Query 022768
Match_columns 292
No_of_seqs 150 out of 2111
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 9.2E-51 3.1E-55 358.3 32.2 286 3-289 119-404 (405)
2 4b4t_L 26S protease subunit RP 100.0 9.7E-50 3.3E-54 357.1 29.6 285 3-287 152-436 (437)
3 4b4t_I 26S protease regulatory 100.0 3.5E-49 1.2E-53 349.0 29.1 279 3-281 153-431 (437)
4 4b4t_H 26S protease regulatory 100.0 1.4E-48 4.8E-53 348.2 30.8 275 2-276 179-453 (467)
5 4b4t_M 26S protease regulatory 100.0 7.9E-49 2.7E-53 350.9 25.3 277 3-279 152-428 (434)
6 4b4t_K 26S protease regulatory 100.0 3.6E-47 1.2E-51 340.0 28.3 273 3-275 143-416 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.5E-41 5.1E-46 323.6 10.7 267 23-289 468-762 (806)
8 3cf2_A TER ATPase, transitiona 100.0 4.2E-39 1.4E-43 306.8 21.0 265 23-290 195-481 (806)
9 3h4m_A Proteasome-activating n 100.0 2.6E-37 8.8E-42 265.8 30.2 255 24-278 9-263 (285)
10 3cf0_A Transitional endoplasmi 100.0 2.1E-37 7E-42 268.4 21.0 266 24-289 7-300 (301)
11 3eie_A Vacuolar protein sortin 100.0 3.3E-37 1.1E-41 269.6 21.5 267 21-292 7-320 (322)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.4E-36 8.1E-41 263.9 24.0 262 25-292 5-321 (322)
13 2qp9_X Vacuolar protein sortin 100.0 2.8E-36 9.5E-41 266.8 23.1 273 15-292 34-353 (355)
14 1lv7_A FTSH; alpha/beta domain 100.0 3.9E-35 1.4E-39 248.6 28.9 251 23-274 3-253 (257)
15 2ce7_A Cell division protein F 100.0 4.5E-35 1.6E-39 265.9 29.1 252 23-275 6-258 (476)
16 3hu3_A Transitional endoplasmi 100.0 3.8E-35 1.3E-39 268.4 27.8 264 25-291 197-482 (489)
17 2x8a_A Nuclear valosin-contain 100.0 2.2E-35 7.5E-40 251.9 22.5 253 25-280 3-271 (274)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.3E-34 7.8E-39 244.3 20.4 251 27-278 1-254 (262)
19 2zan_A Vacuolar protein sortin 100.0 1.4E-34 5E-39 262.9 18.4 268 19-292 121-443 (444)
20 3d8b_A Fidgetin-like protein 1 100.0 1.1E-33 3.9E-38 250.5 23.7 268 19-292 71-356 (357)
21 1ixz_A ATP-dependent metallopr 100.0 1.1E-32 3.8E-37 233.1 28.3 247 23-270 7-253 (254)
22 3b9p_A CG5977-PA, isoform A; A 100.0 2.2E-33 7.6E-38 242.7 21.7 272 17-291 6-293 (297)
23 2dhr_A FTSH; AAA+ protein, hex 100.0 4.9E-33 1.7E-37 254.0 23.8 249 27-276 26-274 (499)
24 3vfd_A Spastin; ATPase, microt 100.0 7.9E-33 2.7E-37 247.9 23.9 275 14-292 97-387 (389)
25 1iy2_A ATP-dependent metallopr 100.0 2.1E-31 7.1E-36 228.2 29.1 244 26-270 34-277 (278)
26 2r62_A Cell division protease 100.0 3.5E-35 1.2E-39 250.3 -0.3 261 23-284 2-264 (268)
27 1ypw_A Transitional endoplasmi 100.0 1.2E-33 4.2E-38 273.1 -5.1 258 24-281 469-751 (806)
28 1ypw_A Transitional endoplasmi 100.0 1.2E-27 4E-32 231.4 23.1 264 24-290 196-481 (806)
29 3t15_A Ribulose bisphosphate c 99.9 6.4E-25 2.2E-29 189.1 10.7 176 62-243 32-221 (293)
30 3uk6_A RUVB-like 2; hexameric 99.9 2.4E-23 8.1E-28 184.9 18.7 236 27-289 39-347 (368)
31 3pfi_A Holliday junction ATP-d 99.9 1.6E-22 5.4E-27 177.6 22.4 225 21-275 18-256 (338)
32 2c9o_A RUVB-like 1; hexameric 99.9 1.3E-22 4.5E-27 185.0 19.6 249 26-289 31-454 (456)
33 1hqc_A RUVB; extended AAA-ATPa 99.9 6.2E-22 2.1E-26 172.7 18.1 221 23-274 3-239 (324)
34 3pvs_A Replication-associated 99.9 1.7E-22 5.7E-27 183.1 14.5 217 20-278 14-249 (447)
35 3syl_A Protein CBBX; photosynt 99.9 4.9E-22 1.7E-26 172.3 16.5 224 31-267 29-280 (309)
36 2chg_A Replication factor C sm 99.9 7.3E-21 2.5E-25 156.3 20.8 210 22-271 7-224 (226)
37 2v1u_A Cell division control p 99.9 4.9E-21 1.7E-25 170.6 21.2 225 29-276 16-279 (387)
38 3u61_B DNA polymerase accessor 99.9 1.1E-20 3.7E-25 165.0 15.4 207 21-272 15-236 (324)
39 1njg_A DNA polymerase III subu 99.9 9.6E-20 3.3E-24 151.5 20.3 209 20-270 11-248 (250)
40 2z4s_A Chromosomal replication 99.8 7.4E-20 2.5E-24 165.9 17.6 221 25-274 98-333 (440)
41 1g8p_A Magnesium-chelatase 38 99.8 2E-19 6.9E-24 158.3 19.4 230 23-278 15-327 (350)
42 1sxj_D Activator 1 41 kDa subu 99.8 1.4E-19 4.9E-24 159.4 17.9 216 20-271 25-261 (353)
43 2r44_A Uncharacterized protein 99.8 4.9E-19 1.7E-23 154.9 20.8 220 26-278 21-302 (331)
44 1ofh_A ATP-dependent HSL prote 99.8 2.1E-19 7.3E-24 155.4 18.0 241 32-274 15-300 (310)
45 2qby_B CDC6 homolog 3, cell di 99.8 1.1E-19 3.9E-24 161.9 16.5 214 31-275 19-272 (384)
46 2qby_A CDC6 homolog 1, cell di 99.8 8.3E-19 2.8E-23 156.0 21.5 226 27-275 15-274 (386)
47 1in4_A RUVB, holliday junction 99.8 1.7E-18 5.9E-23 151.6 22.8 225 21-275 14-252 (334)
48 1jr3_A DNA polymerase III subu 99.8 4.4E-19 1.5E-23 157.4 19.1 209 20-270 4-241 (373)
49 1l8q_A Chromosomal replication 99.8 3.4E-19 1.2E-23 155.5 18.0 219 26-273 5-240 (324)
50 1iqp_A RFCS; clamp loader, ext 99.8 1.1E-18 3.8E-23 152.0 20.1 196 20-250 13-216 (327)
51 1sxj_A Activator 1 95 kDa subu 99.8 1.3E-19 4.3E-24 167.7 14.6 227 21-274 28-275 (516)
52 2chq_A Replication factor C sm 99.8 2E-19 6.8E-24 156.2 14.8 211 21-271 6-224 (319)
53 3bos_A Putative DNA replicatio 99.8 5.3E-19 1.8E-23 147.2 16.6 210 23-271 18-241 (242)
54 1fnn_A CDC6P, cell division co 99.8 1.7E-18 5.9E-23 154.3 20.7 222 30-275 15-276 (389)
55 1sxj_B Activator 1 37 kDa subu 99.8 1.4E-18 4.6E-23 151.2 19.3 208 21-272 10-230 (323)
56 1d2n_A N-ethylmaleimide-sensit 99.8 5.1E-19 1.7E-23 150.6 15.3 225 30-272 31-263 (272)
57 3te6_A Regulatory protein SIR3 99.8 1.7E-19 5.9E-24 155.5 12.1 160 34-219 22-214 (318)
58 3m6a_A ATP-dependent protease 99.8 2E-19 6.9E-24 167.0 12.1 225 31-273 80-341 (543)
59 1sxj_E Activator 1 40 kDa subu 99.8 3.3E-18 1.1E-22 150.9 17.3 196 21-253 3-244 (354)
60 1jbk_A CLPB protein; beta barr 99.8 5.8E-19 2E-23 141.6 10.1 163 24-212 14-194 (195)
61 3hws_A ATP-dependent CLP prote 99.8 1E-17 3.6E-22 148.4 18.3 236 33-270 16-346 (363)
62 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-17 4.3E-22 161.3 20.0 224 26-274 180-434 (758)
63 1sxj_C Activator 1 40 kDa subu 99.8 4.2E-18 1.4E-22 149.6 14.1 213 20-271 13-237 (340)
64 3pxg_A Negative regulator of g 99.8 3.5E-18 1.2E-22 156.2 13.5 210 24-274 172-407 (468)
65 4fcw_A Chaperone protein CLPB; 99.8 1.4E-17 4.8E-22 144.2 16.4 206 32-256 17-281 (311)
66 1um8_A ATP-dependent CLP prote 99.8 2.1E-17 7.2E-22 147.1 16.7 236 33-270 22-362 (376)
67 1g41_A Heat shock protein HSLU 99.7 3.8E-17 1.3E-21 146.5 16.3 242 32-275 15-435 (444)
68 3pxi_A Negative regulator of g 99.7 1.7E-17 5.9E-22 160.2 13.9 192 25-257 173-389 (758)
69 3pxi_A Negative regulator of g 99.7 1.2E-16 4E-21 154.4 18.8 203 32-255 491-726 (758)
70 2p65_A Hypothetical protein PF 99.7 6.7E-18 2.3E-22 134.8 8.0 156 24-204 14-187 (187)
71 1qvr_A CLPB protein; coiled co 99.7 1.3E-16 4.3E-21 155.9 18.6 206 25-256 163-395 (854)
72 2bjv_A PSP operon transcriptio 99.7 6.7E-17 2.3E-21 136.9 14.4 205 29-266 3-250 (265)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.8E-17 6E-22 151.6 10.9 210 32-271 22-283 (500)
74 1r6b_X CLPA protein; AAA+, N-t 99.7 3.5E-16 1.2E-20 151.2 17.2 201 33-254 459-716 (758)
75 3f9v_A Minichromosome maintena 99.7 2.5E-17 8.5E-22 154.3 6.7 226 32-276 295-590 (595)
76 3k1j_A LON protease, ATP-depen 99.7 6.1E-16 2.1E-20 145.6 14.5 222 23-272 32-374 (604)
77 1ojl_A Transcriptional regulat 99.7 2.6E-16 9.1E-21 135.8 10.4 206 32-267 2-246 (304)
78 1w5s_A Origin recognition comp 99.6 1.4E-14 4.6E-19 130.1 19.2 228 29-274 19-294 (412)
79 1a5t_A Delta prime, HOLB; zinc 99.6 6.6E-15 2.2E-19 128.8 15.4 174 37-249 7-208 (334)
80 1qvr_A CLPB protein; coiled co 99.6 2.9E-15 9.7E-20 146.4 13.0 209 31-256 557-822 (854)
81 2gno_A DNA polymerase III, gam 99.6 7.4E-14 2.5E-18 120.3 18.5 142 36-216 1-152 (305)
82 3co5_A Putative two-component 99.6 1.3E-15 4.4E-20 116.9 6.6 132 33-203 5-142 (143)
83 3n70_A Transport activator; si 99.6 5.2E-15 1.8E-19 113.7 9.1 112 33-181 2-116 (145)
