+|+.++..+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999887654
No 139
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=2e-14 Score=127.25 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=129.7
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE--------
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF-------- 94 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~-------- 94 (292)
...+.|.++++|+|++++++.|.+.+..- .-++.+||+||+|+||++++..+|+.+-+.-
T Consensus 10 ~~~~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~ 77 (365)
T PRK07471 10 EGAPHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAV 77 (365)
T ss_pred cCCCCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccc
Confidence 33478889999999999999999998762 4466799999999999999999999873311
Q ss_pred --------------------------EEEecc--chhccc-cChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCc
Q 022768 95 --------------------------LKVVSS--AIIDKY-IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRR 141 (292)
Q Consensus 95 --------------------------~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~ 141 (292)
+.+... +-.+.. ..-..+.++.+..... ...+.|++|||+|.+
T Consensus 78 ~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m---- 153 (365)
T PRK07471 78 PPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM---- 153 (365)
T ss_pred cccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc----
Confidence 001000 000000 0011233444444332 245789999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccC
Q 022768 142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK 221 (292)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~ 221 (292)
+......|+..+++ +.+++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++......
T Consensus 154 -------~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~--- 215 (365)
T PRK07471 154 -------NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD--- 215 (365)
T ss_pred -------CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---
Confidence 77777777776663 33567788889888888889988 77 78999999999999888875421
Q ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 222 HGEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 222 ~~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
..+.....+...+.| +++....++.
T Consensus 216 ~~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 216 LPDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 111112456677776 7766666654
No 140
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4e-14 Score=131.44 Aligned_cols=234 Identities=42% Similarity=0.642 Sum_probs=192.1
Q ss_pred cCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEE
Q 022768 52 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFM 131 (292)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l 131 (292)
+.....+..++..++.+++++||+|+|||.+++.++.. +.....++.......+.+.....+...+..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 44566788888999999999999999999999999999 65557777888888889999999999999999999999999
Q ss_pred cccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHH
Q 022768 132 DEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI 211 (292)
Q Consensus 132 De~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i 211 (292)
||+|.+.+.+..............+...+..+. ... +.+++.++.+..+++.++.+++|...+.+..|+...+.++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999888766333344444555555555444 333 7788888999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------CCcccHHHHHHHHHHHhhh---hhhchh
Q 022768 212 LKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAE------RDYVIHEDFMKAVRKLNEA---KKLESS 282 (292)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~------~~~i~~~~~~~a~~~~~~~---~~~~~~ 282 (292)
+...........+.+.+.++..+.|+.+.++..++..+...+..+. ...++.+++.++++.+.+. ......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED 238 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCC
Confidence 9988877766667889999999999999999999999998888885 3368999999999999774 112235
Q ss_pred hhhhhhcC
Q 022768 283 AHYNADFG 290 (292)
Q Consensus 283 ~~~~~~~~ 290 (292)
..|+++.|
T Consensus 239 v~~~digg 246 (494)
T COG0464 239 VTLDDIGG 246 (494)
T ss_pred cceehhhc
Confidence 56666654
No 141
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.62 E-value=5.3e-14 Score=113.62 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=139.7
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
-+.++++.+.+|+|.+.+++.|.+....+..+ .+..+||++|..|||||+++|++.+++ +..+++++-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 35677899999999999999999998887554 567889999999999999999999988 445666665
Q ss_pred cchhccccChHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe
Q 022768 100 SAIIDKYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~ 178 (292)
.++.. +..++...+.. ..-|||.||+- .+......+.|...++---+ ..+.+|++.+|+
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd~~yK~LKs~LeG~ve-~rP~NVl~YATS 181 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLS----------FEEGDDAYKALKSALEGGVE-GRPANVLFYATS 181 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCC----------CCCCchHHHHHHHHhcCCcc-cCCCeEEEEEec
Confidence 55432 33555555543 24688999972 22344556667676654322 233489999999
Q ss_pred CCCCCCChh--------------------hcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC---CCHHHHHHH--
Q 022768 179 NRPDVLDPA--------------------LLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE---IDYEAVVKL-- 233 (292)
Q Consensus 179 ~~~~~l~~~--------------------l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~---~~~~~l~~~-- 233 (292)
|..+.++.. +.-+.||+..+.|.+++.++...++..++....++-. ++.+.+...
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 987654421 1223499999999999999999999999986655532 223333332
Q ss_pred cCCCCHHHHHHHHHHH
Q 022768 234 AEGFNGADLRNVCTEA 249 (292)
Q Consensus 234 ~~g~~~~di~~l~~~a 249 (292)
-.|.|++-..|.++..
T Consensus 262 rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 262 RGGRSGRVAWQFIRDL 277 (287)
T ss_pred cCCCccHhHHHHHHHH
Confidence 3466777777777653
No 142
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.62 E-value=8.4e-14 Score=119.29 Aligned_cols=193 Identities=17% Similarity=0.260 Sum_probs=120.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC-cEEEEe--ccch-----h----cc----ccCh-HHHHHHHHH----HHhhhC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDA-NFLKVV--SSAI-----I----DK----YIGE-SARLIREMF----GYARDH 124 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~-~~~~~~--~~~~-----~----~~----~~~~-~~~~~~~~~----~~~~~~ 124 (292)
+..++|+||+|+||||+++.+++.+.. .+..+. .... . .. ..+. ....+..+. ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346889999999999999999998763 222111 0000 0 00 0001 111111111 222345
Q ss_pred CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC--CCC----ChhhcCCCCcceEE
Q 022768 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP--DVL----DPALLRPGRLDRKI 198 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~--~~l----~~~l~~~~r~~~~i 198 (292)
.+.+|+|||+|.+ .......+..+.+... .....+.++++.... +.+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 5689999999988 4444444443332211 111233444544321 111 123444 677788
Q ss_pred EccCCCHHHHHHHHHHHHcCccCC-----CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 022768 199 EIPLPNEQSRMEILKIHAAGIAKH-----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 199 ~l~~p~~~~r~~i~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 273 (292)
.+++++.++..+++...+...... .+..++.+...+.| .++.+..++..+...|..++...|+.+++.+++..+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRG-IPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999999887643211 22345667888888 567899999999999999999999999999999987
Q ss_pred h
Q 022768 274 N 274 (292)
Q Consensus 274 ~ 274 (292)
+
T Consensus 267 ~ 267 (269)
T TIGR03015 267 D 267 (269)
T ss_pred h
Confidence 6
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=7.9e-14 Score=121.98 Aligned_cols=175 Identities=14% Similarity=0.226 Sum_probs=118.9
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--------EEEEeccc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--------FLKVVSSA 101 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--------~~~~~~~~ 101 (292)
+|++++|++.+++.+...+..- .-++.+||+||+|+|||++++.+++.+-+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 5899999999999999988652 345678999999999999999999987432 2222211
Q ss_pred hhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEE
Q 022768 102 IIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t 177 (292)
.+.. .....++.+...+. .....|++||++|.+ +......|...++. +++++.+|.+
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 1111 12233444444332 234579999999998 66666666666653 4467777778
Q ss_pred eCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHH
Q 022768 178 TNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLR 243 (292)
Q Consensus 178 ~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~ 243 (292)
|+.++.+.+.+++ |+ ..+.|++|+.++....+.....+. .......++..+.| +++.+.
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g-~~~~a~ 188 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDG-IPGKVE 188 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCC-CHHHHH
Confidence 8888999999999 77 689999999998887776654321 11223455666665 444443
No 144
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.58 E-value=1.5e-13 Score=123.62 Aligned_cols=218 Identities=17% Similarity=0.157 Sum_probs=135.5
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccc-hhccccC
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-IIDKYIG 108 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~-~~~~~~~ 108 (292)
..++|.+++++.+..++. .+.++||.||||+|||++|++++...+. ++....+.. ......|
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 347888888888877763 3778999999999999999999997753 333333221 1111222
Q ss_pred hH-HHHH--HHHHHHhh-h--CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-----CCCCCeEEEEE
Q 022768 109 ES-ARLI--REMFGYAR-D--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-----DQLGKVKMIMA 177 (292)
Q Consensus 109 ~~-~~~~--~~~~~~~~-~--~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~vi~t 177 (292)
.. .... ...|.... . ....+||+||++.+ +...+..|+..+++-... .+.+..+++++
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 11 0000 01111111 1 02248999999988 888999999988654311 11122344555
Q ss_pred eCCCCC---CChhhcCCCCcceEEEccCCC-HHHHHHHHHHHHc--CccC--CCCCCHHH--------------------
Q 022768 178 TNRPDV---LDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAA--GIAK--HGEIDYEA-------------------- 229 (292)
Q Consensus 178 ~~~~~~---l~~~l~~~~r~~~~i~l~~p~-~~~r~~i~~~~~~--~~~~--~~~~~~~~-------------------- 229 (292)
+|...+ ..+++.+ ||...+.+++|+ .++..+++..... .... ...++.+.
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ey 231 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFEL 231 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHH
Confidence 564322 2247777 898889999997 4565777765322 1111 11122111
Q ss_pred ---HHHH---cC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 230 ---VVKL---AE---GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 230 ---l~~~---~~---g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
|... +. ..|+|...++++.|.+.|+..++..|+.+|+. .+..+-+++.
T Consensus 232 I~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl 288 (498)
T PRK13531 232 IFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDA 288 (498)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCH
Confidence 2221 11 26899999999999999999999999999999 7777666544
No 145
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.58 E-value=1e-13 Score=122.22 Aligned_cols=244 Identities=22% Similarity=0.310 Sum_probs=154.9
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccC-h
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-E 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~-~ 109 (292)
.++|++++++.+...+...+........+. -.++.+++|+||||+|||++++++++.++.+++.++...+.. .+.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999888765433221111111 123578999999999999999999999999999999776542 3333 2
Q ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Q 022768 110 SARLIREMFGYA-------------------------------------------------------------------- 121 (292)
Q Consensus 110 ~~~~~~~~~~~~-------------------------------------------------------------------- 121 (292)
.+..++.++..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 222222221111
Q ss_pred -----------------------------------------------------------------------hhCCCEEEE
Q 022768 122 -----------------------------------------------------------------------RDHQPCIIF 130 (292)
Q Consensus 122 -----------------------------------------------------------------------~~~~~~il~ 130 (292)
.....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012457999
Q ss_pred EcccccccCCcCCCCC-cchHHHHHHHHHHHHHhh-----CCCCCCCeEEEEEe----CCCCCCChhhcCCCCcceEEEc
Q 022768 131 MDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLD-----GFDQLGKVKMIMAT----NRPDVLDPALLRPGRLDRKIEI 200 (292)
Q Consensus 131 lDe~d~l~~~~~~~~~-~~~~~~~~~l~~~l~~~~-----~~~~~~~~~vi~t~----~~~~~l~~~l~~~~r~~~~i~l 200 (292)
|||+|.++.+..+.+. -+....|..|+.+++.-. ..-...++.+|++. ..|+.+-|.+.. ||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 9999999976533332 344567888877776421 11233467777765 236667788887 99999999
Q ss_pred cCCCHHHHHHHHH----HHHcCc-------cCC---CCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhcC-
Q 022768 201 PLPNEQSRMEILK----IHAAGI-------AKH---GEIDYEAVVKLA-------EGFNGADLRNVCTEAGMSAIRAER- 258 (292)
Q Consensus 201 ~~p~~~~r~~i~~----~~~~~~-------~~~---~~~~~~~l~~~~-------~g~~~~di~~l~~~a~~~a~~~~~- 258 (292)
.+++.++...|+. ....++ .+. .+-.+..++... .+.-.|-++.++.....-+.....
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~ 410 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPD 410 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC
Confidence 9999999988773 111111 111 122244444443 355567788777777765544422
Q ss_pred -----CcccHHHHHHHHHHHhhhhh
Q 022768 259 -----DYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 259 -----~~i~~~~~~~a~~~~~~~~~ 278 (292)
-.|+.+.+.+.+..+....+
T Consensus 411 ~~~~~v~I~~~~V~~~l~~~~~~~D 435 (441)
T TIGR00390 411 LSGQNITIDADYVSKKLGALVADED 435 (441)
T ss_pred CCCCEEEECHHHHHhHHHHHHhcCC
Confidence 26788888888877765443
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.58 E-value=9e-14 Score=131.89 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=146.6
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID------------------ 91 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~------------------ 91 (292)
.|.+|+|+++++..|.-....+ ...++||.|++|+|||++++++++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 6889999999999988777653 224699999999999999999999882
Q ss_pred -----------------CcEEEEeccchhccccChHHHHHHHHHH---------HhhhCCCEEEEEcccccccCCcCCCC
Q 022768 92 -----------------ANFLKVVSSAIIDKYIGESARLIREMFG---------YARDHQPCIIFMDEIDAIGGRRFSEG 145 (292)
Q Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~il~lDe~d~l~~~~~~~~ 145 (292)
.+++.+.+........|... +...+. .......++|||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhC--------
Confidence 23444333222122222210 011110 011224479999999999
Q ss_pred CcchHHHHHHHHHHHHHhh--------CCCCCCCeEEEEEeCCC-CCCChhhcCCCCcceEEEccCCC-HHHHHHHHHHH
Q 022768 146 TSADREIQRTLMELLNQLD--------GFDQLGKVKMIMATNRP-DVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIH 215 (292)
Q Consensus 146 ~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~vi~t~~~~-~~l~~~l~~~~r~~~~i~l~~p~-~~~r~~i~~~~ 215 (292)
+...+..|...++... ......++.+|+|+|.. ..+++.+.+ ||...+.++.+. .+++.++++..
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 8888999998887531 01112368899988864 357888998 999889887764 56777777643
Q ss_pred HcCc-------------------------cCCC--CCC---HHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhcCCccc
Q 022768 216 AAGI-------------------------AKHG--EID---YEAVVKLA--EGF-NGADLRNVCTEAGMSAIRAERDYVI 262 (292)
Q Consensus 216 ~~~~-------------------------~~~~--~~~---~~~l~~~~--~g~-~~~di~~l~~~a~~~a~~~~~~~i~ 262 (292)
.... .... .++ .+.+.... .|. +.+-...+++.|...|..+++..|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~ 293 (633)
T TIGR02442 214 LAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVT 293 (633)
T ss_pred HhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 2200 0000 111 12222222 233 4667778999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 022768 263 HEDFMKAVRKLNEAKK 278 (292)
Q Consensus 263 ~~~~~~a~~~~~~~~~ 278 (292)
.+|+.+|+..+-.+..
T Consensus 294 ~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 294 AEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999999886544
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=2.2e-13 Score=118.42 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=127.6
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE---------------
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--------------- 94 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--------------- 94 (292)
.|++|+|++++++.|.+.+..- .-++.+||+||+|+||+++|.++++.+-+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5899999999999999998762 4467899999999999999999999873321
Q ss_pred ---EEEeccchh-ccc--------c-------C-hHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchH
Q 022768 95 ---LKVVSSAII-DKY--------I-------G-ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (292)
Q Consensus 95 ---~~~~~~~~~-~~~--------~-------~-~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~ 150 (292)
..+...... +.. . + -..+.++.+...+. .....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 111111000 000 0 0 01123344433332 245689999999999 67
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHH
Q 022768 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (292)
Q Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l 230 (292)
.....|+..+++ ++ +..+|.+++.++.+.+.++| |+ ..+.|++++.++..++++...... ..+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHH
Confidence 677777776654 22 45677788889999999999 77 889999999999998888764311 111224677
Q ss_pred HHHcCCCCHHHHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEA 249 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a 249 (292)
...+.| +++.+.++++..
T Consensus 208 ~~~a~G-s~~~al~~l~~~ 225 (314)
T PRK07399 208 LALAQG-SPGAAIANIEQL 225 (314)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 888887 887887777543
No 148
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=1.9e-13 Score=122.60 Aligned_cols=221 Identities=21% Similarity=0.234 Sum_probs=132.5
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHh---cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccCh
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLR---VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE 109 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~~ 109 (292)
++|++++++.+...+...+........ -...+..++||+||||+|||++|+++++.++.+++.+++..+.. .+.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997776443222111000 00123578999999999999999999999999999999887643 34444
Q ss_pred H-HHHHHHHHHH----hhhCCCEEEEEcccccccCCcCCC---CCcchHHHHHHHHHHHHHhh--------CCCCCCCeE
Q 022768 110 S-ARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSE---GTSADREIQRTLMELLNQLD--------GFDQLGKVK 173 (292)
Q Consensus 110 ~-~~~~~~~~~~----~~~~~~~il~lDe~d~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~ 173 (292)
. ...+..++.. .....++||||||+|.+..+.... .+......|..|+.+++... ...+...++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 2 2333333332 123467899999999997652111 11123467888888886321 011222345
Q ss_pred EEEEeCCCC----------------------------------------------------CCChhhcCCCCcceEEEcc
Q 022768 174 MIMATNRPD----------------------------------------------------VLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 174 vi~t~~~~~----------------------------------------------------~l~~~l~~~~r~~~~i~l~ 201 (292)
+|.|+|... .+.|.+.. |++.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 555554400 02334444 888899999
Q ss_pred CCCHHHHHHHHHH----HHc-------CccCCCCCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 022768 202 LPNEQSRMEILKI----HAA-------GIAKHGEID---YEAVVKL--AEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 202 ~p~~~~r~~i~~~----~~~-------~~~~~~~~~---~~~l~~~--~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
+++.++..+|+.. ... ...+.-.++ .+.++.. ..++-.|.++.+++....-...+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999988872 222 111221222 2334443 23445677777777666655543
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.57 E-value=1.1e-13 Score=106.79 Aligned_cols=140 Identities=44% Similarity=0.708 Sum_probs=94.1
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHHH
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESAR 112 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~~ 112 (292)
|.+...+.+..++.. ..+.+++|+||+|+|||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566777777777644 246689999999999999999999998 7888888877655432211111
Q ss_pred H---HHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-CCCCCeEEEEEeCCCC--CCCh
Q 022768 113 L---IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPD--VLDP 186 (292)
Q Consensus 113 ~---~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~vi~t~~~~~--~l~~ 186 (292)
. ............+.+|+|||++.+ .......+...+...... ....++.+|++++... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 112223334456789999999887 444555566655554321 0135788899988776 6777
Q ss_pred hhcCCCCcceEEEcc
Q 022768 187 ALLRPGRLDRKIEIP 201 (292)
Q Consensus 187 ~l~~~~r~~~~i~l~ 201 (292)
.+.+ ||...+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7777 887666665
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=1.4e-13 Score=121.47 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=154.8
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccC-h
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-E 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~-~ 109 (292)
.++|++++++.+..++...++.......... ..+.+++|+||||+|||++++.+++.++.+++.+++..+.. .+.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999999888543222111101110 12578999999999999999999999999999999876653 3444 1
Q ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Q 022768 110 SARLIREMFGYA-------------------------------------------------------------------- 121 (292)
Q Consensus 110 ~~~~~~~~~~~~-------------------------------------------------------------------- 121 (292)
.+..++.++..+
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 122222221111
Q ss_pred ----------------------------------------------------------------------hhCCCEEEEE
Q 022768 122 ----------------------------------------------------------------------RDHQPCIIFM 131 (292)
Q Consensus 122 ----------------------------------------------------------------------~~~~~~il~l 131 (292)
.....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124579999
Q ss_pred cccccccCCcCCCC-CcchHHHHHHHHHHHHHhh-----CCCCCCCeEEEEEe----CCCCCCChhhcCCCCcceEEEcc
Q 022768 132 DEIDAIGGRRFSEG-TSADREIQRTLMELLNQLD-----GFDQLGKVKMIMAT----NRPDVLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 132 De~d~l~~~~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~vi~t~----~~~~~l~~~l~~~~r~~~~i~l~ 201 (292)
||+|.++.+....+ +-+....|..|+.+++.-. ..-...++.+|++. ..|+.+-|.|.. ||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997653322 2334567888877776421 11233467777765 335667788887 999999999
Q ss_pred CCCHHHHHHHHHH----HHcCc-------cCC---CCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhcC--
Q 022768 202 LPNEQSRMEILKI----HAAGI-------AKH---GEIDYEAVVKLA-------EGFNGADLRNVCTEAGMSAIRAER-- 258 (292)
Q Consensus 202 ~p~~~~r~~i~~~----~~~~~-------~~~---~~~~~~~l~~~~-------~g~~~~di~~l~~~a~~~a~~~~~-- 258 (292)
+++.++...|+.. ...++ .+. .+..+..++..+ .+.-.|-++.+++....-+.....
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~ 413 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDM 413 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCC
Confidence 9999999887741 22211 111 122344455443 344567788888777766543322
Q ss_pred ----CcccHHHHHHHHHHHhhhhh
Q 022768 259 ----DYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 259 ----~~i~~~~~~~a~~~~~~~~~ 278 (292)
-.|+.+.+.+.+..+....+
T Consensus 414 ~~~~v~I~~~~V~~~l~~l~~~~D 437 (443)
T PRK05201 414 SGETVTIDAAYVDEKLGDLVKDED 437 (443)
T ss_pred CCCEEEECHHHHHHHHHHHHhcCC
Confidence 26788888888877765444
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=2.1e-13 Score=130.58 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=117.4
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc-----cc
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-----YI 107 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~-----~~ 107 (292)
.++|++++++.|...+.....+. .. .-.|..++||+||||+|||.+|+.+|+.++.+++.+++.++... +.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 47999999999999987532110 00 01234569999999999999999999999999999998876431 11
Q ss_pred Ch----HHH-HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCCeEEEE
Q 022768 108 GE----SAR-LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLGKVKMIM 176 (292)
Q Consensus 108 ~~----~~~-~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~vi~ 176 (292)
|. ... .-..+....+....+||+|||+|.+ ..+.+..|+++++...-. ....++++|+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 11 000 0112223334455689999999999 788888888888753211 1123678999
Q ss_pred EeCCC-------------------------CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 177 ATNRP-------------------------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 177 t~~~~-------------------------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
|+|.. ..+.|.+.. |++.++.|++++.++..+|+...+.
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99832 114466666 8999999999999999998886654
No 152
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.56 E-value=2.8e-13 Score=119.25 Aligned_cols=215 Identities=25% Similarity=0.256 Sum_probs=138.8
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc--cChHH
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY--IGESA 111 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~--~~~~~ 111 (292)
++|.++++..+...+.. +.+++|.||||+|||++++.+|..++.+++++.+....... .|...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 77888888777776543 67899999999999999999999999999999988654321 12111
Q ss_pred HHHH----HHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh------C-CCCCCCeEEEE
Q 022768 112 RLIR----EMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------G-FDQLGKVKMIM 176 (292)
Q Consensus 112 ~~~~----~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~~~~~~vi~ 176 (292)
.... ..+..... ...+++++|||+.. ....+..|+..++... . ..-...+++++
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1110 00000000 00139999999988 8889999999998731 2 33445788888
Q ss_pred EeC-----CCCCCChhhcCCCCcceEEEccCC-CHHHHHHHHHHHHcCc------cCCCCCCHHH---------------
Q 022768 177 ATN-----RPDVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHAAGI------AKHGEIDYEA--------------- 229 (292)
Q Consensus 177 t~~-----~~~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~i~~~~~~~~------~~~~~~~~~~--------------- 229 (292)
|.| ....+++++++ ||...+.+++| +.++...+........ .....+....
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSD 237 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchH
Confidence 888 34568999999 99889999999 4444444444333201 1111111111
Q ss_pred --------HHHH-------cCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 230 --------VVKL-------AEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 230 --------l~~~-------~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
+... ..|.+++....++..+...|...++..+..+++.........+
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 238 EVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 1111 1133566667777777777777777788888877766665543
No 153
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.55 E-value=1.5e-13 Score=127.31 Aligned_cols=226 Identities=18% Similarity=0.157 Sum_probs=140.4
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE----eccchhccccCh
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV----VSSAIIDKYIGE 109 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~----~~~~~~~~~~~~ 109 (292)
+.|.+.++..+.-.+..-.. +.......+....++||+|+||+|||++++++++......+.. ++..+.......
T Consensus 205 i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 67777777776666543110 0000001123345899999999999999999999876543222 111111100000
Q ss_pred ---HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh------C--CCCCCCeEEEEEe
Q 022768 110 ---SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMAT 178 (292)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~--~~~~~~~~vi~t~ 178 (292)
....++ -+.......++++|||++.+ ....+..|.+.++.-. + ..-+.++.+|+|+
T Consensus 284 ~~~g~~~~~--~G~l~~A~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~ 350 (509)
T smart00350 284 PETREFTLE--GGALVLADNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAA 350 (509)
T ss_pred cCcceEEec--CccEEecCCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEe
Confidence 000000 00111234579999999999 7888888888886422 0 0112478899999
Q ss_pred CCCC-------------CCChhhcCCCCcceEE-EccCCCHHHHHHHHHHHHcCcc------------------------
Q 022768 179 NRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKIHAAGIA------------------------ 220 (292)
Q Consensus 179 ~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~i~~~~~~~~~------------------------ 220 (292)
|+.+ .+++.+++ ||+..+ ....|+.+...+|.++.+....
T Consensus 351 NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~ 428 (509)
T smart00350 351 NPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIA 428 (509)
T ss_pred CCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHH
Confidence 9753 48899999 997755 5588999988888877542110
Q ss_pred -----CCCCCCHHH---HH-----HH----------cCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 221 -----KHGEIDYEA---VV-----KL----------AEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 221 -----~~~~~~~~~---l~-----~~----------~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
....+.-+. +. .+ ..+.++|.+..+++-|.+.|..+.+..|+.+|+.+|++-+..
T Consensus 429 ~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 429 YAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 000111111 10 01 113488999999999999999999999999999999988764
No 154
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.55 E-value=5.6e-13 Score=122.58 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=141.6
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHH----hc-------------------CCCCCceEEEEcCCCChHH
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL----RV-------------------GIKPPKGVLLYGPPGTGKT 80 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~----~~-------------------~~~~~~~vll~G~~G~GKT 80 (292)
+.+.|..|.+|.|.+.+-+.++.++..- +.+.|. ++ +-++.+.+||+||||.|||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 4789999999999999999999887531 112222 11 2234556889999999999
Q ss_pred HHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHH
Q 022768 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (292)
Q Consensus 81 ~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (292)
|||+.+|+..|..++++|.++-.+ .......+..+..... ...|..|+|||||-- ......++
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~Vdvi 407 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAVDVI 407 (877)
T ss_pred HHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHHHHH
Confidence 999999999999999999887543 2223333333332222 156899999999754 56667777
Q ss_pred HHHHHHh--h--CCCC------------CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc
Q 022768 157 MELLNQL--D--GFDQ------------LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 220 (292)
Q Consensus 157 ~~~l~~~--~--~~~~------------~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~ 220 (292)
..++..- . +... .-.-.||+.||+.. .|+|+.-..|..++.|.+|......+=++..+....
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~ 485 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHREN 485 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhc
Confidence 7777621 1 1100 01234888999765 455554336889999999988766655555554333
Q ss_pred CC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 022768 221 KH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER 258 (292)
Q Consensus 221 ~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~ 258 (292)
.. ..-.+..|+.++++ ||+..++.....+....+
T Consensus 486 mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 486 MRADSKALNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred CCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 22 11234455555555 999999999988866433
No 155
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.55 E-value=2.9e-13 Score=124.16 Aligned_cols=216 Identities=19% Similarity=0.319 Sum_probs=135.4
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----cEEEEeccc-h
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSSA-I 102 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~----~~~~~~~~~-~ 102 (292)
...|+++.|++.+++.+.-.+ ..+.+++|.||||+|||++++.++..+.. ..+...... .
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 458999999999988776654 34678999999999999999999975522 111111100 0
Q ss_pred hcc-----------cc----ChHH-HHHHH----HHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 103 IDK-----------YI----GESA-RLIRE----MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 103 ~~~-----------~~----~~~~-~~~~~----~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
... +. ..+. ..+.. --........++|||||++.+ +...+..|.+.++.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~-----------~~~~~~~L~~~LE~ 321 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEF-----------KRSVLDALREPIED 321 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhC-----------CHHHHHHHHHHHHc
Confidence 000 00 0000 00000 001122334589999999998 78888888888864
Q ss_pred hh--------CCCCCCCeEEEEEeCCC------C-----------------CCChhhcCCCCcceEEEccCCCHHHH---
Q 022768 163 LD--------GFDQLGKVKMIMATNRP------D-----------------VLDPALLRPGRLDRKIEIPLPNEQSR--- 208 (292)
Q Consensus 163 ~~--------~~~~~~~~~vi~t~~~~------~-----------------~l~~~l~~~~r~~~~i~l~~p~~~~r--- 208 (292)
-. ......++.+|+++|.- . .++..+++ ||+..+.++.++..+.
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhcc
Confidence 32 11112478899999862 1 47778888 9999999987654321
Q ss_pred ----------HHHHHH------HHcCc---cCCCCCCHHHHHH----------------HcCCCCHHHHHHHHHHHHHHH
Q 022768 209 ----------MEILKI------HAAGI---AKHGEIDYEAVVK----------------LAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 209 ----------~~i~~~------~~~~~---~~~~~~~~~~l~~----------------~~~g~~~~di~~l~~~a~~~a 253 (292)
..+.+. ++.+. ..+..+....+.+ ...++|.|-...+++-|...|
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiA 479 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIA 479 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222221 11111 1122222222211 122578999999999999999
Q ss_pred HHhcCCcccHHHHHHHHH
Q 022768 254 IRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~ 271 (292)
..++...|+.+|+.+|+.
T Consensus 480 dL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 480 DLKEEKNISREHLAEAIE 497 (499)
T ss_pred hhcCCCCCCHHHHHHHHh
Confidence 999999999999999985
No 156
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.54 E-value=2.9e-13 Score=127.28 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=92.2
Q ss_pred CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh----CC------------CCCCCeEEEEEeCCC--CCCChh
Q 022768 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD----GF------------DQLGKVKMIMATNRP--DVLDPA 187 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~------------~~~~~~~vi~t~~~~--~~l~~~ 187 (292)
.++|+|||++.| ....+..|.+.++.-. +. .-.-++.+|+++|.. ..+++.
T Consensus 218 gGtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPA 286 (608)
T ss_pred CCEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHH
Confidence 368899999888 6778888888886532 00 011267788888864 578999
Q ss_pred hcCCCCcc---eEEEccC---CCHHHHHHHHHHHHcC---ccCCCCCCHHHHHHHcC------------CCCHHHHHHHH
Q 022768 188 LLRPGRLD---RKIEIPL---PNEQSRMEILKIHAAG---IAKHGEIDYEAVVKLAE------------GFNGADLRNVC 246 (292)
Q Consensus 188 l~~~~r~~---~~i~l~~---p~~~~r~~i~~~~~~~---~~~~~~~~~~~l~~~~~------------g~~~~di~~l~ 246 (292)
+++ ||. ..+.++. .+.+.+.++++..... ......++.+.+..+.. ..+.+++..++
T Consensus 287 l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 287 LRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLV 364 (608)
T ss_pred HHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 998 887 5565533 3456666555543332 11122444444433321 12579999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+.|...|..++...|+.+|+.+|++....
T Consensus 365 R~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 365 RAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 99988888888889999999999887764
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=3.8e-13 Score=125.91 Aligned_cols=227 Identities=15% Similarity=0.188 Sum_probs=133.7
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE-Eec
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-VVS 99 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~-~~~ 99 (292)
+..+.+.|.++++|+|.++.++.+..++.... ++..+++.++|+||+|+||||+++.+++.++..+.+ .+.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 45568999999999999999999998876531 123455669999999999999999999998765433 111
Q ss_pred c---chhcc------------ccChHHHHHHHHHHHhh----------hCCCEEEEEcccccccCCcCCCCCcchHHHHH
Q 022768 100 S---AIIDK------------YIGESARLIREMFGYAR----------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (292)
Q Consensus 100 ~---~~~~~------------~~~~~~~~~~~~~~~~~----------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (292)
. ...+. ........+..++..+. .....||+|||++.++.. ...
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~ 213 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTR 213 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHH
Confidence 1 00000 00112223333333332 124579999999887421 222
Q ss_pred HHHHHHH-HhhCCCCCCCeEEEEEeCC-CC--------------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC
Q 022768 155 TLMELLN-QLDGFDQLGKVKMIMATNR-PD--------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218 (292)
Q Consensus 155 ~l~~~l~-~~~~~~~~~~~~vi~t~~~-~~--------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~ 218 (292)
.+..++. ... ..+.+.+|++++. +. .+.+.+++..|+ .+|.|.+.+.....+.++..+..
T Consensus 214 ~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 214 ALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred HHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 3334443 111 1234445554442 21 133667754455 57899999999988888777764
Q ss_pred ccCC--CC--C-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------cCCcccHHHHHHHHH
Q 022768 219 IAKH--GE--I-DYEAVVKLAEGFNGADLRNVCTEAGMSAIRA-------ERDYVIHEDFMKAVR 271 (292)
Q Consensus 219 ~~~~--~~--~-~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~-------~~~~i~~~~~~~a~~ 271 (292)
.... .+ + +.+.+..+... +.||+|.++.....++... ....++..++..+..
T Consensus 290 E~~~~~~~~~~p~~~~l~~I~~~-s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 290 EAKKNGEKIKVPKKTSVELLCQG-CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred hhhccccccccCCHHHHHHHHHh-CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 2111 11 1 22334333332 4459999999888876542 122455555555543
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=5.8e-13 Score=128.64 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=117.9
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCC----CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc-
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGI----KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY- 106 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~- 106 (292)
..++|++++++.+.+.+... +.|+ .+..+++|+||+|+|||++|+++|+.++.+++.+++.++....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 35889999999998887653 1122 2334589999999999999999999999999999987764321
Q ss_pred ----cChH-----HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCC
Q 022768 107 ----IGES-----ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLGK 171 (292)
Q Consensus 107 ----~~~~-----~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~ 171 (292)
.|.. ......+...++....+||+|||+|.+ ....+..|+++++...-. ....+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 1110 001122333444566789999999998 788888888888753211 11236
Q ss_pred eEEEEEeCCCC-------------------------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 172 VKMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 172 ~~vi~t~~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
+++|+|+|... .+.|.+.. |++.++.|.+++.++..+|++..+.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 77899887632 13456665 8999999999999999999997775
No 159
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.7e-13 Score=125.54 Aligned_cols=222 Identities=23% Similarity=0.315 Sum_probs=155.2
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcE
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANF 94 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~ 94 (292)
....-.++.++|+++.++++.+.+.+. ..++-+++|+||+|||.++..+|.+. +..+
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 345567788999999999999998763 34567888999999999999999876 4456
Q ss_pred EEEeccchh--ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 95 LKVVSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
+.++...+. .++.|+.+..++.+...+....+.||||||+|.+.+.-+...+ .-+....|.-.+.. +.+
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLAR-------GeL 300 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALAR-------GEL 300 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHhc-------CCe
Confidence 777777665 4688999999999999999888899999999999764432221 22333344443332 567
Q ss_pred EEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCC-----CHHHHHHHc-----CCC
Q 022768 173 KMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI-----DYEAVVKLA-----EGF 237 (292)
Q Consensus 173 ~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~-----~~~~l~~~~-----~g~ 237 (292)
.+|++|...+ +-+++|.+ || ..|.+..|+.++...|++..-..+.....+ .+...+.++ +.+
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~ 377 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCC
Confidence 7888886533 35788888 99 888999999999999999766544333222 223333333 334
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 238 NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 238 ~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
-|.-...++++|..............+.+.+-+.
T Consensus 378 LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~ 411 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLEIDKPEELDELERELA 411 (786)
T ss_pred CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHH
Confidence 5556678888888766554333333333333333
No 160
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=8e-13 Score=118.01 Aligned_cols=221 Identities=20% Similarity=0.289 Sum_probs=133.6
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHh----cCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-ccc
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLR----VGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYI 107 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~----~~~-~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~ 107 (292)
++|++++++.+...+...+........ .++ ....++||+||||+|||++|+++|+.++.++..+++..+.. .+.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 799999999998877432222110000 001 12468999999999999999999999999999888776542 344
Q ss_pred ChH-HHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCC---CcchHHHHHHHHHHHHHhh--------CCCCCCC
Q 022768 108 GES-ARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEG---TSADREIQRTLMELLNQLD--------GFDQLGK 171 (292)
Q Consensus 108 ~~~-~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~--------~~~~~~~ 171 (292)
|.. ...+...+... ....+++|+|||+|.+..+....+ +......+..|+++++... ...+...