84 3ec2_A DNA replication protein 99.4 4.4E-13 1.5E-17 106.6 8.6 134 24-182 2-144 (180)
85 2qen_A Walker-type ATPase; unk 99.4 1.2E-10 3.9E-15 101.9 21.8 191 27-247 7-247 (350)
86 3f8t_A Predicted ATPase involv 99.4 7.3E-11 2.5E-15 105.5 19.3 220 34-277 215-487 (506)
87 1ny5_A Transcriptional regulat 99.3 1.4E-11 4.9E-16 109.7 14.7 206 31-269 136-383 (387)
88 2fna_A Conserved hypothetical 99.3 1.6E-10 5.3E-15 101.3 20.4 188 27-248 8-252 (357)
89 3kw6_A 26S protease regulatory 99.3 1.3E-11 4.6E-16 84.0 9.5 76 201-276 1-76 (78)
90 2krk_A 26S protease regulatory 99.3 1.3E-11 4.5E-16 85.4 8.3 77 200-276 8-84 (86)
91 2kjq_A DNAA-related protein; s 99.2 2.3E-11 8E-16 93.6 7.5 100 65-195 35-140 (149)
92 3dzd_A Transcriptional regulat 99.2 4.3E-10 1.5E-14 99.4 15.8 189 32-250 129-358 (368)
93 4akg_A Glutathione S-transfera 99.2 1.1E-10 3.9E-15 123.6 13.9 139 66-218 1267-1433(2695)
94 3cmw_A Protein RECA, recombina 99.2 6.4E-11 2.2E-15 120.7 9.1 154 26-179 1014-1217(1706)
95 3vlf_B 26S protease regulatory 99.1 2.9E-10 9.8E-15 79.1 8.6 75 204-278 2-76 (88)
96 3aji_B S6C, proteasome (prosom 99.1 1.5E-10 5.2E-15 79.7 6.7 76 203-278 1-76 (83)
97 2w58_A DNAI, primosome compone 99.1 1.5E-10 5E-15 93.6 6.7 100 27-137 20-127 (202)
98 4akg_A Glutathione S-transfera 99.1 8.5E-09 2.9E-13 109.5 20.4 186 66-276 645-860 (2695)
99 1jr3_D DNA polymerase III, del 99.0 7.9E-09 2.7E-13 90.4 13.0 182 65-274 17-210 (343)
100 1tue_A Replication protein E1; 98.9 1.7E-09 5.7E-14 86.5 7.3 114 63-203 55-179 (212)
101 2qgz_A Helicase loader, putati 98.9 7.4E-10 2.5E-14 95.5 4.5 98 28-137 120-226 (308)
102 2r2a_A Uncharacterized protein 98.9 2.9E-09 9.8E-14 85.7 7.2 126 67-205 6-155 (199)
103 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.2E-09 4E-14 93.6 5.0 112 63-180 120-235 (331)
104 2dzn_B 26S protease regulatory 98.9 1E-09 3.6E-14 75.2 2.9 69 206-274 1-69 (82)
105 3vkg_A Dynein heavy chain, cyt 98.7 8.9E-08 3E-12 102.6 14.0 139 65-217 1303-1470(3245)
106 1z6t_A APAF-1, apoptotic prote 98.7 2.4E-06 8.3E-11 80.0 21.2 179 28-247 120-329 (591)
107 1ye8_A Protein THEP1, hypothet 98.7 1.7E-07 5.8E-12 74.0 11.1 27 68-94 2-28 (178)
108 3vkg_A Dynein heavy chain, cyt 98.7 1.6E-07 5.6E-12 100.6 14.0 128 66-214 604-751 (3245)
109 1u0j_A DNA replication protein 98.6 7.6E-08 2.6E-12 80.3 7.8 121 65-215 103-250 (267)
110 3sfz_A APAF-1, apoptotic pepti 98.5 6E-06 2E-10 83.6 20.1 185 20-245 112-327 (1249)
111 3cmu_A Protein RECA, recombina 98.5 3E-07 1E-11 95.2 9.9 79 62-140 1423-1520(2050)
112 2w0m_A SSO2452; RECA, SSPF, un 98.4 2.6E-06 8.9E-11 69.6 11.6 37 62-98 19-58 (235)
113 1n0w_A DNA repair protein RAD5 98.4 9.1E-07 3.1E-11 73.0 7.9 78 62-139 20-133 (243)
114 2cvh_A DNA repair and recombin 98.4 9.1E-07 3.1E-11 71.8 7.5 40 62-101 16-55 (220)
115 3hr8_A Protein RECA; alpha and 98.4 1.6E-06 5.6E-11 75.7 9.4 78 62-139 57-153 (356)
116 2ehv_A Hypothetical protein PH 98.3 2E-06 6.7E-11 71.3 9.5 114 62-184 26-185 (251)
117 2zr9_A Protein RECA, recombina 98.3 1.1E-06 3.7E-11 76.9 7.1 78 62-139 57-153 (349)
118 3upu_A ATP-dependent DNA helic 98.3 1.5E-06 5.2E-11 78.9 8.1 58 19-90 11-69 (459)
119 1xp8_A RECA protein, recombina 98.3 3.8E-06 1.3E-10 73.8 10.2 78 62-139 70-166 (366)
120 1svm_A Large T antigen; AAA+ f 98.2 1.1E-06 3.8E-11 77.4 6.0 118 61-199 164-281 (377)
121 2a5y_B CED-4; apoptosis; HET: 98.2 4.2E-05 1.4E-09 71.0 16.6 169 35-243 131-334 (549)
122 4a74_A DNA repair and recombin 98.2 5.2E-06 1.8E-10 67.8 9.2 29 62-90 21-49 (231)
123 2z43_A DNA repair and recombin 98.2 2.4E-06 8.2E-11 74.0 7.0 78 62-139 103-217 (324)
124 1v5w_A DMC1, meiotic recombina 98.2 5.2E-06 1.8E-10 72.4 8.9 78 62-139 118-233 (343)
125 1u94_A RECA protein, recombina 98.2 3.2E-06 1.1E-10 74.0 7.5 78 62-139 59-155 (356)
126 3lda_A DNA repair protein RAD5 98.1 4.8E-06 1.6E-10 74.0 8.0 79 62-140 174-288 (400)
127 3jvv_A Twitching mobility prot 98.1 8.2E-06 2.8E-10 71.4 9.2 98 65-183 122-233 (356)
128 1pzn_A RAD51, DNA repair and r 98.1 5.4E-06 1.8E-10 72.5 7.5 41 61-101 126-175 (349)
129 2b8t_A Thymidine kinase; deoxy 98.1 1.9E-05 6.7E-10 64.3 10.2 72 65-137 11-101 (223)
130 2dr3_A UPF0273 protein PH0284; 98.1 1.9E-05 6.7E-10 65.0 10.4 37 62-98 19-58 (247)
131 2eyu_A Twitching motility prot 98.1 5.6E-06 1.9E-10 69.4 7.0 71 64-134 23-107 (261)
132 3gfo_A Cobalt import ATP-bindi 98.1 3.2E-06 1.1E-10 71.3 5.5 29 63-91 31-59 (275)
133 4gp7_A Metallophosphoesterase; 98.0 7.7E-06 2.6E-10 63.9 6.5 23 63-85 6-28 (171)
134 4g1u_C Hemin import ATP-bindin 98.0 1.7E-05 5.9E-10 66.6 9.0 28 63-90 34-61 (266)
135 2orw_A Thymidine kinase; TMTK, 98.0 2.1E-06 7.3E-11 68.0 3.2 25 66-90 3-27 (184)
136 1qhx_A CPT, protein (chloramph 98.0 4E-06 1.4E-10 65.7 4.6 37 66-102 3-39 (178)
137 3tui_C Methionine import ATP-b 98.0 7.7E-06 2.6E-10 71.5 6.3 30 62-91 50-79 (366)
138 1vpl_A ABC transporter, ATP-bi 98.0 1.1E-05 3.6E-10 67.5 6.9 30 62-91 37-66 (256)
139 3vaa_A Shikimate kinase, SK; s 98.0 3.8E-06 1.3E-10 67.3 3.9 36 63-98 22-57 (199)
140 3io5_A Recombination and repai 98.0 2.1E-05 7.3E-10 67.1 8.4 77 62-139 25-125 (333)
141 1nlf_A Regulatory protein REPA 98.0 3.5E-05 1.2E-09 65.0 9.9 29 62-90 26-54 (279)
142 2iut_A DNA translocase FTSK; n 98.0 0.00014 4.7E-09 67.0 14.2 74 127-213 345-420 (574)
143 3nh6_A ATP-binding cassette SU 98.0 3.8E-05 1.3E-09 65.7 10.0 30 62-91 76-105 (306)
144 3rlf_A Maltose/maltodextrin im 98.0 7.3E-06 2.5E-10 72.1 5.6 30 62-91 25-54 (381)
145 3tif_A Uncharacterized ABC tra 98.0 4.6E-05 1.6E-09 62.7 10.0 29 62-90 27-55 (235)
146 2i1q_A DNA repair and recombin 97.9 1.1E-05 3.8E-10 69.7 6.3 28 62-89 94-121 (322)
147 2pcj_A ABC transporter, lipopr 97.9 3.5E-05 1.2E-09 62.9 9.0 29 63-91 27-55 (224)
148 3fvq_A Fe(3+) IONS import ATP- 97.9 9.2E-06 3.1E-10 70.9 5.6 29 62-90 26-54 (359)
149 2rhm_A Putative kinase; P-loop 97.9 9.6E-06 3.3E-10 64.3 5.0 35 63-97 2-36 (193)
150 2yyz_A Sugar ABC transporter, 97.9 1.7E-05 5.8E-10 69.4 6.9 29 62-90 25-53 (359)
151 1z47_A CYSA, putative ABC-tran 97.9 1.5E-05 5.2E-10 69.5 6.3 29 63-91 38-66 (355)
152 2ius_A DNA translocase FTSK; n 97.9 9E-05 3.1E-09 67.7 11.5 76 125-213 296-374 (512)
153 1cr0_A DNA primase/helicase; R 97.9 9.3E-05 3.2E-09 62.9 11.0 38 61-98 30-71 (296)
154 1zp6_A Hypothetical protein AT 97.9 9.5E-06 3.3E-10 64.3 4.4 40 63-102 6-45 (191)
155 2ff7_A Alpha-hemolysin translo 97.9 7.5E-05 2.6E-09 61.9 9.9 28 63-90 32-59 (247)
156 3cmu_A Protein RECA, recombina 97.9 2.7E-05 9.3E-10 81.0 8.6 78 62-139 1077-1173(2050)
157 3trf_A Shikimate kinase, SK; a 97.9 8.9E-06 3E-10 64.1 3.8 33 66-98 5-37 (185)
158 2r8r_A Sensor protein; KDPD, P 97.8 0.0011 3.9E-08 53.7 16.0 34 67-100 7-43 (228)
159 2nq2_C Hypothetical ABC transp 97.8 0.0001 3.6E-09 61.3 10.3 29 63-91 28-56 (253)
160 2cbz_A Multidrug resistance-as 97.8 5E-05 1.7E-09 62.6 8.2 29 62-90 27-55 (237)
161 2ixe_A Antigen peptide transpo 97.8 7E-05 2.4E-09 63.0 9.0 29 62-90 41-69 (271)
162 2olj_A Amino acid ABC transpor 97.8 0.00013 4.5E-09 61.0 10.6 30 62-91 46-75 (263)
163 2p5t_B PEZT; postsegregational 97.8 0.00011 3.6E-09 61.2 9.8 39 64-102 30-68 (253)
164 2i3b_A HCR-ntpase, human cance 97.8 0.00011 3.6E-09 58.4 9.3 24 67-90 2-25 (189)
165 2ewv_A Twitching motility prot 97.8 2.6E-05 8.8E-10 68.7 6.3 74 61-134 131-218 (372)
166 1y63_A LMAJ004144AAA protein; 97.8 1.2E-05 4.2E-10 63.5 3.6 33 64-96 8-41 (184)
167 1kag_A SKI, shikimate kinase I 97.8 1.8E-05 6.2E-10 61.6 4.5 30 66-95 4-33 (173)
168 3iij_A Coilin-interacting nucl 97.8 1.5E-05 5E-10 62.6 4.0 34 64-97 9-42 (180)
169 2zts_A Putative uncharacterize 97.8 0.00013 4.4E-09 60.1 9.8 38 62-99 26-67 (251)