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 542 33333433322 234568999999999975432211 1122367777888774211 0112235
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCChhhcCCCCcceEEEcc
Q 022768 172 VKMIMATNRP---------------------------D-----------------------VLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 172 ~~vi~t~~~~---------------------------~-----------------------~l~~~l~~~~r~~~~i~l~ 201 (292)
+++|.|+|.. . .+.|.+.. |++.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 6777777651 0 02234444 888889999
Q ss_pred CCCHHHHHHHHHHH----HcCc-------cCCCCCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 022768 202 LPNEQSRMEILKIH----AAGI-------AKHGEID---YEAVVKL--AEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 202 ~p~~~~r~~i~~~~----~~~~-------~~~~~~~---~~~l~~~--~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
+++.++..+|+... ..++ .+.-.++ .+.++.. ...+-.|.++.+++....-+...
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999887642 2211 1111122 3334443 23455788888888777766554
No 161
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.51 E-value=1.6e-12 Score=108.09 Aligned_cols=132 Identities=24% Similarity=0.261 Sum_probs=99.3
Q ss_pred CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC-------------CCCCChhhcCC
Q 022768 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-------------PDVLDPALLRP 191 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~-------------~~~l~~~l~~~ 191 (292)
-|++|||||+|.| +-++-..|...+.. + -..++|+++|. |+.+++.+++
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalES-----~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALES-----P-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhcC-----C-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 5899999999998 66666666665542 1 23445665553 4568888988
Q ss_pred CCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 192 GRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 192 ~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
|. ..|...+++.++.++|++.+....... .+-.+..|+.+....+.+...+++..|...|...++..|..+|+.+..
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 77 667777788889999999888754443 333466677776667888999999999999999999999999999988
Q ss_pred HHHhhh
Q 022768 271 RKLNEA 276 (292)
Q Consensus 271 ~~~~~~ 276 (292)
.-+...
T Consensus 436 ~Lf~Da 441 (456)
T KOG1942|consen 436 ELFLDA 441 (456)
T ss_pred HHHHhc
Confidence 877654
No 162
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.51 E-value=7e-13 Score=116.62 Aligned_cols=147 Identities=21% Similarity=0.360 Sum_probs=104.6
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhcC-------------------
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK-GVLLYGPPGTGKTLLARAIASNID------------------- 91 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~vll~G~~G~GKT~l~~~la~~l~------------------- 91 (292)
++++|.+++..++..+.... .... .+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~ 68 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI 68 (325)
T ss_pred CCcccchhHHHHHHHHHHhc------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHH
Confidence 35788888888888887642 2233 499999999999999999999886
Q ss_pred -----CcEEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 92 -----ANFLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
..+++++..+..... .....++.+...... ....|++|||+|.+ ....+.++...+.+
T Consensus 69 ~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe 135 (325)
T COG0470 69 PAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE 135 (325)
T ss_pred hhcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc
Confidence 456667666654321 123334444433322 34579999999999 66666666666653
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI 211 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i 211 (292)
+..+..+|.+||.++.+-+.+++ |+ ..+.|++|+.......
T Consensus 136 -----p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 -----PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred -----CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 44678899999999999999999 77 7788888654444333
No 163
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.50 E-value=4e-13 Score=115.89 Aligned_cols=106 Identities=27% Similarity=0.276 Sum_probs=69.7
Q ss_pred CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC------------CCCCChhhcCCC
Q 022768 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR------------PDVLDPALLRPG 192 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~------------~~~l~~~l~~~~ 192 (292)
-|+||||||+|.| +-++-..|...++. . -..++|.+||+ |+.+|.++++
T Consensus 278 vpGVLFIDEvHmL-----------DiEcFsfLnralEs-----~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD-- 338 (398)
T PF06068_consen 278 VPGVLFIDEVHML-----------DIECFSFLNRALES-----E-LSPIIILATNRGITKIRGTDIISPHGIPLDLLD-- 338 (398)
T ss_dssp EE-EEEEESGGGS-----------BHHHHHHHHHHHTS-----T-T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--
T ss_pred ecceEEecchhhc-----------cHHHHHHHHHHhcC-----C-CCcEEEEecCceeeeccCccCcCCCCCCcchHh--
Confidence 3789999999999 88777777777653 1 24556666663 4578889998
Q ss_pred CcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 022768 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAG 250 (292)
Q Consensus 193 r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~ 250 (292)
|+ ..|...+++.++..+|++.++....+. .+-.++.|.......+.+...+++..|.
T Consensus 339 Rl-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 339 RL-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp TE-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred hc-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 88 888999999999999999888754333 2234566667766678888888887664
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.50 E-value=5.2e-13 Score=119.67 Aligned_cols=208 Identities=25% Similarity=0.305 Sum_probs=144.8
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK 105 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~ 105 (292)
..+..++|...+.+++.+.+... .....+|||+|++||||..+|+++.+.. +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 46788999999999999998775 4557789999999999999999999877 459999999987544
Q ss_pred ccChHHHHHHHHHHHhh---------------hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC--
Q 022768 106 YIGESARLIREMFGYAR---------------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ-- 168 (292)
Q Consensus 106 ~~~~~~~~~~~~~~~~~---------------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 168 (292)
...+ ++|...+ ....+.||||||..+ .-..|..|+.+++.-.-.+-
T Consensus 207 l~ES------ELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 207 LLES------ELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHH------HhhcccccCcCCcccccCcceeEcCCceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCC
Confidence 3222 4555433 245689999999998 88999999999986431111
Q ss_pred ----CCCeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHc----Cc-cCCCCCCHH
Q 022768 169 ----LGKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAA----GI-AKHGEIDYE 228 (292)
Q Consensus 169 ----~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~----~~-~~~~~~~~~ 228 (292)
.-++.||++||.. ...-++|.. |+ .++.+..|...+|.+ ++.+++. .. .....++.+
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 1157899998853 123333433 44 456777777777764 4444444 22 223567778
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 022768 229 AVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFM 267 (292)
Q Consensus 229 ~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~ 267 (292)
.+..+...-.||.+++|-+.+...++......|+.+++.
T Consensus 347 a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 347 ALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 888887755666777666666666666666566665543
No 165
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.49 E-value=2.9e-12 Score=105.71 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=126.9
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-cE--EE----
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-NF--LK---- 96 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-~~--~~---- 96 (292)
+.+.|-+++.+.+.++....++.+... ..-.|+++|||+|+||-|.+.++.+++.. .+ +.
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 467888999999999999999888652 12358999999999999999999988822 11 11
Q ss_pred --------------Eeccchhcc---ccCh-HHHHHHHHHHHhhh---------CCCEEEEEcccccccCCcCCCCCcch
Q 022768 97 --------------VVSSAIIDK---YIGE-SARLIREMFGYARD---------HQPCIIFMDEIDAIGGRRFSEGTSAD 149 (292)
Q Consensus 97 --------------~~~~~~~~~---~~~~-~~~~~~~~~~~~~~---------~~~~il~lDe~d~l~~~~~~~~~~~~ 149 (292)
+....+..- ..|. ....+++++....+ ..-.+++|.|+|.| .
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T 140 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------T 140 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------h
Confidence 111111100 1111 12223444443332 22369999999999 8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCC-CHH
Q 022768 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI-DYE 228 (292)
Q Consensus 150 ~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~-~~~ 228 (292)
.+.|.+|...++... +.+.+|..+|..+.+-+++++ |+ ..+.++.|+.++...++...+......-+. -..
T Consensus 141 ~dAQ~aLRRTMEkYs-----~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 141 RDAQHALRRTMEKYS-----SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred HHHHHHHHHHHHHHh-----cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 899999998887654 478899999999999999999 76 778999999999999999888755444222 234
Q ss_pred HHHHHcCC
Q 022768 229 AVVKLAEG 236 (292)
Q Consensus 229 ~l~~~~~g 236 (292)
.++..++|
T Consensus 213 rIa~kS~~ 220 (351)
T KOG2035|consen 213 RIAEKSNR 220 (351)
T ss_pred HHHHHhcc
Confidence 45555554
No 166
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.49 E-value=1.7e-12 Score=121.95 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=134.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccchhccccChHH--HHHHH-HHH----HhhhCCCEEEEEccccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGESA--RLIRE-MFG----YARDHQPCIIFMDEIDA 136 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~----~~~~~~~~il~lDe~d~ 136 (292)
-.+|||.|++|+|||++++++++.++. +|+.+......+...|... ..+.. .+. .......++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 357999999999999999999998764 5777765333333333321 00100 000 01113447999999999
Q ss_pred ccCCcCCCCCcchHHHHHHHHHHHHHhh------C--CCCCCCeEEEEEeCCCC---CCChhhcCCCCcceEEEccC-CC
Q 022768 137 IGGRRFSEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD---VLDPALLRPGRLDRKIEIPL-PN 204 (292)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~--~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~l~~-p~ 204 (292)
+ +...+..|.+.++... + .....++.+|+|+|..+ .+++.+.+ ||...+.+.. |+
T Consensus 96 l-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 L-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred C-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 9 8889999999887532 1 11123688899888765 68889998 9988887754 57
Q ss_pred HHHHHHHHHHHHcCcc-------------------CCC--CCC---HHHHHHH--cCCC-CHHHHHHHHHHHHHHHHHhc
Q 022768 205 EQSRMEILKIHAAGIA-------------------KHG--EID---YEAVVKL--AEGF-NGADLRNVCTEAGMSAIRAE 257 (292)
Q Consensus 205 ~~~r~~i~~~~~~~~~-------------------~~~--~~~---~~~l~~~--~~g~-~~~di~~l~~~a~~~a~~~~ 257 (292)
.++|.+|++....... ... .+. +..+... ..|. +.+--..+++.|...|..++
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 7788888877542110 000 011 1112221 1233 36777789999999999999
Q ss_pred CCcccHHHHHHHHHHHhhhhh
Q 022768 258 RDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 258 ~~~i~~~~~~~a~~~~~~~~~ 278 (292)
+.+|+.+|+..|..-+-.+..
T Consensus 243 r~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 243 RTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred CCCCCHHHHHHHHHHHhhhhc
Confidence 999999999999999887654
No 167
>PRK04132 replication factor C small subunit; Provisional
Probab=99.49 E-value=1.2e-12 Score=125.69 Aligned_cols=173 Identities=21% Similarity=0.229 Sum_probs=120.8
Q ss_pred CceEEEEc--CCCChHHHHHHHHHHhc-----CCcEEEEeccchhccccChHHHHHHHHHHHhhh------CCCEEEEEc
Q 022768 66 PKGVLLYG--PPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKYIGESARLIREMFGYARD------HQPCIIFMD 132 (292)
Q Consensus 66 ~~~vll~G--~~G~GKT~l~~~la~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~lD 132 (292)
+-+-++.| |++.||||+|+++|+++ +.+++++|+++..+ ...++.+...... .+..|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 44567779 99999999999999998 45789999887532 1233333322211 123799999
Q ss_pred ccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHH
Q 022768 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL 212 (292)
Q Consensus 133 e~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~ 212 (292)
|+|.| +...+.+|..+++. +...+.+|++||+++.+.+++++ || ..+.|++|+.++....+
T Consensus 638 EaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 638 EADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 99999 77788888887764 33578899999999999999999 77 88999999999999888
Q ss_pred HHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 213 KIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
++.+...... .+..+..++..++| +.+.+.++++.+. ... ..|+.+++...
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~---~~~--~~It~~~V~~~ 750 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA---ALD--DKITDENVFLV 750 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---Hhc--CCCCHHHHHHH
Confidence 8877643322 23345667777777 4445555554433 221 24555554443
No 168
>PHA02244 ATPase-like protein
Probab=99.48 E-value=2.2e-12 Score=112.29 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=85.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccC---hHHHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIG---ESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
..+.+++|+||+|||||++|+++|..++.+++.++...-.....+ ........-+-.+. ..+++|+|||++.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a--- 192 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS--- 192 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC---
Confidence 346689999999999999999999999999999884311000111 00000001111122 34579999999988
Q ss_pred cCCCCCcchHHHHHHHHHHHHHh-----h-CCCCCCCeEEEEEeCCC-----------CCCChhhcCCCCcceEEEccCC
Q 022768 141 RFSEGTSADREIQRTLMELLNQL-----D-GFDQLGKVKMIMATNRP-----------DVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~-----~-~~~~~~~~~vi~t~~~~-----------~~l~~~l~~~~r~~~~i~l~~p 203 (292)
....+..|..++... . .....+++.+|+|+|.. ..+++++++ || ..+.+.+|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 677777777777521 1 11234688999999973 457889998 99 67899999
Q ss_pred CH
Q 022768 204 NE 205 (292)
Q Consensus 204 ~~ 205 (292)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 84
No 169
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.48 E-value=1.3e-12 Score=114.66 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=120.9
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI 107 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~ 107 (292)
+++++|.....+++.+.+... ...+.+|+|+|++||||+++|+++.... +.+++.++|..+.....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 567999999999999988775 3456789999999999999999998765 46899999987632110
Q ss_pred ChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-----
Q 022768 108 GESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD----- 167 (292)
Q Consensus 108 ~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----- 167 (292)
-..+|+. ......+.|||||++.+ ....+..|..+++......
T Consensus 74 ------~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 ------DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred ------HHHHccccccccCCcccccCCchhccCCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 1112211 12234589999999999 8888999988886532111
Q ss_pred -CCCCeEEEEEeCCC-------CCCChhhcCCCCc-ceEEEccCCCH--HHHHHHHHHHHcCc----cCC--CCCCHHHH
Q 022768 168 -QLGKVKMIMATNRP-------DVLDPALLRPGRL-DRKIEIPLPNE--QSRMEILKIHAAGI----AKH--GEIDYEAV 230 (292)
Q Consensus 168 -~~~~~~vi~t~~~~-------~~l~~~l~~~~r~-~~~i~l~~p~~--~~r~~i~~~~~~~~----~~~--~~~~~~~l 230 (292)
...++.+|++++.. ..+.+.+.. |+ ...|.+|+... ++...++.+++... ... ..++.+.+
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 01257888887653 234556655 56 23445554432 23334555554322 111 24566666
Q ss_pred HHHcCCC---CHHHHHHHHHHHHH
Q 022768 231 VKLAEGF---NGADLRNVCTEAGM 251 (292)
Q Consensus 231 ~~~~~g~---~~~di~~l~~~a~~ 251 (292)
..+...- |.+++.++++.+..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHH
Confidence 6665433 44555566666554
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2.3e-12 Score=112.61 Aligned_cols=156 Identities=20% Similarity=0.355 Sum_probs=105.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCc------------------------EEEEeccchhccccChHHHHHHHHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------FLKVVSSAIIDKYIGESARLIREMFGY 120 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
-++.+||+||+|+||+++|+.+|+.+.+. ++.+....- + ..-..+.++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHH
Confidence 36679999999999999999999988542 111211100 0 01123444454444
Q ss_pred hh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcce
Q 022768 121 AR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDR 196 (292)
Q Consensus 121 ~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 196 (292)
+. .....|++||++|.+ +......|+..+++ +.+++.+|.+|+.++.+.+.++| |+ .
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~ 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC-Q 158 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-e
Confidence 43 244679999999999 77777777777664 44688899999999999999999 88 6
Q ss_pred EEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 197 KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 197 ~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
.+.|++|+.++..+.+...... ..+.+...+...+.| +++....+.
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l~ 204 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQLH 204 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHHH
Confidence 6999999999888777754321 112223455667776 555554443
No 171
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.47 E-value=7.3e-13 Score=124.03 Aligned_cols=209 Identities=23% Similarity=0.271 Sum_probs=132.9
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccch
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAI 102 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~ 102 (292)
.+..+++.++|.....+++.+.+... .....+|+|+|++||||+++|+++.... +.+++.++|..+
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 34578999999999999999988765 3456789999999999999999999875 569999999876
Q ss_pred hccccChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC
Q 022768 103 IDKYIGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 167 (292)
.... .-..+|+. ......++|||||++.+ +...|..|..+++......
T Consensus 259 ~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 259 SETL------LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFER 321 (534)
T ss_pred CHHH------HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEE
Confidence 3311 11122221 11234579999999999 8888999988887532100
Q ss_pred ------CCCCeEEEEEeCCC-------CCCChhhcCCCCcc-eEEEccCCC--HHHHHHHHHHHHcCc----cCCCCCCH
Q 022768 168 ------QLGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGI----AKHGEIDY 227 (292)
Q Consensus 168 ------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~i~~~~~~~~----~~~~~~~~ 227 (292)
...++.+|++++.. ..+.+.+.. |+. ..|.+|+.. .++...++..++... .....++.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~ 399 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITP 399 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 01147788887653 123334443 442 345555554 234445666665432 12234566
Q ss_pred HHHHHHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 022768 228 EAVVKLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFM 267 (292)
Q Consensus 228 ~~l~~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~ 267 (292)
+.+..+...- |.++++++++.|. .......|+.+++.
T Consensus 400 ~a~~~L~~~~WPGNvrEL~~v~~~a~---~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 400 SAIRVLMSCKWPGNVRELENCLERTA---TLSRSGTITRSDFS 439 (534)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHH---HhCCCCcccHHHCc
Confidence 6666655533 4445555555554 44445678888875
No 172
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.47 E-value=2.6e-12 Score=122.81 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=131.9
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~ 104 (292)
..+|++++|.....+++.+.+... .....+|+|+|++||||+++|+++.+.. +.+++.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457999999999999888887764 3446679999999999999999999876 46999999987642
Q ss_pred cccChHHHHHHHHHHHh------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC---
Q 022768 105 KYIGESARLIREMFGYA------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL--- 169 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--- 169 (292)
. .....+|... .....++|||||++.+ +...|..|..+++.....+..
T Consensus 390 ~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 390 E------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRR 452 (638)
T ss_pred H------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 1 1112333321 1234589999999999 888999999888653211111
Q ss_pred ---CCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCc----cCCCCCCHHHHH
Q 022768 170 ---GKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGI----AKHGEIDYEAVV 231 (292)
Q Consensus 170 ---~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~----~~~~~~~~~~l~ 231 (292)
-++.+|+|++..- .+.+.+.. |+ ..+.+..|...+|. .++..++... .....++.+.+.
T Consensus 453 ~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~ 529 (638)
T PRK11388 453 LIPVDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALA 529 (638)
T ss_pred eEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHH
Confidence 1567888887531 22233332 33 24455666666664 3455554432 112235666666
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 232 KLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 232 ~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
.+...- |.++++++++.+.. ......|+.+++...+
T Consensus 530 ~L~~y~WPGNvreL~~~l~~~~~---~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 530 RLVSYRWPGNDFELRSVIENLAL---SSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHcCCCCChHHHHHHHHHHHHH---hCCCCeecHHHCchhh
Confidence 665432 44555555555443 3344567777776655
No 173
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.46 E-value=2.7e-12 Score=112.20 Aligned_cols=224 Identities=20% Similarity=0.227 Sum_probs=145.3
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc------c
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS------A 101 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~------~ 101 (292)
.+.|..++|++..+..|......| .-.++||.|+.|+||||++++++..+..--+...|. +
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 478889999999999888776554 344799999999999999999999884322111110 0
Q ss_pred --------------------------hhccccChHHHHH------HHHHHH---------hhhCCCEEEEEcccccccCC
Q 022768 102 --------------------------IIDKYIGESARLI------REMFGY---------ARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 102 --------------------------~~~~~~~~~~~~~------~~~~~~---------~~~~~~~il~lDe~d~l~~~ 140 (292)
+...-.+.+++.+ ...... ....+.+||++||++.|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---
Confidence 0111112233311 111110 11234579999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHh--------hCCCCCCCeEEEEEeCCCC-CCChhhcCCCCcceEEEccCC-CHHHHHH
Q 022768 141 RFSEGTSADREIQRTLMELLNQL--------DGFDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLP-NEQSRME 210 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~~i~l~~p-~~~~r~~ 210 (292)
+...+..|++.+... -.+....++++|+|+|+.+ +|-+.|++ ||+..+.+.+| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 889999999888773 1223444899999999864 68899999 99999988665 7789998
Q ss_pred HHHHHHcCccCCCC----------------------------CCHH------HHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 022768 211 ILKIHAAGIAKHGE----------------------------IDYE------AVVKLAEGFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 211 i~~~~~~~~~~~~~----------------------------~~~~------~l~~~~~g~~~~di~~l~~~a~~~a~~~ 256 (292)
|+++.+.- ....+ ++.. .+.....-...+-..-+++.+...|...
T Consensus 227 Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~ 305 (423)
T COG1239 227 IIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALR 305 (423)
T ss_pred HHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhc
Confidence 88866541 11000 0000 0111111111233345667777788888
Q ss_pred cCCcccHHHHHHHHHHHhhhhh
Q 022768 257 ERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 257 ~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
++..++.+|+++|..-.-....
T Consensus 306 Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 306 GRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred CceeeehhhHHHHHhhhhhhhh
Confidence 9999999999999887766543
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.5e-12 Score=114.33 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=106.2
Q ss_pred ccccccc-cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---------------
Q 022768 30 SYSAVGG-LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--------------- 93 (292)
Q Consensus 30 ~~~~l~g-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--------------- 93 (292)
.|+.|+| ++.+++.|...+..- .-++.+||+||+|+||+++++.+++.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788899 888999999887642 446678999999999999999999987432
Q ss_pred ---------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHH
Q 022768 94 ---------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (292)
Q Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l 160 (292)
+..+... +.. ...+.++.+..... .....|++|||+|.+ +...+..|+..+
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 1111110 000 11233444443332 234579999999999 666666666666
Q ss_pred HHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHH
Q 022768 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (292)
Q Consensus 161 ~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~ 214 (292)
++ +++.+.+|.+++.++.+.+.+++ |+ ..+.|++|+.++..+.++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 53 44678888888889999999999 77 7899999999888777654
No 175
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.46 E-value=2.8e-12 Score=112.51 Aligned_cols=188 Identities=23% Similarity=0.255 Sum_probs=116.2
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES 110 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~ 110 (292)
|+|.....+++.+.+... .....+|+|+|++||||+++|+++.... +.|++.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l--- 66 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL--- 66 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH---
Confidence 467778888887777664 3446789999999999999999998755 46999999987542211
Q ss_pred HHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCC
Q 022768 111 ARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQL 169 (292)
Q Consensus 111 ~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~ 169 (292)
-..+|.. ......++|||||++.| +...|..|..+++..... ...
T Consensus 67 ---~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 67 ---DSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred ---HHHHhccccccccCcccccCCchhhCCCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceec
Confidence 1122221 11234589999999999 888999999888753210 112
Q ss_pred CCeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCc----cCC--CCCCHHHHHH
Q 022768 170 GKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGI----AKH--GEIDYEAVVK 232 (292)
Q Consensus 170 ~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~----~~~--~~~~~~~l~~ 232 (292)
.++.+|++++.. ..+.+.+.. |+. .+.+..|...+|. .++..++... ... ..++.+.+..
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~ 209 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQ 209 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHH
Confidence 357888888653 123455554 552 3345555555554 4555554422 212 2456666666
Q ss_pred HcCCC---CHHHHHHHHHHHHHH
Q 022768 233 LAEGF---NGADLRNVCTEAGMS 252 (292)
Q Consensus 233 ~~~g~---~~~di~~l~~~a~~~ 252 (292)
+...- |.++++++++.+...
T Consensus 210 L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 210 LLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HHhCCCCchHHHHHHHHHHHHHh
Confidence 65533 444555555555443
No 176
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.46 E-value=3.1e-12 Score=103.70 Aligned_cols=143 Identities=21% Similarity=0.358 Sum_probs=95.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCc------------------------EEEEeccchhccccChHHHHHHHHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------FLKVVSSAIIDKYIGESARLIREMFGY 120 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
.++.+||+||+|+|||++++.+++.+.+. +..+.... .. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 45679999999999999999999987542 11111110 00 122344444444
Q ss_pred hhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcce
Q 022768 121 ARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDR 196 (292)
Q Consensus 121 ~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 196 (292)
+.. ....+++|||+|.+ ....+..|...++. +.+...+|++++.+..+.+.+++ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-E
Confidence 432 34579999999999 55555555555542 33467777778888889999998 77 6
Q ss_pred EEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCC
Q 022768 197 KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG 236 (292)
Q Consensus 197 ~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g 236 (292)
.+.|.+|+.++..+++... + +. +.....++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~--g--i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ--G--IS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc--C--CC-HHHHHHHHHHcCC
Confidence 8999999999998888776 2 22 2234555555555
No 177
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.45 E-value=9.7e-12 Score=103.74 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=105.8
Q ss_pred CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC------------CCCCCChhhcCCC
Q 022768 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN------------RPDVLDPALLRPG 192 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~------------~~~~l~~~l~~~~ 192 (292)
.|+||||||+|.| +-++-..|...+..- -..++|.++| .|+.++-.+++
T Consensus 288 vpGVLFIDEvHML-----------DIEcFsFlNrAlE~d------~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----------DIECFSFLNRALEND------MAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred ccceEEEeeehhh-----------hhHHHHHHHHHhhhc------cCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 4789999999999 777777776666531 1233444444 25678888888
Q ss_pred CcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 193 r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
|+ ..|...+++.++..+|++.++....+. .+..++.|......-+.+...+++..|...|.++....+..+|+.++++
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 77 678888899999999999888754433 2333556666666678899999999999999999999999999999999
Q ss_pred HHhhhh-hhchhhhhhhh
Q 022768 272 KLNEAK-KLESSAHYNAD 288 (292)
Q Consensus 272 ~~~~~~-~~~~~~~~~~~ 288 (292)
-+-..+ +.+-..+|.+-
T Consensus 428 LFlD~~Rs~~yl~E~~~~ 445 (454)
T KOG2680|consen 428 LFLDEKRSMKYLTEYQSG 445 (454)
T ss_pred HHhhhhhhhHHHHHhhhc
Confidence 887643 32333444443
No 178
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.45 E-value=8.5e-12 Score=114.61 Aligned_cols=221 Identities=16% Similarity=0.227 Sum_probs=147.9
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEeccch
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSAI 102 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~~~~~~~~ 102 (292)
.|.+++...+.|..++..++.. -..+.+++|.|-||||||.+++.+.+.+ ...++++|...+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~--------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD--------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC--------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3677788888888888775322 0224579999999999999999999866 356788887665
Q ss_pred hccc----------cCh------HHHHHHHHHHHh-hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 103 IDKY----------IGE------SARLIREMFGYA-RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 103 ~~~~----------~~~------~~~~~~~~~~~~-~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
.+.. .+. .-..+..-|... ....+.||+|||+|.| -...|..|..+++...
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L-----------vtr~QdVlYn~fdWpt- 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDIL-----------VTRSQDVLYNIFDWPT- 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHH-----------hcccHHHHHHHhcCCc-
Confidence 4310 000 000111111100 1135689999999999 4455788889888755
Q ss_pred CCCCCCeEEEEEeCCCCC----CChhhcCCCCcc-eEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCC--C
Q 022768 166 FDQLGKVKMIMATNRPDV----LDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGF--N 238 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~~----l~~~l~~~~r~~-~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~--~ 238 (292)
.++.+.+||+.+|..+. +...+-+ |++ ..+.|.+++.++..+|+..++.+...-.....+.+++...-. .
T Consensus 537 -~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred -CCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 55568889998887543 2333444 443 578999999999999999999876222222223333322222 4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-------CcccHHHHHHHHHHHhhh
Q 022768 239 GADLRNVCTEAGMSAIRAER-------DYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~~~-------~~i~~~~~~~a~~~~~~~ 276 (292)
.+....+|++|...|-.+.. ..|+..++.+|+..|-..
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 45666889999998888765 578999999999988754
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=9.2e-12 Score=121.74 Aligned_cols=206 Identities=20% Similarity=0.300 Sum_probs=130.0
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc-
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY- 106 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~- 106 (292)
...++|++++++.+.+.+.....+ ... .-.|...++|+||+|+|||++|++++..+ +.+++.+++.++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAG---LSD-PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhc---ccC-CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 346899999999999988653110 000 01122468999999999999999999987 4578888887764321
Q ss_pred ----cChH----H-HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCC
Q 022768 107 ----IGES----A-RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLGK 171 (292)
Q Consensus 107 ----~~~~----~-~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~ 171 (292)
.|.. . ..-..+....+....++|+|||++.+ ....+..|..+++...-. ....+
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEEeecc
Confidence 1000 0 00011222233344589999999988 788888888888653211 11235
Q ss_pred eEEEEEeCCCC-------------------------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-------
Q 022768 172 VKMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI------- 219 (292)
Q Consensus 172 ~~vi~t~~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~------- 219 (292)
+++|+|+|... .+.+.+.. |++..+.|.+++.+....|++.++...
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 67888988631 13456666 888899999999999998888776532
Q ss_pred cCCCCCCHHHHHHHcC-CCC----HHHHHHHHHHHHHHH
Q 022768 220 AKHGEIDYEAVVKLAE-GFN----GADLRNVCTEAGMSA 253 (292)
Q Consensus 220 ~~~~~~~~~~l~~~~~-g~~----~~di~~l~~~a~~~a 253 (292)
...-.++.+.+..+.. ||+ .+.++.+++.-....
T Consensus 790 gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 790 GYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENP 828 (857)
T ss_pred CCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHH
Confidence 2222345555554432 443 466666666554433
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.44 E-value=7.7e-14 Score=112.15 Aligned_cols=124 Identities=26% Similarity=0.354 Sum_probs=72.5
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----EEEeccc----
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF----LKVVSSA---- 101 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~----~~~~~~~---- 101 (292)
.|++|+|++.+|+.|+-+... ++++|++||||+|||++|+.+...+..-- +++....
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 478999999999999988764 57899999999999999999998763211 0000000
Q ss_pred ------hhc----cccChHHHHHHHHHHH--------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh
Q 022768 102 ------IID----KYIGESARLIREMFGY--------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (292)
Q Consensus 102 ------~~~----~~~~~~~~~~~~~~~~--------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 163 (292)
+.. .....+ .....++.- +.....+||||||+..+ +....+.|.+.++..
T Consensus 66 ~~~~~~~~~~~Pfr~phhs-~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHS-ASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp -S---EEEE---EEEE-TT---HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHHHS
T ss_pred CCCCCceecCCCcccCCCC-cCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-----------CHHHHHHHHHHHHCC
Confidence 000 000000 001111211 12245589999999888 888888888888764
Q ss_pred hC--------CCCCCCeEEEEEeCC
Q 022768 164 DG--------FDQLGKVKMIMATNR 180 (292)
Q Consensus 164 ~~--------~~~~~~~~vi~t~~~ 180 (292)
.. ..-..++.+|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 21 112227889999884
No 181
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.44 E-value=4.2e-12 Score=116.13 Aligned_cols=217 Identities=21% Similarity=0.234 Sum_probs=135.3
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc----EEEEecc----
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----FLKVVSS---- 100 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----~~~~~~~---- 100 (292)
.+|.+++|...+++.+.-. ...+.+++|+||+|+|||++++.++..+... .+++..-
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 4788999998877765433 2457889999999999999999999866321 1111110
Q ss_pred -------chhcc-c--cC--hHHH-HHH----HHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh
Q 022768 101 -------AIIDK-Y--IG--ESAR-LIR----EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (292)
Q Consensus 101 -------~~~~~-~--~~--~~~~-~~~----~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 163 (292)
.+... + .. .+.. .+. .--........++|||||++.+ +...+..|.+.++.-
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~-----------~~~~~~~L~~~LE~g 321 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF-----------ERRTLDALREPIESG 321 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC-----------CHHHHHHHHHHHHcC
Confidence 00000 0 00 0011 110 0001222344589999999988 788888888887553
Q ss_pred hC--------CCCCCCeEEEEEeCCCC---------------------CCChhhcCCCCcceEEEccCCCHHH-------
Q 022768 164 DG--------FDQLGKVKMIMATNRPD---------------------VLDPALLRPGRLDRKIEIPLPNEQS------- 207 (292)
Q Consensus 164 ~~--------~~~~~~~~vi~t~~~~~---------------------~l~~~l~~~~r~~~~i~l~~p~~~~------- 207 (292)
.. .....++.+|+|+|... .++..+++ ||+..+.+++++.++
T Consensus 322 ~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~ 399 (506)
T PRK09862 322 QIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVP 399 (506)
T ss_pred cEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCC
Confidence 21 11234789999998742 36678888 999999998875321
Q ss_pred ---HHHHHHHHH----cC----ccCCCCCCHHHHH----------------HHcCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 022768 208 ---RMEILKIHA----AG----IAKHGEIDYEAVV----------------KLAEGFNGADLRNVCTEAGMSAIRAERDY 260 (292)
Q Consensus 208 ---r~~i~~~~~----~~----~~~~~~~~~~~l~----------------~~~~g~~~~di~~l~~~a~~~a~~~~~~~ 260 (292)
...+-+... .+ ...+..+....+. ....|+|.|....+++-|...|..+++..
T Consensus 400 ~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~ 479 (506)
T PRK09862 400 GESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDI 479 (506)
T ss_pred CCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 111111100 00 0111222111111 12236799999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 022768 261 VIHEDFMKAVRKL 273 (292)
Q Consensus 261 i~~~~~~~a~~~~ 273 (292)
|+.+|+.+|+..-
T Consensus 480 V~~~hv~eAl~yR 492 (506)
T PRK09862 480 ITRQHLQEAVSYR 492 (506)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.43 E-value=1.1e-11 Score=105.05 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=130.0
Q ss_pred cccccHHHH---HHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CcEEEEecc
Q 022768 33 AVGGLSDQI---RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---------ANFLKVVSS 100 (292)
Q Consensus 33 ~l~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---------~~~~~~~~~ 100 (292)
.-+|+..+. ++|.+.+..| ......+++|+|++|.|||++++.+++... .|++.+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 345665554 4455555444 123356799999999999999999997662 356666543
Q ss_pred chhcc----------------ccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh
Q 022768 101 AIIDK----------------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (292)
Q Consensus 101 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 164 (292)
.-.+. ...........+....+..+..+|+|||+|.++.+ ....+..++++++.+.
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLG 176 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHh
Confidence 22210 01112333344556667778899999999997532 3445666777776663
Q ss_pred CCCCCCCeEEEEEeC--CCC--CCChhhcCCCCcceEEEccCCC-HHHHHHHHHHHHcCccCC--CCCC----HHHHHHH
Q 022768 165 GFDQLGKVKMIMATN--RPD--VLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKH--GEID----YEAVVKL 233 (292)
Q Consensus 165 ~~~~~~~~~vi~t~~--~~~--~l~~~l~~~~r~~~~i~l~~p~-~~~r~~i~~~~~~~~~~~--~~~~----~~~l~~~ 233 (292)
. .-++.+|+... -.. .-++.+.+ || ..+.++.-. .++...++..+....+.. ..+. ...+..+
T Consensus 177 N---eL~ipiV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~ 250 (302)
T PF05621_consen 177 N---ELQIPIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHER 250 (302)
T ss_pred h---ccCCCeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 2 12334444332 112 23456666 88 445554432 245555666555433322 2222 2456677
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 022768 234 AEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK 268 (292)
Q Consensus 234 ~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~ 268 (292)
++| +.|++..++..|...|+..+...||.+.+..