170 1g29_1 MALK, maltose transport 97.8 0.00014 4.8E-09 63.9 10.5 29 63-91 26-54 (372)
171 1v43_A Sugar-binding transport 97.8 9.2E-05 3.1E-09 65.0 9.2 29 62-90 33-61 (372)
172 3kb2_A SPBC2 prophage-derived 97.8 1.8E-05 6.1E-10 61.4 4.3 31 68-98 3-33 (173)
173 2it1_A 362AA long hypothetical 97.8 3.7E-05 1.3E-09 67.3 6.6 30 62-91 25-54 (362)
174 2r6a_A DNAB helicase, replicat 97.8 0.00014 4.7E-09 65.9 10.6 38 62-99 199-240 (454)
175 2onk_A Molybdate/tungstate ABC 97.8 0.00011 3.9E-09 60.5 9.2 28 63-91 22-49 (240)
176 1vt4_I APAF-1 related killer D 97.8 0.00015 5E-09 71.2 11.1 43 35-89 131-173 (1221)
177 3d31_A Sulfate/molybdate ABC t 97.8 0.00017 5.8E-09 62.8 10.6 30 62-91 22-51 (348)
178 1g5t_A COB(I)alamin adenosyltr 97.8 0.00012 4E-09 58.2 8.6 103 66-181 28-163 (196)
179 2pt7_A CAG-ALFA; ATPase, prote 97.7 3.2E-05 1.1E-09 67.0 5.8 72 64-135 169-250 (330)
180 1zuh_A Shikimate kinase; alpha 97.7 1.7E-05 5.7E-10 61.6 3.6 32 66-97 7-38 (168)
181 2qi9_C Vitamin B12 import ATP- 97.7 0.0001 3.5E-09 61.2 8.5 29 63-91 23-51 (249)
182 2iyv_A Shikimate kinase, SK; t 97.7 1.6E-05 5.6E-10 62.6 3.5 31 68-98 4-34 (184)
183 3qf4_B Uncharacterized ABC tra 97.7 0.00019 6.6E-09 67.2 11.2 30 62-91 377-406 (598)
184 1gvn_B Zeta; postsegregational 97.7 4.5E-05 1.5E-09 64.8 6.3 39 64-102 31-69 (287)
185 3bh0_A DNAB-like replicative h 97.7 0.00011 3.9E-09 63.1 8.8 38 62-99 64-104 (315)
186 3cm0_A Adenylate kinase; ATP-b 97.7 2.3E-05 7.7E-10 61.8 3.8 31 66-96 4-34 (186)
187 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00012 4.1E-09 61.2 8.3 38 66-103 4-44 (260)
188 1via_A Shikimate kinase; struc 97.7 2.8E-05 9.6E-10 60.7 4.1 29 68-96 6-34 (175)
189 1vma_A Cell division protein F 97.7 0.00063 2.2E-08 58.1 12.8 73 64-136 102-197 (306)
190 1oxx_K GLCV, glucose, ABC tran 97.7 0.00014 4.8E-09 63.5 8.8 29 62-90 27-55 (353)
191 4eun_A Thermoresistant glucoki 97.7 3.9E-05 1.3E-09 61.4 4.6 32 64-95 27-58 (200)
192 1knq_A Gluconate kinase; ALFA/ 97.6 4.2E-05 1.4E-09 59.7 4.6 32 65-96 7-38 (175)
193 3thx_B DNA mismatch repair pro 97.6 0.00019 6.7E-09 70.0 10.1 27 62-88 669-695 (918)
194 2q6t_A DNAB replication FORK h 97.6 0.00019 6.6E-09 64.7 9.5 38 62-99 196-237 (444)
195 2c95_A Adenylate kinase 1; tra 97.6 2.2E-05 7.5E-10 62.4 2.9 33 65-97 8-40 (196)
196 3qf4_A ABC transporter, ATP-bi 97.6 0.00027 9.4E-09 66.0 10.7 31 62-92 365-395 (587)
197 2cdn_A Adenylate kinase; phosp 97.6 5.4E-05 1.8E-09 60.5 5.2 34 64-97 18-51 (201)
198 4a82_A Cystic fibrosis transme 97.6 0.00013 4.6E-09 68.0 8.6 31 62-92 363-393 (578)
199 2ze6_A Isopentenyl transferase 97.6 3.7E-05 1.3E-09 64.1 4.0 32 68-99 3-34 (253)
200 3e1s_A Exodeoxyribonuclease V, 97.6 5.9E-05 2E-09 70.2 5.8 33 66-98 204-239 (574)
201 3t61_A Gluconokinase; PSI-biol 97.6 4.6E-05 1.6E-09 61.0 4.4 32 66-97 18-49 (202)
202 3umf_A Adenylate kinase; rossm 97.6 4.9E-05 1.7E-09 61.7 4.5 33 63-95 26-58 (217)
203 2pez_A Bifunctional 3'-phospho 97.6 6.6E-05 2.3E-09 58.8 5.2 37 65-101 4-43 (179)
204 1aky_A Adenylate kinase; ATP:A 97.6 5E-05 1.7E-09 61.6 4.6 32 66-97 4-35 (220)
205 1tf7_A KAIC; homohexamer, hexa 97.6 0.00017 5.7E-09 66.6 8.6 110 62-181 277-417 (525)
206 1tev_A UMP-CMP kinase; ploop, 97.6 4.8E-05 1.7E-09 60.2 4.4 31 66-96 3-33 (196)
207 3tlx_A Adenylate kinase 2; str 97.6 7.2E-05 2.5E-09 61.8 5.5 34 64-97 27-60 (243)
208 3dm5_A SRP54, signal recogniti 97.6 0.00096 3.3E-08 59.7 13.0 195 65-275 99-342 (443)
209 3be4_A Adenylate kinase; malar 97.6 4.3E-05 1.5E-09 62.0 3.8 32 66-97 5-36 (217)
210 1e6c_A Shikimate kinase; phosp 97.6 5.1E-05 1.7E-09 58.9 4.1 29 68-96 4-32 (173)
211 2vli_A Antibiotic resistance p 97.6 3.8E-05 1.3E-09 60.2 3.4 30 66-95 5-34 (183)
212 1zd8_A GTP:AMP phosphotransfer 97.6 5.3E-05 1.8E-09 61.9 4.3 33 65-97 6-38 (227)
213 4f4c_A Multidrug resistance pr 97.6 0.00025 8.7E-09 72.3 10.0 31 62-92 440-470 (1321)
214 1kht_A Adenylate kinase; phosp 97.6 4.8E-05 1.6E-09 60.0 3.8 26 66-91 3-28 (192)
215 3dl0_A Adenylate kinase; phosp 97.6 6.3E-05 2.1E-09 60.8 4.6 30 68-97 2-31 (216)
216 2bwj_A Adenylate kinase 5; pho 97.6 3.9E-05 1.3E-09 61.0 3.3 32 66-97 12-43 (199)
217 3lw7_A Adenylate kinase relate 97.6 5.9E-05 2E-09 58.4 4.2 29 68-97 3-31 (179)
218 1ly1_A Polynucleotide kinase; 97.5 4.4E-05 1.5E-09 59.6 3.4 28 67-94 3-31 (181)
219 3gd7_A Fusion complex of cysti 97.5 0.0003 1E-08 62.2 9.0 29 62-90 43-71 (390)
220 3thx_A DNA mismatch repair pro 97.5 0.00041 1.4E-08 67.9 10.7 25 63-87 659-683 (934)
221 3uie_A Adenylyl-sulfate kinase 97.5 8E-05 2.7E-09 59.5 4.9 38 64-101 23-63 (200)
222 3fb4_A Adenylate kinase; psych 97.5 6.7E-05 2.3E-09 60.6 4.5 30 68-97 2-31 (216)
223 1ukz_A Uridylate kinase; trans 97.5 6.1E-05 2.1E-09 60.2 4.2 33 66-98 15-47 (203)
224 3b5x_A Lipid A export ATP-bind 97.5 0.00028 9.6E-09 65.9 9.2 29 62-90 365-393 (582)
225 1qf9_A UMP/CMP kinase, protein 97.5 8.4E-05 2.9E-09 58.6 4.9 32 66-97 6-37 (194)
226 3b60_A Lipid A export ATP-bind 97.5 0.0004 1.4E-08 64.8 10.1 30 62-91 365-394 (582)
227 2fz4_A DNA repair protein RAD2 97.5 0.00027 9.2E-09 58.1 8.0 34 67-100 109-142 (237)
228 3kl4_A SRP54, signal recogniti 97.5 0.00078 2.7E-08 60.2 11.4 197 65-275 96-342 (433)
229 2pt5_A Shikimate kinase, SK; a 97.5 7.8E-05 2.7E-09 57.6 4.4 30 68-97 2-31 (168)
230 2v54_A DTMP kinase, thymidylat 97.5 9.1E-05 3.1E-09 59.1 4.9 34 65-98 3-37 (204)
231 1cke_A CK, MSSA, protein (cyti 97.5 8.9E-05 3E-09 60.3 4.7 31 66-96 5-35 (227)
232 1kgd_A CASK, peripheral plasma 97.5 7.4E-05 2.5E-09 58.7 4.0 28 64-91 3-30 (180)
233 3j16_B RLI1P; ribosome recycli 97.5 0.00047 1.6E-08 64.5 9.9 28 63-90 100-127 (608)
234 1zak_A Adenylate kinase; ATP:A 97.5 6.3E-05 2.1E-09 61.2 3.5 31 66-96 5-35 (222)
235 3ozx_A RNAse L inhibitor; ATP 97.5 0.00042 1.4E-08 63.9 9.4 106 63-182 291-447 (538)
236 1ak2_A Adenylate kinase isoenz 97.5 0.0001 3.4E-09 60.5 4.7 32 66-97 16-47 (233)
237 3sr0_A Adenylate kinase; phosp 97.5 8.7E-05 3E-09 59.7 4.2 29 68-96 2-30 (206)
238 1tf7_A KAIC; homohexamer, hexa 97.5 0.00049 1.7E-08 63.4 9.9 113 63-184 36-188 (525)
239 3nwj_A ATSK2; P loop, shikimat 97.5 5.9E-05 2E-09 62.6 3.3 33 66-98 48-80 (250)
240 1p9r_A General secretion pathw 97.5 0.00022 7.4E-09 63.7 7.1 94 27-134 142-245 (418)
241 2ga8_A Hypothetical 39.9 kDa p 97.5 5E-05 1.7E-09 65.9 2.9 52 36-96 3-54 (359)
242 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00041 1.4E-08 64.0 9.0 28 63-90 44-71 (538)
243 3ozx_A RNAse L inhibitor; ATP 97.4 0.00049 1.7E-08 63.5 9.4 27 64-90 23-49 (538)
244 1htw_A HI0065; nucleotide-bind 97.4 0.00011 3.7E-09 56.6 4.1 29 62-90 29-57 (158)
245 3tr0_A Guanylate kinase, GMP k 97.4 9.6E-05 3.3E-09 59.0 3.9 29 63-91 4-32 (205)
246 4a1f_A DNAB helicase, replicat 97.4 0.00041 1.4E-08 60.1 8.1 38 62-99 42-82 (338)
247 2pbr_A DTMP kinase, thymidylat 97.4 0.00013 4.6E-09 57.5 4.7 31 68-98 2-35 (195)
248 1ex7_A Guanylate kinase; subst 97.4 0.00013 4.5E-09 57.6 4.6 29 67-95 2-30 (186)
249 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.4E-09 59.1 3.9 29 63-91 9-37 (204)
250 3cmw_A Protein RECA, recombina 97.4 0.00025 8.7E-09 73.0 7.7 121 62-182 1427-1569(1706)
251 1e4v_A Adenylate kinase; trans 97.4 0.00013 4.4E-09 59.0 4.3 30 68-97 2-31 (214)
252 4e22_A Cytidylate kinase; P-lo 97.4 0.00016 5.5E-09 60.1 4.7 31 65-95 26-56 (252)
253 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.9E-09 58.7 3.7 28 63-90 3-30 (207)
254 3bgw_A DNAB-like replicative h 97.3 0.001 3.5E-08 59.9 10.2 38 62-99 193-233 (444)
255 2if2_A Dephospho-COA kinase; a 97.3 9E-05 3.1E-09 59.3 2.9 30 68-98 3-32 (204)
256 2z0h_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 57.0 4.6 31 68-98 2-35 (197)
257 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.9E-09 57.9 4.0 28 68-95 2-29 (205)
258 3j16_B RLI1P; ribosome recycli 97.3 0.0019 6.5E-08 60.4 12.1 24 67-90 379-402 (608)
259 3crm_A TRNA delta(2)-isopenten 97.3 0.00014 4.9E-09 62.4 4.1 33 67-99 6-38 (323)
260 2bbw_A Adenylate kinase 4, AK4 97.3 0.00016 5.4E-09 59.8 4.3 30 66-95 27-56 (246)
261 1lvg_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 58.7 3.3 27 65-91 3-29 (198)
262 2wwf_A Thymidilate kinase, put 97.3 7E-05 2.4E-09 60.2 2.1 29 65-93 9-37 (212)
263 3r20_A Cytidylate kinase; stru 97.3 0.00018 6.2E-09 58.9 4.4 31 66-96 9-39 (233)
264 1z6g_A Guanylate kinase; struc 97.3 0.00014 4.6E-09 59.1 3.7 28 63-90 20-47 (218)
265 2xb4_A Adenylate kinase; ATP-b 97.3 0.00016 5.3E-09 58.9 4.0 30 68-97 2-31 (223)
266 3tau_A Guanylate kinase, GMP k 97.3 0.00015 5E-09 58.4 3.8 29 64-92 6-34 (208)
267 1xx6_A Thymidine kinase; NESG, 97.3 0.00068 2.3E-08 53.8 7.6 33 65-97 7-42 (191)
268 2grj_A Dephospho-COA kinase; T 97.3 0.00013 4.4E-09 58.1 3.3 31 68-98 14-44 (192)
269 4f4c_A Multidrug resistance pr 97.3 0.00036 1.2E-08 71.2 7.3 29 62-90 1101-1129(1321)
270 1jjv_A Dephospho-COA kinase; P 97.3 0.00018 6E-09 57.7 3.9 28 68-96 4-31 (206)
271 1nks_A Adenylate kinase; therm 97.3 0.0001 3.5E-09 58.1 2.5 24 68-91 3-26 (194)
272 3c8u_A Fructokinase; YP_612366 97.3 0.00028 9.7E-09 56.7 5.2 28 64-91 20-47 (208)
273 1q57_A DNA primase/helicase; d 97.3 0.00043 1.5E-08 63.4 7.0 39 62-100 238-280 (503)
274 2plr_A DTMP kinase, probable t 97.3 0.00019 6.4E-09 57.6 3.9 28 66-93 4-31 (213)
275 2qt1_A Nicotinamide riboside k 97.3 0.00014 4.7E-09 58.4 3.1 33 63-95 18-51 (207)
276 1s96_A Guanylate kinase, GMP k 97.3 0.00018 6.2E-09 58.4 3.8 29 63-91 13-41 (219)
277 1wb9_A DNA mismatch repair pro 97.2 0.0015 5.1E-08 63.0 10.6 26 64-89 605-630 (800)
278 1nn5_A Similar to deoxythymidy 97.2 9.9E-05 3.4E-09 59.4 2.1 29 64-92 7-35 (215)
279 2yl4_A ATP-binding cassette SU 97.2 0.0012 4E-08 61.8 9.7 30 62-91 366-395 (595)
280 3bk7_A ABC transporter ATP-bin 97.2 0.00088 3E-08 62.7 8.7 28 63-90 114-141 (607)
281 3ake_A Cytidylate kinase; CMP 97.2 0.00026 8.9E-09 56.5 4.5 31 68-98 4-34 (208)
282 1w4r_A Thymidine kinase; type 97.2 0.0011 3.8E-08 52.4 8.0 35 65-99 19-56 (195)
283 1znw_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 57.4 3.8 30 62-91 16-45 (207)
284 1vht_A Dephospho-COA kinase; s 97.2 0.00028 9.7E-09 57.0 4.6 31 66-97 4-34 (218)
285 3a00_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 56.6 3.5 25 67-91 2-26 (186)
286 2v9p_A Replication protein E1; 97.2 0.00023 7.7E-09 60.8 4.1 30 61-90 121-150 (305)
287 1uf9_A TT1252 protein; P-loop, 97.2 0.0003 1E-08 55.9 4.6 31 66-97 8-38 (203)
288 3asz_A Uridine kinase; cytidin 97.2 0.00031 1.1E-08 56.4 4.7 35 64-98 4-38 (211)
289 3ney_A 55 kDa erythrocyte memb 97.2 0.00028 9.6E-09 56.2 4.1 29 63-91 16-44 (197)
290 1rz3_A Hypothetical protein rb 97.2 0.0011 3.7E-08 52.9 7.6 37 64-100 20-59 (201)
291 2xau_A PRE-mRNA-splicing facto 97.2 0.0016 5.6E-08 62.7 10.1 61 27-89 70-132 (773)
292 3bk7_A ABC transporter ATP-bin 97.2 0.0013 4.5E-08 61.5 9.1 27 64-90 380-406 (607)
293 1yqt_A RNAse L inhibitor; ATP- 97.2 0.0022 7.5E-08 59.2 10.5 27 64-90 310-336 (538)
294 2o8b_B DNA mismatch repair pro 97.2 0.0028 9.5E-08 62.8 11.7 22 66-87 789-810 (1022)
295 1uj2_A Uridine-cytidine kinase 97.2 0.00044 1.5E-08 57.3 5.3 39 66-104 22-68 (252)
296 1w36_D RECD, exodeoxyribonucle 97.2 0.00056 1.9E-08 64.2 6.6 25 66-90 164-188 (608)
297 2yvu_A Probable adenylyl-sulfa 97.2 0.00031 1.1E-08 55.3 4.1 36 64-99 11-49 (186)
298 2jeo_A Uridine-cytidine kinase 97.2 0.00027 9.2E-09 58.4 3.9 31 63-93 22-52 (245)
299 3b9q_A Chloroplast SRP recepto 97.1 0.00035 1.2E-08 59.6 4.6 28 63-90 97-124 (302)
300 3g5u_A MCG1178, multidrug resi 97.1 0.0016 5.4E-08 66.3 10.1 31 62-92 412-442 (1284)
301 2bdt_A BH3686; alpha-beta prot 97.1 0.00031 1E-08 55.4 3.9 32 67-99 3-34 (189)
302 3a8t_A Adenylate isopentenyltr 97.1 0.00025 8.4E-09 61.2 3.6 35 66-100 40-74 (339)
303 1q3t_A Cytidylate kinase; nucl 97.1 0.00042 1.4E-08 56.8 4.7 33 64-96 14-46 (236)
304 4b3f_X DNA-binding protein smu 97.1 0.0011 3.8E-08 62.6 8.2 48 36-98 190-240 (646)
305 1ewq_A DNA mismatch repair pro 97.1 0.0025 8.7E-08 61.1 10.7 24 66-89 576-599 (765)
306 1m7g_A Adenylylsulfate kinase; 97.1 0.00042 1.4E-08 55.8 4.5 39 64-102 23-65 (211)
307 3g5u_A MCG1178, multidrug resi 97.1 0.0016 5.5E-08 66.3 9.2 29 62-90 1055-1083(1284)
308 1t6n_A Probable ATP-dependent 97.1 0.017 5.8E-07 46.3 13.7 59 28-88 13-73 (220)
309 1qde_A EIF4A, translation init 97.0 0.0043 1.5E-07 50.0 10.0 54 27-82 12-67 (224)
310 3foz_A TRNA delta(2)-isopenten 97.0 0.0004 1.4E-08 59.1 3.9 34 66-99 10-43 (316)
311 2og2_A Putative signal recogni 97.0 0.00047 1.6E-08 60.2 4.4 29 62-90 153-181 (359)
312 2oap_1 GSPE-2, type II secreti 97.0 0.00016 5.4E-09 66.3 1.3 71 64-134 258-342 (511)
313 2px0_A Flagellar biosynthesis 97.0 0.0015 5.1E-08 55.5 7.3 36 65-100 104-143 (296)
314 2j9r_A Thymidine kinase; TK1, 97.0 0.0018 6.1E-08 52.1 7.3 34 65-98 27-63 (214)
315 3lnc_A Guanylate kinase, GMP k 97.0 0.00021 7.2E-09 58.4 1.9 29 63-91 24-53 (231)
316 3zvl_A Bifunctional polynucleo 97.0 0.00072 2.5E-08 60.4 5.5 31 65-95 257-287 (416)
317 2f6r_A COA synthase, bifunctio 97.0 0.00036 1.2E-08 58.9 3.4 31 66-97 75-105 (281)
318 3llm_A ATP-dependent RNA helic 97.0 0.0061 2.1E-07 49.7 10.5 22 66-87 76-97 (235)
319 2h92_A Cytidylate kinase; ross 97.0 0.00062 2.1E-08 55.0 4.4 31 67-97 4-34 (219)
320 3exa_A TRNA delta(2)-isopenten 97.0 0.00052 1.8E-08 58.5 3.9 33 67-99 4-36 (322)
321 2iw3_A Elongation factor 3A; a 97.0 0.0015 5.3E-08 63.9 7.7 26 63-88 458-483 (986)
322 3d3q_A TRNA delta(2)-isopenten 97.0 0.00043 1.5E-08 59.8 3.5 33 67-99 8-40 (340)
323 2gza_A Type IV secretion syste 97.0 0.00069 2.4E-08 59.3 4.8 73 63-135 172-262 (361)
324 2yhs_A FTSY, cell division pro 96.9 0.00048 1.7E-08 62.4 3.6 29 62-90 289-317 (503)
325 3iuy_A Probable ATP-dependent 96.9 0.0073 2.5E-07 48.8 10.5 57 25-83 15-74 (228)
326 2qmh_A HPR kinase/phosphorylas 96.9 0.00047 1.6E-08 54.7 3.1 30 66-96 34-63 (205)
327 1b0u_A Histidine permease; ABC 96.9 0.00049 1.7E-08 57.5 3.1 30 62-91 28-57 (262)
328 3ber_A Probable ATP-dependent 96.9 0.0027 9.3E-08 52.4 7.6 54 28-83 42-97 (249)
329 1ltq_A Polynucleotide kinase; 96.9 0.0006 2.1E-08 57.9 3.7 29 67-95 3-32 (301)
330 1mv5_A LMRA, multidrug resista 96.9 0.00035 1.2E-08 57.7 2.1 29 62-90 24-52 (243)
331 1sgw_A Putative ABC transporte 96.9 0.00042 1.5E-08 56.0 2.4 29 63-91 32-60 (214)
332 1g6h_A High-affinity branched- 96.8 0.00054 1.8E-08 57.1 3.0 28 63-90 30-57 (257)
333 3e70_C DPA, signal recognition 96.8 0.0034 1.2E-07 54.1 8.1 27 64-90 127-153 (328)
334 1c9k_A COBU, adenosylcobinamid 96.8 0.00084 2.9E-08 52.6 3.9 33 69-102 2-34 (180)
335 3aez_A Pantothenate kinase; tr 96.8 0.00078 2.7E-08 57.7 4.0 29 63-91 87-115 (312)
336 2zu0_C Probable ATP-dependent 96.8 0.00049 1.7E-08 57.6 2.7 28 62-89 42-69 (267)
337 1ls1_A Signal recognition part 96.8 0.015 5E-07 49.3 11.9 35 65-99 97-134 (295)
338 2ghi_A Transport protein; mult 96.8 0.00042 1.4E-08 57.8 2.2 29 62-90 42-70 (260)
339 2pze_A Cystic fibrosis transme 96.8 0.0005 1.7E-08 56.2 2.6 29 63-91 31-59 (229)
340 1ji0_A ABC transporter; ATP bi 96.8 0.00057 1.9E-08 56.3 2.9 28 63-90 29-56 (240)
341 2qm8_A GTPase/ATPase; G protei 96.8 0.0042 1.4E-07 53.8 8.5 28 63-90 52-79 (337)
342 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00044 1.5E-08 57.3 2.2 27 63-89 26-52 (250)
343 2yz2_A Putative ABC transporte 96.8 0.00073 2.5E-08 56.5 3.4 29 62-90 29-57 (266)