T Consensus 251 s~G-~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 251 SEG-LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred cCC-chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 888 5559999999999999999999999988876
No 183
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.43 E-value=4.5e-12 Score=117.88 Aligned_cols=210 Identities=21% Similarity=0.243 Sum_probs=129.1
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccch
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAI 102 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~ 102 (292)
....+|++++|.....+++.+.+... .....+|+|+|++||||+++|+++.... ..+++.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 35679999999999888888777653 2346679999999999999999987654 468999999886
Q ss_pred hccccChHHHHHHHHHHHh---------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC
Q 022768 103 IDKYIGESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 167 (292)
.... .-..+|... .....+.|||||++.+ +...|..|..+++.....+
T Consensus 267 ~~~~------~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 267 PDDV------VESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRR 329 (520)
T ss_pred CHHH------HHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC-----------CHHHHHHHHHHHhcCCccc
Confidence 4311 111223211 1234579999999999 8888999988887532101
Q ss_pred ------CCCCeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcC----ccC-CCCC
Q 022768 168 ------QLGKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAG----IAK-HGEI 225 (292)
Q Consensus 168 ------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~----~~~-~~~~ 225 (292)
...++.+|++++.. ....+.+.. |+. .+.+..|+..+|. .++..++.. ... ...+
T Consensus 330 ~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~l 406 (520)
T PRK10820 330 VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKL 406 (520)
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 11256788887653 123444554 542 2455555555554 344444432 222 1246
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 226 DYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 226 ~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
+.+.+..+...-.|++++++-+.....+.......|+.+++
T Consensus 407 s~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 407 AADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 67777776654344455554444443333334445666664
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.8e-11 Score=106.32 Aligned_cols=168 Identities=13% Similarity=0.209 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------------------------
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------ 93 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------------------------ 93 (292)
....+.|.+.+..- .-++.+||+||+|+||+++|+.+|+.+-+.
T Consensus 8 ~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 8 QPTYQQITQAFQQG------------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred HHHHHHHHHHHHcC------------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34566666665441 346789999999999999999999988442
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 169 (292)
+..+...+ +.. -..+.++.+...+. .....|++||++|.| .......|+..++ .++
T Consensus 76 ~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE-----EPp 135 (325)
T PRK06871 76 FHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE-----EPR 135 (325)
T ss_pred EEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc-----CCC
Confidence 11111100 010 12334444444332 234579999999999 7777777777666 456
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHH
Q 022768 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 170 ~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l 245 (292)
+++.+|.+|+.++.+.+.++| |+ ..+.|++|+.++..+.+...... .......+...+.| +++...++
T Consensus 136 ~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~~~~----~~~~~~~~~~l~~g-~p~~A~~~ 203 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQSSA----EISEILTALRINYG-RPLLALTF 203 (325)
T ss_pred CCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHHhcc----ChHHHHHHHHHcCC-CHHHHHHH
Confidence 788999999999999999999 88 77899999998888777654321 11123344555665 44444433
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.42 E-value=5.3e-12 Score=99.56 Aligned_cols=134 Identities=25% Similarity=0.379 Sum_probs=90.8
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc----------------------
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---------------------- 93 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---------------------- 93 (292)
|++++++.|.+.+..- .-++.+||+||+|+||+++|..+++.+-+.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888999999888652 446779999999999999999999877321
Q ss_pred -EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 94 -FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
++.+....... .-..+.++.+...... ....|++|||+|.+ ..+.+.+|+..+++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 22232221100 0123444454444432 35689999999999 88888888888874 4
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCC
Q 022768 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 169 ~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p 203 (292)
..++.+|.+|+.++.+.+.++| |+ ..+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 5689999999999999999999 77 66777654
No 186
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=1.5e-11 Score=120.64 Aligned_cols=207 Identities=19% Similarity=0.298 Sum_probs=133.4
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc--
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY-- 106 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~-- 106 (292)
..++|++++++.+.+.+.....+ .. ..-.|...++|.||+|+|||++|++++..+ +.+++.++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LS-DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 46899999999999998763111 00 001234568999999999999999999987 4578888887654321
Q ss_pred ---cChH----H-HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CCCCe
Q 022768 107 ---IGES----A-RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGKV 172 (292)
Q Consensus 107 ---~~~~----~-~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~ 172 (292)
.|.. . ..-..+....+....+||+|||++.+ ....+..|+++++...-.. ...++
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 1100 0 00112333334455679999999998 8888999999887542111 12367
Q ss_pred EEEEEeCCCCC-------------------------CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-------c
Q 022768 173 KMIMATNRPDV-------------------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-------A 220 (292)
Q Consensus 173 ~vi~t~~~~~~-------------------------l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-------~ 220 (292)
+||+|+|.... ..+.+.. |++.++.|.+++.+...+|+...+... .
T Consensus 710 iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred EEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 79999987321 2344554 888899999999999999888665421 1
Q ss_pred CCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHH
Q 022768 221 KHGEIDYEAVVKLAE-----GFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 221 ~~~~~~~~~l~~~~~-----g~~~~di~~l~~~a~~~a~~ 255 (292)
+.-.++.+.+..+.. .+..+.++.+++......+.
T Consensus 788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 788 ITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred CeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 122334443333322 34567888777776655544
No 187
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=1.7e-12 Score=114.35 Aligned_cols=201 Identities=25% Similarity=0.286 Sum_probs=130.7
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~ 99 (292)
.......+++|+|.....+++.+.+... .+.+.+|||+|++|+||+.+|+.+.... ..|++.+||
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NC 138 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNC 138 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEH
Confidence 3456678899999999999988888764 4668889999999999999999888533 569999999
Q ss_pred cchhccccChHHHHHHHHHHHhhh---------------CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh
Q 022768 100 SAIIDKYIGESARLIREMFGYARD---------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 164 (292)
..+....... .+|+..+. ...++|||||++.+ ....|..|+.+++...
T Consensus 139 a~~~en~~~~------eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-----------P~~~Q~kLl~~le~g~ 201 (403)
T COG1221 139 AAYSENLQEA------ELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-----------PPEGQEKLLRVLEEGE 201 (403)
T ss_pred HHhCcCHHHH------HHhccccceeecccCCcCchheecCCCEEehhhhhhC-----------CHhHHHHHHHHHHcCc
Confidence 9886654322 24443321 34579999999999 8899999999998742
Q ss_pred CC------CCCCCeEEEEEeCCC--CCCCh--hhcCCCCcceEEEccCCCH--HHHHHHHHHHHc----CccCCCCCCH-
Q 022768 165 GF------DQLGKVKMIMATNRP--DVLDP--ALLRPGRLDRKIEIPLPNE--QSRMEILKIHAA----GIAKHGEIDY- 227 (292)
Q Consensus 165 ~~------~~~~~~~vi~t~~~~--~~l~~--~l~~~~r~~~~i~l~~p~~--~~r~~i~~~~~~----~~~~~~~~~~- 227 (292)
-. .....+.+|++|+.. +.+-. .+.++ ++...|++|+... +++..++++++. ........+.
T Consensus 202 ~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 202 YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 11 122367788877542 22333 34331 3334555555432 233344555544 3333322222
Q ss_pred HHHHHHc----CCCCHHHHHHHHHHHHHHHH
Q 022768 228 EAVVKLA----EGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 228 ~~l~~~~----~g~~~~di~~l~~~a~~~a~ 254 (292)
+.+.... .| |.+++.++++.++..+.
T Consensus 281 ~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 281 EALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 3333322 33 77888888888887774
No 188
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=4.5e-12 Score=113.91 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=138.1
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~ 101 (292)
....++|++|+|...+..++.+.+... .....+|||.|.+||||..+|+++-+.. +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 445689999999999999998888765 4567789999999999999999999876 56999999998
Q ss_pred hhccccChHHHHHHHHHHHhhh----------------CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 102 IIDKYIGESARLIREMFGYARD----------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
+......+ ++|+.... ...+.|||||+..| +-..|..|+..+++.+-
T Consensus 307 iPe~LlES------ELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----------pl~LQaKLLRVLQEkei 369 (560)
T COG3829 307 IPETLLES------ELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----------PLPLQAKLLRVLQEKEI 369 (560)
T ss_pred CCHHHHHH------HHhCcCCccccccccCCCCcceeeccCCeEEehhhccC-----------CHHHHHHHHHHHhhceE
Confidence 76543322 44444321 34579999999988 88899999999987531
Q ss_pred C------CCCCCeEEEEEeCCC-C------CCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHc----CccCC-C
Q 022768 166 F------DQLGKVKMIMATNRP-D------VLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAA----GIAKH-G 223 (292)
Q Consensus 166 ~------~~~~~~~vi~t~~~~-~------~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~----~~~~~-~ 223 (292)
. .-.-++.+|++||.. . ..-.+|-- |. -++.+..|...+|.+ +..+++. .+... .
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred EecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--ee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 1 111168899999863 1 12222222 33 345666666666653 3333333 23222 3
Q ss_pred CCCHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 022768 224 EIDYEAVVKLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFM 267 (292)
Q Consensus 224 ~~~~~~l~~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~ 267 (292)
.+..+.+......- |.|++.+++.++...+ .....|+.+|+.
T Consensus 447 ~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 447 GLSPDALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred cCCHHHHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 35556666554422 6677778888887632 222235555544
No 189
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.40 E-value=1.2e-11 Score=120.60 Aligned_cols=167 Identities=20% Similarity=0.315 Sum_probs=113.1
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc---
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--- 105 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~--- 105 (292)
..++|++++++.+.+.+.....+ ... .-.|-..++|+||+|+|||.+|+++|..+ ...++.+++.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LED-PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46899999999999988653111 000 01222358999999999999999999988 457788887765322
Q ss_pred ---------ccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CCC
Q 022768 106 ---------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLG 170 (292)
Q Consensus 106 ---------~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~ 170 (292)
+.|..+. ..+....+.+.++||+|||++.. ++.....|+++++...-.. ...
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 1111110 12233445567799999999987 7788888888887542111 113
Q ss_pred CeEEEEEeCCCC-----------------------------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC
Q 022768 171 KVKMIMATNRPD-----------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218 (292)
Q Consensus 171 ~~~vi~t~~~~~-----------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~ 218 (292)
++++|+|+|... .+.+.+++ |+. .+.|.+++.++..+|+...+..
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 688999988521 13445565 775 7899999999999998876653
No 190
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.40 E-value=2.6e-11 Score=118.63 Aligned_cols=169 Identities=22% Similarity=0.319 Sum_probs=114.6
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc--
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY-- 106 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~-- 106 (292)
..++|++++++.+...+.....+ ... .-.|-..++|+||+|+|||++|+.+|+.+ +.++++++++++....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 55899999999999888653111 000 01223458999999999999999999987 3578888877654321
Q ss_pred ---cChH-----HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCCe
Q 022768 107 ---IGES-----ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLGKV 172 (292)
Q Consensus 107 ---~~~~-----~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~ 172 (292)
.|.. ......+....+....+||+|||+|.+ .......|+++++...-. -...++
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 1110 000113344445555689999999998 788888888888753210 112478
Q ss_pred EEEEEeCCCCC-------------------------------------CChhhcCCCCcceEEEccCCCHHHHHHHHHHH
Q 022768 173 KMIMATNRPDV-------------------------------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIH 215 (292)
Q Consensus 173 ~vi~t~~~~~~-------------------------------------l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~ 215 (292)
++|+|+|.... ..|.+.. |++.++.|.+++.++..+|+...
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 89999875321 1234555 88889999999999999998876
Q ss_pred Hc
Q 022768 216 AA 217 (292)
Q Consensus 216 ~~ 217 (292)
+.
T Consensus 732 l~ 733 (821)
T CHL00095 732 LK 733 (821)
T ss_pred HH
Confidence 65
No 191
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.6e-11 Score=107.57 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------------------------
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------ 93 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------------------------ 93 (292)
....+++.+.+..- .-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 8 ~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 8 RPDYEQLVGSYQAG------------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred hHHHHHHHHHHHcC------------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 34556666665431 446789999999999999999999988431
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 169 (292)
+..+....- +. .-..+.++.+...+ ......|++||++|.| .......|+..++ .+.
T Consensus 76 ~~~i~p~~~-~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp 136 (334)
T PRK07993 76 YYTLTPEKG-KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE-----EPP 136 (334)
T ss_pred EEEEecccc-cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc-----CCC
Confidence 111111100 00 01233344444333 2345679999999999 7777777777666 456
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHH
Q 022768 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 170 ~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l 245 (292)
+++++|.+|+.++.+.+.++| |+ ..+.|++|+.++..+.+.... ..+ ......++..+.| +++....+
T Consensus 137 ~~t~fiL~t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G-~~~~Al~l 204 (334)
T PRK07993 137 ENTWFFLACREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAG-APGAALAL 204 (334)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC-CHHHHHHH
Confidence 789999999999999999999 88 568999999888777665422 111 1123345666666 55544444
No 192
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.39 E-value=3.1e-12 Score=107.54 Aligned_cols=203 Identities=19% Similarity=0.189 Sum_probs=137.6
Q ss_pred CChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
..+.-..+..+.++|..++++++.++.+..+.++... ..-.+.|+|||||+|||+...+.|+.+..+
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~ 89 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSP 89 (360)
T ss_pred CCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCC
Confidence 3444444555789999999999999999999998543 233389999999999999999999998764
Q ss_pred E------EEEeccchhccccChHHHHHHHHHHHhhh-------CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHH
Q 022768 94 F------LKVVSSAIIDKYIGESARLIREMFGYARD-------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (292)
Q Consensus 94 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l 160 (292)
. ..++.++-.+. ...+.-...|...+. ..+..++|||+|.+ ....|.+|...+
T Consensus 90 ~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRvi 155 (360)
T KOG0990|consen 90 HPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVI 155 (360)
T ss_pred CCchhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHH
Confidence 2 12222222211 122333344555442 25679999999999 888888888766
Q ss_pred HHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCH
Q 022768 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNG 239 (292)
Q Consensus 161 ~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~ 239 (292)
.... .++.++..+|.+..+.+++++ || ..+.|.+.+.......+.+....-... .......+... +.
T Consensus 156 ek~t-----~n~rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~ 223 (360)
T KOG0990|consen 156 EKYT-----ANTRFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SV 223 (360)
T ss_pred HHhc-----cceEEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hH
Confidence 5543 466677889999999999999 77 667788888777777777666532222 11122333333 34
Q ss_pred HHHHHHHHHHHHHHHH
Q 022768 240 ADLRNVCTEAGMSAIR 255 (292)
Q Consensus 240 ~di~~l~~~a~~~a~~ 255 (292)
+|++.+++-....+..
T Consensus 224 gDmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 224 GDMRVALNYLQSILKK 239 (360)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4888777665555444
No 193
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.38 E-value=5.1e-12 Score=116.80 Aligned_cols=207 Identities=23% Similarity=0.290 Sum_probs=126.7
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCcEEEE
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN-----------IDANFLKV 97 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~-----------l~~~~~~~ 97 (292)
.+|++++|.....+++.+.+... .....+|||+|++||||+++|+++.+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 57899999999999999888764 345678999999999999999999887 35699999
Q ss_pred eccchhccccChHHHHHHHHHHH----------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHH
Q 022768 98 VSSAIIDKYIGESARLIREMFGY----------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~ 161 (292)
+|..+..... -..+|.. ......+.|||||++.| +...|..|..+++
T Consensus 285 nCaal~e~ll------eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-----------p~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLL------EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM-----------PLPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhH------HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC-----------CHHHHHHHHhhhh
Confidence 9988643211 1122221 11234579999999999 8889999999887
Q ss_pred HhhCCC------CCCCeEEEEEeCCCC-C------CChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCc--cCC
Q 022768 162 QLDGFD------QLGKVKMIMATNRPD-V------LDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGI--AKH 222 (292)
Q Consensus 162 ~~~~~~------~~~~~~vi~t~~~~~-~------l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~--~~~ 222 (292)
.....+ -.-++.+|++++..- . +.+.+.. |+ ..+.+..|...+|. .++.+++... ...
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 642111 112467888886531 1 2222322 33 23455556555554 4555665432 111
Q ss_pred CCCCHHHH-------HHHcC-CC--CHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 223 GEIDYEAV-------VKLAE-GF--NGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 223 ~~~~~~~l-------~~~~~-g~--~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
..+..+.+ ..+.. .| |.++++++++++..++.......++.+++
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 12333222 12221 12 66777777777776542222234555554
No 194
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.37 E-value=1.8e-11 Score=113.84 Aligned_cols=194 Identities=24% Similarity=0.277 Sum_probs=126.2
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~ 106 (292)
++.+++|....++++.+.+... ...+.+|+|+|++||||+++|+++.... +.+++.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5788999999999999988774 3457789999999999999999999875 4699999998874321
Q ss_pred cChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC----
Q 022768 107 IGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD---- 167 (292)
Q Consensus 107 ~~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 167 (292)
. -..+|.. ......+.|||||++.| ....+..|..+++.....+
T Consensus 254 ~------e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 254 A------ESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred H------HHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCC
Confidence 1 1122221 11234579999999999 8888888988886532100
Q ss_pred --CCCCeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCcc-----CCCCCCHHH
Q 022768 168 --QLGKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGIA-----KHGEIDYEA 229 (292)
Q Consensus 168 --~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~~-----~~~~~~~~~ 229 (292)
...++.+|++++.. ..+...+.. |+. .+.+..|+..+|. .++.+++.... ....++.+.
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 11257888888753 124444443 442 3344555555554 34455544321 123456666
Q ss_pred HHHHcCCC---CHHHHHHHHHHHHHHHH
Q 022768 230 VVKLAEGF---NGADLRNVCTEAGMSAI 254 (292)
Q Consensus 230 l~~~~~g~---~~~di~~l~~~a~~~a~ 254 (292)
+..+...- |.++++++++.|...+.
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 66554421 66777788888776654
No 195
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.36 E-value=1.7e-11 Score=113.42 Aligned_cols=211 Identities=23% Similarity=0.291 Sum_probs=128.6
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~ 104 (292)
..+|++++|.....+++.+.+... .....+|+|+|++||||+++|+++.+.. +.|++.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 477899999999999999888764 3456789999999999999999998764 56999999987643
Q ss_pred cccChHHHHHHHHHHH----------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-
Q 022768 105 KYIGESARLIREMFGY----------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD- 167 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~----------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~- 167 (292)
.. .-..+|.. ......+.|||||++.| +...|..|..+++.....+
T Consensus 277 ~l------leseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 277 SL------LEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRV 339 (526)
T ss_pred hH------HHHHhcCCcccccccccccccccchhhcCCceEEecChHhC-----------CHHHHHHHHHHHhcCcEEec
Confidence 21 11123321 11134579999999999 8889999999887543111
Q ss_pred -----CCCCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCccC--CCCCCHHH
Q 022768 168 -----QLGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGIAK--HGEIDYEA 229 (292)
Q Consensus 168 -----~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~~~--~~~~~~~~ 229 (292)
..-++.+|++++..- .+.+.+.. |+. .+.+..|+..+|. .++..++..... ...++.+.
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 111457888876531 12223332 331 2344455545544 455555543311 11244444
Q ss_pred HHH-------HcC-CC--CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 230 VVK-------LAE-GF--NGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 230 l~~-------~~~-g~--~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
+.. +.. .| |.+++.++++++...+.......|+.+++...
T Consensus 417 ~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 332 322 12 55666666666654432222346777776543
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=9.4e-11 Score=101.64 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----------------------E
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-----------------------F 94 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-----------------------~ 94 (292)
.+..+++...+..- .-++.+||+||.|+||+++|+.+|+.+-+. +
T Consensus 9 ~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 9 VPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 45666777666542 446789999999999999999999877332 2
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG 170 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 170 (292)
..+....- +.. -..+.++.+...+. .....|++||++|.+ .......|+..++ .+.+
T Consensus 77 ~~i~p~~~-~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~ 137 (319)
T PRK06090 77 HVIKPEKE-GKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE-----EPAP 137 (319)
T ss_pred EEEecCcC-CCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc-----CCCC
Confidence 22221100 000 12233444433332 234579999999999 6767777777666 3556
Q ss_pred CeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 171 KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 171 ~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
++.+|.+|+.++.+.+.++| |+ ..+.|++|+.++..+.+... + .. ....+...+.| ++.....+.
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~~--~--~~---~~~~~l~l~~G-~p~~A~~~~ 202 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKGQ--G--IT---VPAYALKLNMG-SPLKTLAMM 202 (319)
T ss_pred CeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHHc--C--Cc---hHHHHHHHcCC-CHHHHHHHh
Confidence 89999999999999999999 88 78899999998887776542 1 11 12344555665 554444443
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=7.9e-11 Score=102.21 Aligned_cols=172 Identities=19% Similarity=0.239 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE----EEEeccchh------cc--
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF----LKVVSSAII------DK-- 105 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~----~~~~~~~~~------~~-- 105 (292)
..+++.+...+..- .-++.+||+||+|+||+++|..+|+.+-+.- -.+.++... +.
T Consensus 10 ~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 45566676665541 3456799999999999999999998774321 001110000 00
Q ss_pred ---c---------cChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC
Q 022768 106 ---Y---------IGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (292)
Q Consensus 106 ---~---------~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 169 (292)
. ..-..+.++.+...+.. ....|++||++|.| +......|+..+++ +.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----CC
Confidence 0 00123344555444432 23479999999999 77777777777664 45
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 170 ~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
+++.+|.+++.++.+.+.++| |+ ..+.|++|+.++..+.+... ... ..+...+...+.| +++....++
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G-~p~~A~~~~ 209 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG-HPGLAAQWL 209 (319)
T ss_pred CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC-CHHHHHHHh
Confidence 688888899999999999999 88 77899999998777766542 111 1123355666776 554444443
No 198
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=4.1e-11 Score=115.46 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=124.2
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~ 104 (292)
...|++++|....++.+.+.+... .....+|+|+|++|||||++|+++.... +.+++.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 357889999999999998888764 2446689999999999999999998865 56999999987642
Q ss_pred cc-----cChHH----HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCC
Q 022768 105 KY-----IGESA----RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQL 169 (292)
Q Consensus 105 ~~-----~~~~~----~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~ 169 (292)
.. .|... ...............++|||||++.+ +...+..|..+++..... ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 21 11000 00001111122334589999999999 888999999988753210 111
Q ss_pred CCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHcCc----cCC-CCCCHHHHHHH
Q 022768 170 GKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAAGI----AKH-GEIDYEAVVKL 233 (292)
Q Consensus 170 ~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~~~----~~~-~~~~~~~l~~~ 233 (292)
.++.+|++++..- .+...+.. |+ ..+.+..|+..+|.+ +++.++... ... ..+..+.+..+
T Consensus 510 ~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578888886531 12233332 33 234556666666643 555554432 111 23555666655
Q ss_pred cCCC---CHHHHHHHHHHHHHH
Q 022768 234 AEGF---NGADLRNVCTEAGMS 252 (292)
Q Consensus 234 ~~g~---~~~di~~l~~~a~~~ 252 (292)
...- |.+++.++++.|...
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHh
Confidence 4422 566677777776653
No 199
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=2.2e-11 Score=108.19 Aligned_cols=195 Identities=28% Similarity=0.389 Sum_probs=132.5
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~ 104 (292)
...+.++||...+...+.+.+... .....+|||.|.+||||..+|+++-... ..|++.+||..+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 567889999999999999998765 4567789999999999999999999876 56999999998865
Q ss_pred cccChHHHHHHHHHHHhhh---------------CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh--CCC
Q 022768 105 KYIGESARLIREMFGYARD---------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GFD 167 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~---------------~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~ 167 (292)
....+ ++|+..+. ...+.||||||..| .-..|..|+..++..+ -..
T Consensus 288 sLlES------ELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLES------ELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHH------HHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecC
Confidence 43322 44444332 34579999999888 7889999999988643 111
Q ss_pred CCC----CeEEEEEeCCC-C------CCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHc----CccC-CCCCCH
Q 022768 168 QLG----KVKMIMATNRP-D------VLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAA----GIAK-HGEIDY 227 (292)
Q Consensus 168 ~~~----~~~vi~t~~~~-~------~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~----~~~~-~~~~~~ 227 (292)
... .+.||++||.- + +.-.++.- |. -++-+..|...+|.. +.++++. .... .-.++.
T Consensus 351 ~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 111 58899999862 1 12222222 33 244455566666542 3334433 2222 233455
Q ss_pred HHHHHHcCC-C--CHHHHHHHHHHHHHHH
Q 022768 228 EAVVKLAEG-F--NGADLRNVCTEAGMSA 253 (292)
Q Consensus 228 ~~l~~~~~g-~--~~~di~~l~~~a~~~a 253 (292)
+.+...++- | |.+++.+++++|...|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 666665541 1 7789999999999877
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.34 E-value=1.2e-12 Score=100.86 Aligned_cols=113 Identities=32% Similarity=0.433 Sum_probs=72.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc--ccChHHHH-H-----HHHHHHhhhCCCEEEEEcccccccC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--YIGESARL-I-----REMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~-~-----~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
+|+|+||||+|||++++.+|+.++.+++.+.+....+. ..+..... - ...+..+. ..+.+++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999988887654321 00000000 0 00000000 14689999999988
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCC--------CCCC------CeEEEEEeCCCC----CCChhhcCCCCc
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGF--------DQLG------KVKMIMATNRPD----VLDPALLRPGRL 194 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~------~~~vi~t~~~~~----~l~~~l~~~~r~ 194 (292)
.......|..+++..... .... ++.+|+|+|+.. .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 777888888887643211 0011 389999999987 78999998 76
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.1e-10 Score=102.10 Aligned_cols=133 Identities=19% Similarity=0.311 Sum_probs=93.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcE-------------------------EEEeccchh---------------
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF-------------------------LKVVSSAII--------------- 103 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~-------------------------~~~~~~~~~--------------- 103 (292)
.-++.+||+||+|+||+++|+.+|+.+.+.- ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4467899999999999999999999885421 111110000
Q ss_pred ---cc----c-cChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCC
Q 022768 104 ---DK----Y-IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK 171 (292)
Q Consensus 104 ---~~----~-~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 171 (292)
+. . ..-..+.++.+...+. .....|++||++|.+ .......|+..++ .+.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE-----EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc-----CCCcC
Confidence 00 0 0012233444444332 234579999999999 7777777777666 46678
Q ss_pred eEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHH
Q 022768 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIH 215 (292)
Q Consensus 172 ~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~ 215 (292)
+++|.+|+.++.+.+.++| |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 88 78999999998888877653
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.9e-11 Score=115.37 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=119.1
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEeccchhccc--
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAIIDKY-- 106 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~~~~~~~~-- 106 (292)
..++|+++++..+-+.+...-.+ +.. .-.|...+||.||+|+|||-+|+++|..+. ..+++++++++..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaG---L~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAG---LGD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 45899999999999998764111 111 113445689999999999999999999995 789999999886431
Q ss_pred ----------cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC------
Q 022768 107 ----------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG------ 170 (292)
Q Consensus 107 ----------~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------ 170 (292)
+|..+ =..+-..++....+||+|||++.- .+.+...|+++++...-....+
T Consensus 567 SrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 567 SRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 11111 123334445566799999999987 8888889998887643222222
Q ss_pred CeEEEEEeCCCCC----------------------------CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 171 KVKMIMATNRPDV----------------------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 171 ~~~vi~t~~~~~~----------------------------l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
++++|+|+|.-.. ..|.++. |++.+|.|.+.+.+...+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 6888999874211 2334444 8888999999999999998886665
No 203
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.33 E-value=4.3e-11 Score=94.74 Aligned_cols=119 Identities=31% Similarity=0.443 Sum_probs=82.6
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES 110 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~ 110 (292)
|+|.....+++.+.+... ...+.+|+|+|++||||+.+|+++.+.. +.|++.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~----- 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEE----- 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HH-----
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcc-----
Confidence 578888888888887765 3446789999999999999999999876 468999999886432
Q ss_pred HHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CC
Q 022768 111 ARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QL 169 (292)
Q Consensus 111 ~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~ 169 (292)
..-..+|.. ......++|||||++.| +...|..|..+++...-.+ ..
T Consensus 65 -~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 65 -LLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp -HHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE
T ss_pred -hhhhhhhccccccccccccccCCceeeccceEEeecchhhh-----------HHHHHHHHHHHHhhchhcccccccccc
Confidence 112234432 22345589999999999 8999999999998643111 11
Q ss_pred CCeEEEEEeCC
Q 022768 170 GKVKMIMATNR 180 (292)
Q Consensus 170 ~~~~vi~t~~~ 180 (292)
.++.+|++|+.
T Consensus 133 ~~~RiI~st~~ 143 (168)
T PF00158_consen 133 VDVRIIASTSK 143 (168)
T ss_dssp --EEEEEEESS
T ss_pred ccceEEeecCc
Confidence 27889999885
No 204
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.7e-10 Score=101.80 Aligned_cols=223 Identities=20% Similarity=0.207 Sum_probs=143.6
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cEEEEeccchhc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLKVVSSAIID 104 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~~~~~~~~~~~ 104 (292)
.-+.+.|.+...+.+.+++...+.. ..+..+++.|.||+|||..+.-+...+.. ..++++|..+..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 4467899999999999998876433 56778999999999999999877766632 347777775432
Q ss_pred cc---------------cChHHHHHHHHHHH-hhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC
Q 022768 105 KY---------------IGESARLIREMFGY-ARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (292)
Q Consensus 105 ~~---------------~~~~~~~~~~~~~~-~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 167 (292)
.. .+.+.......|.. .... .+-++++||+|.|+ ...+..|..++..-. .
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~-----------tr~~~vLy~lFewp~--l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI-----------TRSQTVLYTLFEWPK--L 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHh-----------hcccceeeeehhccc--C
Confidence 10 00011111222222 2222 36789999999994 333445555554322 4
Q ss_pred CCCCeEEEEEeCCCCCCC---hhhcC-CCCcceEEEccCCCHHHHHHHHHHHHcCccCCCC--CCHHHHHHHcCCCCHHH
Q 022768 168 QLGKVKMIMATNRPDVLD---PALLR-PGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE--IDYEAVVKLAEGFNGAD 241 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~---~~l~~-~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~--~~~~~l~~~~~g~~~~d 241 (292)
++.++++|+.+|..+.-+ +.+.. ...-...+.|++++.++..+|+...+........ ..++..++...+.|| |
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-D 364 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-D 364 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-h
Confidence 556899999999765322 22222 1223467899999999999999999986654433 345667777777555 8
Q ss_pred HH---HHHHHHHHHHHHhcCC----------------cccHHHHHHHHHHHhh
Q 022768 242 LR---NVCTEAGMSAIRAERD----------------YVIHEDFMKAVRKLNE 275 (292)
Q Consensus 242 i~---~l~~~a~~~a~~~~~~----------------~i~~~~~~~a~~~~~~ 275 (292)
++ .+|+.|...+....+. .|-.+++..++..+..
T Consensus 365 lRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 365 LRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 87 4566666666554332 3446667666666654
No 205
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.30 E-value=1.9e-10 Score=108.28 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=89.1
Q ss_pred CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-------------C---CCCeEEEEEeCCC--CCCChh
Q 022768 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-------------Q---LGKVKMIMATNRP--DVLDPA 187 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------------~---~~~~~vi~t~~~~--~~l~~~ 187 (292)
.++|+|||++.| +...+..|.++++...-.. + .-++.+|++++.. +.++++
T Consensus 227 GGtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred CcEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 368899999888 6778888888876432100 1 1156788888764 467888
Q ss_pred hcCCCCcc---eEEEccC---CCHHHHHHHHHHHHcCccC---CCCCCHHHHHHHcC------C------CCHHHHHHHH
Q 022768 188 LLRPGRLD---RKIEIPL---PNEQSRMEILKIHAAGIAK---HGEIDYEAVVKLAE------G------FNGADLRNVC 246 (292)
Q Consensus 188 l~~~~r~~---~~i~l~~---p~~~~r~~i~~~~~~~~~~---~~~~~~~~l~~~~~------g------~~~~di~~l~ 246 (292)
+.. ||. ..+.|.. -+.+.+..+++...+.... ...++.+.+..+.. | ...+++..++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 887 664 5566643 2356666666644433211 23455444443222 1 2478999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
+.|..+|...+...++.+++.+|...
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHh
Confidence 99999999999999999999988754
No 206
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.30 E-value=1.2e-10 Score=111.61 Aligned_cols=229 Identities=16% Similarity=0.100 Sum_probs=138.0
Q ss_pred cccccHHHHHHHHHHhhcccCChHHH--------HhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------EEEE
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELF--------LRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FLKV 97 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~--------~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~~~~ 97 (292)
.|.|.+++|+.|.-.+..-....... ..-.++...+|||+|+||+|||++++++++..... +..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 47899999988876664321110000 00123445689999999999999999999865432 2222
Q ss_pred eccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh------CC--CCC
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------GF--DQL 169 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~--~~~ 169 (292)
.+..........+.. ...--+.......++++|||++.+ ....+..|.+++++-. +. .-+
T Consensus 531 gLTa~~~~~d~~tG~-~~le~GaLvlAdgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIKFNESDNGR-AMIQPGAVVLANGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhhhcccccCc-ccccCCcEEEcCCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcceecC
Confidence 222211100000000 000000011234579999999999 7888888888886532 10 122
Q ss_pred CCeEEEEEeCCCC-------------CCChhhcCCCCcceEE-EccCCCHHHHHHHHHHHHcCc----------------
Q 022768 170 GKVKMIMATNRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKIHAAGI---------------- 219 (292)
Q Consensus 170 ~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~i~~~~~~~~---------------- 219 (292)
.++.||+++|+.. .+++.+++ ||+..+ .++.|+.+.-..|..+.+...
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~ 676 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYD 676 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchh
Confidence 4789999999742 37789999 997665 557787765555544332100
Q ss_pred -----------------------------------cCCCCCCH---HHH-------HHH---------------------
Q 022768 220 -----------------------------------AKHGEIDY---EAV-------VKL--------------------- 233 (292)
Q Consensus 220 -----------------------------------~~~~~~~~---~~l-------~~~--------------------- 233 (292)
.+.+.+.- +.| -..
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~ 756 (915)
T PTZ00111 677 RSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDL 756 (915)
T ss_pred ccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence 00011110 111 110
Q ss_pred ---cC-----CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 234 ---AE-----GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 234 ---~~-----g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
.. -.++|.+..+++-|.+.|..+.+..|+.+|+.+|++-+..
T Consensus 757 ~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 757 YYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKS 806 (915)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence 01 1478999999999999999999999999999999998864
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.26 E-value=1.3e-10 Score=88.76 Aligned_cols=125 Identities=30% Similarity=0.460 Sum_probs=76.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCc---EEEEeccchhccc--------------cChHHHHHHHHHHHhhhCCCEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAIIDKY--------------IGESARLIREMFGYARDHQPCI 128 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~---~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i 128 (292)
+.+++|+||||+|||++++.++..+... ++.+++....... ...........+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999775 7777766543221 1223445567777777766799
Q ss_pred EEEcccccccCCcCCCCCcchHHHHHHHHHH---HHHhhCCCCCCCeEEEEEeCC-CCCCChhhcCCCCcceEEEccCC
Q 022768 129 IFMDEIDAIGGRRFSEGTSADREIQRTLMEL---LNQLDGFDQLGKVKMIMATNR-PDVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 129 l~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~~~~~~~vi~t~~~-~~~l~~~l~~~~r~~~~i~l~~p 203 (292)
|++||++.+.. ......... ..............+|+++|. ....+..+.. ++...+.+..+
T Consensus 82 iiiDei~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLD-----------AEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCC-----------HHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998842 111111111 000000022246778888886 2333444444 66666655443
No 208
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.26 E-value=3.8e-11 Score=106.51 Aligned_cols=229 Identities=17% Similarity=0.146 Sum_probs=144.1
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHH
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAR 112 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (292)
+|+|.+++|+.|.-.+..-..+ .....+.++-.-+|++.|.||+.||.|++++.+.....++...-+. .-+|-+..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~-~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK-SPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC-CCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccchh
Confidence 5799999999999988764322 1111222344567999999999999999999998766665543222 11222222
Q ss_pred HHHHHHHH-h-------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CC-------CCCCCeEEEE
Q 022768 113 LIREMFGY-A-------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-------DQLGKVKMIM 176 (292)
Q Consensus 113 ~~~~~~~~-~-------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-------~~~~~~~vi~ 176 (292)
.++.-... . -....+|-+|||||.+ +.....++.+.+++-. ++ .-+.++.+++
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM-----------~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKM-----------DESDRTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhh-----------hhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 22211110 0 0134578999999999 3333334444444321 11 2223678899
Q ss_pred EeCCCC-------------CCChhhcCCCCcceEEEc-cCCCHHHHHHHHHHHHcC--ccCCC-----CCCHHHHHHHc-
Q 022768 177 ATNRPD-------------VLDPALLRPGRLDRKIEI-PLPNEQSRMEILKIHAAG--IAKHG-----EIDYEAVVKLA- 234 (292)
Q Consensus 177 t~~~~~-------------~l~~~l~~~~r~~~~i~l-~~p~~~~r~~i~~~~~~~--~~~~~-----~~~~~~l~~~~- 234 (292)
++|+.. .++.+|++ ||+..+.+ ..|+.+.-..+.++...- ....+ .++++.+-...
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 988642 47889999 99876644 778877666666654431 11111 12322211110
Q ss_pred ------------------------------C----CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 235 ------------------------------E----GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 235 ------------------------------~----g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
. -.+++.+..+++-+.+.|..+....|..+|+.+|++-|...++
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~ 643 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKD 643 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhc
Confidence 0 2378999999999999999999999999999999999987544
No 209
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.26 E-value=3.8e-11 Score=88.90 Aligned_cols=111 Identities=26% Similarity=0.369 Sum_probs=62.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh--ccccCh----HHHHHHHHHHHhhh-CCCEEEEEcccccccCC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII--DKYIGE----SARLIREMFGYARD-HQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~ 140 (292)
|+||.|+||+|||++++++|+.++..+.++.+..-. +...|. ... ..|...+. --..|+++||+++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 689999999999999999999999999888764211 000000 000 00000000 00159999999998
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhC------CCCCCCeEEEEEeCCCC-----CCChhhcCCCCc
Q 022768 141 RFSEGTSADREIQRTLMELLNQLDG------FDQLGKVKMIMATNRPD-----VLDPALLRPGRL 194 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~ 194 (292)
....|.++++.+.+... ..-...++||+|.|+.+ .++.++++ ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 88899999999987531 22233588888888755 57888888 77
No 210
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.25 E-value=1.5e-10 Score=106.42 Aligned_cols=203 Identities=26% Similarity=0.339 Sum_probs=123.4
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~ 106 (292)
.+..++|.....+.+...+... .....+++|+|++|+||+++|+.+.... +.+++.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4556888888877777766542 2345679999999999999999998765 4589999998763221
Q ss_pred cChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC----
Q 022768 107 IGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD---- 167 (292)
Q Consensus 107 ~~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 167 (292)
.-..+|+. .....+++|||||++.| +...+..|..+++.....+
T Consensus 206 ------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 206 ------LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred ------HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCC
Confidence 11122221 11244689999999999 8889999998887532100
Q ss_pred --CCCCeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHcCc----cCC-CCCCHHH
Q 022768 168 --QLGKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAAGI----AKH-GEIDYEA 229 (292)
Q Consensus 168 --~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~~~----~~~-~~~~~~~ 229 (292)
...++.+|++++.. ..+.+.+.. |+ ..+.+..|...+|.+ ++..++... ... ..++.+.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 345 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDA 345 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 01257788888754 234444443 44 234455555555543 444444432 111 2355566
Q ss_pred HHHHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 230 VVKLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 230 l~~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
+..+...- |.++++++++.|... .....|+.+++
T Consensus 346 ~~~L~~~~wpgNvreL~~~i~~a~~~---~~~~~i~~~~l 382 (445)
T TIGR02915 346 LRALEAHAWPGNVRELENKVKRAVIM---AEGNQITAEDL 382 (445)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHc
Confidence 66554422 556666666666543 33335555554
No 211
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.25 E-value=4e-10 Score=103.88 Aligned_cols=211 Identities=15% Similarity=0.225 Sum_probs=123.6
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe-ccc
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-SSA 101 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~-~~~ 101 (292)
-+.+.|.+.++|.-....++++..++..... +..+.+.++|+||+|+||||+++.+|++++..+.+-. ...
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 3578899999999999999999999875321 1233556888999999999999999999988776632 222
Q ss_pred hh------ccccCh---HH------HHHHHH-HHHhh-----------hCCCEEEEEcccccccCCcCCCCCcchHHHHH
Q 022768 102 II------DKYIGE---SA------RLIREM-FGYAR-----------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (292)
Q Consensus 102 ~~------~~~~~~---~~------~~~~~~-~~~~~-----------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (292)
.. ..+.+. .. ...... +...+ ...+.||+|||+=.++... ......
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~ 154 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFRE 154 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHH
Confidence 10 001000 00 001111 11111 1246799999996653211 233444
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEEe-CC------C--------CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc
Q 022768 155 TLMELLNQLDGFDQLGKVKMIMAT-NR------P--------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (292)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~vi~t~-~~------~--------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~ 219 (292)
.|..++.. .....+++|+|- +. . ..+++.++...++ ..|.|.+-...-.++.+...+...
T Consensus 155 ~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 155 ALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 44444432 111155666661 11 1 1345666654344 788999988877777777665532
Q ss_pred -----cCCCCCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 022768 220 -----AKHGEID-YEAVVKLAEGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 220 -----~~~~~~~-~~~l~~~~~g~~~~di~~l~~~a~~~a~ 254 (292)
......+ .+.+..+..+ +.||||.++.....++.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~-s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAES-SNGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHh-cCchHHHHHHHHHHHhc
Confidence 1111112 1223333332 33499999999999997
No 212
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=2.3e-11 Score=96.54 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=72.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC----cEEEEeccchhccc--cChHHHHHHHHHHHhhhCCCEEEEEcccccccC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSSAIIDKY--IGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
-.+++|.||+|+|||.++++++..+.. +++.+++..+.... .......+...-........+||+|||+|....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 457999999999999999999999995 99999999887610 001111111111111122224999999999943
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCCeEEEEEeCCCC
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGF------DQLGKVKMIMATNRPD 182 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~vi~t~~~~~ 182 (292)
..+...+-.....+..|+.+++...-. -...++++|+|+|-..
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 311111112237788888888764211 1223788999998643
No 213
>PRK12377 putative replication protein; Provisional
Probab=99.22 E-value=9.2e-11 Score=98.36 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=90.3
Q ss_pred cCCCCCcccccc----ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEE
Q 022768 24 EDPGNVSYSAVG----GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLK 96 (292)
Q Consensus 24 ~~~~~~~~~~l~----g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~ 96 (292)
+.....+|++.. |...++.....++..+ . ....+++|+||||+|||||+.++++.+ +..++.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~-------~----~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~ 134 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADEL-------M----TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV 134 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHH-------H----hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 344556788775 3333455555555442 1 124579999999999999999999987 566777
Q ss_pred EeccchhccccChHHH--HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 97 VVSSAIIDKYIGESAR--LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
+...++.......... .....+... ....+|+|||+.... .....+..+..+++.-.. ....+
T Consensus 135 i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~---------~s~~~~~~l~~ii~~R~~----~~~pt 199 (248)
T PRK12377 135 VTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR---------ETKNEQVVLNQIIDRRTA----SMRSV 199 (248)
T ss_pred EEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---------CCHHHHHHHHHHHHHHHh----cCCCE
Confidence 7766655432111000 111222222 345799999996542 144567788888876432 23447
Q ss_pred EEEeCCCC-----CCChhhcCCCCc--ceEEEccCCC
Q 022768 175 IMATNRPD-----VLDPALLRPGRL--DRKIEIPLPN 204 (292)
Q Consensus 175 i~t~~~~~-----~l~~~l~~~~r~--~~~i~l~~p~ 204 (292)
|+|+|... .+..++.++.+. ...+.+...+
T Consensus 200 iitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 200 GMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred EEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 88888642 244455552221 2345555544
No 214
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-10 Score=97.97 Aligned_cols=86 Identities=28% Similarity=0.398 Sum_probs=64.1
Q ss_pred CEEEEEcccccccCCcCCCC-CcchHHHHHHHHHHHHHhh-----CCCCCCCeEEEEEe----CCCCCCChhhcCCCCcc
Q 022768 126 PCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQLD-----GFDQLGKVKMIMAT----NRPDVLDPALLRPGRLD 195 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~vi~t~----~~~~~l~~~l~~~~r~~ 195 (292)
.+|+||||+|.++.+...+. +-+-...|+.|+-++.--. +.-..+++.+|++. ..|+++-|.|+. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 47999999999987765443 3344567777777765432 33444578888875 457888899988 999
Q ss_pred eEEEccCCCHHHHHHHHH
Q 022768 196 RKIEIPLPNEQSRMEILK 213 (292)
Q Consensus 196 ~~i~l~~p~~~~r~~i~~ 213 (292)
..+.+...+.+....|+.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999988887665
No 215
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.5e-11 Score=105.14 Aligned_cols=216 Identities=22% Similarity=0.277 Sum_probs=122.8
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc----EEEEe-----
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----FLKVV----- 98 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----~~~~~----- 98 (292)
...|.|++|++.+++.+.-.... ++++|++||||||||++++-+...+..- .+++.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 45899999999999999888654 7899999999999999999988766321 11111
Q ss_pred ccchhc----------cccChHHHHHHHHHHH--------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHH
Q 022768 99 SSAIID----------KYIGESARLIREMFGY--------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (292)
Q Consensus 99 ~~~~~~----------~~~~~~~~~~~~~~~~--------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l 160 (292)
...+.. ...+.+. ....+... +...+.+||||||+-.+ ...+.+.|.+-|
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef-----------~~~iLe~LR~PL 307 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEF-----------KRSILEALREPL 307 (490)
T ss_pred cccccccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchh-----------hHHHHHHHhCcc
Confidence 000000 0000100 01111111 11134589999998555 443333333333
Q ss_pred HHhhC--------CCCCCCeEEEEEeCCC-----------------------CCCChhhcCCCCcceEEEccCCCHHHHH
Q 022768 161 NQLDG--------FDQLGKVKMIMATNRP-----------------------DVLDPALLRPGRLDRKIEIPLPNEQSRM 209 (292)
Q Consensus 161 ~~~~~--------~~~~~~~~vi~t~~~~-----------------------~~l~~~l~~~~r~~~~i~l~~p~~~~r~ 209 (292)
+...- ..-.-++.+|+++|.. .+++..+++ |++..+.++.++..++.
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~ 385 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELI 385 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhh
Confidence 22110 0111156777887742 135556777 88888888776533221
Q ss_pred --------------HHHHHHHc----Ccc--CCCCCCHHHHHH----------------HcCCCCHHHHHHHHHHHHHHH
Q 022768 210 --------------EILKIHAA----GIA--KHGEIDYEAVVK----------------LAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 210 --------------~i~~~~~~----~~~--~~~~~~~~~l~~----------------~~~g~~~~di~~l~~~a~~~a 253 (292)
.+++.+.. ... .+..++-..|.+ ..-++|.+....+++-|..+|
T Consensus 386 ~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiA 465 (490)
T COG0606 386 RQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIA 465 (490)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 12221111 111 122222222222 122567788888888888888
Q ss_pred HHhcCCcccHHHHHHHHHH
Q 022768 254 IRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~~ 272 (292)
-..+...|...++.+|++.
T Consensus 466 DL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 466 DLEGSEQIERSHLAEAISY 484 (490)
T ss_pred cccCcchhhHHHHHHHHhh
Confidence 8888888999999988864
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.19 E-value=7e-10 Score=96.78 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=106.4
Q ss_pred cc-cccccHHHHHHHHHHhhcccCChHHHHhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCC-------cEEEEec--
Q 022768 31 YS-AVGGLSDQIRELRESIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDA-------NFLKVVS-- 99 (292)
Q Consensus 31 ~~-~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vll~G~~G~GKT~l~~~la~~l~~-------~~~~~~~-- 99 (292)
|+ +++|+++++.++.+++..... |. .....++|+||||+||||+++++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 45 799999999999998876421 12 23466899999999999999999999865 6666654
Q ss_pred --cchhccccChHHHH----------------------------------------------------------------
Q 022768 100 --SAIIDKYIGESARL---------------------------------------------------------------- 113 (292)
Q Consensus 100 --~~~~~~~~~~~~~~---------------------------------------------------------------- 113 (292)
+.+.....+-....
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 22211100000000
Q ss_pred --HHHHHHHh----------------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC--
Q 022768 114 --IREMFGYA----------------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-- 167 (292)
Q Consensus 114 --~~~~~~~~----------------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 167 (292)
+..+.+.+ .....+++-|+|+... +.+.+..|+..+++..-.-
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecCC
Confidence 00000000 0023478888888777 7778888888877643211
Q ss_pred ----CCCCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCC-CHHHHHHHHHHHHcC
Q 022768 168 ----QLGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHAAG 218 (292)
Q Consensus 168 ----~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p-~~~~r~~i~~~~~~~ 218 (292)
-.-..++|+++|..+ +..+++++ || ..++++++ +.++-.+|.+..+..
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~-~~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RI-IKVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ce-EEEeCCCcCCHHHHHHHHHHHhcc
Confidence 111467888888762 56788988 88 47888887 557777888877753
No 217
>PRK08116 hypothetical protein; Validated
Probab=99.19 E-value=1.8e-10 Score=98.25 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=76.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH----HHHHHHHHHHhhhCCCEEEEEccccccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES----ARLIREMFGYARDHQPCIIFMDEIDAIG 138 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~il~lDe~d~l~ 138 (292)
+.+++|+|++|+|||+|+.++++.+ +.+++.++..++........ ......++.... ...+|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4579999999999999999999986 67788888766554321110 011112232222 3369999999542
Q ss_pred CCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC-CC----CChhhcCCCCc---ceEEEccCCCH
Q 022768 139 GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DV----LDPALLRPGRL---DRKIEIPLPNE 205 (292)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~-~~----l~~~l~~~~r~---~~~i~l~~p~~ 205 (292)
......+..+..+++.... .+..+|+|+|.+ .. ++.++.+ |+ ...+.+..++.
T Consensus 191 --------~~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --------RDTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1145566777777776421 233478888764 22 3456666 52 35667777764
No 218
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.19 E-value=3.6e-10 Score=104.53 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=127.9
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~ 106 (292)
++.+++|.....+++.+.+... ......++|.|++||||+++|+++.... +.+++.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 4567889888888877776543 2446779999999999999999999876 4689999998763211
Q ss_pred cChHHHHHHHHHHHh---------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC----
Q 022768 107 IGESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD---- 167 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~---------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 167 (292)
.-..+|+.. ....++.|||||++.+ +...+..|..+++......
T Consensus 205 ------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 ------IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred ------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 111233211 1234579999999999 8888888888887532110
Q ss_pred --CCCCeEEEEEeCCC-------CCCChhhcCCCCc-ceEEEccCCCH--HHHHHHHHHHHcCc----cCC-CCCCHHHH
Q 022768 168 --QLGKVKMIMATNRP-------DVLDPALLRPGRL-DRKIEIPLPNE--QSRMEILKIHAAGI----AKH-GEIDYEAV 230 (292)
Q Consensus 168 --~~~~~~vi~t~~~~-------~~l~~~l~~~~r~-~~~i~l~~p~~--~~r~~i~~~~~~~~----~~~-~~~~~~~l 230 (292)
...++.+|+|++.. ..+.+.+.. |+ ...|.+|+... ++...++.+++... ... ..++.+.+
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 01246788888653 134455554 55 23444444422 23334555555432 111 23555666
Q ss_pred HHHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 231 VKLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 231 ~~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
..+...- |.++++++++.+. .......|+.+++...+
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~---~~~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLT---VMAAGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHH---HhCCCCcccHHHCcHhh
Confidence 6655533 4455555555554 44445578888876544
No 219
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=4.5e-10 Score=100.53 Aligned_cols=144 Identities=24% Similarity=0.354 Sum_probs=86.0
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------EEEEecc---
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FLKVVSS--- 100 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~~~~~~~--- 100 (292)
++++.+.++..+.+...+. .+.+++|+||||||||++|+.+|..+... .+.++..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5667777777777766654 25689999999999999999999987431 1222211
Q ss_pred -chhccccCh-H-----HHHHHHHHHHhhh--CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH---------
Q 022768 101 -AIIDKYIGE-S-----ARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ--------- 162 (292)
Q Consensus 101 -~~~~~~~~~-~-----~~~~~~~~~~~~~--~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~--------- 162 (292)
++...+... . ......+...+.. ..|.+|+|||+++--. ......+..+++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 111111000 0 0112233334443 3578999999987621 1122222333321
Q ss_pred --------hhCCCCCCCeEEEEEeCCCC----CCChhhcCCCCcceEEEccC
Q 022768 163 --------LDGFDQLGKVKMIMATNRPD----VLDPALLRPGRLDRKIEIPL 202 (292)
Q Consensus 163 --------~~~~~~~~~~~vi~t~~~~~----~l~~~l~~~~r~~~~i~l~~ 202 (292)
.+.+..+.++.+|+|+|..+ .++.++++ || ..+.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 01234456899999999876 68999999 88 4456654
No 220
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.18 E-value=9.2e-10 Score=100.28 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=145.8
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc----
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY---- 106 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~---- 106 (292)
|..+.|.+.+|.-|.-.+-.-...... ....++..-+|+|.|.||+|||.+++++++-++..++...-..-...+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 456789999998887665432221111 233345567899999999999999999999887776654322211100
Q ss_pred c--ChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CCCCC-------CCeEEEE
Q 022768 107 I--GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GFDQL-------GKVKMIM 176 (292)
Q Consensus 107 ~--~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~-------~~~~vi~ 176 (292)
+ +.+.+..-+ .+.......+|-+|||||.+ +...+.++.+.+++-. ++.+. .+..|||
T Consensus 423 vkD~esgdf~iE-AGALmLADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 423 VKDEESGDFTIE-AGALMLADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred EecCCCCceeee-cCcEEEccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecchhhhhh
Confidence 0 000000000 00112234589999999999 6767778888777632 22211 2566788
Q ss_pred EeCCCC-------------CCChhhcCCCCcceEE-EccCCCHHHHHHHHHHHHcCc-cC--------------------
Q 022768 177 ATNRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKIHAAGI-AK-------------------- 221 (292)
Q Consensus 177 t~~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~i~~~~~~~~-~~-------------------- 221 (292)
++|+.. .+++++.+ ||+..+ .+..|++..-..|-++.+... .+
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~ 568 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIR 568 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHH
Confidence 888642 37789999 998755 668888877666666554310 00
Q ss_pred -----CCCCCH----------HHHHHHc--------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 222 -----HGEIDY----------EAVVKLA--------EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 222 -----~~~~~~----------~~l~~~~--------~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
.+.+.. ..|-... -..+.+++..+++-+.+.|...-...+|.+++.+|.+-++..
T Consensus 569 yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~S 646 (764)
T KOG0480|consen 569 YARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKS 646 (764)
T ss_pred HHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh
Confidence 000110 0011111 134789999999999999999999999999999999998865
No 221
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=2e-10 Score=95.82 Aligned_cols=186 Identities=22% Similarity=0.365 Sum_probs=100.2
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---EEEEeccchhc-----c
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAIID-----K 105 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~~~~~~~~~~~-----~ 105 (292)
.+|++...+.|.+++.. .+...++|+||+|+|||++++.+...+... .+++....... .
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 36889999999887754 346789999999999999999999988332 11111100000 0
Q ss_pred c------------------------------cChHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHH
Q 022768 106 Y------------------------------IGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (292)
Q Consensus 106 ~------------------------------~~~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (292)
. .......+..++...... ...+|+|||++.+.. ..........
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~-----~~~~~~~~~~ 142 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAI-----ASEEDKDFLK 142 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGB-----CTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhh-----cccchHHHHH
Confidence 0 001122334444444333 238999999999950 0112345555
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEEeCCCCC------CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccC--CCCCC
Q 022768 155 TLMELLNQLDGFDQLGKVKMIMATNRPDV------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK--HGEID 226 (292)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~vi~t~~~~~~------l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~--~~~~~ 226 (292)
.+..+++.. ....++.+|+++..... -...+.. |+.. +.+++.+.++..+++...+..... ..+.+
T Consensus 143 ~l~~~~~~~---~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 143 SLRSLLDSL---LSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHhhc---cccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 566655542 23346666666554211 1122333 6645 999999999999999987765411 13445
Q ss_pred HHHHHHHcCCCCHHHHHH
Q 022768 227 YEAVVKLAEGFNGADLRN 244 (292)
Q Consensus 227 ~~~l~~~~~g~~~~di~~ 244 (292)
++.+...+.| .|+.|..
T Consensus 217 ~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 217 IEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp HHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHhCC-CHHHHhc
Confidence 6777788888 6666654
No 222
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=5.2e-10 Score=97.76 Aligned_cols=132 Identities=19% Similarity=0.346 Sum_probs=92.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCc-------------------------EEEEeccch---hccc-cChHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN-------------------------FLKVVSSAI---IDKY-IGESARLI 114 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------------------------~~~~~~~~~---~~~~-~~~~~~~~ 114 (292)
.-++.+||+||+|+|||++++.+|+.+.+. ++.+....- .++. ..-..+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 346679999999999999999999987431 222322110 0000 00123445
Q ss_pred HHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcC
Q 022768 115 REMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR 190 (292)
Q Consensus 115 ~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~ 190 (292)
+.+...+.. ....|++||+++.+ +...+..+...+++.. .++.+|.+++.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHH
Confidence 555555443 34579999999999 8888888888887632 356788899999999999998
Q ss_pred CCCcceEEEccCCCHHHHHHHHHH
Q 022768 191 PGRLDRKIEIPLPNEQSRMEILKI 214 (292)
Q Consensus 191 ~~r~~~~i~l~~p~~~~r~~i~~~ 214 (292)
|+ ..+.|++|+.++..+.+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 7789999998887776654
No 223
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.16 E-value=1.7e-09 Score=101.21 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=132.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccchhccccChH--HHHHHHH---H--HHhhhCCCEEEEEcccccc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGES--ARLIREM---F--GYARDHQPCIIFMDEIDAI 137 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~~~~~~~~~~--~~~~~~~---~--~~~~~~~~~il~lDe~d~l 137 (292)
.+|+|.|++|+|||++++.++..+.. ||..+....-....+|.. +..+..- + ......+.+||||||++.+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 57999999999999999999999865 776665544444444432 1111110 0 0111234589999999998
Q ss_pred cCCcCCCCCcchHHHHHHHHHHHHHhh--------CCCCCCCeEEEEEeCCC---CCCChhhcCCCCcceEEEccCCCHH
Q 022768 138 GGRRFSEGTSADREIQRTLMELLNQLD--------GFDQLGKVKMIMATNRP---DVLDPALLRPGRLDRKIEIPLPNEQ 206 (292)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (292)
+...+..|.+.+.... ...-..++++|++.|.. ..+++.+++ ||...+.+.+++..
T Consensus 106 -----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~ 172 (584)
T PRK13406 106 -----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALR 172 (584)
T ss_pred -----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChH
Confidence 8888999988887531 11222368888874332 348889999 99999999988754
Q ss_pred HHH-------HHHH--HHHcCccCCCCCCHHHHHHH--cCCC-CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 207 SRM-------EILK--IHAAGIAKHGEIDYEAVVKL--AEGF-NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 207 ~r~-------~i~~--~~~~~~~~~~~~~~~~l~~~--~~g~-~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
+.. .|.. ..+.+..++ +..+..++.. .-|. +.+--..+++.|...|..+++..|+.+||.+|+..+-
T Consensus 173 ~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 173 DAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 322 2322 222221111 1112222221 2354 7788889999999999999999999999999999988
Q ss_pred hhhh
Q 022768 275 EAKK 278 (292)
Q Consensus 275 ~~~~ 278 (292)
.+..
T Consensus 252 ~hR~ 255 (584)
T PRK13406 252 APRA 255 (584)
T ss_pred Hhhc
Confidence 7655
No 224
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.15 E-value=1e-09 Score=101.21 Aligned_cols=206 Identities=25% Similarity=0.306 Sum_probs=122.4
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI 107 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~ 107 (292)
+..++|.......+.+.+... ......++++|++|+||+++++++.... +.+++.++|..+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~- 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL- 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH-
Confidence 445677766666665555443 2345679999999999999999998764 4689999998763211
Q ss_pred ChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC--C---
Q 022768 108 GESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--D--- 167 (292)
Q Consensus 108 ~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~--- 167 (292)
.-..+|.. ......++|||||++.+ +...+..|..++...... .
T Consensus 210 -----~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 210 -----LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred -----HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 11122221 11234579999999999 788888888888653210 0
Q ss_pred -CCCCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHcCcc----CC-CCCCHHHH
Q 022768 168 -QLGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAAGIA----KH-GEIDYEAV 230 (292)
Q Consensus 168 -~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~~~~----~~-~~~~~~~l 230 (292)
...++.+|++++..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++.... .. ..++.+.+
T Consensus 274 ~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 350 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350 (457)
T ss_pred eeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 012478888887531 23333333 33 235566666665543 4444444321 11 23556666
Q ss_pred HHHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 231 VKLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 231 ~~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
..+...- +.+++.++++.|.. ......|+.+++...+
T Consensus 351 ~~L~~~~wpgNv~eL~~~~~~~~~---~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 351 SLLTAWSWPGNIRELSNVIERAVV---MNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHH---hCCCCcccHHHChHhh
Confidence 5555422 45566666666553 3344567777776443
No 225
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.15 E-value=9.4e-10 Score=100.95 Aligned_cols=227 Identities=21% Similarity=0.190 Sum_probs=136.4
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh-cc-----c
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-DK-----Y 106 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~-~~-----~ 106 (292)
|+|.+++|+-|.-.+-. ...+.+..-| ....-+||++|.||+|||.+++++.+.+....+.-.-..-. +. .
T Consensus 431 Iye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 68888888887766532 1112222221 33456899999999999999999999886655442211100 00 0
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC-C-------CCCCCeEEEEEe
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-F-------DQLGKVKMIMAT 178 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-------~~~~~~~vi~t~ 178 (292)
.+++.+.+-+ -...-....++-+|||||.| .......|.+.+++-+. + .-+.++.|||++
T Consensus 509 d~dtkqlVLe-sGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 509 DPDTRQLVLE-SGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred cCccceeeee-cCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 0011111100 00111244579999999999 66777788888776321 1 122367899999
Q ss_pred CCCC-------------CCChhhcCCCCcceEE-EccCCCHHHHHHHHH----HHHcCcc--------------------
Q 022768 179 NRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILK----IHAAGIA-------------------- 220 (292)
Q Consensus 179 ~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~i~~----~~~~~~~-------------------- 220 (292)
|+.. .+++.|++ ||+.++ -+..||...-+.|.. .|+....
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yAr 654 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYAR 654 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHh
Confidence 9532 37789999 998766 558887763333333 2222110
Q ss_pred --CCCCCCHHHHH----------HHc--CC---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 221 --KHGEIDYEAVV----------KLA--EG---FNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 221 --~~~~~~~~~l~----------~~~--~g---~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
+...+..+..- ... .| .+++.+..+++.+.+.|..+....+...|+++|..-....
T Consensus 655 k~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 655 KNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred ccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 11111111100 000 12 2678999999999999999999999999999999877754
No 226
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.6e-10 Score=98.99 Aligned_cols=143 Identities=29% Similarity=0.364 Sum_probs=96.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh-ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~ 144 (292)
-..+|+.||||+|||+||..+|...+.||+.+-..+-. +......-..++.+|..++...-++|++|+++.|..-.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 44599999999999999999999999999987655443 33333344568899999999888999999999986322
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCCC-CeEEEEEeCCCCCCCh-hhcCCCCcceEEEccCCCH-HHHHHHHHH
Q 022768 145 GTSADREIQRTLMELLNQLDGFDQLG-KVKMIMATNRPDVLDP-ALLRPGRLDRKIEIPLPNE-QSRMEILKI 214 (292)
Q Consensus 145 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~vi~t~~~~~~l~~-~l~~~~r~~~~i~l~~p~~-~~r~~i~~~ 214 (292)
.-+.+..+..+..++-.+....+.+ +.+|++||+..+-+.. .+.. .|+.++.+|..+. ++...+++.
T Consensus 615 -pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 -PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 1122333344444444444434444 4556666665443322 3444 7888888888765 666666654
No 227
>PRK15115 response regulator GlrR; Provisional
Probab=99.11 E-value=1.7e-09 Score=99.37 Aligned_cols=204 Identities=23% Similarity=0.276 Sum_probs=119.3
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccCh
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~ 109 (292)
.++|.....+++.+.+... ......++|+|++|+||+++|+.+.+.. +.+++.++|..+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~--- 200 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL--- 200 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH---
Confidence 4566665555555444332 2335679999999999999999998875 4689999998763221
Q ss_pred HHHHHHHHHHHh---------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------C
Q 022768 110 SARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------Q 168 (292)
Q Consensus 110 ~~~~~~~~~~~~---------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~ 168 (292)
.-..+|... .....++|||||+|.| +...+..|..+++...... .
T Consensus 201 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 201 ---LESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ---HHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 111223211 1234579999999999 8888899988887532100 0
Q ss_pred CCCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHHH----HHHHHHcCc----cCC-CCCCHHHHHH
Q 022768 169 LGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAAGI----AKH-GEIDYEAVVK 232 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~~~~~~~~----~~~-~~~~~~~l~~ 232 (292)
..++.+|+|++..- .+.+.+.. |+ ..+.+..|...+|.+ ++..++... ... ..++.+.+..
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 11577888887430 12222222 23 245666676777653 445554432 111 2355666665
Q ss_pred HcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 233 LAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 233 ~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+...- |.++++++++.|. .......|+.+++...+
T Consensus 344 L~~~~WpgNvreL~~~i~~~~---~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 344 LMTASWPGNVRQLVNVIEQCV---ALTSSPVISDALVEQAL 381 (444)
T ss_pred HHhCCCCChHHHHHHHHHHHH---HhCCCCccChhhhhhhh
Confidence 55422 4455555555554 33444567777775444
No 228
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.11 E-value=6e-10 Score=104.42 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=138.6
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHh-cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChH
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLR-VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGES 110 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~ 110 (292)
..+.|.+++++.|.-.+-.-... ...+ -.++..-|+||.|.||+|||.+++.+++.+...++...-+.-. .|-+
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~---~GLT 360 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA---AGLT 360 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc---cCce
Confidence 34789999988887766432111 0000 0122245799999999999999999999887665543211110 1111
Q ss_pred HHHHH-----HHHHHh---hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CCCC-------CCCeEE
Q 022768 111 ARLIR-----EMFGYA---RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GFDQ-------LGKVKM 174 (292)
Q Consensus 111 ~~~~~-----~~~~~~---~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-------~~~~~v 174 (292)
....+ ++.-.+ -...++|.+|||+|.+ +.....++.+.+.+-. .+.+ +.++.+
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 11111 110011 1245689999999998 7777788888887642 2222 226778
Q ss_pred EEEeCCCC-------------CCChhhcCCCCcceEEEc-cCCCHHHHHHHHHHHHcCc---------------------
Q 022768 175 IMATNRPD-------------VLDPALLRPGRLDRKIEI-PLPNEQSRMEILKIHAAGI--------------------- 219 (292)
Q Consensus 175 i~t~~~~~-------------~l~~~l~~~~r~~~~i~l-~~p~~~~r~~i~~~~~~~~--------------------- 219 (292)
+|++|+.. .+++.+++ ||+..+-+ ..|+.+.-..+..+.+...
T Consensus 430 LAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~ 507 (682)
T COG1241 430 LAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERD 507 (682)
T ss_pred hhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCc
Confidence 88998754 37788999 99886644 5566543333322222110
Q ss_pred -------------cCCCCCC---HHHHHH-----Hc----------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 022768 220 -------------AKHGEID---YEAVVK-----LA----------EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK 268 (292)
Q Consensus 220 -------------~~~~~~~---~~~l~~-----~~----------~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~ 268 (292)
...+.+. .+.|.. +. -..+.+++..+++-|.+.|..+.+..|+.+|+.+
T Consensus 508 ~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~e 587 (682)
T COG1241 508 FELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDE 587 (682)
T ss_pred HHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 0101111 111111 11 1146899999999999999999999999999999
Q ss_pred HHHHHhhh
Q 022768 269 AVRKLNEA 276 (292)
Q Consensus 269 a~~~~~~~ 276 (292)
|++-+...
T Consensus 588 Ai~lv~~~ 595 (682)
T COG1241 588 AIRLVDFS 595 (682)
T ss_pred HHHHHHHH
Confidence 99998853
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=8.5e-10 Score=92.33 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=80.2
Q ss_pred cCCCCCcccccccc----HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEE
Q 022768 24 EDPGNVSYSAVGGL----SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLK 96 (292)
Q Consensus 24 ~~~~~~~~~~l~g~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~ 96 (292)
+.....+|++..-. ..++..+..++..+ .....+++|+|++|+|||+++.++++.+ +..++.
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~-----------~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~ 132 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEF-----------DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLI 132 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhh-----------ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34456788887532 23444444444332 0113479999999999999999999988 667888
Q ss_pred EeccchhccccChH---HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 97 VVSSAIIDKYIGES---ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 97 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
+...++........ ......++.... ...+|+|||++... ........+..+++.-.. ....
T Consensus 133 it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry~----~~~~ 197 (244)
T PRK07952 133 ITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRSS----SKRP 197 (244)
T ss_pred EEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHHh----CCCC
Confidence 87766654322111 011122333322 45799999997752 134445667777775321 2345
Q ss_pred EEEEeCCC
Q 022768 174 MIMATNRP 181 (292)
Q Consensus 174 vi~t~~~~ 181 (292)
+|+|+|..
T Consensus 198 tiitSNl~ 205 (244)
T PRK07952 198 TGMLTNSN 205 (244)
T ss_pred EEEeCCCC
Confidence 78888864
No 230
>PRK08181 transposase; Validated
Probab=99.09 E-value=7.7e-10 Score=93.93 Aligned_cols=128 Identities=20% Similarity=0.330 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH-HHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
.+.+++|+||+|+|||+++.++++++ +..++++...++........ .......+... ..+.+|+|||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC-
Confidence 46789999999999999999999755 66788887776655432110 01112223322 2447999999987632
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC-C---------CChhhcCCCCc---ceEEEccCCCHHH
Q 022768 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD-V---------LDPALLRPGRL---DRKIEIPLPNEQS 207 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~-~---------l~~~l~~~~r~---~~~i~l~~p~~~~ 207 (292)
+...+..+.++++.... +..+|+|+|.+. . +..++.+ |+ ...+.+...+...
T Consensus 182 --------~~~~~~~Lf~lin~R~~-----~~s~IiTSN~~~~~w~~~~~D~~~a~aild--RL~h~~~~i~~~g~s~R~ 246 (269)
T PRK08181 182 --------DQAETSVLFELISARYE-----RRSILITANQPFGEWNRVFPDPAMTLAAVD--RLVHHATIFEMNVESYRR 246 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh-----CCCEEEEcCCCHHHHHHhcCCccchhhHHH--hhhcCceEEecCCccchh
Confidence 45566788888876542 124788888652 1 2233344 33 3456666666554
Q ss_pred HHH
Q 022768 208 RME 210 (292)
Q Consensus 208 r~~ 210 (292)
+..
T Consensus 247 ~~~ 249 (269)
T PRK08181 247 RTA 249 (269)
T ss_pred HHH
Confidence 443
No 231
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.09 E-value=4.4e-09 Score=94.61 Aligned_cols=213 Identities=14% Similarity=0.160 Sum_probs=119.9
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc---
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS--- 100 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~--- 100 (292)
+++.|.+.++|.=....+.+++.++..... + . ....++.+||+||+|+||||+++.+++++|..+.+-...
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~----~-~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~ 147 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQWLKQVAE----F-T-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINL 147 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHHHHHHHHH----h-c-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccc
Confidence 366777888888888888888888772100 0 0 122356788999999999999999999999887664411
Q ss_pred ----chhccccChH---HHHH---HHHHHHh------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHH
Q 022768 101 ----AIIDKYIGES---ARLI---REMFGYA------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 158 (292)
Q Consensus 101 ----~~~~~~~~~~---~~~~---~~~~~~~------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ 158 (292)
.+-+...+.. ...+ ......+ ....+.+|++||+=..+.. ...+.+.+
T Consensus 148 ~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~----------d~~~~f~e 217 (634)
T KOG1970|consen 148 KEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR----------DDSETFRE 217 (634)
T ss_pred cccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh----------hhHHHHHH
Confidence 1111000000 1111 1111111 1134569999998655321 12233333
Q ss_pred HHHHhhCCCCCCCeEEEEEeC-CCCCCCh------hhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCC----CCCH
Q 022768 159 LLNQLDGFDQLGKVKMIMATN-RPDVLDP------ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDY 227 (292)
Q Consensus 159 ~l~~~~~~~~~~~~~vi~t~~-~~~~l~~------~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~----~~~~ 227 (292)
.|..+...... .+++|+|-. .....++ .+.-..|. ..|.|.+-...-.++.++.++....... ..+.