344 4eaq_A DTMP kinase, thymidylat 96.8 0.001 3.6E-08 54.3 4.2 28 64-91 24-51 (229)
345 3eph_A TRNA isopentenyltransfe 96.8 0.0008 2.7E-08 59.4 3.6 33 66-98 2-34 (409)
346 1j8m_F SRP54, signal recogniti 96.8 0.0043 1.5E-07 52.7 8.1 35 66-100 98-135 (297)
347 2gxq_A Heat resistant RNA depe 96.8 0.0079 2.7E-07 47.7 9.2 18 66-83 38-55 (207)
348 2j37_W Signal recognition part 96.7 0.0052 1.8E-07 56.1 8.9 35 65-99 100-137 (504)
349 2ihy_A ABC transporter, ATP-bi 96.7 0.00069 2.4E-08 57.1 2.9 29 63-91 44-72 (279)
350 3ux8_A Excinuclease ABC, A sub 96.7 0.0043 1.5E-07 58.8 8.7 21 63-83 41-61 (670)
351 1odf_A YGR205W, hypothetical 3 96.7 0.0013 4.5E-08 55.7 4.4 28 64-91 29-56 (290)
352 3ux8_A Excinuclease ABC, A sub 96.7 0.0033 1.1E-07 59.7 7.7 26 62-87 344-369 (670)
353 3b6e_A Interferon-induced heli 96.7 0.0056 1.9E-07 48.8 8.0 23 67-89 49-71 (216)
354 1q0u_A Bstdead; DEAD protein, 96.7 0.0072 2.5E-07 48.6 8.7 18 66-83 41-58 (219)
355 3fdi_A Uncharacterized protein 96.7 0.0014 4.9E-08 52.3 4.3 30 67-96 7-36 (201)
356 3gmt_A Adenylate kinase; ssgci 96.7 0.0013 4.6E-08 53.5 4.0 30 68-97 10-39 (230)
357 1x6v_B Bifunctional 3'-phospho 96.7 0.0017 6E-08 60.6 5.2 38 65-102 51-91 (630)
358 1vec_A ATP-dependent RNA helic 96.6 0.007 2.4E-07 48.0 8.0 19 66-84 40-58 (206)
359 3p32_A Probable GTPase RV1496/ 96.6 0.014 4.9E-07 50.8 10.5 34 65-98 78-114 (355)
360 2axn_A 6-phosphofructo-2-kinas 96.6 0.0051 1.8E-07 56.5 7.9 36 66-101 35-73 (520)
361 1gtv_A TMK, thymidylate kinase 96.6 0.00057 2E-08 54.8 1.4 25 68-92 2-26 (214)
362 3bor_A Human initiation factor 96.6 0.019 6.4E-07 46.8 10.5 55 27-83 28-84 (237)
363 3b85_A Phosphate starvation-in 96.6 0.00098 3.3E-08 53.6 2.7 25 65-89 21-45 (208)
364 2v3c_C SRP54, signal recogniti 96.6 0.007 2.4E-07 54.2 8.4 35 66-100 99-136 (432)
365 1rj9_A FTSY, signal recognitio 96.6 0.0015 5.1E-08 55.8 3.8 26 65-90 101-126 (304)
366 2bbs_A Cystic fibrosis transme 96.5 0.0008 2.7E-08 57.0 2.0 29 62-90 60-88 (290)
367 3tqf_A HPR(Ser) kinase; transf 96.5 0.0015 5E-08 50.6 3.3 24 66-89 16-39 (181)
368 1sq5_A Pantothenate kinase; P- 96.5 0.0016 5.6E-08 55.6 3.9 28 64-91 78-105 (308)
369 3fe2_A Probable ATP-dependent 96.5 0.0056 1.9E-07 50.1 7.1 57 25-83 25-83 (242)
370 1a7j_A Phosphoribulokinase; tr 96.5 0.0013 4.3E-08 55.8 3.1 37 66-102 5-44 (290)
371 2pl3_A Probable ATP-dependent 96.5 0.024 8.3E-07 45.9 10.9 54 28-83 24-79 (236)
372 1np6_A Molybdopterin-guanine d 96.5 0.0019 6.3E-08 50.4 3.7 25 66-90 6-30 (174)
373 2pjz_A Hypothetical protein ST 96.5 0.00093 3.2E-08 55.8 2.0 28 62-90 27-54 (263)
374 3kta_A Chromosome segregation 96.5 0.0018 6.1E-08 50.5 3.6 24 68-91 28-51 (182)
375 3tqc_A Pantothenate kinase; bi 96.5 0.0046 1.6E-07 53.1 6.4 26 66-91 92-117 (321)
376 2oxc_A Probable ATP-dependent 96.5 0.018 6E-07 46.7 9.7 55 27-83 22-78 (230)
377 1zu4_A FTSY; GTPase, signal re 96.5 0.0029 1E-07 54.4 5.1 38 63-100 102-142 (320)
378 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0021 7.2E-08 51.6 3.9 32 66-97 28-62 (219)
379 3cr8_A Sulfate adenylyltranfer 96.4 0.0021 7.2E-08 59.4 4.1 39 64-102 367-409 (552)
380 1lw7_A Transcriptional regulat 96.4 0.002 6.7E-08 56.5 3.8 31 63-93 165-197 (365)
381 3lxx_A GTPase IMAP family memb 96.4 0.011 3.8E-07 48.2 8.1 25 66-90 29-53 (239)
382 3sop_A Neuronal-specific septi 96.4 0.0017 5.8E-08 54.4 3.2 23 68-90 4-26 (270)
383 2orv_A Thymidine kinase; TP4A 96.4 0.026 9.1E-07 45.7 9.9 33 66-98 19-54 (234)
384 2xxa_A Signal recognition part 96.4 0.011 3.8E-07 52.9 8.5 37 65-101 99-139 (433)
385 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5.2E-08 59.0 2.9 29 62-90 134-162 (460)
386 1g8f_A Sulfate adenylyltransfe 96.3 0.0034 1.2E-07 57.3 4.8 28 65-92 394-421 (511)
387 3hdt_A Putative kinase; struct 96.3 0.0029 1E-07 51.4 3.9 31 66-96 14-44 (223)
388 4i1u_A Dephospho-COA kinase; s 96.3 0.0023 8E-08 51.3 3.3 31 67-98 10-40 (210)
389 1xjc_A MOBB protein homolog; s 96.3 0.0028 9.5E-08 49.1 3.4 24 67-90 5-28 (169)
390 2p67_A LAO/AO transport system 96.3 0.031 1.1E-06 48.3 10.6 28 63-90 53-80 (341)
391 1hv8_A Putative ATP-dependent 96.3 0.035 1.2E-06 47.8 10.9 22 67-88 45-66 (367)
392 3lxw_A GTPase IMAP family memb 96.2 0.011 3.7E-07 48.7 7.1 24 66-89 21-44 (247)
393 2f1r_A Molybdopterin-guanine d 96.2 0.0017 5.9E-08 50.5 2.1 25 68-92 4-28 (171)
394 2obl_A ESCN; ATPase, hydrolase 96.2 0.0036 1.2E-07 54.4 4.4 33 63-95 68-100 (347)
395 3tmk_A Thymidylate kinase; pho 96.2 0.0058 2E-07 49.3 5.3 31 65-95 4-34 (216)
396 2dpy_A FLII, flagellum-specifi 96.2 0.0048 1.7E-07 55.3 5.1 32 63-94 154-185 (438)
397 2z0m_A 337AA long hypothetical 96.2 0.029 9.9E-07 47.7 10.0 33 66-98 31-63 (337)
398 2qag_B Septin-6, protein NEDD5 96.2 0.0024 8.3E-08 56.8 3.1 27 63-89 37-65 (427)
399 1m8p_A Sulfate adenylyltransfe 96.2 0.0041 1.4E-07 57.8 4.7 36 66-101 396-435 (573)
400 3o8b_A HCV NS3 protease/helica 96.2 0.064 2.2E-06 50.5 12.7 35 65-99 231-265 (666)
401 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0065 2.2E-07 54.6 5.7 26 65-90 150-175 (473)
402 3fmo_B ATP-dependent RNA helic 96.1 0.091 3.1E-06 44.4 12.6 57 27-83 90-148 (300)
403 1tq4_A IIGP1, interferon-induc 96.1 0.0031 1.1E-07 56.1 3.5 24 66-89 69-92 (413)
404 2wsm_A Hydrogenase expression/ 96.1 0.0045 1.5E-07 49.7 4.2 26 66-91 30-55 (221)
405 2va8_A SSO2462, SKI2-type heli 96.1 0.043 1.5E-06 52.3 11.5 23 64-86 44-66 (715)
406 3vkw_A Replicase large subunit 96.1 0.0049 1.7E-07 55.1 4.6 26 64-89 159-184 (446)
407 2vp4_A Deoxynucleoside kinase; 96.1 0.004 1.4E-07 50.7 3.7 32 64-96 18-49 (230)
408 3lv8_A DTMP kinase, thymidylat 96.1 0.0038 1.3E-07 51.2 3.6 26 65-90 26-51 (236)
409 2ocp_A DGK, deoxyguanosine kin 96.1 0.0038 1.3E-07 51.2 3.6 26 66-91 2-27 (241)
410 1xti_A Probable ATP-dependent 96.1 0.13 4.5E-06 44.7 13.7 57 29-87 8-66 (391)
411 1bif_A 6-phosphofructo-2-kinas 96.1 0.014 4.8E-07 52.8 7.6 26 66-91 39-64 (469)
412 1p5z_B DCK, deoxycytidine kina 96.0 0.002 6.9E-08 53.6 1.7 27 65-91 23-49 (263)
413 4edh_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 49.9 3.7 26 66-91 6-31 (213)
414 2ged_A SR-beta, signal recogni 96.0 0.0095 3.2E-07 46.5 5.6 26 65-90 47-72 (193)
415 3v9p_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 50.9 3.2 27 64-90 23-49 (227)
416 3eiq_A Eukaryotic initiation f 96.0 0.056 1.9E-06 47.5 11.1 55 28-84 39-95 (414)
417 3k53_A Ferrous iron transport 96.0 0.015 5.2E-07 48.5 7.0 23 67-89 4-26 (271)
418 1oix_A RAS-related protein RAB 96.0 0.0038 1.3E-07 49.1 3.0 24 67-90 30-53 (191)
419 2f9l_A RAB11B, member RAS onco 96.0 0.0044 1.5E-07 49.0 3.4 24 67-90 6-29 (199)
420 2gk6_A Regulator of nonsense t 95.9 0.0074 2.5E-07 56.7 5.3 24 67-90 196-219 (624)
421 1pui_A ENGB, probable GTP-bind 95.9 0.0021 7.3E-08 51.1 1.3 29 61-89 21-49 (210)
422 2j0s_A ATP-dependent RNA helic 95.9 0.09 3.1E-06 46.2 12.0 57 27-85 35-93 (410)
423 3pey_A ATP-dependent RNA helic 95.9 0.089 3E-06 45.7 11.8 20 66-85 44-63 (395)
424 3sqw_A ATP-dependent RNA helic 95.9 0.14 4.7E-06 47.5 13.6 18 65-82 59-76 (579)
425 3ly5_A ATP-dependent RNA helic 95.8 0.049 1.7E-06 45.1 9.5 18 66-83 91-108 (262)
426 2qtf_A Protein HFLX, GTP-bindi 95.8 0.024 8.2E-07 49.5 7.8 23 68-90 181-203 (364)
427 3fmp_B ATP-dependent RNA helic 95.8 0.15 5.1E-06 46.0 13.4 56 28-83 91-148 (479)
428 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0061 2.1E-07 46.1 3.4 25 66-90 23-47 (149)
429 2db3_A ATP-dependent RNA helic 95.8 0.093 3.2E-06 46.8 11.7 54 27-82 54-109 (434)
430 1nij_A Hypothetical protein YJ 95.8 0.013 4.5E-07 50.2 5.7 24 67-90 5-28 (318)
431 1s2m_A Putative ATP-dependent 95.8 0.073 2.5E-06 46.5 10.8 57 27-85 19-77 (400)