T Consensus 218 vL~~y~s~g~~-PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~ 295 (634)
T KOG1970|consen 218 VLRLYVSIGRC-PLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDT 295 (634)
T ss_pred HHHHHHhcCCC-cEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchh
Confidence 33333222222 345555532 2222222 22222244 6789988888888888887776432221 1234
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 228 EAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 228 ~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
..+..+..+ ++||||.++......+.+
T Consensus 296 ~~v~~i~~~-s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 296 AEVELICQG-SGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHHHHHh-cCccHHHHHhHhhhhccc
Confidence 445555555 555999999999988733
No 232
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.08 E-value=2.4e-09 Score=98.91 Aligned_cols=207 Identities=24% Similarity=0.310 Sum_probs=126.3
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI 107 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~ 107 (292)
...++|.....+++.+.+... ......+++.|.+||||+++++++.... +.+++.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 345788877777777666542 2345679999999999999999998765 46899999887632211
Q ss_pred ChHHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-----
Q 022768 108 GESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD----- 167 (292)
Q Consensus 108 ~~~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----- 167 (292)
-..+|+. .....++.|||||++.+ +...+..|..++.......
T Consensus 202 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 202 ------ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred ------HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCc
Confidence 1122221 11234689999999999 7888888888886532100
Q ss_pred -CCCCeEEEEEeCCCC-------CCChhhcCCCCcc-eEEEccCCC--HHHHHHHHHHHHcCcc----CC-CCCCHHHHH
Q 022768 168 -QLGKVKMIMATNRPD-------VLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGIA----KH-GEIDYEAVV 231 (292)
Q Consensus 168 -~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~i~~~~~~~~~----~~-~~~~~~~l~ 231 (292)
...++.+|++++..- ...+.+.. |+. ..|.+|+.. .++...++..++.... .. ..++.+.+.
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 342 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALE 342 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 112567888876531 23344444 442 355666654 3455556665554321 11 235566666
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 232 KLAEGF---NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 232 ~~~~g~---~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
.+...- |.++++++++.+.. ......|+.+++...+
T Consensus 343 ~L~~~~wpgNvreL~~~~~~~~~---~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 343 RLKQLRWPGNVRQLENLCRWLTV---MASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHhCCCCChHHHHHHHHHHHHH---hCCCCcccHHhchHHH
Confidence 655432 44566666666554 3344568888876555
No 233
>PF13173 AAA_14: AAA domain
Probab=99.07 E-value=1.2e-09 Score=82.86 Aligned_cols=119 Identities=24% Similarity=0.324 Sum_probs=75.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCC
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNID--ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~ 144 (292)
..++|.||+|+||||+++.+++.+. ..++++++.+.......... +...+.......+.+|+|||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999999876 77888887765432111111 222222222225679999999987
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC----ChhhcCCCCcceEEEccCCCHHHH
Q 022768 145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL----DPALLRPGRLDRKIEIPLPNEQSR 208 (292)
Q Consensus 145 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l----~~~l~~~~r~~~~i~l~~p~~~~r 208 (292)
+.+...+..+.+.. .++.+|+|++....+ ...+.. |+ ..+++.+++..|.
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~g--r~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAG--RV-IEIELYPLSFREF 127 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCC--eE-EEEEECCCCHHHh
Confidence 23455555555431 355677777654433 333443 55 5778888887663
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.07 E-value=5.4e-10 Score=85.88 Aligned_cols=106 Identities=31% Similarity=0.522 Sum_probs=74.3
Q ss_pred cccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEEeccchhccccChHH
Q 022768 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSSAIIDKYIGESA 111 (292)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~~~~~~~~~~~~~~~ 111 (292)
+|.....+++.+.+... .....+|+|+|++||||+++|+++...... +++.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 46677777887777764 245678999999999999999999987754 44444444422
Q ss_pred HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 112 ~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
..++..+ .++.|+|+|+|.+ +...+..|..++.... ..++.+|++++.
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 2333333 5589999999999 8899999999888732 346678887764
No 235
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.06 E-value=2.6e-11 Score=106.52 Aligned_cols=227 Identities=19% Similarity=0.194 Sum_probs=124.4
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc----hhccccC
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA----IIDKYIG 108 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~----~~~~~~~ 108 (292)
.|.|.+.+|..+.-.+......... ..-..+..-++||+|.||+|||.+++.+++.....++...... +......
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 3689998888886665442211000 0001234568999999999999999998876655443322111 1000000
Q ss_pred ---hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CCCC-------CCCeEEEEE
Q 022768 109 ---ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GFDQ-------LGKVKMIMA 177 (292)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-------~~~~~vi~t 177 (292)
..+..+. .+..-....+|++|||+|.+ .......|.+.+++-. .+.. +.++.|+++
T Consensus 104 d~~~~~~~le--aGalvlad~GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa 170 (331)
T PF00493_consen 104 DPVTGEWVLE--AGALVLADGGICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAA 170 (331)
T ss_dssp CGGTSSECEE--E-HHHHCTTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEE
T ss_pred ccccceeEEe--CCchhcccCceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHH
Confidence 0000000 00111234589999999999 6667788888887632 1111 226889999
Q ss_pred eCCCC-------------CCChhhcCCCCcceEEEc-cCCCHHHHHHHHHHHHcCccCCC------------CCCH----
Q 022768 178 TNRPD-------------VLDPALLRPGRLDRKIEI-PLPNEQSRMEILKIHAAGIAKHG------------EIDY---- 227 (292)
Q Consensus 178 ~~~~~-------------~l~~~l~~~~r~~~~i~l-~~p~~~~r~~i~~~~~~~~~~~~------------~~~~---- 227 (292)
+|+.. .+++.+.+ ||+..+.+ ..++.+.-..+.++.+....... .++.
T Consensus 171 ~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr 248 (331)
T PF00493_consen 171 ANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLR 248 (331)
T ss_dssp E--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCH
T ss_pred HhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHH
Confidence 98754 36678888 99988765 66776666666665554221110 1111
Q ss_pred -------------------HHHHHHc-------------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 228 -------------------EAVVKLA-------------EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 228 -------------------~~l~~~~-------------~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+.+.... ...+++.+..+++-|.+.|..+.+..|+.+|+..|+.-+..
T Consensus 249 ~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 249 KYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 1111111 02356788899999999999999999999999999987764
No 236
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.1e-08 Score=87.13 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc----------------EEEEeccch
Q 022768 39 DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----------------FLKVVSSAI 102 (292)
Q Consensus 39 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----------------~~~~~~~~~ 102 (292)
...+.|...+..- .-++.+||+||.|+||+++|..+|+.+-+. +..+....-
T Consensus 4 ~~~~~L~~~i~~~------------rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRDQ------------KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK 71 (290)
T ss_pred HHHHHHHHHHHcC------------CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC
Confidence 3456666666542 446789999999999999999999987542 111111100
Q ss_pred hccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe
Q 022768 103 IDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~ 178 (292)
+.. -..+.++.+..... .....|++||++|.+ ..+.+..|+.++++ +++++++|..|
T Consensus 72 -~~~--I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~ 132 (290)
T PRK05917 72 -GRL--HSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTS 132 (290)
T ss_pred -CCc--CcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEe
Confidence 000 12233344433332 234579999999999 77777777777764 55688899999
Q ss_pred CCCCCCChhhcCCCCcceEEEccCC
Q 022768 179 NRPDVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 179 ~~~~~l~~~l~~~~r~~~~i~l~~p 203 (292)
+.++.+.+.++| |+ ..+.|+++
T Consensus 133 ~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cc-eEEEccch
Confidence 999999999999 77 66777765
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=1.9e-09 Score=92.04 Aligned_cols=143 Identities=20% Similarity=0.380 Sum_probs=80.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhh-----------hCCCEEEEEcc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR-----------DHQPCIIFMDE 133 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~il~lDe 133 (292)
.++++||+||+|+|||.+++.+...+...-+.+....+.. ..+...++....... ..+..|+||||
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~---~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA---QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDD 108 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T---THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEET
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC---CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecc
Confidence 4789999999999999999998887754332221111111 122333333222111 13446999999
Q ss_pred cccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-------CCCCeEEEEEeCCCC---CCChhhcCCCCcceEEEccCC
Q 022768 134 IDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-------QLGKVKMIMATNRPD---VLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 134 ~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~l~~p 203 (292)
++.-...+. +.....+.|.++++....+. .-.++.+|+++++.. .+++++.+ .| ..+.++.|
T Consensus 109 lN~p~~d~y-----gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p 180 (272)
T PF12775_consen 109 LNMPQPDKY-----GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYP 180 (272)
T ss_dssp TT-S---TT-----S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----
T ss_pred cCCCCCCCC-----CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCC
Confidence 987532211 12234455556665432111 112688889888643 36778887 66 67899999
Q ss_pred CHHHHHHHHHHHHcC
Q 022768 204 NEQSRMEILKIHAAG 218 (292)
Q Consensus 204 ~~~~r~~i~~~~~~~ 218 (292)
+.+....|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999888888776653
No 238
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.99 E-value=9.9e-09 Score=88.00 Aligned_cols=194 Identities=20% Similarity=0.282 Sum_probs=122.3
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchh
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII 103 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~ 103 (292)
+...|+.+++.....+.+.+..... ..-...+||.|..||||-.+|++.-... ..||+.+||..+.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 5567888888888777776655442 1224469999999999999999877655 5689999999886
Q ss_pred ccccChHHHHHHHHHHHhh----------hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC---
Q 022768 104 DKYIGESARLIREMFGYAR----------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--- 170 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~----------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--- 170 (292)
..... .++|..+. ....+.+++||+..+ +...|..|+.+++.... +..+
T Consensus 268 e~~aE------sElFG~apg~~gk~GffE~AngGTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtF-RRVGee~ 329 (511)
T COG3283 268 EDAAE------SELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM-----------SPRLQAKLLRFLNDGTF-RRVGEDH 329 (511)
T ss_pred hhHhH------HHHhcCCCCCCCccchhhhccCCeEEeehhhhc-----------CHHHHHHHHHHhcCCce-eecCCcc
Confidence 54322 24454443 133479999999888 88899999999986432 1111
Q ss_pred ----CeEEEEEeCCC-------CCCChhhcCCCCcceEEEccCCCHHHHHH----HH----HHHHcCccCC-CCCCHHHH
Q 022768 171 ----KVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRME----IL----KIHAAGIAKH-GEIDYEAV 230 (292)
Q Consensus 171 ----~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~----i~----~~~~~~~~~~-~~~~~~~l 230 (292)
++.||++|+.+ .+.-.++.. |. -++++..|...+|.+ +. ..+..+.... ...+.+.+
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQKGKFREDLFY--RL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHHHHHhcCchHHHHHH--Hh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 58888888643 122333333 44 356666676666543 23 3333333333 44566666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMS 252 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~ 252 (292)
...+..-.++.++++-+.....
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA 428 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRA 428 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHH
Confidence 6666543444555554444333
No 239
>PRK06526 transposase; Provisional
Probab=98.99 E-value=1.6e-09 Score=91.52 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH-HHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
.+.+++|+||||+|||+++.+++.++ |..+.......+........ ...+...+.. ...+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCC-
Confidence 46789999999999999999998875 55555555544433221100 0011111111 23457999999987621
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+......+..+++.... +..+|+|+|.+
T Consensus 174 --------~~~~~~~L~~li~~r~~-----~~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYE-----RASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 35556677787765432 12378888865
No 240
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.98 E-value=3.5e-09 Score=92.55 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=75.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH---HHHHHHHHHHhhhCCCEEEEEcccccccC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES---ARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
..+++|+|++|+|||||+.++|+++ +..++++....+........ .......+..... ..+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCC-
Confidence 4789999999999999999999987 66788888777654331110 0011111333333 3699999996542
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC-CC----CChhhcCCCCcc---eEEEccCCCH
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DV----LDPALLRPGRLD---RKIEIPLPNE 205 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~-~~----l~~~l~~~~r~~---~~i~l~~p~~ 205 (292)
........+..+++.... .+..+|+|||.+ .. +++++.+ |+. ..+.|...|.
T Consensus 260 --------~t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDI 319 (329)
T ss_pred --------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcCh
Confidence 245666778888876432 123477788763 22 3455555 431 3455554443
No 241
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.97 E-value=1.2e-07 Score=78.13 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=116.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcE---EEEeccchhcc-----cc----C--------hHHHHHHHHHHHhhh-CCC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANF---LKVVSSAIIDK-----YI----G--------ESARLIREMFGYARD-HQP 126 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~---~~~~~~~~~~~-----~~----~--------~~~~~~~~~~~~~~~-~~~ 126 (292)
.+.++|+.|+|||+++|++...++..- +.++...+... .+ . .....-..+....+. ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 577899999999999997777664322 22222211110 00 0 011111222222222 446
Q ss_pred EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC-C---hhhcCCCCcceEEEccC
Q 022768 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL-D---PALLRPGRLDRKIEIPL 202 (292)
Q Consensus 127 ~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l-~---~~l~~~~r~~~~i~l~~ 202 (292)
.++++||++.+ .....+.+.-+.+.-......-++++++-......+ - ..+.. |+...+.+++
T Consensus 133 v~l~vdEah~L-----------~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDL-----------NDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhh-----------ChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCC
Confidence 89999999998 555666666666655544433344444432211111 0 12222 7777789999
Q ss_pred CCHHHHHHHHHHHHcCccCCC----CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 022768 203 PNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFM 267 (292)
Q Consensus 203 p~~~~r~~i~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~ 267 (292)
.+.++...++++++.+..... +-....+...+.| .|+-+.+++..|...|+..+...|+...+.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999999999999988654332 2345667778888 788999999999999999999988876654
No 242
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1e-07 Score=79.71 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCc-----EEEEecc------chhccc---c---ChHHHHHHHHHHHh---h-
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN-----FLKVVSS------AIIDKY---I---GESARLIREMFGYA---R- 122 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~-----~~~~~~~------~~~~~~---~---~~~~~~~~~~~~~~---~- 122 (292)
.+++.+||+|+.|+||..+|..+|+.+-+. +-.+..+ .+.+.. . .-..+.++.+.... .
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 457789999999999999999999877332 1110000 000000 0 01122233333322 1
Q ss_pred h-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEcc
Q 022768 123 D-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 123 ~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~ 201 (292)
. ....|++|+++|.+ .......|+.+++ .+++++.+|.+|+.++.+.+.++| |+ ..+.++
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE-----EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE-----EPPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc-----CCCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 1 23589999999999 6666666666665 466789999999999999999999 77 556676
Q ss_pred CC----------CHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 202 LP----------NEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 202 ~p----------~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
.+ +..+..+.+.... . ++. .++...+| +..++.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~i~~~L~~~~---~----~d~-~i~~~a~g-~~~~a~~l~~ 192 (261)
T PRK05818 146 SKEKKVPFKVESNDRYFQYILLSFY---S----VDE-QLQAYNNG-SFSKLKNIIE 192 (261)
T ss_pred ChhhhcccccccChHHHHHHHHHcc---C----ccH-HHHHHcCC-CHHHHHHHHH
Confidence 66 2222222222221 1 111 56666776 6667777766
No 243
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.93 E-value=2.6e-08 Score=82.76 Aligned_cols=127 Identities=18% Similarity=0.259 Sum_probs=80.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~ 145 (292)
..+-.+.||+|||||.++|.+|+.+|.+++.++|.+..+ ...+..++.-+... .+.+++||++++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 456778999999999999999999999999999988543 33444555444443 379999999999
Q ss_pred CcchHHHHHHHHHHHHHhh----C-----------CCCCCCeEEEEEeCC----CCCCChhhcCCCCcceEEEccCCCHH
Q 022768 146 TSADREIQRTLMELLNQLD----G-----------FDQLGKVKMIMATNR----PDVLDPALLRPGRLDRKIEIPLPNEQ 206 (292)
Q Consensus 146 ~~~~~~~~~~l~~~l~~~~----~-----------~~~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (292)
+.+....+.+.+..+. . +.-++.+.+.+|.|. ..++|+.++. -| +.+.+..||.+
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 6666666655554431 1 011124556777774 3578899987 56 77899999988
Q ss_pred HHHHHHH
Q 022768 207 SRMEILK 213 (292)
Q Consensus 207 ~r~~i~~ 213 (292)
...+++-
T Consensus 171 ~I~ei~L 177 (231)
T PF12774_consen 171 LIAEILL 177 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776644
No 244
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.2e-07 Score=81.20 Aligned_cols=170 Identities=12% Similarity=0.191 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------EEEEec------cchh
Q 022768 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FLKVVS------SAII 103 (292)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------~~~~~~------~~~~ 103 (292)
+..+++.+...+..- .-++.+||+|| .||+++|+.+|+.+-+. +-.+.. ..+.
T Consensus 7 q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455667777766542 45678999996 68999999999877332 111110 0111
Q ss_pred cc----ccC--hHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 104 DK----YIG--ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 104 ~~----~~~--~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
+- ..+ -..+.++.+..... .....|++||++|.+ .......|+..++ .+.++++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLE-----EPp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIE-----EPQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhc-----CCCCCeE
Confidence 10 001 12233444443332 234579999999999 6666666666665 3556788
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
+|.+|+.++.+.+.++| |+ ..+.|+. +.+...+++... ... .+...+.....| +++.+..+..
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~~~----g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLEQK----GLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHHHc----CCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 99999999999999999 77 7788866 555544554421 111 111233334445 6777776663
No 245
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.2e-09 Score=91.65 Aligned_cols=96 Identities=33% Similarity=0.575 Sum_probs=72.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccCh-HHHHHHHHHHHhh----hCCCEEEEEcccccccCC
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE-SARLIREMFGYAR----DHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~ 140 (292)
.+||+.||+|+|||.+++.+|+.++.|+.-++|..+.. .|+|+ .+..+..++..+. .+..+|+||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998864 35555 3445556655543 245589999999999744
Q ss_pred cCC-CCC--cchHHHHHHHHHHHHH
Q 022768 141 RFS-EGT--SADREIQRTLMELLNQ 162 (292)
Q Consensus 141 ~~~-~~~--~~~~~~~~~l~~~l~~ 162 (292)
..+ ++. -.....|..|+.+++-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 333 222 2456788888888864
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.91 E-value=9.1e-09 Score=89.25 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=63.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHH-HHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA-RLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
.+.+++|+|++|+|||+|+.++|+++ +..+..+....+......... ......+.... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35789999999999999999999988 677777777666543321111 11223333333 34699999996431
Q ss_pred cCCCCCcchHHHH-HHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 141 RFSEGTSADREIQ-RTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 141 ~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
.+.... ..+..+++.- ...+..+|+|+|.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R----~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYR----MQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHH----HHCCCeEEEECCCC
Confidence 133333 3344455432 11345688898864
No 247
>PRK06921 hypothetical protein; Provisional
Probab=98.91 E-value=9.6e-09 Score=87.47 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEccccc-ccC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDA-IGG 139 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~-l~~ 139 (292)
...+++|+|++|+|||+|+.++++++ +..++++...++........ ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35789999999999999999999976 45667776655443221111 1111222222 2347999999954 111
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
. ..........+..+++.... .+..+|+|+|.+
T Consensus 193 ~-----e~~t~~~~~~lf~iin~R~~----~~k~tIitsn~~ 225 (266)
T PRK06921 193 K-----PRATEWQIEQMYSVLNYRYL----NHKPILISSELT 225 (266)
T ss_pred C-----ccCCHHHHHHHHHHHHHHHH----CCCCEEEECCCC
Confidence 1 11134445667777776432 122367787753
No 248
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.90 E-value=3.3e-08 Score=90.77 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=115.7
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccCh
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~ 109 (292)
.++|.....+.+...+... ......++++|.+|+||+++++++.... +.+++.++|.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~--- 205 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL--- 205 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH---
Confidence 3555555555554444332 2346679999999999999999998655 4689999998753211
Q ss_pred HHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------C
Q 022768 110 SARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------Q 168 (292)
Q Consensus 110 ~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~ 168 (292)
.-..+|+. .....+++|||||++.| +...+..|..++....... .
T Consensus 206 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 206 ---LESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred ---HHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCcee
Confidence 11122221 12234689999999999 7788888888776532110 0
Q ss_pred CCCeEEEEEeCCCC-------CCChhhcCCCCcceEEEccCCCHHHHH----HHHHHHHcCc----cCC-CCCCHHHHHH
Q 022768 169 LGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGI----AKH-GEIDYEAVVK 232 (292)
Q Consensus 169 ~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~i~~~~~~~~----~~~-~~~~~~~l~~ 232 (292)
..++.+|++++..- .+.+.+.. ++ ..+.+..|+..+|. .++..++... ... ..++.+.+..
T Consensus 272 ~~~~rii~~t~~~~~~~~~~~~~~~~l~~--~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (441)
T PRK10365 272 SVDVRLIAATHRDLAAEVNAGRFRQDLYY--RL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 (441)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 11466787775531 12222222 22 23455556555554 3555555432 111 2355666665
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 233 LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 233 ~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+...-.|++++++.+.....+.......|+.+++...+
T Consensus 349 L~~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 349 LIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 55422244555444444333344444567777765443
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=86.88 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccCh-HHHHHHHHHHHhhhCCCEEEEEcccccccC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE-SARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
..+.+++|+||+|+||||++.+++... |..+.+++..++....... ....+...+... ...+.+++|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 457789999999999999999998764 6667777766554322111 011122333322 23557999999976521
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+......+..+++.... .+ .+|+|+|.+
T Consensus 179 ---------~~~~~~~lf~li~~r~~----~~-s~iiTsn~~ 206 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKRYE----KG-SMILTSNLP 206 (259)
T ss_pred ---------ChHHHHHHHHHHHHHHh----cC-cEEEecCCC
Confidence 34455667777766432 12 367788764
No 250
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.9e-09 Score=87.64 Aligned_cols=97 Identities=27% Similarity=0.514 Sum_probs=70.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccChHHHH-HHHHHHHhh----hCCCEEEEEcccccccC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGESARL-IREMFGYAR----DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~----~~~~~il~lDe~d~l~~ 139 (292)
..++|+.||.|+|||.||+.+|+.++.||--.++..+.. .|+|+...+ +..+++.+- ....+|++|||+|.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 346999999999999999999999999999988888763 356654333 334443332 23448999999999976
Q ss_pred CcCCC---CCcchHHHHHHHHHHHHH
Q 022768 140 RRFSE---GTSADREIQRTLMELLNQ 162 (292)
Q Consensus 140 ~~~~~---~~~~~~~~~~~l~~~l~~ 162 (292)
+.... .+-+....|.+|+.++.-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 55332 122456788888888864
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.88 E-value=3.6e-09 Score=84.71 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=62.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChH-HHHHHHHHHHhhhCCCEEEEEcccccccC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
..+.+++|+|++|+|||++|.++++++ +.++.+++..++........ .......+..... ..+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~-- 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE-- 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee--
Confidence 446789999999999999999999866 77888888887765432211 0111233333333 369999998543
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
..+......+.++++.-.. .+ ..|+|+|..
T Consensus 121 -------~~~~~~~~~l~~ii~~R~~----~~-~tIiTSN~~ 150 (178)
T PF01695_consen 121 -------PLSEWEAELLFEIIDERYE----RK-PTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH----T--EEEEEESS-
T ss_pred -------eecccccccchhhhhHhhc----cc-CeEeeCCCc
Confidence 1244556677777776542 12 467788864
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.2e-08 Score=86.24 Aligned_cols=101 Identities=21% Similarity=0.329 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHHH-H-HHHHHHHhhhCCCEEEEEcccccccC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESAR-L-IREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
.+.+++|+||||+|||+|+-++++++ |..++.+...++.......... . -..+.... ....+|+|||+-..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc-
Confidence 57789999999999999999999987 6788888888876654322221 1 11122212 234699999996641
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
.+......+.+++...-. .+-. ++|+|.+
T Consensus 181 --------~~~~~~~~~~q~I~~r~~----~~~~-~~tsN~~ 209 (254)
T COG1484 181 --------FSQEEADLLFQLISRRYE----SRSL-IITSNLS 209 (254)
T ss_pred --------CCHHHHHHHHHHHHHHHh----hccc-eeecCCC
Confidence 133344555555544321 1222 8888865
No 253
>PF14516 AAA_35: AAA-like domain
Probab=98.86 E-value=1.4e-06 Score=76.84 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=106.9
Q ss_pred cccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHH
Q 022768 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA 111 (292)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~ 111 (292)
+.+..+.+++.+.+.. ++..+.|.||..+|||+++..+.+.+ +..++.+++..+.........
T Consensus 14 i~R~~~e~~~~~~i~~--------------~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQ--------------PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred cCchHHHHHHHHHHhc--------------CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHH
Confidence 4555566777666643 47889999999999999998888766 566777776654332111111
Q ss_pred HHH-------------------------------HHHHHHh---hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHH
Q 022768 112 RLI-------------------------------REMFGYA---RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 157 (292)
Q Consensus 112 ~~~-------------------------------~~~~~~~---~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~ 157 (292)
..+ ...+... ....|-||+|||+|.++.. ......+.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~ 150 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFF 150 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHH
Confidence 100 1111111 1146789999999999632 12223334
Q ss_pred HHHHHhhCCCC----CCCeEEEEEeCCCCCCChhh-cCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHH
Q 022768 158 ELLNQLDGFDQ----LGKVKMIMATNRPDVLDPAL-LRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (292)
Q Consensus 158 ~~l~~~~~~~~----~~~~~vi~t~~~~~~l~~~l-~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~ 232 (292)
.+++.....+. ..++.+|++......+.... .++..++..+.++..+.++...+++.+-... .. ..++.+..
T Consensus 151 ~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~-~~~~~l~~ 227 (331)
T PF14516_consen 151 GLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQ-EQLEQLMD 227 (331)
T ss_pred HHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CH-HHHHHHHH
Confidence 44443322121 12344555443322222222 3433455688999999999999988775432 21 22788888
Q ss_pred HcCCCCHHHHHHHHH
Q 022768 233 LAEGFNGADLRNVCT 247 (292)
Q Consensus 233 ~~~g~~~~di~~l~~ 247 (292)
.+.|. |.=++.+|.
T Consensus 228 ~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 228 WTGGH-PYLVQKACY 241 (331)
T ss_pred HHCCC-HHHHHHHHH
Confidence 88884 334444443
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.85 E-value=2.8e-08 Score=75.32 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=46.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEeccchhcc--------------cc--ChHHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI--------DANFLKVVSSAIIDK--------------YI--GESARLIREMFGYA 121 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l--------~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~ 121 (292)
+..++|+|++|+|||++++.+++.+ ..+++.+++....+. .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5679999999999999999999987 667777776544310 00 11233334444444
Q ss_pred hhCCCEEEEEcccccc
Q 022768 122 RDHQPCIIFMDEIDAI 137 (292)
Q Consensus 122 ~~~~~~il~lDe~d~l 137 (292)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 4455469999999997
No 255
>PF05729 NACHT: NACHT domain
Probab=98.84 E-value=4.2e-08 Score=77.33 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=77.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--------cE-EEEeccchhcccc-ChHHHHH-----------HH-HHHHhhhCC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDA--------NF-LKVVSSAIIDKYI-GESARLI-----------RE-MFGYARDHQ 125 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~--------~~-~~~~~~~~~~~~~-~~~~~~~-----------~~-~~~~~~~~~ 125 (292)
.++|+|++|+|||++++.++..+.. ++ +............ ......+ .. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5889999999999999999987611 12 2222222221110 0111111 11 111223345
Q ss_pred CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC--CChhhcCCCCcceEEEccCC
Q 022768 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV--LDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~--l~~~l~~~~r~~~~i~l~~p 203 (292)
..+++||.+|.+...... .........+..++.. ...+++.++.|++.... +...+.. ...+.+.+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 679999999998432100 0011222333344433 22346677777764332 2222222 156899999
Q ss_pred CHHHHHHHHHHHHcC
Q 022768 204 NEQSRMEILKIHAAG 218 (292)
Q Consensus 204 ~~~~r~~i~~~~~~~ 218 (292)
+.++..++++.++++
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988763
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=4.8e-07 Score=78.11 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=86.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCc-------------EEEEeccchhccccChHHHHHHHHHHHhhh-----CCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN-------------FLKVVSSAIIDKYIGESARLIREMFGYARD-----HQP 126 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 126 (292)
-++.+||+|+.|.||+++++.+++.+-|. +..++. .+.. ...+.++.+...... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~--i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKD--LSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCc--CCHHHHHHHHHHhccCCcccCCc
Confidence 35678899999999999999999987331 111210 0111 112334444433321 256
Q ss_pred EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHH
Q 022768 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206 (292)
Q Consensus 127 ~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (292)
.|++||++|.+ .......|+..++. +++.+.+|.+++.++.+-+.+++ |+ ..+.|.+++.+
T Consensus 92 KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 92 KILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred eEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 89999999988 66566666666653 45678888888888889999998 77 77999999988
Q ss_pred HHHHHHHH
Q 022768 207 SRMEILKI 214 (292)
Q Consensus 207 ~r~~i~~~ 214 (292)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 88766654
No 257
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.80 E-value=2.2e-08 Score=88.66 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=64.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-cEEEEeccchhccccChH------HHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA-NFLKVVSSAIIDKYIGES------ARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
..++++++|+|+.|+|||+|+..+...+.. .-.+++..++....-... ...+..+.+... ....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 456899999999999999999999998865 333344333332110010 111222222222 222599999998
Q ss_pred cccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 136 AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
.- +......|..++..+-. .++++|+|+|.+
T Consensus 138 V~-----------DiaDAmil~rLf~~l~~----~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALFK----RGVVLVATSNRP 168 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHHH----CCCEEEecCCCC
Confidence 75 44444555566665532 488999999974
No 258
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.79 E-value=3.6e-08 Score=89.90 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=123.3
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHH
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARL 113 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (292)
++|.+++|..+--.+-.-... .....-.++---++||+|.||||||.++|++++.....++....+.-. +|-+...
T Consensus 451 IyGh~~VK~AvAlaLfGGv~k-n~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa---vGLTa~v 526 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPK-NPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA---VGLTAYV 526 (854)
T ss_pred hhchHHHHHHHHHHHhcCCcc-CCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc---cceeEEE
Confidence 689999988887766432111 000000122244699999999999999999999887666553322111 1111000
Q ss_pred -----HHHHHHHhh---hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-CC-------CCCCCeEEEEE
Q 022768 114 -----IREMFGYAR---DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-------DQLGKVKMIMA 177 (292)
Q Consensus 114 -----~~~~~~~~~---~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-------~~~~~~~vi~t 177 (292)
.++|.-.+- ....+|-+|||||.+-.. ....+.+.+.+-. ++ .-+.++.+|++
T Consensus 527 ~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq-----------DRtSIHEAMEQQSISISKAGIVtsLqArctvIAA 595 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ-----------DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAA 595 (854)
T ss_pred eeCCccceeeeccCeEEEccCceEEeehhhhhccc-----------ccchHHHHHHhcchhhhhhhHHHHHHhhhhhhee
Confidence 011111111 133479999999998311 1111112221100 00 11147889999
Q ss_pred eCCC---C----------CCChhhcCCCCcceEEEc---cCCCHHHHHH--HHHHHHcC---------------------
Q 022768 178 TNRP---D----------VLDPALLRPGRLDRKIEI---PLPNEQSRME--ILKIHAAG--------------------- 218 (292)
Q Consensus 178 ~~~~---~----------~l~~~l~~~~r~~~~i~l---~~p~~~~r~~--i~~~~~~~--------------------- 218 (292)
+|+. . ++...+++ ||+..--+ -.|-.+++.. ++..+...
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ 673 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEP 673 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccccc
Confidence 9872 1 35567777 77542111 1122222221 12222210
Q ss_pred -----------------ccCCCCCCHHHHHHHcC---------C---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 219 -----------------IAKHGEIDYEAVVKLAE---------G---FNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 219 -----------------~~~~~~~~~~~l~~~~~---------g---~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
.+.....|.+.++.... | .+.+.|..+++.+.+.|..+.+..|+.+|+..|
T Consensus 674 ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A 753 (854)
T KOG0477|consen 674 IPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA 753 (854)
T ss_pred ChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence 01112233333333221 2 156889999999999999999999999999999
Q ss_pred HHHHhhhh
Q 022768 270 VRKLNEAK 277 (292)
Q Consensus 270 ~~~~~~~~ 277 (292)
++.+....
T Consensus 754 I~v~ldSf 761 (854)
T KOG0477|consen 754 IRVMLDSF 761 (854)
T ss_pred HHHHHHHH
Confidence 99887653
No 259
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.75 E-value=3.7e-07 Score=77.93 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=102.7
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCcEEEEeccchhcc--
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS---NIDANFLKVVSSAIIDK-- 105 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~---~l~~~~~~~~~~~~~~~-- 105 (292)
...+.|..+..+.+-+.+.+-.. ...+..+++.||.|+|||++...... +.+..++.+........
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~---------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL---------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDK 93 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH---------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhH
Confidence 35678888888888777765321 25577899999999999998766554 45777777766554432
Q ss_pred -------------------ccChHHHHHHHHHHHhhh-----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHH
Q 022768 106 -------------------YIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (292)
Q Consensus 106 -------------------~~~~~~~~~~~~~~~~~~-----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~ 161 (292)
..|.....+..+....+. ..+.|.++||+|.+++ ..-|..+.++++
T Consensus 94 ~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfD 163 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHH
Confidence 001111111111111111 2235667889998863 345566677777
Q ss_pred HhhCCCCCCCeEEEEEeCCC---CCCChhhcCCCCcceE-EEc-cCCCHHHHHHHHHHHHc
Q 022768 162 QLDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLDRK-IEI-PLPNEQSRMEILKIHAA 217 (292)
Q Consensus 162 ~~~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~~-i~l-~~p~~~~r~~i~~~~~~ 217 (292)
.... ..-.+.+|+.|... +.+.+++++ ||... |.+ +.....+..++++..+.
T Consensus 164 isqs--~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 164 ISQS--ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHhh--cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 6552 23466777766543 456788888 99775 555 44567888899888774
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-07 Score=91.46 Aligned_cols=130 Identities=23% Similarity=0.397 Sum_probs=93.2
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchh------
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII------ 103 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~------ 103 (292)
.++|+++++..+-+.+...-.+ ..+. .+...++|.||.|+|||-+|+++|..+ ...++.+++.++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g---l~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG---LKDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc---cCCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4889999999998888654211 1111 356679999999999999999999988 4467888888532
Q ss_pred cc---ccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC------CeEE
Q 022768 104 DK---YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG------KVKM 174 (292)
Q Consensus 104 ~~---~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~v 174 (292)
+. |.|..+ ...+....+....+||+|||+|.- +...+..|.++++...-....+ +++|
T Consensus 638 gsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 638 GSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 21 333322 235666667777899999999987 7888888888888654333223 6889
Q ss_pred EEEeCC
Q 022768 175 IMATNR 180 (292)
Q Consensus 175 i~t~~~ 180 (292)
|+|+|.
T Consensus 705 IMTsn~ 710 (898)
T KOG1051|consen 705 IMTSNV 710 (898)
T ss_pred EEeccc
Confidence 999875
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.74 E-value=1.3e-06 Score=75.42 Aligned_cols=174 Identities=21% Similarity=0.245 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh--cCCcE---EEEeccchhcc-------
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN--IDANF---LKVVSSAIIDK------- 105 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~--l~~~~---~~~~~~~~~~~------- 105 (292)
+..+++|.+.+... -.....+.|+|++|+|||++|..+++. ....+ +.++.......
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 55677777776552 134667889999999999999999987 43322 22332221110
Q ss_pred ------c------cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 106 ------Y------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 106 ------~------~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
. ...... ....+.......+.+|+||+++.. . .+..+...+. ....+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~LlVlDdv~~~-----------~-----~~~~l~~~~~--~~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEE-LQDQLRELLKDKRCLLVLDDVWDE-----------E-----DLEELREPLP--SFSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHH-HHHHHHHHHCCTSEEEEEEEE-SH-----------H-----HH-------H--CHHSS-E
T ss_pred ccccccccccccccccccc-ccccchhhhccccceeeeeeeccc-----------c-----cccccccccc--ccccccc
Confidence 0 011222 223333333455899999998754 1 2212221111 1113567
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc---CC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA---KH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~---~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
+|+||+.... ...... . ...+.++..+.++-.++++....... .. .......+...+.| .|--|..+.
T Consensus 132 ilvTTR~~~v-~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 132 ILVTTRDRSV-AGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp EEEEESCGGG-GTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccc-cccccc--c-cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 8888875432 111111 1 36789999999999999998876443 11 12224678888887 554555443
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.73 E-value=1.4e-06 Score=88.98 Aligned_cols=178 Identities=21% Similarity=0.306 Sum_probs=101.3
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE---EEEeccch
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---LKVVSSAI 102 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---~~~~~~~~ 102 (292)
.++..+++++|.++..++|...+... ....+.+.|+|++|+||||+|+++++.+...+ +.++...+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 35567899999999999998887532 34467789999999999999999998774432 11211000
Q ss_pred hc---ccc-------C----hHHHHHHH-------------HHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHH
Q 022768 103 ID---KYI-------G----ESARLIRE-------------MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 155 (292)
Q Consensus 103 ~~---~~~-------~----~~~~~~~~-------------~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~ 155 (292)
.. .+. . .....+.. ........++.+|+|||++.. .....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~ 313 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDA 313 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHH
Confidence 00 000 0 00001111 111122345678999998643 12222
Q ss_pred HHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCH----HHHH
Q 022768 156 LMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY----EAVV 231 (292)
Q Consensus 156 l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~----~~l~ 231 (292)
+. .... ....+..||+||++.+ +.........+.++.|+.++-.++++.++...... ..++ ..++
T Consensus 314 L~---~~~~--~~~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv 382 (1153)
T PLN03210 314 LA---GQTQ--WFGSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVA 382 (1153)
T ss_pred HH---hhCc--cCCCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 22 1111 1123556788888543 22212345678899999999999999887643221 1222 2345
Q ss_pred HHcCCCC
Q 022768 232 KLAEGFN 238 (292)
Q Consensus 232 ~~~~g~~ 238 (292)
....|.+
T Consensus 383 ~~c~GLP 389 (1153)
T PLN03210 383 LRAGNLP 389 (1153)
T ss_pred HHhCCCc
Confidence 5666644
No 263
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.69 E-value=1.5e-07 Score=84.24 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=137.1
Q ss_pred ChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE
Q 022768 15 DPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (292)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~ 94 (292)
.|.+|..++.+..|. +.|.++.++.+--.+-.- ..+.+-..+-..-.-+||+-|.||+.||.++|.+-+-....+
T Consensus 318 ~~d~Ye~is~sIAPS----IfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaV 392 (729)
T KOG0481|consen 318 SPDVYERISKSIAPS----IFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV 392 (729)
T ss_pred CccHHHHHhhccCch----hcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEE
Confidence 344455555554443 789999999887765321 111111111123345699999999999999999888766555
Q ss_pred EEEeccchhccccChHHHHHHHHHHH--------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh-C
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGY--------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-G 165 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 165 (292)
+...-+.- ..|-+...++.-..+ .-....+|++|||||.+ ..+...++.+.+++-. +
T Consensus 393 YTSGKGSS---AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM-----------re~DRVAIHEAMEQQTIS 458 (729)
T KOG0481|consen 393 YTSGKGSS---AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM-----------REDDRVAIHEAMEQQTIS 458 (729)
T ss_pred EecCCCcc---cccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc-----------CchhhhHHHHHHHhhhHH
Confidence 54332111 111111111110000 01134589999999999 3333444444444321 1
Q ss_pred C-------CCCCCeEEEEEeCCCC-----------C--CChhhcCCCCcceEEEccCCCHHHH-HHHHHHHHc----Cc-
Q 022768 166 F-------DQLGKVKMIMATNRPD-----------V--LDPALLRPGRLDRKIEIPLPNEQSR-MEILKIHAA----GI- 219 (292)
Q Consensus 166 ~-------~~~~~~~vi~t~~~~~-----------~--l~~~l~~~~r~~~~i~l~~p~~~~r-~~i~~~~~~----~~- 219 (292)
+ .-+.++.|++++|... . .-+.+++ ||+..+-++.-..+++ ..|.++... ..
T Consensus 459 IAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n 536 (729)
T KOG0481|consen 459 IAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKAN 536 (729)
T ss_pred HhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccc
Confidence 1 2234778899998642 1 3367788 9988877765443333 333333322 00
Q ss_pred -c------CCCCCCHHHHHHHc--------------------C----------------------CCCHHHHHHHHHHHH
Q 022768 220 -A------KHGEIDYEAVVKLA--------------------E----------------------GFNGADLRNVCTEAG 250 (292)
Q Consensus 220 -~------~~~~~~~~~l~~~~--------------------~----------------------g~~~~di~~l~~~a~ 250 (292)
. ....+.++.+.+.. . -.+.+++..+++-+.
T Consensus 537 ~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~E 616 (729)
T KOG0481|consen 537 AQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAE 616 (729)
T ss_pred cccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHH
Confidence 0 01112222222111 0 126789999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 251 MSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 251 ~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
.+|..+..+..|.+++.+|++-++..
T Consensus 617 SLAKm~Ls~~ate~hV~EA~RLF~vS 642 (729)
T KOG0481|consen 617 SLAKMELSPFATEAHVEEALRLFQVS 642 (729)
T ss_pred HHHhhcCCccccHHHHHHHHHHHhHh
Confidence 99999999999999999999988864
No 264
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.66 E-value=1.1e-06 Score=73.99 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=118.6
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE-------eccchhcc
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV-------VSSAIIDK 105 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~-------~~~~~~~~ 105 (292)
.|.|+.-+++.+...+...+.+.. -..+-.+=++|++||||+++++.+|+.+...-... ...++...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478998888888888877654411 12233455889999999999999998773221111 11111111
Q ss_pred -ccCh-HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC--CCCCCeEEEEEeCCC
Q 022768 106 -YIGE-SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRP 181 (292)
Q Consensus 106 -~~~~-~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~t~~~~ 181 (292)
.+.. ..+....+.+.+..|..++.++||+|.| .+...+.+.-+++..... ....+.++|+-+|..
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 1111 1223344555566788899999999999 788888888888753222 223356677777664
Q ss_pred C-CCCh---hhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCC---HHHHHHHHHHHHHHHH
Q 022768 182 D-VLDP---ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFN---GADLRNVCTEAGMSAI 254 (292)
Q Consensus 182 ~-~l~~---~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~---~~di~~l~~~a~~~a~ 254 (292)
. .+.. ...++++-...+.+....+.-..........+...+..++-..+..... |- .+++++.++... .
T Consensus 226 g~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIP-FLPLek~hV~~C~r~el---~ 301 (344)
T KOG2170|consen 226 GSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIP-FLPLEKRHVRSCIRAEL---R 301 (344)
T ss_pred chHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccC-cCcccHHHHHHHHHHHH---H
Confidence 4 3332 1222233334445554444433333333333334444343333333222 33 355555555332 2
Q ss_pred HhcCCcccHHHHHHHHHHHh
Q 022768 255 RAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 255 ~~~~~~i~~~~~~~a~~~~~ 274 (292)
+++ .....+-+.+.+..+.
T Consensus 302 ~rg-~~~d~~~~erva~~l~ 320 (344)
T KOG2170|consen 302 KRG-LAPDQDFVERVANSLS 320 (344)
T ss_pred hcc-cccchHHHHHHHHhhc
Confidence 333 3344555555555544
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.65 E-value=2.7e-07 Score=72.37 Aligned_cols=110 Identities=26% Similarity=0.353 Sum_probs=62.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc------------------------cChHHHHHHHHHHHh
Q 022768 69 VLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY------------------------IGESARLIREMFGYA 121 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 121 (292)
++|+|+||+|||+++..++... +.+++.++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999877 4556665544322100 001111122334445
Q ss_pred hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 122 ~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
....+.+++|||+..+..................+..++..... .++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCC
Confidence 55778999999999875322100001122334455555544432 3666777776553
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.63 E-value=1.3e-07 Score=75.99 Aligned_cols=59 Identities=25% Similarity=0.455 Sum_probs=38.1
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---EEEEeccch
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAI 102 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~~~~~~~~~ 102 (292)
++|++++.++|..++.. .. -..++.++|+|++|+|||++++.+...+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 68999999999999852 11 1446789999999999999999988777433 555554444
No 267
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.62 E-value=1.9e-07 Score=80.36 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcE-EEEeccchhcc-------ccChHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF-LKVVSSAIIDK-------YIGESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
.++++++++|+-|.|||+|+..+...+..+- .++....+... ..|+..-.-....+.+... .+|+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~--~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAET--RVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcC--CEEEeeeee
Confidence 4678999999999999999999999886543 33333332211 1122211111111222223 599999997
Q ss_pred cccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 136 AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
.- +-...-.|..+++.+-. .+|++++|+|.+
T Consensus 141 Vt-----------DI~DAMiL~rL~~~Lf~----~GV~lvaTSN~~ 171 (367)
T COG1485 141 VT-----------DIADAMILGRLLEALFA----RGVVLVATSNTA 171 (367)
T ss_pred ec-----------ChHHHHHHHHHHHHHHH----CCcEEEEeCCCC
Confidence 65 44444555566666543 489999999974
No 268
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.60 E-value=2.3e-07 Score=89.92 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=131.1
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCC-hHHHHhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMN-PELFLRVGIKPPK--GVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~--~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
...+.+.+..++.|.......+.+.+...... +..|...+..... .++++||||+|||+.+..+|..++..+++.|.
T Consensus 311 ~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na 390 (871)
T KOG1968|consen 311 TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA 390 (871)
T ss_pred ccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCc
Confidence 35667777788888888888888877653111 1112221111111 36899999999999999999999999999998
Q ss_pred cchhccccCh-------HHHHHHHHH-----HHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC
Q 022768 100 SAIIDKYIGE-------SARLIREMF-----GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (292)
Q Consensus 100 ~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 167 (292)
....+..... ....+...+ .........+|++||+|.++. .++.....+..+...
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k----- 457 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK----- 457 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh-----
Confidence 8776543211 001111111 000112234999999999853 245555555555552
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
...-+|.+||+.......-.. +.+..++|+.|+...+..-+..++...... ++-..+..++.. +++||++.+.
T Consensus 458 --s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~k--i~~~~l~~~s~~-~~~DiR~~i~ 530 (871)
T KOG1968|consen 458 --SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIK--ISDDVLEEISKL-SGGDIRQIIM 530 (871)
T ss_pred --ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccccee--cCcHHHHHHHHh-cccCHHHHHH
Confidence 234588899887665543333 445778999999988877666555432222 333444444442 4559999888
Q ss_pred HHHHHH
Q 022768 248 EAGMSA 253 (292)
Q Consensus 248 ~a~~~a 253 (292)
....+.
T Consensus 531 ~lq~~~ 536 (871)
T KOG1968|consen 531 QLQFWS 536 (871)
T ss_pred HHhhhh
Confidence 887774
No 269
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.59 E-value=3e-07 Score=84.57 Aligned_cols=187 Identities=28% Similarity=0.319 Sum_probs=109.8
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--CCcEEEEeccchhccccChHHHH
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKYIGESARL 113 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~ 113 (292)
+.....+.+.+.+... ....-++++.|.+|+||-.+++++-... ..|++.+||..+.....++
T Consensus 317 ~~d~s~a~l~rk~~rv-----------~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~lies---- 381 (606)
T COG3284 317 LLDPSRATLLRKAERV-----------AATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIES---- 381 (606)
T ss_pred ccCHHHHHHHHHHHHH-----------hhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhH----
Confidence 4555555555544432 2335679999999999999999999766 4589999998876543332
Q ss_pred HHHHHHHhh----------------hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-----CCCCCe
Q 022768 114 IREMFGYAR----------------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-----DQLGKV 172 (292)
Q Consensus 114 ~~~~~~~~~----------------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~ 172 (292)
++|.+.. ....+.||+||+..| .-..|..|+..+.+.... ...=.+
T Consensus 382 --ELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdi 448 (606)
T COG3284 382 --ELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDI 448 (606)
T ss_pred --HHhccCccccccchhccccccceecCCCccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEE
Confidence 3443321 234479999999988 888999999999875321 111157
Q ss_pred EEEEEeCCCCCCChhhcCCCCcce-------EEEccCCCHHHHH---HHHHHHHcCc-cCCCCCCHHHHHHHcCCC---C
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDR-------KIEIPLPNEQSRM---EILKIHAAGI-AKHGEIDYEAVVKLAEGF---N 238 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~-------~i~l~~p~~~~r~---~i~~~~~~~~-~~~~~~~~~~l~~~~~g~---~ 238 (292)
.||++|+..- ..+...++|.. ...+..|...+|. .++.+++... ...-.++-+.+..+..-- |
T Consensus 449 rvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGN 525 (606)
T COG3284 449 RVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGN 525 (606)
T ss_pred EEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCc
Confidence 7888887531 11222223321 2334445555554 3444444322 222345555555554433 4
Q ss_pred HHHHHHHHHHHHHHH
Q 022768 239 GADLRNVCTEAGMSA 253 (292)
Q Consensus 239 ~~di~~l~~~a~~~a 253 (292)
.++++++++.+...+
T Consensus 526 irel~~v~~~~~~l~ 540 (606)
T COG3284 526 IRELDNVIERLAALS 540 (606)
T ss_pred HHHHHHHHHHHHHcC
Confidence 555555555555433
No 270
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.9e-07 Score=77.82 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=43.4
Q ss_pred HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCCh
Q 022768 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (292)
Q Consensus 115 ~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~ 186 (292)
+.+++++....|.+++|||- ..+.+...+..+.+++..+.. .++.|+..+++...+..
T Consensus 147 RV~lARAL~~~p~lllLDEP----------~~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEP----------FTGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCC----------cccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcHHhHh
Confidence 44556666788999999994 345588889999999988753 26778888888765544
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.50 E-value=5.3e-07 Score=74.25 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=51.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchh-ccccC----------------------hHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII-DKYIG----------------------ESARLIR 115 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~-~~~~~----------------------~~~~~~~ 115 (292)
|++.+..++|+||||+|||+++..++... +..+++++...+. ..... +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67888899999999999999999988644 5677888776411 10000 0111133
Q ss_pred HHHHHhhhCCCEEEEEcccccccC
Q 022768 116 EMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 116 ~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
.+...+....+++|+||-+..++.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333334444688999999998753
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.43 E-value=2.7e-06 Score=75.85 Aligned_cols=78 Identities=21% Similarity=0.411 Sum_probs=52.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc------Ch--------HHHHHHHHHHHhhhC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI------GE--------SARLIREMFGYARDH 124 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~ 124 (292)
|+.++..++|.|+||+|||+++..++..+ +.++++++..+...... +. ....+..+...+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57888889999999999999999998765 34677776543221100 00 011234455555566
Q ss_pred CCEEEEEcccccccC
Q 022768 125 QPCIIFMDEIDAIGG 139 (292)
Q Consensus 125 ~~~il~lDe~d~l~~ 139 (292)
.|.+|+||+++.+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 889999999998854
No 273
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.42 E-value=4.6e-07 Score=66.30 Aligned_cols=23 Identities=43% Similarity=0.959 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 022768 69 VLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~ 91 (292)
|+|+|+||+|||++++.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 274
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1e-05 Score=66.70 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=95.0
Q ss_pred CCceEEEEcCCC-ChHHHHHHHHHHhcCC---------cEEEEeccchhcc-ccChHHHHHHHHHHHhh----hCCCEEE
Q 022768 65 PPKGVLLYGPPG-TGKTLLARAIASNIDA---------NFLKVVSSAIIDK-YIGESARLIREMFGYAR----DHQPCII 129 (292)
Q Consensus 65 ~~~~vll~G~~G-~GKT~l~~~la~~l~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~il 129 (292)
-.+.+||.|..+ +||..++..++..+-+ .+..+........ ...-..+.++++..... .....|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 356799999998 9999998888877633 2333322110000 00012333444444332 3456899
Q ss_pred EEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHH
Q 022768 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM 209 (292)
Q Consensus 130 ~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~ 209 (292)
+|+++|.+ ......+|+..++ .+++++.+|.+|+.++.+.+.++| || ..+.++.|+.....
T Consensus 94 II~~ae~m-----------t~~AANALLKtLE-----EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELM-----------NLNAANSCLKILE-----DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYN 154 (263)
T ss_pred EEechHHh-----------CHHHHHHHHHhhc-----CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHH
Confidence 99999999 6666677766665 355678888888889999999999 87 78899999998888
Q ss_pred HHHHHHHcCccCC
Q 022768 210 EILKIHAAGIAKH 222 (292)
Q Consensus 210 ~i~~~~~~~~~~~ 222 (292)
+.+...+......
T Consensus 155 e~~~~~~~p~~~~ 167 (263)
T PRK06581 155 ELYSQFIQPIADN 167 (263)
T ss_pred HHHHHhccccccc
Confidence 8888777654433
No 275
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.41 E-value=3.7e-06 Score=66.42 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchhc--------ccc-----ChHHHHHHHHHHHhhhCCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIID--------KYI-----GESARLIREMFGYARDHQP 126 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~ 126 (292)
.+.++..+.|.||+|+||||+++.++...... -+.++...+.. ... =......+..+..+....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 36778899999999999999999999876321 12222211110 000 0112233455666677889
Q ss_pred EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 127 ~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.++++||... ..+......+.+++..+.. .+..+|.++++.+
T Consensus 102 ~illlDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 143 (163)
T cd03216 102 RLLILDEPTA----------ALTPAEVERLFKVIRRLRA----QGVAVIFISHRLD 143 (163)
T ss_pred CEEEEECCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 9999999643 3377777788888876531 2456777777654
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.41 E-value=3.2e-06 Score=77.37 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=54.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccCh--------------HHHHHHHHHHHhhhC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE--------------SARLIREMFGYARDH 124 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 124 (292)
|+.++..++|+|+||+|||+++..++... +.++++++..+........ ....+..++..+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 57888889999999999999999998765 5677777755432211000 001133444555556
Q ss_pred CCEEEEEcccccccCC
Q 022768 125 QPCIIFMDEIDAIGGR 140 (292)
Q Consensus 125 ~~~il~lDe~d~l~~~ 140 (292)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 7899999999988643
No 277
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.40 E-value=6.4e-07 Score=83.10 Aligned_cols=107 Identities=27% Similarity=0.423 Sum_probs=68.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------c----EEEEe------ccchhc--cc------cCh------
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------N----FLKVV------SSAIID--KY------IGE------ 109 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-------~----~~~~~------~~~~~~--~~------~~~------ 109 (292)
+.++++..++|.|++|+|||++.|++|..-.. | .+.+. ...+.. .+ .++
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 34788999999999999999999999965411 1 11111 000000 00 000
Q ss_pred ------------------------HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 110 ------------------------SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 110 ------------------------~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
....-+..|.++...+|.++||||+- +.-+.+.+..++++++.-
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT----------sALDe~~e~~l~q~l~~~-- 561 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT----------SALDEETEDRLYQLLKEE-- 561 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch----------hccChHHHHHHHHHHHhh--
Confidence 01112445666677899999999973 334777888888888752
Q ss_pred CCCCCCeEEEEEeCCCC
Q 022768 166 FDQLGKVKMIMATNRPD 182 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~ 182 (292)
-+++.+|..++.+.
T Consensus 562 ---lp~~tvISV~Hr~t 575 (604)
T COG4178 562 ---LPDATVISVGHRPT 575 (604)
T ss_pred ---CCCCEEEEeccchh
Confidence 25778888888654
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.40 E-value=3.4e-06 Score=68.05 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=35.3
Q ss_pred HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 115 ~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
+-.+.++....|.++++||.- +.-+++.....+..+..+.. .+..+|+.|+.
T Consensus 144 RVAIARALaM~P~vmLFDEPT----------SALDPElv~EVL~vm~~LA~----eGmTMivVTHE 195 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPT----------SALDPELVGEVLDVMKDLAE----EGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCc----------ccCCHHHHHHHHHHHHHHHH----cCCeEEEEech
Confidence 344555666889999999963 44477777777777766542 35667777764
No 279
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.39 E-value=4.8e-06 Score=72.82 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=88.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcE--EEEeccchhccc---------------cC----hHHHHHHHHHHHhh
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIIDKY---------------IG----ESARLIREMFGYAR 122 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--~~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~ 122 (292)
.++++++|||.-|+|||+|+..+...+.... -+++...+.... .+ ..-+-+.-+.+.+.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 3478999999999999999999997664311 111111111100 00 00011111111111
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC-CCCCChhhcCCCCcceEEEcc
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-PDVLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~-~~~l~~~l~~~~r~~~~i~l~ 201 (292)
..-.+|++||+..- +-...-+|..++..+-. .++++++|+|+ |+++...-..+.-|
T Consensus 192 -~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf~----~GvVlvATSNR~P~dLYknGlQR~~F------- 248 (467)
T KOG2383|consen 192 -EEAILLCFDEFQVT-----------DVADAMILKRLFEHLFK----NGVVLVATSNRAPEDLYKNGLQRENF------- 248 (467)
T ss_pred -hhceeeeechhhhh-----------hHHHHHHHHHHHHHHHh----CCeEEEEeCCCChHHHhhcchhhhhh-------
Confidence 22369999999765 44444455566655432 48999999987 45555433331123
Q ss_pred CCCHHHHHHHHHHHHcCccCCCCCCHHHHHH-HcCCC---CHHHHHHHHHHHHH
Q 022768 202 LPNEQSRMEILKIHAAGIAKHGEIDYEAVVK-LAEGF---NGADLRNVCTEAGM 251 (292)
Q Consensus 202 ~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~-~~~g~---~~~di~~l~~~a~~ 251 (292)
---..+++.++.-..+...+|+...+. ...+| +..|...++++-..
T Consensus 249 ----~PfI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 249 ----IPFIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ----hhHHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 123467777787777777777762221 11222 23367777766654
No 280
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=7.7e-07 Score=73.38 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+||||||+++.+|.-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778889999999999999999999655
No 281
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.38 E-value=3.4e-06 Score=69.28 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=41.6
Q ss_pred HHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhc
Q 022768 116 EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189 (292)
Q Consensus 116 ~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~ 189 (292)
.++.++.-..|.+|+|||-- .+.+....+.+.+.+..+-. ..+...+|..|+..+++++.+-
T Consensus 180 vLiaRALv~~P~LLiLDEP~----------~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 180 VLIARALVKDPELLILDEPA----------QGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccc
Confidence 34555556789999999952 22355555667777766652 3345668888999988888554
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.37 E-value=4.4e-06 Score=66.71 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=65.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccch---hccccChHHHHHHHHHHHhhhCCCEEEEEcccccc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI---IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI 137 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l 137 (292)
+.++..+.|.||+|+|||||++.++...... -+.++...+ .....=......+..+..+....|.++++||--.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts- 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA- 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc-
Confidence 5678889999999999999999999876322 122221111 0100001222334455566667889999999643
Q ss_pred cCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
..+......+.+++..... ..+..+|.++++.+
T Consensus 101 ---------~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~ 133 (177)
T cd03222 101 ---------YLDIEQRLNAARAIRRLSE---EGKKTALVVEHDLA 133 (177)
T ss_pred ---------cCCHHHHHHHHHHHHHHHH---cCCCEEEEEECCHH
Confidence 3366777777777766531 12245777777654
No 283
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.37 E-value=2.8e-05 Score=70.19 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=74.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~ 147 (292)
.++|.||.++||||+++.+.+......++++..+....... ..+.+ ..+..........++|||++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-l~d~~-~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-LLDLL-RAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-HHHHH-HHHHHhhccCCceEEEecccCc----------
Confidence 78999999999999999999888666777776665443211 11112 2222222224479999999986
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC--CCCCChhhcCCCCcceEEEccCCCHHHHHH
Q 022768 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNR--PDVLDPALLRPGRLDRKIEIPLPNEQSRME 210 (292)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~--~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~ 210 (292)
..+...+..+.+... .++++.+++.. ...+...+.. |. ..+.+.|.+..+...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~G--R~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAG--RG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCC--Cc-eeEEECCCCHHHHHh
Confidence 445566666655421 13333332221 1234445544 63 778899999999865
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.35 E-value=5.7e-06 Score=66.66 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=58.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc-------------------------------cChHH---
Q 022768 69 VLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY-------------------------------IGESA--- 111 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~-------------------------------~~~~~--- 111 (292)
++|.||||+|||+++..++... +.+++++...+..... .+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999998887644 5666666543221100 00000
Q ss_pred HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 112 ~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
..+..+...+....|.+++||++..+... ........+..++..+.. .++.+|++++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 11233444445567899999999876421 113333444555555432 245566666544
No 285
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=61.84 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...++++|+||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4569999999999999999999877
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.34 E-value=6.3e-06 Score=71.68 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=51.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|++++..++|+||||+|||+|+-.++... +.++++++..+.... .....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 47888899999999999999988877654 566777665432210 11112233333333344
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+.+|+||-+..+.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 45678999999998864
No 287
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.33 E-value=7e-06 Score=71.42 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|++.++.+.|+||||+|||++|-.++... +..+++++..+.... .+...+..+..+-..+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 47788889999999999999999888544 667777765432110 11112223333333334
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+++|+||-+..+.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 45678999999998875
No 288
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.32 E-value=1e-05 Score=81.66 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=97.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc--ccCh----HHH---HHHHHHHHhhhCCCEEEEEccc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--YIGE----SAR---LIREMFGYARDHQPCIIFMDEI 134 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~--~~~~----~~~---~~~~~~~~~~~~~~~il~lDe~ 134 (292)
.....+||.||.-+|||++..++|+..|..+++++..++.+. +.|. ... .-..++-.+.... -.++|||+
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDEL 964 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDEL 964 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecc
Confidence 346679999999999999999999999999999997766431 1111 000 0011222222222 58999999
Q ss_pred ccccCCcCCCCCcchHHHHHHHHHHHHHhh---------CCCCCCCeEEEEEeCCCC------CCChhhcCCCCcceEEE
Q 022768 135 DAIGGRRFSEGTSADREIQRTLMELLNQLD---------GFDQLGKVKMIMATNRPD------VLDPALLRPGRLDRKIE 199 (292)
Q Consensus 135 d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~~vi~t~~~~~------~l~~~l~~~~r~~~~i~ 199 (292)
+.- .....++|..+++.-. ...+++.+.+.+|-|+|. .++.+++. || ..++
T Consensus 965 NLA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 765 6778888888887532 225666788888888764 36778887 88 7788
Q ss_pred ccCCCHHHHHHHHHHHHc
Q 022768 200 IPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 200 l~~p~~~~r~~i~~~~~~ 217 (292)
|..-..++...|+...+.
T Consensus 1031 FddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1031 FDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred cccCcHHHHHHHHhccCc
Confidence 888788888888776553
No 289
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1e-05 Score=78.28 Aligned_cols=199 Identities=22% Similarity=0.262 Sum_probs=124.1
Q ss_pred ccccccc-HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEec
Q 022768 31 YSAVGGL-SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVS 99 (292)
Q Consensus 31 ~~~l~g~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~~~~~ 99 (292)
++.++|. ++.++++.+.+.+ ...++-+|+|.||+|||.++.-++... +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5778888 8888888888765 233678999999999999999999876 234555555
Q ss_pred cchh--ccccChHHHHHHHHHHHhh-hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 100 SAII--DKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
..+. ..+.++.+..++.+...+. .....||+|||+|.+.+.... .. .....+.+......+.+++|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------~~---~~d~~nlLkp~L~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------YG---AIDAANLLKPLLARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------ch---HHHHHHhhHHHHhcCCeEEEe
Confidence 5433 3456778888888888877 445678899999999654322 11 222222222112234599999
Q ss_pred EeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC--------CCCCHHHHH--HHcCCCCHHH
Q 022768 177 ATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--------GEIDYEAVV--KLAEGFNGAD 241 (292)
Q Consensus 177 t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~--------~~~~~~~l~--~~~~g~~~~d 241 (292)
||...+ .-+|++.+ || ..+.++.|+.+....++......+..+ .......+. ..+..+-+.-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~ 398 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDC 398 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchh
Confidence 886422 35788887 88 556788888766555655444331111 001111122 2233445556
Q ss_pred HHHHHHHHHHHHHH
Q 022768 242 LRNVCTEAGMSAIR 255 (292)
Q Consensus 242 i~~l~~~a~~~a~~ 255 (292)
...++++|......
T Consensus 399 aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 399 AIDLEDEAAALVKS 412 (898)
T ss_pred cccHHHHHHHHHhh
Confidence 66777777765533
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.31 E-value=8.8e-06 Score=62.86 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE--EEEeccchhcccc-ChHHHHHHHHHHHhhhCCCEEEEEccccccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIIDKYI-GESARLIREMFGYARDHQPCIIFMDEIDAIG 138 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~ 138 (292)
.+.++..+.|.|++|+||||+++.++......- +.++......... =......+..+..+....|.++++||...
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~-- 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN-- 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc--
Confidence 357788999999999999999999998764321 1111110000000 01222333445666667889999999643
Q ss_pred CCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 139 GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
..+......+.+++..+ +..++.++++.+
T Consensus 100 --------~LD~~~~~~l~~~l~~~-------~~til~~th~~~ 128 (144)
T cd03221 100 --------HLDLESIEALEEALKEY-------PGTVILVSHDRY 128 (144)
T ss_pred --------CCCHHHHHHHHHHHHHc-------CCEEEEEECCHH
Confidence 23666677777777654 135777777654
No 291
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.30 E-value=1.9e-05 Score=68.71 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=93.3
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc------
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK------ 105 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~------ 105 (292)
..+.+.+.+++.+...+-.- . -.-+.+++|+|.+|||||.+++.+.+.++.+.+.+++.+....
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~-~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN-S---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cCccchHHHHHHHHHHhCCC-C---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 45678888888888876331 0 0234567999999999999999999999888877776544321
Q ss_pred ---------ccChH----HHHHHHH---HHH---hhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 106 ---------YIGES----ARLIREM---FGY---ARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 106 ---------~~~~~----~~~~~~~---~~~---~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
..|.. ...+... +.. +... ..-.|++|.+|.+- +.+......+..+...
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~el--- 144 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLYEL--- 144 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHHHH---
Confidence 01110 1111111 111 1111 23578999999982 2223333333333333
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 166 FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
.+.+.+.++.+....+..-..=.+ ...-.+++||.|+.++...|+.+--.
T Consensus 145 -~~~~~i~iils~~~~e~~y~~n~g-~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 145 -LNEPTIVIILSAPSCEKQYLINTG-TLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred -hCCCceEEEEeccccHHHhhcccC-CCCceEEecCCCCHHHHHHHHhcCCc
Confidence 223455555555443321110001 12236789999999999998875443
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.30 E-value=1.2e-05 Score=67.11 Aligned_cols=110 Identities=18% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc-----------------------------c--
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY-----------------------------I-- 107 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~-----------------------------~-- 107 (292)
|++++..+++.|++|+|||+++..++... +..++++...+..... .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 46778899999999999999976555433 4555555533211100 0
Q ss_pred ChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 108 GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
......+..+........|.+++||++-.+... ..+......+.+++..+.. . +..+++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 001223333444444456889999999765311 1122333455566555432 1 33566666543
No 293
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.30 E-value=2.6e-06 Score=71.65 Aligned_cols=85 Identities=27% Similarity=0.548 Sum_probs=60.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH------hcCCcEEEEeccchhccccChHHHHHHHHHHHhh-------------
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIAS------NIDANFLKVVSSAIIDKYIGESARLIREMFGYAR------------- 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 122 (292)
.+.+...+|+.||.|.|||.+++.+.. .+..+++++||..+.+... +..+|..++
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a------msalfghvkgaftga~~~r~gl 277 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA------MSALFGHVKGAFTGARESREGL 277 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH------HHHHHhhhccccccchhhhhhh
Confidence 445566799999999999999998873 4577899999999876432 223333332
Q ss_pred --hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHh
Q 022768 123 --DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (292)
Q Consensus 123 --~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 163 (292)
....++||+||+..++ ...+..|+..+++.
T Consensus 278 lrsadggmlfldeigelg-----------adeqamllkaieek 309 (531)
T COG4650 278 LRSADGGMLFLDEIGELG-----------ADEQAMLLKAIEEK 309 (531)
T ss_pred hccCCCceEehHhhhhcC-----------ccHHHHHHHHHHhh
Confidence 2456899999998883 34455666666654
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.29 E-value=6e-05 Score=75.48 Aligned_cols=183 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc-
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK- 105 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~- 105 (292)
||..-..++-.+.-.+.|... ...+.++|+||+|.||||++..++...+ ++.-+......+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~----------------~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~ 71 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA----------------NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQP 71 (903)
T ss_pred CCCCccccCcchHHHHHHhcc----------------cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCH
Confidence 333345666666555555332 2345799999999999999999998766 5444333211100
Q ss_pred --c----c--------C---------------hHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHH
Q 022768 106 --Y----I--------G---------------ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 155 (292)
Q Consensus 106 --~----~--------~---------------~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~ 155 (292)
+ . + .....+..++..... ..|.+|+|||+|.+- +......
T Consensus 72 ~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~ 141 (903)
T PRK04841 72 ERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT----------NPEIHEA 141 (903)
T ss_pred HHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHH
Confidence 0 0 0 001112222222222 568899999999871 2334445
Q ss_pred HHHHHHHhhCCCCCCCeEEEEEeCCCCCCC-hhhcCCCCcceEEEcc--CCCHHHHHHHHHHHHcCccCCCCCCHHHHHH
Q 022768 156 LMELLNQLDGFDQLGKVKMIMATNRPDVLD-PALLRPGRLDRKIEIP--LPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (292)
Q Consensus 156 l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~-~~l~~~~r~~~~i~l~--~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~ 232 (292)
+..++... .+++.+|++++....++ ..++..+.+ ..+... +.+.++..+++....... ........+..
T Consensus 142 l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~~~-~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~ 213 (903)
T PRK04841 142 MRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRDQL-LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCD 213 (903)
T ss_pred HHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcCcc-eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHH
Confidence 55666542 24566666665532232 122211122 233333 779999999988765421 12334577888
Q ss_pred HcCCCCHHHHHHH
Q 022768 233 LAEGFNGADLRNV 245 (292)
Q Consensus 233 ~~~g~~~~di~~l 245 (292)
.+.|+ |.-++.+
T Consensus 214 ~t~Gw-p~~l~l~ 225 (903)
T PRK04841 214 DVEGW-ATALQLI 225 (903)
T ss_pred HhCCh-HHHHHHH
Confidence 88884 4344433
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.28 E-value=8.1e-06 Score=66.62 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=25.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 60 ~~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.+..+..++|.||+|+||||+++.++...
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3445556789999999999999999998533
No 296
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=1.1e-05 Score=63.27 Aligned_cols=107 Identities=27% Similarity=0.394 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcE--EEEeccchhc-------c---cc--ChHHHHHHHHHHHhhhCCCEE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIID-------K---YI--GESARLIREMFGYARDHQPCI 128 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--~~~~~~~~~~-------~---~~--~~~~~~~~~~~~~~~~~~~~i 128 (292)
+.++..+.|.|++|+||||+++.++..+...- +.++...... . +. =......+..+..+....|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 56788899999999999999999998774322 2333221110 0 00 011222334455556667899
Q ss_pred EEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 129 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 129 l~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+++||...= .+......+.+++..... .+..++.+++..+.