432 2v6i_A RNA helicase; membrane, 95.8 0.042 1.4E-06 49.1 9.2 18 66-83 2-19 (431)
433 2f7s_A C25KG, RAS-related prot 95.7 0.07 2.4E-06 42.4 9.7 23 67-89 26-48 (217)
434 2dyk_A GTP-binding protein; GT 95.7 0.0064 2.2E-07 45.8 3.3 22 68-89 3-24 (161)
435 2ffh_A Protein (FFH); SRP54, s 95.7 0.019 6.7E-07 51.1 6.9 35 65-99 97-134 (425)
436 4ag6_A VIRB4 ATPase, type IV s 95.7 0.012 4E-07 52.0 5.3 34 65-98 34-70 (392)
437 3ld9_A DTMP kinase, thymidylat 95.7 0.0079 2.7E-07 48.8 3.9 29 64-92 19-47 (223)
438 2gj8_A MNME, tRNA modification 95.7 0.0059 2E-07 47.1 3.0 24 66-89 4-27 (172)
439 2hf9_A Probable hydrogenase ni 95.7 0.014 4.7E-07 47.0 5.3 25 66-90 38-62 (226)
440 1nrj_B SR-beta, signal recogni 95.6 0.0083 2.8E-07 48.0 3.9 25 66-90 12-36 (218)
441 3dkp_A Probable ATP-dependent 95.6 0.047 1.6E-06 44.5 8.5 18 66-83 66-83 (245)
442 1z2a_A RAS-related protein RAB 95.6 0.0068 2.3E-07 46.0 3.1 24 66-89 5-28 (168)
443 3iby_A Ferrous iron transport 95.6 0.078 2.7E-06 43.8 9.8 22 68-89 3-24 (256)
444 3euj_A Chromosome partition pr 95.6 0.0071 2.4E-07 54.8 3.6 28 63-91 27-54 (483)
445 2rcn_A Probable GTPase ENGC; Y 95.6 0.0072 2.4E-07 52.6 3.5 27 65-91 214-240 (358)
446 3iev_A GTP-binding protein ERA 95.6 0.062 2.1E-06 45.7 9.3 24 66-89 10-33 (308)
447 2wji_A Ferrous iron transport 95.6 0.0068 2.3E-07 46.3 3.0 23 67-89 4-26 (165)
448 3pih_A Uvrabc system protein A 95.6 0.037 1.3E-06 54.1 8.7 42 126-181 827-868 (916)
449 2qu8_A Putative nucleolar GTP- 95.6 0.061 2.1E-06 43.3 8.9 24 66-89 29-52 (228)
450 3i8s_A Ferrous iron transport 95.6 0.18 6.3E-06 41.9 12.0 23 67-89 4-26 (274)
451 1upt_A ARL1, ADP-ribosylation 95.6 0.01 3.4E-07 45.2 3.8 26 64-89 5-30 (171)
452 2www_A Methylmalonic aciduria 95.5 0.014 4.8E-07 50.7 5.1 25 66-90 74-98 (349)
453 2zej_A Dardarin, leucine-rich 95.5 0.0058 2E-07 47.6 2.5 21 68-88 4-24 (184)
454 1kao_A RAP2A; GTP-binding prot 95.5 0.0086 2.9E-07 45.2 3.3 23 67-89 4-26 (167)
455 2wjy_A Regulator of nonsense t 95.5 0.013 4.5E-07 56.6 5.3 24 67-90 372-395 (800)
456 4tmk_A Protein (thymidylate ki 95.5 0.009 3.1E-07 48.1 3.5 25 66-90 3-27 (213)
457 2lkc_A Translation initiation 95.5 0.0099 3.4E-07 45.6 3.6 25 65-89 7-31 (178)
458 1fuu_A Yeast initiation factor 95.5 0.089 3.1E-06 45.8 10.2 56 26-83 18-75 (394)
459 3dz8_A RAS-related protein RAB 95.5 0.12 4.2E-06 40.0 10.1 24 67-90 24-47 (191)
460 2ce2_X GTPase HRAS; signaling 95.5 0.0086 2.9E-07 45.1 3.2 23 68-90 5-27 (166)
461 1u8z_A RAS-related protein RAL 95.4 0.0095 3.3E-07 45.0 3.3 23 67-89 5-27 (168)
462 1ek0_A Protein (GTP-binding pr 95.4 0.0096 3.3E-07 45.1 3.3 24 67-90 4-27 (170)
463 1wrb_A DJVLGB; RNA helicase, D 95.4 0.085 2.9E-06 43.2 9.4 18 66-83 60-77 (253)
464 1z0j_A RAB-22, RAS-related pro 95.4 0.0097 3.3E-07 45.2 3.3 24 67-90 7-30 (170)
465 3l9o_A ATP-dependent RNA helic 95.4 0.067 2.3E-06 53.6 10.1 23 66-88 199-221 (1108)
466 2yv5_A YJEQ protein; hydrolase 95.4 0.0095 3.2E-07 50.7 3.5 26 65-91 164-189 (302)
467 1ko7_A HPR kinase/phosphatase; 95.4 0.012 4.2E-07 50.1 4.1 24 66-89 144-167 (314)
468 3i5x_A ATP-dependent RNA helic 95.4 0.21 7.1E-06 46.0 12.8 18 65-82 110-127 (563)
469 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.01 3.4E-07 45.5 3.3 23 67-89 8-30 (177)
470 2wjg_A FEOB, ferrous iron tran 95.4 0.0089 3E-07 46.4 3.0 23 67-89 8-30 (188)
471 1z08_A RAS-related protein RAB 95.4 0.01 3.5E-07 45.1 3.3 24 66-89 6-29 (170)
472 1ky3_A GTP-binding protein YPT 95.4 0.01 3.5E-07 45.6 3.3 25 66-90 8-32 (182)
473 1g16_A RAS-related protein SEC 95.3 0.01 3.4E-07 45.1 3.2 23 67-89 4-26 (170)
474 2nzj_A GTP-binding protein REM 95.3 0.01 3.4E-07 45.4 3.2 23 67-89 5-27 (175)
475 1c1y_A RAS-related protein RAP 95.3 0.011 3.7E-07 44.7 3.3 23 67-89 4-26 (167)
476 1svi_A GTP-binding protein YSX 95.3 0.013 4.3E-07 45.8 3.7 25 65-89 22-46 (195)
477 2xzl_A ATP-dependent helicase 95.3 0.017 5.9E-07 55.8 5.3 22 67-88 376-397 (802)
478 2erx_A GTP-binding protein DI- 95.3 0.01 3.4E-07 45.1 3.0 23 67-89 4-26 (172)
479 3tbk_A RIG-I helicase domain; 95.3 0.14 4.9E-06 46.6 11.3 23 66-88 19-41 (555)
480 3ice_A Transcription terminati 95.3 0.021 7.3E-07 50.0 5.2 28 63-90 171-198 (422)
481 1r8s_A ADP-ribosylation factor 95.2 0.012 4.1E-07 44.4 3.3 22 68-89 2-23 (164)
482 1r2q_A RAS-related protein RAB 95.2 0.012 4.1E-07 44.6 3.3 23 67-89 7-29 (170)
483 1knx_A Probable HPR(Ser) kinas 95.2 0.0096 3.3E-07 50.7 2.9 23 66-88 147-169 (312)
484 2zj8_A DNA helicase, putative 95.2 0.11 3.8E-06 49.6 10.6 19 65-83 38-56 (720)
485 3bc1_A RAS-related protein RAB 95.2 0.012 4.2E-07 45.6 3.3 23 67-89 12-34 (195)
486 1u0l_A Probable GTPase ENGC; p 95.2 0.0099 3.4E-07 50.5 2.9 28 65-92 168-195 (301)
487 2hxs_A RAB-26, RAS-related pro 95.2 0.012 4.3E-07 45.0 3.3 24 66-89 6-29 (178)
488 3q85_A GTP-binding protein REM 95.2 0.012 4.2E-07 44.6 3.2 21 68-88 4-24 (169)
489 1z0f_A RAB14, member RAS oncog 95.2 0.013 4.5E-07 44.8 3.3 25 66-90 15-39 (179)
490 2atv_A RERG, RAS-like estrogen 95.1 0.015 5E-07 45.7 3.6 25 65-89 27-51 (196)
491 2xtp_A GTPase IMAP family memb 95.1 0.15 5.2E-06 41.8 10.1 24 66-89 22-45 (260)
492 2fn4_A P23, RAS-related protei 95.1 0.012 4.2E-07 45.1 3.1 24 66-89 9-32 (181)
493 3def_A T7I23.11 protein; chlor 95.1 0.063 2.1E-06 44.4 7.6 25 66-90 36-60 (262)
494 1t9h_A YLOQ, probable GTPase E 95.1 0.0039 1.3E-07 53.1 0.2 27 64-90 171-197 (307)
495 2oil_A CATX-8, RAS-related pro 95.1 0.014 4.7E-07 45.6 3.4 23 67-89 26-48 (193)
496 3qks_A DNA double-strand break 95.1 0.014 4.8E-07 46.5 3.4 27 66-92 23-49 (203)
497 3clv_A RAB5 protein, putative; 95.1 0.016 5.3E-07 45.4 3.7 24 66-89 7-30 (208)
498 2y8e_A RAB-protein 6, GH09086P 95.1 0.013 4.5E-07 44.8 3.2 23 67-89 15-37 (179)
499 3con_A GTPase NRAS; structural 95.1 0.014 4.8E-07 45.4 3.3 24 67-90 22-45 (190)
500 3a1s_A Iron(II) transport prot 95.1 0.04 1.4E-06 45.6 6.3 23 67-89 6-28 (258)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-51 Score=358.25 Aligned_cols=286 Identities=50% Similarity=0.836 Sum_probs=264.2
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
.+.++.-+|.+++|.+..+.-.+.|+++|++|.|+++++++|++.+..|+..++.|.++|+.+++++||+||||||||++
T Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 119 SYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp TCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred cceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
|+++|++++.+++.+++.++.+.+.|+++..++.+|..++...||||||||+|.+++++.+..++.+......+..++..
T Consensus 199 AkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278 (405)
T ss_dssp HHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988777777778888999999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
++++....+++||+|||.++.+++++++++||+..|+++.|+.++|.+||+.++.......+++++.++..+.|||++||
T Consensus 279 lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADV 358 (405)
T ss_dssp HHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHH
T ss_pred hhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHH
Confidence 99988888999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhchhhhhhhhc
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADF 289 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (292)
..+|++|...|.++++..|+.+||.+|+..+..... +....+.+.|
T Consensus 359 ~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~-~~~~s~~k~~ 404 (405)
T 4b4t_J 359 KGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ-ETAISVAKLF 404 (405)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHT-CC--------
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccc-cccchhHhhh
Confidence 999999999999999999999999999999987544 3344444443