T Consensus 102 ~ilDEp~~~----------lD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 142 (157)
T cd00267 102 LLLDEPTSG----------LDPASRERLLELLRELAE----EGRTVIIVTHDPEL 142 (157)
T ss_pred EEEeCCCcC----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 999997532 256666777777766532 13457777776543
No 297
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.27 E-value=1.5e-05 Score=62.99 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=37.7
Q ss_pred HHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 118 ~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
++.+....|.+|+=||- +...++.....++.++.+++. .+..|+.+|++.+.++
T Consensus 148 IARAiV~~P~vLlADEP----------TGNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 148 IARAIVNQPAVLLADEP----------TGNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHccCCCeEeecCC----------CCCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHHHH
Confidence 33444478899999984 444578888888888888753 3667888888654433
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.26 E-value=1.2e-05 Score=68.57 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKV 97 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~ 97 (292)
.+....+..+++++.-.++..+.|++.+.. +...++|.|++|+||||+++++...+.. .++.+
T Consensus 49 ~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti 114 (264)
T cd01129 49 ILDKKNQILDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred EeCCccCCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE
Confidence 333444456778876556666777666543 2456899999999999999999877743 23333
Q ss_pred ecc-ch-----hccc-cChHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 98 VSS-AI-----IDKY-IGESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 98 ~~~-~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
... ++ .... ...........+..+....|.+++++|+-
T Consensus 115 Edp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 115 EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 211 11 1000 11112234566667777899999999994
No 299
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.26 E-value=6.4e-06 Score=67.69 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.+.++..+.|.||+|||||||+..++.-.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346778889999999999999999998533
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.26 E-value=9.9e-06 Score=64.64 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-------------EEEEe---------ccch-hccccCh--HHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------------FLKVV---------SSAI-IDKYIGE--SARLIRE 116 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~-------------~~~~~---------~~~~-~~~~~~~--~~~~~~~ 116 (292)
.+.++..+.|.||+|+|||||++.++...|.. +..+. .... ....... .....+.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 35778889999999999999999996422211 11110 0000 0000000 1122334
Q ss_pred HHHHhhhCC--CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 117 MFGYARDHQ--PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 117 ~~~~~~~~~--~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.+..+.... |.++++||.-. ..+......+.+.+..+.. .+..+|.++++.+
T Consensus 97 ~laral~~~~~p~llLlDEPt~----------~LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~ 150 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPST----------GLHQQDINQLLEVIKGLID----LGNTVILIEHNLD 150 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 455555667 89999999643 2366777777777766531 2455777777654
No 301
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.25 E-value=6.3e-06 Score=68.65 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=32.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|+..+..++|+|+||+|||+++..++... +..+++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57778889999999999999999999744 6677777765
No 302
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.25 E-value=8.9e-06 Score=68.21 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCc
Q 022768 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRL 194 (292)
Q Consensus 115 ~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 194 (292)
+.+++.+....|.+|++||--.. -+-..|-.+++++..+.. ..+..+|++.++. +-+.+-+.++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~----------LDi~~Q~evl~ll~~l~~---~~~~tvv~vlHDl---N~A~ryad~~ 209 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSH----------LDIAHQIEVLELLRDLNR---EKGLTVVMVLHDL---NLAARYADHL 209 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccc----------cCHHHHHHHHHHHHHHHH---hcCCEEEEEecCH---HHHHHhCCEE
Confidence 34455566688899999996433 366677777777777652 2356788888754 3333322221
Q ss_pred -----ceEEEccCCCHHHHHHHHHHHH
Q 022768 195 -----DRKIEIPLPNEQSRMEILKIHA 216 (292)
Q Consensus 195 -----~~~i~l~~p~~~~r~~i~~~~~ 216 (292)
+..+....|..--..+.++..+
T Consensus 210 i~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 210 ILLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred EEEECCeEEeecCcchhcCHHHHHHHh
Confidence 2334455565444445555544
No 303
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.24 E-value=1e-06 Score=65.80 Aligned_cols=31 Identities=29% Similarity=0.682 Sum_probs=27.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
|+|.|+||+||||+++.++..++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999888776554
No 304
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.24 E-value=2.3e-05 Score=65.22 Aligned_cols=134 Identities=16% Similarity=0.309 Sum_probs=76.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcE--EEEeccchhccc---c-----------ChHHHHH-------HHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIIDKY---I-----------GESARLI-------REMFGY 120 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--~~~~~~~~~~~~---~-----------~~~~~~~-------~~~~~~ 120 (292)
..+..+++.|++|||||++++.+...+...+ +.+........+ . ...+..+ ......
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 3355799999999999999999998774422 222211111110 0 0001111 111111
Q ss_pred hhh---CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceE
Q 022768 121 ARD---HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRK 197 (292)
Q Consensus 121 ~~~---~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 197 (292)
... ..+.+|++||+-. .......+..++.. ...-++.+|..++....+++.++. -....
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEE
Confidence 111 2367999999732 11123345555543 223468899999999999999987 55555
Q ss_pred EEccCCCHHHHHHHHHHHH
Q 022768 198 IEIPLPNEQSRMEILKIHA 216 (292)
Q Consensus 198 i~l~~p~~~~r~~i~~~~~ 216 (292)
+-+. .+......+++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 5565 46666666666544
No 305
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=9.1e-06 Score=64.69 Aligned_cols=108 Identities=24% Similarity=0.366 Sum_probs=66.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchhc------------------cccCh-------HHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIID------------------KYIGE-------SARLI 114 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~~------------------~~~~~-------~~~~~ 114 (292)
.+.++..+.|.||+|+||||+++.++...... -+.++...+.. .+... .....
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 36778899999999999999999999876321 11122111100 00000 01112
Q ss_pred HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 115 ~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
+..+..+....|.++++||--. +.+......+.+++..+.. +..+|+++++.+.+
T Consensus 104 rl~la~al~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 158 (171)
T cd03228 104 RIAIARALLRDPPILILDEATS----------ALDPETEALILEALRALAK-----GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHH
Confidence 2334555567889999999643 3366777778887776531 35677888876544
No 306
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=80.94 Aligned_cols=138 Identities=22% Similarity=0.244 Sum_probs=93.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc------cc-cCh--HHHHH-HHHHHHhhhCCCEEEEEcccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------KY-IGE--SARLI-REMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~------~~-~~~--~~~~~-~~~~~~~~~~~~~il~lDe~d 135 (292)
++++++-|.||+|||++..++|+..|..+++++.++-.+ .. +++ .+-.. ..-|-.+.. ....++|||++
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 567999999999999999999999999999999765322 11 111 00000 111212222 23689999997
Q ss_pred cccCCcCCCCCcchHHHHHHHHHHHHHhh---------CCCCCCCeEEEEEeCCCC------CCChhhcCCCCcceEEEc
Q 022768 136 AIGGRRFSEGTSADREIQRTLMELLNQLD---------GFDQLGKVKMIMATNRPD------VLDPALLRPGRLDRKIEI 200 (292)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~~vi~t~~~~~------~l~~~l~~~~r~~~~i~l 200 (292)
.- .+...+.|...++.-. .+..++++.|.++-|+.+ .++..+.. || .++.+
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~ 1687 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKM 1687 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEe
Confidence 65 5666666666665422 223345676777766533 48888887 89 77888
Q ss_pred cCCCHHHHHHHHHHHHcC
Q 022768 201 PLPNEQSRMEILKIHAAG 218 (292)
Q Consensus 201 ~~p~~~~r~~i~~~~~~~ 218 (292)
..++.+....|......+
T Consensus 1688 d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1688 DGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccccchHHHHHHhhCCc
Confidence 999888888888777663
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.22 E-value=1.2e-05 Score=64.58 Aligned_cols=109 Identities=22% Similarity=0.308 Sum_probs=65.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchhcc-------ccC----------------------hH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDK-------YIG----------------------ES 110 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~~~-------~~~----------------------~~ 110 (292)
.+.++..+.|.||+|+||||+++.++...... -+.++....... ..+ ..
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35778899999999999999999999876321 222322211100 000 00
Q ss_pred HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 111 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 111 ~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
....+..+..+....|.++++||.-. ..+......+.+++..+.. ..+..+|+++++.+.
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTS----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 11122334444557889999999643 2366677777777776532 113467777776553
No 308
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.21 E-value=1.9e-05 Score=72.33 Aligned_cols=78 Identities=23% Similarity=0.364 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc------Ch--------HHHHHHHHHHHhhhC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI------GE--------SARLIREMFGYARDH 124 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~ 124 (292)
|+.++..++|.|+||+||||++..++... +.++++++..+...... +. ....+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67888899999999999999999998755 34677777543322110 00 001123444455556
Q ss_pred CCEEEEEcccccccC
Q 022768 125 QPCIIFMDEIDAIGG 139 (292)
Q Consensus 125 ~~~il~lDe~d~l~~ 139 (292)
+|.+++||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 789999999998754
No 309
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.21 E-value=1.8e-05 Score=63.40 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=66.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchhc-----------------cccC----------hHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIID-----------------KYIG----------ESAR 112 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~~-----------------~~~~----------~~~~ 112 (292)
.+.++..+.|.||+|+||||+++.++...... -+.++...+.. .+.. ....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 36778899999999999999999999875321 12222111100 0000 0112
Q ss_pred HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 113 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 113 ~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
..+..+..+....|.++++||.-. ..+......+.+++..+. . +..+|+++++.+.+
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTV----------GLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 223445556667899999999643 236777777888777653 1 34677777766543
No 310
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.21 E-value=1.1e-05 Score=59.75 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..|.|++-+++.+.+.+...+.+. .-..+..+-|+|++|||||.+++.+|+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 458999999999999988765431 12223445589999999999999999986
No 311
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.21 E-value=8.6e-06 Score=68.27 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|++.+..++++|+||+|||+++.+++... +.+++++...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 57888999999999999999999997543 5566665543
No 312
>PRK10536 hypothetical protein; Provisional
Probab=98.20 E-value=2.7e-05 Score=65.18 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+..+.+.......+...+.. ...+++.||+|||||+++.+++..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556677777777777666532 347899999999999999999884
No 313
>PHA00729 NTP-binding motif containing protein
Probab=98.20 E-value=4.2e-06 Score=68.81 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+++|+|+||+||||+|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 314
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.20 E-value=1.4e-05 Score=62.05 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..++|+||+|+|||++.|.+|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 45778889999999999999999999755
No 315
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.19 E-value=0.00033 Score=61.59 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=50.3
Q ss_pred CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC---------------CCChh-
Q 022768 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---------------VLDPA- 187 (292)
Q Consensus 124 ~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~---------------~l~~~- 187 (292)
..+-|++|||+|++ ..+....+++.++.+-. .+++++|.+.+... .....
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~~---~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLLD---FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhcC---CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 34679999999999 55555555555555433 36788888775321 01111
Q ss_pred hcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 188 LLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 188 l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
+.. .++..+.+|.|+..+...++...+.
T Consensus 237 LeK--iiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 237 LEK--IIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred HHh--hcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 222 5677889999998888877776644
No 316
>PRK04296 thymidine kinase; Provisional
Probab=98.17 E-value=3.5e-05 Score=62.43 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCcEEEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI---DANFLKV 97 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~ 97 (292)
...+++||+|+||||++..++.++ +..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999998888765 4455544
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.17 E-value=2.5e-05 Score=61.85 Aligned_cols=104 Identities=29% Similarity=0.428 Sum_probs=63.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEe--------ccc--hhc-----c----ccC--hHHHHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVV--------SSA--IID-----K----YIG--ESARLIREMF 118 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~--------~~~--~~~-----~----~~~--~~~~~~~~~~ 118 (292)
.+.++..+.|.||+|+||||+++.++...... -+.++ ..+ +.. . ... ......+..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 35778899999999999999999999876321 01111 000 000 0 000 0112223445
Q ss_pred HHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 119 ~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
..+....|.++++||-.. ..+......+.+++... ...+|.++++.+
T Consensus 103 aral~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 103 ARLLLHKPKFVFLDEATS----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 555667889999999643 23666777777777653 245777777653
No 318
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.17 E-value=4.5e-05 Score=69.73 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=87.6
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcC--CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc-------chh
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVG--IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-------AII 103 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~-------~~~ 103 (292)
.|.|.+.+|+.|.-.+-. +.+....-| ++-.-++|++|.|-+.||.|++++.+......-...-+ .-.
T Consensus 302 SI~GH~~vKkAillLLlG---GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG---GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHHhc---cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 378999999999887643 222221111 33355699999999999999999998763322111000 000
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh------CC--CCCCCeEEE
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------GF--DQLGKVKMI 175 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~--~~~~~~~vi 175 (292)
.......++.+.. +..-....+|++|||||.+ +.....++.+.+++-. ++ .-+.+|.|+
T Consensus 379 TtD~eTGERRLEA--GAMVLADRGVVCIDEFDKM-----------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 379 TTDQETGERRLEA--GAMVLADRGVVCIDEFDKM-----------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eeccccchhhhhc--CceEEccCceEEehhcccc-----------cchhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 0001111222210 1111134589999999998 3333345556665532 11 223489999
Q ss_pred EEeCCCC-------------CCChhhcCCCCcceEE-EccCCCH
Q 022768 176 MATNRPD-------------VLDPALLRPGRLDRKI-EIPLPNE 205 (292)
Q Consensus 176 ~t~~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~ 205 (292)
+++|+.. .++..+++ ||+..+ .+...+.
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDIDA 487 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEEEEeccccc
Confidence 9998642 26677888 887644 3344433
No 319
>PHA02624 large T antigen; Provisional
Probab=98.16 E-value=1.3e-05 Score=74.37 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
|++..+.++|+||+|||||+++.++++.++..++.+++..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 4566778999999999999999999999977777777443
No 320
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.16 E-value=1.5e-05 Score=66.84 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~ 101 (292)
|++.+..+.|+|+||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 57788889999999999999999998543 25667776544
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.15 E-value=3.1e-05 Score=61.74 Aligned_cols=106 Identities=25% Similarity=0.406 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchh---------------c---cccC-------hHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAII---------------D---KYIG-------ESARLIR 115 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~---------------~---~~~~-------~~~~~~~ 115 (292)
+.++..+.|.||+|+|||||++.++...... -+.++...+. . .+.. ......+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 5678889999999999999999999865321 1112111110 0 0000 1122234
Q ss_pred HHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 116 EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 116 ~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
..+..+....|.++++||.-. ..+......+.+++..+.. .+..+|+++++.+
T Consensus 105 v~la~al~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNS----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHhcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 455666668899999999643 3377777777777776532 2456777777654
No 322
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2.6e-05 Score=62.18 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=65.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchh-----------------ccccC-h--------HHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAII-----------------DKYIG-E--------SARLI 114 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~-----------------~~~~~-~--------~~~~~ 114 (292)
+.++..+.|.||+|+||||+++.++...... -+.++..... ..+.+ . .....
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 5678889999999999999999999865221 1111110000 00111 1 11122
Q ss_pred HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 115 ~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
+..+..+....|.++++||... ..+......+.+++..+.. .+..+|+++++.+
T Consensus 103 rv~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~~----~g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTS----------GLDPESRREFWELLRELKK----EGKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEECCCHH
Confidence 3455566668899999999643 3367777788888776542 1345777777654
No 323
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.15 E-value=1.5e-05 Score=66.09 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|+..+..++|+|+||+|||+++..+|... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 57788889999999999999999999765 4566666543
No 324
>PRK08118 topology modulation protein; Reviewed
Probab=98.14 E-value=7.1e-06 Score=65.03 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=30.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
.|+|+|+||+||||+++.+++.++.+++.++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999998887743
No 325
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.7e-05 Score=68.59 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=67.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC--CcEEEEeccchhccccC--------------hHHHHHHHHHHHhhhCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID--ANFLKVVSSAIIDKYIG--------------ESARLIREMFGYARDHQ 125 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~--~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 125 (292)
|+-++..+||-|.||.|||||+-.++..+. .+++++...+-.+.... -.+..+..+.+.+...+
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 456778899999999999999988887762 37888886654332111 12344567777777889
Q ss_pred CEEEEEcccccccCCcCCCCCcch---HHHHHHHHHHHH
Q 022768 126 PCIIFMDEIDAIGGRRFSEGTSAD---REIQRTLMELLN 161 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~~~~~---~~~~~~l~~~l~ 161 (292)
|.+++||-++.++...-++..+.- +++...|.++-+
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999765544333333 334444444443
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.13 E-value=1.8e-05 Score=64.50 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=41.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCc----EEEEecc-chhc---------cccChHHHHHHHHHHHhhhCCCEEEEEcc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDAN----FLKVVSS-AIID---------KYIGESARLIREMFGYARDHQPCIIFMDE 133 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~----~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~il~lDe 133 (292)
.++|.||+|+||||++++++..+..+ ++.+... ++.. ...+.........+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 48899999999999999999877422 2222111 1100 00111122344555666667899999999
Q ss_pred c
Q 022768 134 I 134 (292)
Q Consensus 134 ~ 134 (292)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.13 E-value=5.4e-05 Score=63.60 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|++++..++|.|+||+|||+++..++... +.+++++...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 57889999999999999999998776532 5566665533
No 328
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.13 E-value=1.5e-05 Score=76.49 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++++..+.|.|++|+||||++|.+.+..
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46778889999999999999999999766
No 329
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=4.1e-05 Score=61.79 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..+...-|+||+|+||||+++.+-+..
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 5667778999999999999999998643
No 330
>PRK07261 topology modulation protein; Provisional
Probab=98.12 E-value=8.4e-06 Score=64.88 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
.++|+|+||+||||+++.+++.++.+++..+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999998887766443
No 331
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=0.00014 Score=71.65 Aligned_cols=192 Identities=11% Similarity=0.164 Sum_probs=116.6
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe---ccchhcc-ccCh
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV---SSAIIDK-YIGE 109 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~---~~~~~~~-~~~~ 109 (292)
++|++.....|..+.... ....+..+++.|.+|+|||.+++.+.+.......++- +..+... ....
T Consensus 2 l~GRe~ev~~Ll~~f~~v----------~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~ 71 (849)
T COG3899 2 LYGRETELAQLLAAFDRV----------SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSP 71 (849)
T ss_pred CCchHhHHHHHHHHHHHH----------hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHH
Confidence 689999999998887764 1234557889999999999999999987744311111 1101000 0000
Q ss_pred HHHHHHHHH-------------------------------------------------------------------HHhh
Q 022768 110 SARLIREMF-------------------------------------------------------------------GYAR 122 (292)
Q Consensus 110 ~~~~~~~~~-------------------------------------------------------------------~~~~ 122 (292)
..+.++.++ ..+.
T Consensus 72 lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~ 151 (849)
T COG3899 72 LVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTA 151 (849)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHh
Confidence 000000000 0111
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh--CCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEc
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l 200 (292)
..+|-|+|+||+|-. +......+..++.... .++. .-+..+.+....+....++...+ ..|.+
T Consensus 152 ~~~plVi~leDlhWa-----------D~~SL~lL~~lm~~~~~~~~~~---n~v~~~h~~~~~~~~~~~~~~~i-~~I~L 216 (849)
T COG3899 152 EEHPLVIVLEDLHWA-----------DSASLKLLQLLMDRIAIGAYRD---NEVLLLHPLRPTLGEILKSATNI-TTITL 216 (849)
T ss_pred ccCCeEEEEeccccc-----------ChhHHHHHHHHHHhcchhhhhc---cccccCCCccchhhHHhhcCCce-eEEec
Confidence 245889999999876 6666666666666543 1111 11222222223334444443233 68899
Q ss_pred cCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 022768 201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGM 251 (292)
Q Consensus 201 ~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~ 251 (292)
.+.+..+-..++...++..........+.+.+.+.| +|-=+.++++....
T Consensus 217 ~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~~ 266 (849)
T COG3899 217 APLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLKALYE 266 (849)
T ss_pred CcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHHHHHh
Confidence 999999999999998876444444557788889999 88778777776665
No 332
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=3.2e-05 Score=62.99 Aligned_cols=94 Identities=26% Similarity=0.285 Sum_probs=55.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCcEEEEeccch-hccccCh--HH-----------HHHHHHHHHhhh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI--------DANFLKVVSSAI-IDKYIGE--SA-----------RLIREMFGYARD 123 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l--------~~~~~~~~~~~~-~~~~~~~--~~-----------~~~~~~~~~~~~ 123 (292)
..+.|+.||||+||||+++-+|+-+ +..+..++...- .....+. .. -.-..+...++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4568999999999999999999866 222333332211 1111111 00 011234444566
Q ss_pred CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 124 ~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
..|.|+++||+... +...++...++ .++.+|.|++-
T Consensus 217 m~PEViIvDEIGt~-------------~d~~A~~ta~~--------~GVkli~TaHG 252 (308)
T COG3854 217 MSPEVIIVDEIGTE-------------EDALAILTALH--------AGVKLITTAHG 252 (308)
T ss_pred cCCcEEEEeccccH-------------HHHHHHHHHHh--------cCcEEEEeecc
Confidence 88999999999543 22233334433 47889998863
No 333
>PRK09354 recA recombinase A; Provisional
Probab=98.11 E-value=3.2e-05 Score=67.86 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=51.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|++.++.+.|+||+|+|||+++-.++... +..+++++..+-... .....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 47788889999999999999998887543 666777665542211 01112222323333334
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 45678999999988864
No 334
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.10 E-value=1.2e-05 Score=66.23 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+..+||||+||+||||+|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999863
No 335
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.09 E-value=2.4e-05 Score=70.53 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+-|+||+|+||||++|.+....
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHccc
Confidence 5778899999999999999999999654
No 336
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.09 E-value=4.4e-06 Score=77.07 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=46.5
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-CcEEEE
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-ANFLKV 97 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~-~~~~~~ 97 (292)
.-|++++|++++++++.+++..... .++ .....++|.||||+|||++++.+++.+. .+++.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 3578999999999999999854321 112 3456788999999999999999999773 244443
No 337
>PRK05973 replicative DNA helicase; Provisional
Probab=98.09 E-value=7.9e-05 Score=62.13 Aligned_cols=39 Identities=33% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|+.++..++|.|+||+|||+++-.++... |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67888899999999999999998887644 6666666544
No 338
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.07 E-value=6.8e-06 Score=70.43 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=61.9
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---EEEEecc-
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSS- 100 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~~~~~~~- 100 (292)
...+.+++++.-.....+.+.+++... +....+++|.|++|+||||++++++..+... ++.+...
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred ccccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 445668888877666666666666543 2346789999999999999999999988544 2222211
Q ss_pred chh--c----cccC-hHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 101 AII--D----KYIG-ESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 101 ~~~--~----~~~~-~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
++. + .... ........++..+....|.++++.|+-
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 0 0000 122334566777788899999999995
No 339
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.07 E-value=3.2e-05 Score=70.10 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=65.8
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
.+....-..+++++.......+.+.+.+..| ..-+|++||.|+||||++.++...++.+...+...
T Consensus 227 il~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p--------------~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 227 ILDKDQVILDLEKLGMSPFQLARLLRLLNRP--------------QGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred EeccccccCCHHHhCCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3344445677888877777788888887653 45688999999999999999999886544322211
Q ss_pred ---------chhccccCh-HHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 101 ---------AIIDKYIGE-SARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 101 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
.+....+.. ..-.....++....+.|+||++.|+-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111110000 11112345556667899999999994
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.07 E-value=5.7e-05 Score=64.26 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|++++..++|+|+||+|||+++-.++... +.+++++...
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56778889999999999999999887643 5566666643
No 341
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=1.3e-05 Score=68.39 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+++|.||+|+||||+++.++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999998743
No 342
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.06 E-value=2.7e-05 Score=64.45 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+..+.-+.|.||+||||||++|.+-+...
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 356677789999999999999999997663
No 343
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.06 E-value=7.7e-05 Score=66.68 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc--CCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~ 141 (292)
..+.++++.||+||||||++.+++... ... ..+....+.... . ..... ......+|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L----~---~~~lg--~v~~~DlLI~DEvgylp~-- 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNI----S---TRQIG--LVGRWDVVAFDEVATLKF-- 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHH----H---HHHHh--hhccCCEEEEEcCCCCcC--
Confidence 557899999999999999999988762 100 111111211110 0 11111 123457999999988632
Q ss_pred CCCCCcchHHHHHHHHHHHHH
Q 022768 142 FSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~ 162 (292)
....+....+...+..
T Consensus 275 -----~~~~~~v~imK~yMes 290 (449)
T TIGR02688 275 -----AKPKELIGILKNYMES 290 (449)
T ss_pred -----CchHHHHHHHHHHHHh
Confidence 1244455666665554
No 344
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.06 E-value=5.6e-05 Score=61.46 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc--CCcE--EEEeccch---------------hccccC-hHH-----------
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI--DANF--LKVVSSAI---------------IDKYIG-ESA----------- 111 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l--~~~~--~~~~~~~~---------------~~~~~~-~~~----------- 111 (292)
+.++..+.|.||+|+|||||++.++... ...- +.++...+ ...+.. ...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~ 111 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhcc
Confidence 5778899999999999999999999876 3211 11111000 000000 111
Q ss_pred ----HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 112 ----RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 112 ----~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
...+..+..+....|.++++||... ..+......+.+++..+.. .+..+|.++++.+
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTS----------GLDSSSALQVMSLLRRLAD----TGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCch
Confidence 1112334444557889999999643 3367777778787776532 1445777777653
No 345
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.06 E-value=8.7e-06 Score=66.16 Aligned_cols=123 Identities=16% Similarity=0.177 Sum_probs=56.1
Q ss_pred EEEEcCCCChHHHHHHHH-HH-hc--CCcEEEEeccchhcc-ccChHHHHH----------------HHHHHHhhhCCCE
Q 022768 69 VLLYGPPGTGKTLLARAI-AS-NI--DANFLKVVSSAIIDK-YIGESARLI----------------REMFGYARDHQPC 127 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~l-a~-~l--~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~ 127 (292)
.+++|.||+|||..|-.. .. .+ |.+++. |...+.-. ........+ .....-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 688999999999977444 32 22 555554 43322110 000000000 0011111111468
Q ss_pred EEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCC
Q 022768 128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 128 il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p 203 (292)
+++|||++.+++.+..... .....+ +.+.. ....+.-++.+|..+..+++.++. .....+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc----cchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999876533111 111222 33333 333477899999999999999986 66666655433
No 346
>PHA02774 E1; Provisional
Probab=98.05 E-value=3.2e-05 Score=71.50 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcE-EEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEccc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANF-LKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEI 134 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~ 134 (292)
.+..++++|+||||||||+++.++++.++..+ ..+|..... .++.+..+ .+++|||+
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F-------------wLqpl~d~--ki~vlDD~ 488 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF-------------WLQPLADA--KIALLDDA 488 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc-------------ccchhccC--CEEEEecC
Confidence 44456899999999999999999999986554 335542211 02222222 59999998
No 347
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.05 E-value=5.1e-05 Score=62.10 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+..+..++|+||+|+||||+++.++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34556799999999999999999993
No 348
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.05 E-value=3.1e-05 Score=64.44 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---C------CcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---D------ANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~------~~~~~~~~~~ 101 (292)
|+..+..+.|+|+||+|||+++..++... + ..+++++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 57788889999999999999999998653 2 4566666543
No 349
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.05 E-value=8e-05 Score=61.45 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 022768 67 KGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~ 88 (292)
+.++|+||+|+||||+++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 350
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=8.2e-06 Score=69.15 Aligned_cols=29 Identities=45% Similarity=0.560 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+..+..+-+.||+|+||||+++.+|...
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 35678889999999999999999999654
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.04 E-value=0.00011 Score=61.84 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=26.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
+..+..++|.||+|+||||+++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 456788999999999999999999998754
No 352
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=7.4e-05 Score=59.86 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchh--------------------ccccC-----------h
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAII--------------------DKYIG-----------E 109 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~--------------------~~~~~-----------~ 109 (292)
+.++..+.|.||+|+||||+++.++...... -+.++...+. ..+.+ .
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 5678889999999999999999999765321 1111111000 00000 0
Q ss_pred HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
.....+..+..+....|.++++||-. .+.+......+.+++..+.. ..+..+|.++++.+.
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~----------~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~ 163 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPT----------SALDPITRREVRALLKSLQA---QLGITVVLVTHDLDE 163 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 11223344556666788999999963 33377777788887776542 113457777776543
No 353
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.03 E-value=6.7e-06 Score=72.04 Aligned_cols=29 Identities=48% Similarity=0.538 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++.-+-|-||+||||||+++.+|.--
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35667778899999999999999999543
No 354
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.03 E-value=6.2e-05 Score=69.62 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=61.7
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEEec-
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVS- 99 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~~~- 99 (292)
......+++++.-.++..+.+.+.+.. +...++++||+|+||||+++++.+.+.. .++.+..
T Consensus 214 ~~~~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDp 279 (486)
T TIGR02533 214 KTAVRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDP 279 (486)
T ss_pred CccCCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCC
Confidence 334456788876566667777776643 2445889999999999999988887743 2333321
Q ss_pred -----cchhcccc-ChHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 100 -----SAIIDKYI-GESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 100 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
.......+ .............+....|.++++.|+-
T Consensus 280 vE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 280 VEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11111111 1111233455666677899999999984
No 355
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.03 E-value=2.8e-05 Score=62.49 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccch----------------hc------ccc-ChHHHHH---
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI----------------ID------KYI-GESARLI--- 114 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~----------------~~------~~~-~~~~~~~--- 114 (292)
+.++..+.|.|++|+||||+++.++...... -+.++...+ .. .+. ....+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 5778889999999999999999999865321 111111000 00 000 0111111
Q ss_pred ---------HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 115 ---------REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 115 ---------~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
+..+..+....|.++++||--. ..+......+.+++..+.. .+..+|.++++.+
T Consensus 103 ~~LS~G~~qrl~la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 165 (182)
T cd03215 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTR----------GVDVGAKAEIYRLIRELAD----AGKAVLLISSELD 165 (182)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 2234444557889999999633 3367777777777776532 2456777777653
No 356
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=7.5e-05 Score=66.20 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=62.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cEEEEeccch----------------hccccChHHHHH---HHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLKVVSSAI----------------IDKYIGESARLI---REMF 118 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~~~~~~~~~----------------~~~~~~~~~~~~---~~~~ 118 (292)
+..+...+|.||+|+||||+++.+++.... .++.+...+. .+.+.......+ ..++
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 344677999999999999999999987633 2222222221 011111111111 1222
Q ss_pred HHhh----hCCCEEEEEcccccccCCcCC-------C-CCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe
Q 022768 119 GYAR----DHQPCIIFMDEIDAIGGRRFS-------E-GTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (292)
Q Consensus 119 ~~~~----~~~~~il~lDe~d~l~~~~~~-------~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~ 178 (292)
..+. .....+|++||++++...-.. . +.+.+......+..++..-......+.+.+|+|+
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2222 234579999999998532211 1 1223444444455555544333345678888875
No 357
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=0.00035 Score=63.59 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=95.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc---------------c-----ChHHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY---------------I-----GESARLIREMFGYA 121 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~ 121 (292)
++..++++|++|+||||++..+|..+ +..+..+.+..+.... . ......+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46779999999999999999999876 4455555544332100 0 01112223333333
Q ss_pred hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC-CCh--hhcCCCCcceEE
Q 022768 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV-LDP--ALLRPGRLDRKI 198 (292)
Q Consensus 122 ~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~-l~~--~l~~~~r~~~~i 198 (292)
... .+|+||..-.+. .+......+..+... .....+++++.+..... ++. .+.....+ .-+
T Consensus 174 ~~~--DvVIIDTAGr~~---------~d~~lm~El~~l~~~----~~pdevlLVvda~~gq~av~~a~~F~~~l~i-~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA---------LEEDLIEEMKEIKEA----VKPDEVLLVIDATIGQQAKNQAKAFHEAVGI-GGI 237 (437)
T ss_pred hcC--CEEEEECCCccc---------chHHHHHHHHHHHHH----hcccceeEEEeccccHHHHHHHHHHHhcCCC-CEE
Confidence 333 689999885441 122223333333222 22235555555443322 111 11110011 122
Q ss_pred EccCCCHHHHHH-HHHHHHc----------CccC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH---------Hh
Q 022768 199 EIPLPNEQSRME-ILKIHAA----------GIAK--HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI---------RA 256 (292)
Q Consensus 199 ~l~~p~~~~r~~-i~~~~~~----------~~~~--~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~---------~~ 256 (292)
-+.-.|...+.. ++..... +..+ -...+.+.++.+.-| -+|+..+++.|...-. +-
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~~~ 315 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVEKM 315 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444432 2221111 1111 133466777776654 3488888876655311 11
Q ss_pred cCCcccHHHHHHHHHHHhh
Q 022768 257 ERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 257 ~~~~i~~~~~~~a~~~~~~ 275 (292)
.....+.+|+.+-++.+..
T Consensus 316 ~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 316 MKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred HcCCcCHHHHHHHHHHHHh
Confidence 2346788888887777764
No 358
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.02 E-value=0.0012 Score=59.19 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHH-HHHHHhcCCcEEEEeccchhc
Q 022768 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA-RAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~-~~la~~l~~~~~~~~~~~~~~ 104 (292)
.+..+.|+.++.. .+..-|+++||.|+||+.++ ..+.+. ...++.++|..+..
T Consensus 2 ~e~~~~L~~wL~e-------------~~~TFIvV~GPrGSGK~elV~d~~L~~-r~~vL~IDC~~i~~ 55 (431)
T PF10443_consen 2 KEAIEQLKSWLNE-------------NPNTFIVVQGPRGSGKRELVMDHVLKD-RKNVLVIDCDQIVK 55 (431)
T ss_pred chHHHHHHHHHhc-------------CCCeEEEEECCCCCCccHHHHHHHHhC-CCCEEEEEChHhhh
Confidence 3566778888765 34556888899999999999 444443 33488888876654
No 359
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.02 E-value=6.6e-06 Score=65.43 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++..++|+|+||+||||+++.++..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999998887544
No 360
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.02 E-value=5e-05 Score=63.25 Aligned_cols=108 Identities=24% Similarity=0.337 Sum_probs=63.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEeccchhcc--------------------------c-----
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAIIDK--------------------------Y----- 106 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~~~~~~--------------------------~----- 106 (292)
|++.+..+++.|+||+|||+++..++... +.+++++...+.... .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 57888999999999999999998877433 677777664322210 0
Q ss_pred --cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 107 --IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 107 --~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
.......+..+...+...++.+++||-+..+.. ..........+..+...+.. .++.++++.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~------~~~~~~~r~~l~~l~~~l~~----~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL------YDDPEELRRFLRALIKFLKS----RGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT------SSSGGGHHHHHHHHHHHHHH----TTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh------cCCHHHHHHHHHHHHHHHHH----CCCEEEEEEc
Confidence 012233344444555555668999999988821 11123333444445544432 3555666655
No 361
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.01 E-value=2.4e-05 Score=63.71 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=25.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
.+.++|.|++|||||++++.+...+ +..++.+...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4568889999999999999988665 4455544433
No 362
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.01 E-value=4.2e-05 Score=67.83 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC----cEEEEecc-chh---------ccccChHHHHHHHHHHHhhhCCCEEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSS-AII---------DKYIGESARLIREMFGYARDHQPCIIF 130 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~----~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~il~ 130 (292)
+...++|.||+|+||||+++++++.+.. .++.+... ++. ....+.........+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3567999999999999999999987642 22222111 110 001121122345556667778999999
Q ss_pred Ecccc
Q 022768 131 MDEID 135 (292)
Q Consensus 131 lDe~d 135 (292)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99983
No 363
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.00 E-value=2.2e-05 Score=64.58 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+-|.|++|+||||+++.++.-.