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-50 Score=357.07 Aligned_cols=285 Identities=71% Similarity=1.155 Sum_probs=263.2
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
.+.+...+|++++|.+.++.-...|.++|++|.|+++++++|.+.+..|+..+..|.++|+.+++++|||||||||||++
T Consensus 152 ~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 152 TLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred chhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
|+++|++++.+++.+++.++.+.+.|.+...++.+|..++...||||||||+|.++.++.+.....+......+..+|..
T Consensus 232 AkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 232 AKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp HHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777766777888899999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
+++.....+++||+|||.++.+++++++++||+..|+|+.|+.++|.+||+.++.......++|++.++..+.|||++||
T Consensus 312 lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi 391 (437)
T 4b4t_L 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADI 391 (437)
T ss_dssp HHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHH
T ss_pred hhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHH
Confidence 99988888999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhchhhhhhh
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNA 287 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (292)
..+|++|...|.++++..|+.+||.+|++.+.+....+...+|++
T Consensus 392 ~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 392 RNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCcccchhhhc
Confidence 999999999999999999999999999999998777777777765
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-49 Score=348.95 Aligned_cols=279 Identities=48% Similarity=0.839 Sum_probs=262.8
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
.+.+..-+|.+.+|.+..+.-...|+++|++|.|+++++++|.+.+..|+..++.|.++|+.+++++|||||||||||++
T Consensus 153 ~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 153 TMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp TCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH
T ss_pred CccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
|+++|++++.+++.++..++.+.+.|+++..++.+|..++...|+||||||+|.++.++.......+......+..+|+.
T Consensus 233 AkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 233 AKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp HHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777776677788889999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
+++.....+++||+|||.++.+++++++++||+..|+|+.|+.++|.+||+.++.......+++++.|+..+.|||++||
T Consensus 313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADI 392 (437)
T ss_dssp HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHH
T ss_pred hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHH
Confidence 98888888999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhhch
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLES 281 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~~ 281 (292)
..+|++|...|+++++..|+.+||.+|++.+.....++.
T Consensus 393 ~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 393 QAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhh
Confidence 999999999999999999999999999999987665544
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-48 Score=348.24 Aligned_cols=275 Identities=52% Similarity=0.931 Sum_probs=263.0
Q ss_pred chhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 022768 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~ 81 (292)
+++.+..-+|.+++|.+..|.-+..|.++|++|.|+++++++|.+.+..|+..++.|.++|+.+++++||+||||||||+
T Consensus 179 ~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTl 258 (467)
T 4b4t_H 179 SKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTL 258 (467)
T ss_dssp TSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHH
T ss_pred CcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHH
Confidence 46788899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHH
Q 022768 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (292)
Q Consensus 82 l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~ 161 (292)
+|+++|++++.+++.+++..+.+.+.|.++..++.+|..++...|+||||||+|.++.++.+...+........+..+|.
T Consensus 259 LAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 259 CARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp HHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777777888889999999
Q ss_pred HhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHH
Q 022768 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGAD 241 (292)
Q Consensus 162 ~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~d 241 (292)
.+++.....+++||+|||.++.+++++++++||+..|+|+.|+.++|.+||+.++.......+++++.|+..+.|||++|
T Consensus 339 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGAD 418 (467)
T 4b4t_H 339 QLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAE 418 (467)
T ss_dssp HHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHH
T ss_pred HhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHH
Confidence 99988888899999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 242 LRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 242 i~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
|..+|++|...|.++++..|+.+||.+|+..+...
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998764
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-49 Score=350.91 Aligned_cols=277 Identities=49% Similarity=0.837 Sum_probs=261.6
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
.+.+...+|.+.+|.+..+.-...|+++|++|.|+++++++|.+.+..|+..++.|.++|+.+++++|||||||||||++
T Consensus 152 ~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 152 SYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred chhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
|+++|++++.+++.+++..+.+.+.|.++..++.+|..++...||||||||+|.++.++.+...+........+..+++.
T Consensus 232 AkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp HHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777666777888899999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADL 242 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di 242 (292)
++++....+++||+|||.++.+++++++++||+..|+++.|+.++|.+||+.++.......+++++.|+..+.|||++||
T Consensus 312 ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi 391 (434)
T 4b4t_M 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQL 391 (434)
T ss_dssp HTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHH
T ss_pred hhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHH
Confidence 99988888999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhhh
Q 022768 243 RNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKL 279 (292)
Q Consensus 243 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 279 (292)
..+|++|...|.+++...|+.+||.+|+..+.+..++
T Consensus 392 ~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 392 KAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999998876553
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-47 Score=339.96 Aligned_cols=273 Identities=44% Similarity=0.781 Sum_probs=257.1
Q ss_pred hhhhhhhCCCCCChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
.+.+...+|.+.++.+..+.-...|.++|+++.|+++++++|.+.+..|+..++.|.++|+.+++++||+||||||||++
T Consensus 143 ~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 143 SNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHH
T ss_pred hhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHH
Confidence 45566778999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 83 ~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
|+++|++++.+++.+++.++.+.+.|.+...++.+|..++...|+|+||||+|.++.++.......+......+..++..