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 6778999999999999999999999644
No 364
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.99 E-value=7.8e-05 Score=61.25 Aligned_cols=29 Identities=38% Similarity=0.606 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+||||+++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778899999999999999999999865
No 365
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.99 E-value=0.00011 Score=60.13 Aligned_cols=107 Identities=23% Similarity=0.288 Sum_probs=63.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc--CC--cEEEEeccchhc-------------------cccCh---------
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI--DA--NFLKVVSSAIID-------------------KYIGE--------- 109 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l--~~--~~~~~~~~~~~~-------------------~~~~~--------- 109 (292)
.+.++..+.|.|++|+||||+++.++... .. --+.++...+.. .+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 35778899999999999999999999873 11 112222111100 00000
Q ss_pred -----HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 110 -----SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 110 -----~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.....+..+..+....|.++++||-- ...+......+.+++..+.. .+..+|.+++..+
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~L~~~~~----~~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPD----------SGLDIDALRLVAEVINKLRE----EGKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 01112233444555788999999963 23366677777777776532 1345777777654
No 366
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=9.1e-05 Score=60.62 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 57788999999999999999999998754
No 367
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.98 E-value=5.3e-05 Score=66.18 Aligned_cols=74 Identities=18% Similarity=0.396 Sum_probs=47.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEecc-chh----c---cc-----cChHHHHHHHHHHHhhhCCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSS-AII----D---KY-----IGESARLIREMFGYARDHQP 126 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~-~~~----~---~~-----~~~~~~~~~~~~~~~~~~~~ 126 (292)
-+..+.+++|.||+|+||||++++++..+... .+.+... ++. . .. .+........++..+....|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 35668899999999999999999999877432 2222110 100 0 00 01112234566777777889
Q ss_pred EEEEEcccc
Q 022768 127 CIIFMDEID 135 (292)
Q Consensus 127 ~il~lDe~d 135 (292)
.++++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999983
No 368
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.98 E-value=4.3e-05 Score=64.30 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67888899999999999999988877644 667776663
No 369
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.98 E-value=5.6e-05 Score=71.13 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=26.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
++++..+.|.||+|+||||+++.+++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67899999999999999999999997663
No 370
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.97 E-value=5.9e-05 Score=61.30 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=62.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~ 141 (292)
|......++|.|+-|+|||++++.|+... ..+. ..... ..+.... +..+ -++.|||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~-----~~d~--~~~~~---~kd~~~~----l~~~--~iveldEl~~~---- 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY-----FSDS--INDFD---DKDFLEQ----LQGK--WIVELDELDGL---- 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh-----ccCc--cccCC---CcHHHHH----HHHh--HheeHHHHhhc----
Confidence 44555668899999999999999996551 1111 11110 0111111 1111 38999999887
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhCC----------CCCCCeEEEEEeCCCCCCCh-hhcCCCCcceEEEccC
Q 022768 142 FSEGTSADREIQRTLMELLNQLDGF----------DQLGKVKMIMATNRPDVLDP-ALLRPGRLDRKIEIPL 202 (292)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~~~~----------~~~~~~~vi~t~~~~~~l~~-~l~~~~r~~~~i~l~~ 202 (292)
.......+..++..-... .-....++|+|+|..+-+.. .--+ || ..+.+..
T Consensus 108 -------~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 108 -------SKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred -------chhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 344445666666543211 11125778999998764432 2333 66 5555544
No 371
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.97 E-value=0.00013 Score=59.24 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+|||||++.++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 36778899999999999999999999865
No 372
>PRK04328 hypothetical protein; Provisional
Probab=97.97 E-value=0.00018 Score=60.87 Aligned_cols=38 Identities=34% Similarity=0.411 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
|++++..++|.|+||+|||+++..++... +.++++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 57788999999999999999998776532 445555543
No 373
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.97 E-value=4.1e-05 Score=66.33 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=35.4
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
...|.+++|||- +++-+......+.+++..+.. .++..|+.+++.++++
T Consensus 152 ~~~P~lliLDEP----------t~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~ 200 (293)
T COG1131 152 LHDPELLILDEP----------TSGLDPESRREIWELLRELAK---EGGVTILLSTHILEEA 200 (293)
T ss_pred hcCCCEEEECCC----------CcCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHH
Confidence 467899999995 345577777888888777642 1337789999877654
No 374
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=0.00011 Score=60.38 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+-|.||+|+|||+++|.+...+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 35678889999999999999999999766
No 375
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.95 E-value=6.1e-05 Score=63.13 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=68.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE--EEEeccchhcc-------------------------ccCh--HH
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIIDK-------------------------YIGE--SA 111 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~--~~~~~~~~~~~-------------------------~~~~--~~ 111 (292)
+.+..+..+-|.|++|+||||+++.+.+.....- +.+...++... +..+ ..
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3467789999999999999999999998775332 22222211110 0000 11
Q ss_pred HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 112 ~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+.-+-.++++..-.|.+++.||.-..+ +...+..+.+++..+... -++..++.+++.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~---~~lt~lFIsHDL 170 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEE---LGLTYLFISHDL 170 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHH---hCCeEEEEEEEH
Confidence 222344555666789999999986553 566777777777766522 255677777654
No 376
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=0.00011 Score=59.55 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=62.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEeccch-----------h---ccccC-hHHHH----------
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSAI-----------I---DKYIG-ESARL---------- 113 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~~~-----------~---~~~~~-~~~~~---------- 113 (292)
+.++..+.|.||+|+||||+++.++.... .--+.++...+ . ..+.. .....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 56788899999999999999999997421 11111111110 0 00010 11111
Q ss_pred -----HHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 114 -----IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 114 -----~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.+..+..+....|.++++||... ..+......+.+++..+.. .+..+|.++++.+
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTS----------GLDSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCc----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 12223444457889999999643 3367777777777776542 2455777777654
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.94 E-value=1.1e-05 Score=65.05 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecc-chh-------cc------ccChHHHHHHHHHHHhhhCCCE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSS-AII-------DK------YIGESARLIREMFGYARDHQPC 127 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~-~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~ 127 (292)
..+..++|.||+|+||||++++++..+.. ..+.+... ++. .. ..+.........+..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45788999999999999999999987742 12222111 000 00 0001122345666667778899
Q ss_pred EEEEcccc
Q 022768 128 IIFMDEID 135 (292)
Q Consensus 128 il~lDe~d 135 (292)
++++.|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999983
No 378
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.94 E-value=0.00016 Score=58.56 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999755
No 379
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.93 E-value=3.5e-05 Score=59.14 Aligned_cols=32 Identities=34% Similarity=0.739 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
++++|+||+||||+++.+++.++ ...++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 78999999999999999999988 444444443
No 380
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.93 E-value=0.00015 Score=59.18 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCCC-ceEEEEcCCCChHHHHHHHHH
Q 022768 63 IKPP-KGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 63 ~~~~-~~vll~G~~G~GKT~l~~~la 87 (292)
+.++ +.++|+||+|+||||+++.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 4455 469999999999999999998
No 381
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.93 E-value=3.4e-05 Score=66.97 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=44.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc-chh-------ccccChHHHHHHHHHHHhhhCCCEEEEEc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID-----ANFLKVVSS-AII-------DKYIGESARLIREMFGYARDHQPCIIFMD 132 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~-----~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~il~lD 132 (292)
..+++|.|++|+||||+++++++.+. ..++.+... ++. ..........+..++..+....|..+++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 56899999999999999999998863 222222211 000 00001111145567777778889999999
Q ss_pred ccc
Q 022768 133 EID 135 (292)
Q Consensus 133 e~d 135 (292)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 382
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=7.3e-05 Score=62.38 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..++|.|++|+||||+++.++.-+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 367788899999999999999999998763
No 383
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.92 E-value=3.7e-05 Score=63.59 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778899999999999999999999865
No 384
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.92 E-value=8.6e-05 Score=63.62 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 46778889999999999999999887654 556666554
No 385
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.91 E-value=0.00012 Score=60.02 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999865
No 386
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.91 E-value=0.00024 Score=57.28 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 022768 69 VLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la 87 (292)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999999
No 387
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.91 E-value=8.4e-05 Score=58.99 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
.++|.|+||+|||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766544
No 388
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.91 E-value=2.6e-05 Score=67.98 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778889999999999999999999865
No 389
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.91 E-value=5.4e-05 Score=61.84 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999765
No 390
>PRK10436 hypothetical protein; Provisional
Probab=97.90 E-value=8.8e-05 Score=67.97 Aligned_cols=103 Identities=18% Similarity=0.348 Sum_probs=64.2
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---EE
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FL 95 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~~ 95 (292)
...+.......+++++.-.+...+.+++.+.. +...++++||.|+||||++.++...++.+ ++
T Consensus 185 lRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~ 250 (462)
T PRK10436 185 LRLLQQVQQALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINIC 250 (462)
T ss_pred EEEeccccCCCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEE
Confidence 33333444456788876556667777777654 35669999999999999998888777433 22
Q ss_pred EEec------cchhccccC-hHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 96 KVVS------SAIIDKYIG-ESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 96 ~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
.+-. .......++ .........+..+....|.+|++.|+-
T Consensus 251 TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 251 SVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred EecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 2221 111110111 112234566667777899999999984
No 391
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.90 E-value=8.9e-05 Score=70.03 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=65.2
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc---EE
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FL 95 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~---~~ 95 (292)
...+....+..+++++.-.++..+.+.+++..+ ...++++||+|+||||++.++.+.++.+ ++
T Consensus 283 lRll~~~~~~~~l~~lg~~~~~~~~l~~~~~~~--------------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~ 348 (564)
T TIGR02538 283 LRILDSSAAQLDIDKLGFEPDQKALFLEAIHKP--------------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNIS 348 (564)
T ss_pred EEeecCccccCCHHHcCCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEE
Confidence 334444445567888766666777777776542 5568999999999999999888877432 22
Q ss_pred EEe------ccchhccccC-hHHHHHHHHHHHhhhCCCEEEEEcccc
Q 022768 96 KVV------SSAIIDKYIG-ESARLIREMFGYARDHQPCIIFMDEID 135 (292)
Q Consensus 96 ~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~lDe~d 135 (292)
.+- .......... .........+..+....|.+|++.|+-
T Consensus 349 tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 349 TAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred EecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 211 1111111111 111234566667778899999999994
No 392
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=0.00021 Score=59.21 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
..+..++|.||+|+|||++++.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999999999999987
No 393
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.90 E-value=0.00013 Score=59.88 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+|||||++.++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999865
No 394
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.90 E-value=0.00011 Score=64.67 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccchhc--c-------c---------------cC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIID--K-------Y---------------IG 108 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~~~~--~-------~---------------~~ 108 (292)
|+..+..+.|+|+||+|||++|..+|-.. +..+++++...-.. + + ..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 57778889999999999999999987422 24567776544110 0 0 00
Q ss_pred hHH---HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe
Q 022768 109 ESA---RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (292)
Q Consensus 109 ~~~---~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~ 178 (292)
... ..+..+........+.+|+||-+-.++.....+... ..+.+..+..++..+..+....++.+|+|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~-l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGE-LAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccc-hHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 011 112222222333457899999998876543222111 122233344444433322222366677664
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=0.00021 Score=58.44 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
..+..++|.||+|+|||++++.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999999873
No 396
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.89 E-value=8.4e-05 Score=64.83 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~ 101 (292)
|+..+..+.|+|+||+|||+++..+|-.. +..+++++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 57788889999999999999999887422 34677777554
No 397
>PRK06762 hypothetical protein; Provisional
Probab=97.89 E-value=4.1e-05 Score=60.54 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
..++|+|+||+||||+++.+++.++..+..++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4688999999999999999999997666666655444
No 398
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=61.02 Aligned_cols=33 Identities=30% Similarity=0.628 Sum_probs=29.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
..++|++|.||+||||++..+|..++.+++.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 457999999999999999999999998888765
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.88 E-value=9.5e-05 Score=65.05 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecc-chh-----------cc--ccChHHHHHHHHHHHhhhCCCE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSS-AII-----------DK--YIGESARLIREMFGYARDHQPC 127 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~-~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~ 127 (292)
....+++|.|++|+||||++++++..... .++.+... ++. .. ..+........++..+....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34678999999999999999999988753 22222100 000 00 0111122355677777888899
Q ss_pred EEEEcccc
Q 022768 128 IIFMDEID 135 (292)
Q Consensus 128 il~lDe~d 135 (292)
.+++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999984
No 400
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00017 Score=59.46 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
+..+..+-|.|++|+|||||++.++......
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 5668889999999999999999999877543
No 401
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.87 E-value=6.3e-05 Score=62.89 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999765
No 402
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=0.0002 Score=58.91 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778889999999999999999999765
No 403
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.87 E-value=0.00018 Score=57.03 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=58.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcccc-----------------ChHHHHHHHHHHHhhhCCCEEEEE
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYI-----------------GESARLIREMFGYARDHQPCIIFM 131 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~il~l 131 (292)
++|.|++|+|||++|..++...+.+++++......+... .+....+...+.... .+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988777787776554332110 011122233322211 4569999
Q ss_pred cccccccCCcCCCCCcc-hHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 132 DEIDAIGGRRFSEGTSA-DREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 132 De~d~l~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
|-+..+..+-....... .......+..++..+.. ....+|+++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 99888754332211000 12233444555555542 23345555653
No 404
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.87 E-value=9.7e-05 Score=64.49 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678889999999999999999999866
No 405
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.87 E-value=0.00016 Score=59.62 Aligned_cols=28 Identities=43% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778899999999999999999999865
No 406
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=4.4e-05 Score=67.98 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 35678889999999999999999999765
No 407
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.86 E-value=0.00026 Score=58.92 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
|++++..++|.|+||+|||+++..++... +.++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 57788899999999999999998887543 6666666654
No 408
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.85 E-value=0.00013 Score=65.03 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=44.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc-chh-----------ccccChHHHHHHHHHHHhhhCCCEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID-----ANFLKVVSS-AII-----------DKYIGESARLIREMFGYARDHQPCI 128 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~-----~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i 128 (292)
...++++||+|+||||+++++++.+. ..++.+... ++. ....+.........+..+....|.+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 44689999999999999999988762 234433211 110 0111111123445666777789999
Q ss_pred EEEcccc
Q 022768 129 IFMDEID 135 (292)
Q Consensus 129 l~lDe~d 135 (292)
+++.|+-
T Consensus 229 I~vGEiR 235 (372)
T TIGR02525 229 IGVGEIR 235 (372)
T ss_pred EeeCCCC
Confidence 9999984
No 409
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.85 E-value=0.00022 Score=58.80 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35778889999999999999999999865
No 410
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.85 E-value=0.00021 Score=58.73 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678899999999999999999999764
No 411
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.6e-05 Score=68.57 Aligned_cols=28 Identities=36% Similarity=0.636 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+-+.||+|.||||+++.+.+-.
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 5778999999999999999999999866
No 412
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00017 Score=57.81 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..+..+-+-||+|+||||+++.+|.-+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 4668889999999999999999999877
No 413
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.84 E-value=4.1e-05 Score=67.74 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35778889999999999999999999765
No 414
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.84 E-value=0.0002 Score=59.55 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999999999865
No 415
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.84 E-value=0.00017 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++..+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999865
No 416
>PTZ00202 tuzin; Provisional
Probab=97.84 E-value=0.0013 Score=59.32 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=48.7
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
...+.+|.+.....|...+... ....+..+.|.|++|+|||++++.+...++.+.+.++..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3467899999999999887642 123345788999999999999999999998777776655
No 417
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.83 E-value=0.00016 Score=59.96 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778889999999999999999999765
No 418
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.83 E-value=0.00018 Score=60.38 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 36778899999999999999999999765
No 419
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.83 E-value=4.8e-05 Score=66.38 Aligned_cols=29 Identities=41% Similarity=0.539 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+..+..+.|.||+||||||+++.+|.-.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35667889999999999999999999644
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00031 Score=62.94 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..++++||+|+||||++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998765
No 421
>PRK03839 putative kinase; Provisional
Probab=97.83 E-value=1.7e-05 Score=63.63 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999998886654
No 422
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.82 E-value=7.2e-05 Score=61.14 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.|++|+||||+++.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778899999999999999999999765
No 423
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.82 E-value=0.00014 Score=63.93 Aligned_cols=40 Identities=25% Similarity=0.451 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~ 101 (292)
|++.+..+.|+|+||+|||+++-.++... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 57778889999999999999999998653 33677777654
No 424
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=6.7e-05 Score=61.99 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+||||+++.++...
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999765
No 425
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.2e-05 Score=71.24 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++|+..+-+.||+|+||||++..+-+-.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 37889999999999999999999998755
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.81 E-value=1.9e-05 Score=63.10 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
++.+++.|+||+||||+++.+++.++.+++.++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 457899999999999999999999887776554433
No 427
>PRK00625 shikimate kinase; Provisional
Probab=97.81 E-value=2.2e-05 Score=62.52 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+|+|+|.||+||||+++.+++.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988776
No 428
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.81 E-value=4.5e-05 Score=66.44 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778899999999999999999999765
No 429
>PRK13947 shikimate kinase; Provisional
Probab=97.81 E-value=2.2e-05 Score=62.36 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+|+|.|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987655
No 430
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.80 E-value=0.00014 Score=69.33 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++++..+.|.|++|+||||+++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999999999999876
No 431
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.80 E-value=0.001 Score=63.88 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=100.1
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--CCcEEEEeccchhc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIID 104 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l--~~~~~~~~~~~~~~ 104 (292)
||....+.+-.......|.+. ...+-++|.-|.|.||||++-.++... +..+.-+++.+-.+
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~----------------~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dn 77 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA----------------NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDN 77 (894)
T ss_pred CCCCcccccccHHHHHHHhcC----------------CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccC
Confidence 444455555555555544332 335679999999999999999998633 23332223222111
Q ss_pred c-------cc----------C-------------hHHHHHHHHHHHhh-hCCCEEEEEcccccccCCcCCCCCcchHHHH
Q 022768 105 K-------YI----------G-------------ESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (292)
Q Consensus 105 ~-------~~----------~-------------~~~~~~~~~~~~~~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~ 153 (292)
. .. + .....+..++.... ..+|..|||||.|.+- +....
T Consensus 78 dp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~----------~~~l~ 147 (894)
T COG2909 78 DPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS----------DPALH 147 (894)
T ss_pred CHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC----------cccHH
Confidence 0 00 0 01122334444333 3568899999999983 45566
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC-hhhcCCCCcceEE--EccCCCHHHHHHHHHHHHcCccCCCCCCHHHH
Q 022768 154 RTLMELLNQLDGFDQLGKVKMIMATNRPDVLD-PALLRPGRLDRKI--EIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (292)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~-~~l~~~~r~~~~i--~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l 230 (292)
..+..+++. .++++.+|+++.....+. ..++-++-. .+| .-=..+.+|-.+++....+- . -...+.+.|
T Consensus 148 ~~l~fLl~~-----~P~~l~lvv~SR~rP~l~la~lRlr~~l-lEi~~~~Lrf~~eE~~~fl~~~~~l-~-Ld~~~~~~L 219 (894)
T COG2909 148 EALRFLLKH-----APENLTLVVTSRSRPQLGLARLRLRDEL-LEIGSEELRFDTEEAAAFLNDRGSL-P-LDAADLKAL 219 (894)
T ss_pred HHHHHHHHh-----CCCCeEEEEEeccCCCCcccceeehhhH-HhcChHhhcCChHHHHHHHHHcCCC-C-CChHHHHHH
Confidence 666666664 446888888886644332 222211111 122 11235677888887766531 1 234567778
Q ss_pred HHHcCCCCH
Q 022768 231 VKLAEGFNG 239 (292)
Q Consensus 231 ~~~~~g~~~ 239 (292)
...++|+..
T Consensus 220 ~~~teGW~~ 228 (894)
T COG2909 220 YDRTEGWAA 228 (894)
T ss_pred HhhcccHHH
Confidence 888888643
No 432
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=0.00024 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999765
No 433
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.80 E-value=0.00017 Score=63.15 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~ 101 (292)
|+..+..+.|+|+||+|||+++-.+|... +..+++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 57778888999999999999999998663 23677777655
No 434
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.80 E-value=9.7e-05 Score=60.81 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++...
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999765
No 435
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.80 E-value=8.2e-05 Score=66.64 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678889999999999999999999755
No 436
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.80 E-value=9.5e-05 Score=66.75 Aligned_cols=29 Identities=41% Similarity=0.581 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||++|.++..+
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 35778889999999999999999999765
No 437
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.80 E-value=7.6e-05 Score=65.13 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=43.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC-----CcEEEEecc-chh----c--cccChHHHHHHHHHHHhhhCCCEEEEEcc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID-----ANFLKVVSS-AII----D--KYIGESARLIREMFGYARDHQPCIIFMDE 133 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~-----~~~~~~~~~-~~~----~--~~~~~~~~~~~~~~~~~~~~~~~il~lDe 133 (292)
..+++|.|++|+||||++++++.... ..++.+... ++. . ............++..+....|..+++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 56799999999999999999998762 122222211 110 0 00011122345666777778899999999
Q ss_pred c
Q 022768 134 I 134 (292)
Q Consensus 134 ~ 134 (292)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 438
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=6.7e-05 Score=61.78 Aligned_cols=27 Identities=41% Similarity=0.550 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++ .+.|.||+|+||||+++.++..+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5567 88999999999999999999755
No 439
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=5.2e-05 Score=67.96 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678889999999999999999999755
No 440
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.79 E-value=7.4e-05 Score=61.84 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+|||||++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 35678889999999999999999999765
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.79 E-value=0.00041 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
.+...+|+||.|+|||+++++++-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
No 442
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.79 E-value=0.00018 Score=64.05 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+..+..++|.||+|+|||++++.+++...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 56688899999999999999999999763
No 443
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.79 E-value=0.00025 Score=67.63 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
++++..+.|.|++|+||||+++.++...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 6788999999999999999999999876
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.79 E-value=0.00038 Score=58.07 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
|+.++..++|.|+||+|||+++..++... +.++++++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 57889999999999999999998876432 44555554
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=0.00029 Score=58.43 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999865
No 446
>PRK13695 putative NTPase; Provisional
Probab=97.78 E-value=0.00063 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 447
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.78 E-value=6.4e-05 Score=60.75 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=63.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~ 147 (292)
.++|+||+|||||.++-.+|+.++.|++..+...........+.+.. -..... - .=++|||-..- +
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~---~~el~~-~-~RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT---PSELKG-T-RRIYLDDRPLS---------D 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT------SGGGTT---EEEES----GG---------G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC---HHHHcc-c-ceeeecccccc---------C
Confidence 47899999999999999999999999999886554433221111111 001111 1 23788875332 1
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCC---CCcc-eEEEccCCCHHHHHHHHHHHHcCccCC
Q 022768 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRP---GRLD-RKIEIPLPNEQSRMEILKIHAAGIAKH 222 (292)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~---~r~~-~~i~l~~p~~~~r~~i~~~~~~~~~~~ 222 (292)
+.-...+....++..+...... + .+|.-...-+.++.-..+. ..|. .+..++.|+.+....-.+.+..+....
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~-~-~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAH-G-GLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTS-S-EEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHHhcccc-C-ceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 1223334445555555554442 3 3555544433333322221 1233 344778899887776666555544333
No 448
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.77 E-value=0.00031 Score=58.46 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999865
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.00011 Score=60.66 Aligned_cols=29 Identities=41% Similarity=0.563 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778889999999999999999999765
No 450
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=0.0002 Score=60.89 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999765
No 451
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.76 E-value=0.00018 Score=63.70 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 36778889999999999999999999865
No 452
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=9.5e-05 Score=65.70 Aligned_cols=29 Identities=41% Similarity=0.495 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 35678889999999999999999999765
No 453
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.76 E-value=0.00013 Score=59.43 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999865
No 454
>PRK13949 shikimate kinase; Provisional
Probab=97.76 E-value=2.8e-05 Score=61.77 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++|+|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887765
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.76 E-value=2.9e-05 Score=62.56 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.|+|.|++|+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876655
No 456
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.75 E-value=0.00012 Score=64.10 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---C--CcEEEEecc-chh------ccccChHHHHHHHHHHHhhhCCCEEEEEc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---D--ANFLKVVSS-AII------DKYIGESARLIREMFGYARDHQPCIIFMD 132 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~--~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~il~lD 132 (292)
...+++|.|++|+||||++++++... . ..++.+... ++. ..+.......+..++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 36789999999999999999999864 1 122221111 110 00000112235567777788899999999
Q ss_pred ccc
Q 022768 133 EID 135 (292)
Q Consensus 133 e~d 135 (292)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 983
No 457
>PTZ00035 Rad51 protein; Provisional
Probab=97.75 E-value=0.00025 Score=62.61 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
|+..+..+.|+|++|+|||+++..++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 6777888999999999999999998853
No 458
>PRK14530 adenylate kinase; Provisional
Probab=97.75 E-value=3.1e-05 Score=64.00 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999998777644
No 459
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.75 E-value=2.8e-05 Score=62.50 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=25.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
++|.|+||+||||+++.++..++..++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998655544
No 460
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=0.00068 Score=55.12 Aligned_cols=102 Identities=22% Similarity=0.358 Sum_probs=53.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc--------------------ChHHHHHHHHHHHhh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI--------------------GESARLIREMFGYAR 122 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 122 (292)
++.++|.||+|+||||.+--+|..+ +..+--+....+..... ......+...+....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999887777655 44444444333221000 011222333344443
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
...-.+++||=.-+. ..+......+..++.... ...+.++..++.
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~~----~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEALN----PDEVHLVLSATM 125 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHHS----SSEEEEEEEGGG
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhcC----CccceEEEeccc
Confidence 333468888876332 224455556666665542 235566666544
No 461
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00046 Score=54.68 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||.|+||||++|.+|.-+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccC
Confidence 46788899999999999999999998763
No 462
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00031 Score=59.93 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 46778889999999999999999999875
No 463
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.74 E-value=0.00011 Score=65.43 Aligned_cols=28 Identities=46% Similarity=0.542 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 5678889999999999999999999765
No 464
>PRK14532 adenylate kinase; Provisional
Probab=97.74 E-value=3e-05 Score=62.64 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+++|.|+||+||||+++.+|+.++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766544
No 465
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.74 E-value=3.2e-05 Score=60.18 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+++|+|+||+||||+++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4889999999999999999999998887655
No 466
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.74 E-value=0.00027 Score=61.63 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6778899999999999999999999765
No 467
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.74 E-value=0.00023 Score=63.63 Aligned_cols=102 Identities=22% Similarity=0.405 Sum_probs=59.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEEeccchhcccc--ChHHHHHHHHHH-------------------
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSSAIIDKYI--GESARLIREMFG------------------- 119 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~------------------- 119 (292)
..+..++|.|+.|||||++.+++...+.. .++.+.......... |.+. ...|.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~---hs~f~i~~~~~~~~~~~~~~~~~~ 96 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTI---HSFFGIPINNNEKSQCKISKNSRL 96 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcch---HHhcCccccccccccccccccchh
Confidence 45678999999999999999999987743 344333332222111 1110 01110
Q ss_pred HhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC----CCCCCCeEEEEEeC
Q 022768 120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG----FDQLGKVKMIMATN 179 (292)
Q Consensus 120 ~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~vi~t~~ 179 (292)
......-.+|+|||+-.+ .......+...++.+.. ..+.+++.+|+...
T Consensus 97 ~~~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 97 RERLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred hhhhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 001122369999999776 66666666666665543 23455676666553
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.74 E-value=0.00047 Score=64.08 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN----IDANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~----l~~~~~~~~~~ 100 (292)
|++++..++|.|+||+|||+++..++.. .+.+++++...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5788999999999999999999988543 25677666644
No 469
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.74 E-value=0.00031 Score=59.50 Aligned_cols=29 Identities=38% Similarity=0.646 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36778899999999999999999999765
No 470
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.73 E-value=0.00032 Score=66.93 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.|++|+||||+++.+++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 6789999999999999999999999766
No 471
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.73 E-value=0.00033 Score=58.74 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+|||||++.++...
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35678889999999999999999999765
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.72 E-value=0.00037 Score=56.64 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 239 GADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
...|+.+-+-....|...+-+.|...++.++...+..
T Consensus 157 ~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 157 LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 3467777777777788888899999999999887654
No 473
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00011 Score=65.29 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35778889999999999999999999765
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.72 E-value=0.00039 Score=67.19 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN---IDANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~---l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|+..+..++|+||+|+|||+++..++.. .+..+++++..+-... .....+..+..+-..+.
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5778889999999999999999776653 3556666664442220 01112222323333334
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+.+|+||-+..++.
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 45689999999998874
No 475
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00012 Score=65.55 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678889999999999999999999765
No 476
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.71 E-value=0.00027 Score=67.50 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.++++..+.|.|++|+||||+++.+++...
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 367899999999999999999999998763
No 477
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.71 E-value=0.00023 Score=69.23 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
++++..+.|.|++|+||||+++.+++..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6789999999999999999999999766
No 478
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00033 Score=56.55 Aligned_cols=126 Identities=22% Similarity=0.361 Sum_probs=71.7
Q ss_pred cCChHHHHhcC--CCCCceEEEEcCCCChHHHHHHHHHHhc---CCcE--------------------------------
Q 022768 52 LMNPELFLRVG--IKPPKGVLLYGPPGTGKTLLARAIASNI---DANF-------------------------------- 94 (292)
Q Consensus 52 ~~~~~~~~~~~--~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~-------------------------------- 94 (292)
..+.++-.++| ++-+.-++|-|+.|+|||.++..++--+ +..+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 44555666664 5666668888999999999999998432 1111
Q ss_pred --EEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 95 --LKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
+.++...+. .........+..+....+.+...+++||-+..+... .......+++..+..+...++
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~----------~~~~~vl~fm~~~r~l~d~gK- 159 (235)
T COG2874 92 LFFPVNLEPVN-WGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY----------DSEDAVLNFMTFLRKLSDLGK- 159 (235)
T ss_pred EEEEecccccc-cChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc----------ccHHHHHHHHHHHHHHHhCCC-
Confidence 222211111 112234455666666667777789999999877421 112234444444433333444
Q ss_pred EEEEEeCCCCCCChhhcC
Q 022768 173 KMIMATNRPDVLDPALLR 190 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~ 190 (292)
++|.|.| |+.++++...
T Consensus 160 vIilTvh-p~~l~e~~~~ 176 (235)
T COG2874 160 VIILTVH-PSALDEDVLT 176 (235)
T ss_pred EEEEEeC-hhhcCHHHHH
Confidence 3555555 5556665444
No 479
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.70 E-value=0.00071 Score=57.13 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567889999999999999999999875
No 480
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.70 E-value=0.0001 Score=55.76 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
+.++..++|.|+.|+||||+++.+++.++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3557789999999999999999999999754
No 481
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.70 E-value=0.00033 Score=59.68 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=58.0
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHH
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAR 112 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (292)
+|+-.+++++.+.+...-. ..++.+.|+.|.+|+||+++++..|...+..++.+....-. ...+...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL-----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL-----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHHHH-----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH-----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHH
Confidence 4566777777776665442 24567899999999999999999999888888877654321 2234455
Q ss_pred HHHHHHHHhhh-CCCEEEEEccccc
Q 022768 113 LIREMFGYARD-HQPCIIFMDEIDA 136 (292)
Q Consensus 113 ~~~~~~~~~~~-~~~~il~lDe~d~ 136 (292)
.++.++..+.. ..+.+++++|-+.
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHHhccCCCeEEEecCccc
Confidence 66666655543 4578888887543
No 482
>PRK06547 hypothetical protein; Provisional
Probab=97.70 E-value=5.7e-05 Score=60.05 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.....|+|.|++|+||||+++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 44567888899999999999999999887776554
No 483
>PRK13948 shikimate kinase; Provisional
Probab=97.70 E-value=5.4e-05 Score=60.72 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++.+++|+|.+|+||||+++.+++.++.+++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 484
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.70 E-value=0.00047 Score=61.56 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999754
No 485
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.70 E-value=0.00042 Score=54.14 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+.++..+-|+||+|+||||++..+|.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhc
Confidence 57788999999999999999999983
No 486
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.69 E-value=4.4e-05 Score=60.98 Aligned_cols=29 Identities=38% Similarity=0.780 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++|.||||+||||+|+.+++.++.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999997665544
No 487
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.69 E-value=8.3e-05 Score=58.54 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 60 ~~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
++.+..+..+-|.||+|+||||+...+|.-.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 4456778889999999999999999999644
No 488
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.69 E-value=0.00026 Score=69.04 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++++..+.|.|++|+||||+++.++...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999999999999766
No 489
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.69 E-value=0.0002 Score=62.71 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc------C---CcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI------D---ANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l------~---~~~~~~~~~~ 101 (292)
|+.++..+.++|+||+|||+++..++... + ..+++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 57778889999999999999999988532 1 2556666554
No 490
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.69 E-value=0.00046 Score=65.59 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.|++|+||||+++.+++..
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5778999999999999999999999766
No 491
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.69 E-value=0.00028 Score=59.09 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.++++..+.+.|+.|+||||++|.+...+-
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~ 75 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLL 75 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccc
Confidence 468888899999999999999999997663
No 492
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.68 E-value=0.00018 Score=68.35 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
++++..+.|.||+|+||||+++.+++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6789999999999999999999999766
No 493
>PRK14531 adenylate kinase; Provisional
Probab=97.68 E-value=4.9e-05 Score=61.19 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.+++.||||+||||+++.++..++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999998877654
No 494
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00041 Score=58.08 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35778889999999999999999999765
No 495
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.68 E-value=0.00035 Score=66.50 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.|++|+||||+++.++..+
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 36789999999999999999999999876
No 496
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.68 E-value=0.00017 Score=64.24 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++|.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 497
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.67 E-value=0.00032 Score=65.22 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=53.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcccc------C----------------------hH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI------G----------------------ES 110 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~------~----------------------~~ 110 (292)
|+.++..++|.||||+|||+++-.++... +.+++++...+-..... | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 57888999999999999999998888755 55666666443322110 0 11
Q ss_pred HHHHHHHHHHhhhCCCEEEEEccccccc
Q 022768 111 ARLIREMFGYARDHQPCIIFMDEIDAIG 138 (292)
Q Consensus 111 ~~~~~~~~~~~~~~~~~il~lDe~d~l~ 138 (292)
...+..+...+....|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445556666666788999999998763
No 498
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=97.67 E-value=0.00047 Score=61.81 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCE-EEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEE--Ecc
Q 022768 125 QPC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKI--EIP 201 (292)
Q Consensus 125 ~~~-il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i--~l~ 201 (292)
+|. |+||||+|.++... .....+.+.++.+.+.+ .++-|++.|..|.+++..+++ .++..| -+.
T Consensus 254 kPklVfFfDEAHLLF~da-------~kall~~ieqvvrLIRS----KGVGv~fvTQ~P~DiP~~VL~--QLGnrIQHaLR 320 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFNDA-------PKALLDKIEQVVRLIRS----KGVGVYFVTQNPTDIPDDVLG--QLGNRIQHALR 320 (502)
T ss_pred CceEEEEEechhhhhcCC-------CHHHHHHHHHHHHHhhc----cCceEEEEeCCCCCCCHHHHH--hhhhHHHHHHh
Confidence 454 56799999997433 55555555566655543 478899999999999999987 555555 566
Q ss_pred CCCHHHHHHHHHHHHcCccCCCCCCH
Q 022768 202 LPNEQSRMEILKIHAAGIAKHGEIDY 227 (292)
Q Consensus 202 ~p~~~~r~~i~~~~~~~~~~~~~~~~ 227 (292)
.+++.+++.+ +.....+..+...|.
T Consensus 321 AfTP~DqKav-k~aa~tfr~np~~d~ 345 (502)
T PF05872_consen 321 AFTPKDQKAV-KAAAETFRPNPAFDT 345 (502)
T ss_pred cCCHhHHHHH-HHHHHhCCCCccccH
Confidence 6777777665 334444444444443
No 499
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.67 E-value=4.3e-05 Score=59.28 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
++|+|+||+||||+++.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776553
No 500
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.67 E-value=0.0069 Score=52.92 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=31.4
Q ss_pred EEEccCCCHHHHHHHHHHHHcCccCCC-CC---CHHHHHHHcCCCCHHHHHH
Q 022768 197 KIEIPLPNEQSRMEILKIHAAGIAKHG-EI---DYEAVVKLAEGFNGADLRN 244 (292)
Q Consensus 197 ~i~l~~p~~~~r~~i~~~~~~~~~~~~-~~---~~~~l~~~~~g~~~~di~~ 244 (292)
.+.++.++.+|-..+++.+........ .. ..+.+...+.| +++++..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhcc
Confidence 789999999999999998876543332 11 22334444454 8888754
Done!