T Consensus 223 akAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ 302 (428)
T 4b4t_K 223 VKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302 (428)
T ss_dssp HHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777777777788889999999
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEcc-CCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGAD 241 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~-~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~d 241 (292)
++++....+++||+|||.++.+++++++++||+..|+|| +|+.++|..||+.++.......+++++.++..+.|||++|
T Consensus 303 ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgad 382 (428)
T 4b4t_K 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAV 382 (428)
T ss_dssp HHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHH
T ss_pred hhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHH
Confidence 998888889999999999999999999999999999996 8999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 242 LRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 242 i~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
|..+|++|...|.++++..|+.+|+.+|+.....
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 9999999999999999999999999999987543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-41 Score=323.63 Aligned_cols=267 Identities=38% Similarity=0.680 Sum_probs=195.3
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
....|+++|+++.|++++++.|++.+.+|+.....|.++|..+++++||+||||||||++|+++|++++.+++.++..++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.+.+.|++++.++.+|..++...||||||||+|.++++++....+........+.++|.+++++....+++||+|||.++
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999988765544444555677888899999888888999999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC----
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER---- 258 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~---- 258 (292)
.+++++++++||+..++++.|+.++|.+||+.++.......+++++.|+..+.|||++||..+|++|...|+++..
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~ 707 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999888888889999999999999999999999999999987631
Q ss_pred ---------------------CcccHHHHHHHHHHHhhhhhhchhh---hhhhhc
Q 022768 259 ---------------------DYVIHEDFMKAVRKLNEAKKLESSA---HYNADF 289 (292)
Q Consensus 259 ---------------------~~i~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 289 (292)
..|+.+||.+|++.+.+.-+.+... .|.+.|
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f 762 (806)
T 3cf2_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 762 (806)
T ss_dssp --------------------CCC----CCTTTC---------------CCCC---
T ss_pred hhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 2589999999999999875555544 444444
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.2e-39 Score=306.81 Aligned_cols=265 Identities=40% Similarity=0.688 Sum_probs=235.1
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
....|.++|++|.|+++++++|++.+..|+..++.|..+|+.+++++||+||||||||++|+++|++++.+++.+++.++
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.+.+.+..+..++.+|..++...|+||||||+|.+++++.+......... +.+++..++++....+++||++||.++
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~ri---v~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHH---HHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHH---HHHHHHHHhcccccCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988766555444444 444455555555567899999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC----
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER---- 258 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~---- 258 (292)
.+++++++++||+..|+++.|+.++|.+||+.++.......++++..++..+.||+++||..+|++|...|..+..
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999988888899999999999999999999999999999987632
Q ss_pred -------------CcccHHHHHHHHHHHhhhhhhch-----hhhhhhhcC
Q 022768 259 -------------DYVIHEDFMKAVRKLNEAKKLES-----SAHYNADFG 290 (292)
Q Consensus 259 -------------~~i~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 290 (292)
..|+.+|+..|+..+.+...++. ...|+++.|
T Consensus 432 ~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~digg 481 (806)
T 3cf2_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481 (806)
T ss_dssp GTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCS
T ss_pred ccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCC
Confidence 25788999999999988655433 456777766
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-37 Score=265.82 Aligned_cols=255 Identities=56% Similarity=0.978 Sum_probs=237.3
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...|+++|++++|++++++.|.+++..++.....+.++|+.++.+++|+||||||||++++++++.++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
..+.+.....+..+|..+....|++|+|||+|.+..++.+.....+...+..+..+++.++......++++|+|+|.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999887777666778888999999998887777778999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIH 263 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~ 263 (292)
+++.+++++||...+.++.|+.++|.+|++.++.......+.++..++..+.|++++++..+++.|...|..++...|+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~ 248 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTM 248 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCH
Confidence 99999998899999999999999999999999988777778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 022768 264 EDFMKAVRKLNEAKK 278 (292)
Q Consensus 264 ~~~~~a~~~~~~~~~ 278 (292)
+|+.+|+..+.....
T Consensus 249 ~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 249 DDFRKAVEKIMEKKK 263 (285)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987544
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.1e-37 Score=268.42 Aligned_cols=266 Identities=38% Similarity=0.686 Sum_probs=223.4
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...|+++|++++|++++++.|.+.+..++.....+..+++.++.+++|+||||||||++|+++++.++.+++.+++..+.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
..+.+.....+..+|..+....|++|||||+|.+...++.............+..++..+++.....+++||++||.++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 87778877888899999998899999999999997654332211111112233445555555555668999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-----
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER----- 258 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~----- 258 (292)
+++++++++||...++++.|+.++|.+|++.++.......+++++.++..+.||+++||..+|++|...|..+..
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999989999999999999999999999999877766788999999999999999999999999998876521
Q ss_pred --------------------CcccHHHHHHHHHHHhhhhhhch---hhhhhhhc
Q 022768 259 --------------------DYVIHEDFMKAVRKLNEAKKLES---SAHYNADF 289 (292)
Q Consensus 259 --------------------~~i~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ 289 (292)
..|+.+||.+|++.+.+..+... ...|.+.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999987655544 34455544
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.3e-37 Score=269.62 Aligned_cols=267 Identities=34% Similarity=0.626 Sum_probs=220.6
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
..-...|+++|++++|++++++.|.+.+..++.....+.. +..++.++||+||||||||++|+++|++++.+++.+++.
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3445788999999999999999999999888777666655 446678999999999999999999999999999999999
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
.+...+.+.....++.+|..+....|+||||||+|.+..++...........+..++..+.... ....+++||++||.
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~vi~atn~ 163 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--NDSQGVLVLGATNI 163 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--TSCCCEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--ccCCceEEEEecCC
Confidence 9999999999999999999999999999999999999877655444444555555555544432 24457999999999
Q ss_pred CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-
Q 022768 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER- 258 (292)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~- 258 (292)
++.+++++++ ||...++++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|+.|...|+++..
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999998865433 455788999999999999999999999999988631
Q ss_pred ------------------------------------------CcccHHHHHHHHHHHhhhhhhch---hhhhhhhcCCC
Q 022768 259 ------------------------------------------DYVIHEDFMKAVRKLNEAKKLES---SAHYNADFGKE 292 (292)
Q Consensus 259 ------------------------------------------~~i~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~ 292 (292)
..|+.+|+.+|++.+.+..+.+. ...|.+.||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 34999999999999998655444 56788889875
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=263.86 Aligned_cols=262 Identities=33% Similarity=0.622 Sum_probs=222.2
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCcEEEEeccchh
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAII 103 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-~~~~~~~~~~~~~ 103 (292)
..|+++|++|+|++++++.|.+.+..|+.....+.. +..+++++||+||||||||++|+++|+++ +.+++.+++.++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 568899999999999999999999988877777653 24567899999999999999999999999 8899999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-CCCCeEEEEEeCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPD 182 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~vi~t~~~~~ 182 (292)
..+.+.....++.+|..+....|+||||||+|.+.+++...... .....+..++..+++.. ...+++||++||.++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTT---HHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccch---HHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 88889999999999999999999999999999998776554332 23344556666666543 356899999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC---
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER--- 258 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~--- 258 (292)
.+++++++ ||...+.++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|...|.++..
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999999999998765443 456788999999999999999999999999887521
Q ss_pred ----------------------------------------------CcccHHHHHHHHHHHhhhhhh---chhhhhhhhc
Q 022768 259 ----------------------------------------------DYVIHEDFMKAVRKLNEAKKL---ESSAHYNADF 289 (292)
Q Consensus 259 ----------------------------------------------~~i~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 289 (292)
..|+.+|+.+|++.+.+.-+. +....|.+.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 318 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDF 318 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTT
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 259999999999999986554 3467888888
Q ss_pred CCC
Q 022768 290 GKE 292 (292)
Q Consensus 290 ~~~ 292 (292)
|.+
T Consensus 319 ~~~ 321 (322)
T 1xwi_A 319 GQE 321 (322)
T ss_dssp CSC
T ss_pred ccC
Confidence 875
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.8e-36 Score=266.83 Aligned_cols=273 Identities=34% Similarity=0.613 Sum_probs=210.4
Q ss_pred ChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE
Q 022768 15 DPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (292)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~ 94 (292)
...+...+....|+++|++|+|++++++.|.+.+..++.....+.. +..++.++||+||||||||++|+++|+.++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 34 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp -------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3344445556788999999999999999999999888777777665 456678899999999999999999999999999
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
+.+++..+...+.+.....++.+|..+....|+||||||+|.+...+..............++..++.+. ....+++|
T Consensus 113 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~v 190 (355)
T 2qp9_X 113 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--NDSQGVLV 190 (355)
T ss_dssp EEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----CCEEE
T ss_pred EEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--ccCCCeEE
Confidence 9999999988888888999999999999889999999999999776544333333444444444444322 23457999
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
|++||.++.+++++++ ||...+.++.|+.++|.+|++.++...... .+.+++.|+..+.||+++||..+|++|...|
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999999999998765432 4567889999999999999999999999999
Q ss_pred HHhc-------------------------------------------CCcccHHHHHHHHHHHhhhhhhc---hhhhhhh
Q 022768 254 IRAE-------------------------------------------RDYVIHEDFMKAVRKLNEAKKLE---SSAHYNA 287 (292)
Q Consensus 254 ~~~~-------------------------------------------~~~i~~~~~~~a~~~~~~~~~~~---~~~~~~~ 287 (292)
+.+. ...|+.+||.+|++.+.+..+.+ ....|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~ 348 (355)
T 2qp9_X 269 IRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTR 348 (355)
T ss_dssp HHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8762 12499999999999999875554 3678888
Q ss_pred hcCCC
Q 022768 288 DFGKE 292 (292)
Q Consensus 288 ~~~~~ 292 (292)
.||.+
T Consensus 349 ~~~~~ 353 (355)
T 2qp9_X 349 DFGQE 353 (355)
T ss_dssp HTC--
T ss_pred HhccC
Confidence 88864
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.9e-35 Score=248.56 Aligned_cols=251 Identities=41% Similarity=0.681 Sum_probs=216.4
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
.+..++.+|++++|++++++.+.+.+.. +.....+..++...+.+++|+||||||||++++++++.++.+++.+++..+
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 4567889999999999999999988765 555666777777788899999999999999999999999999999999998
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
...+.+.....+..+|..+....|++++|||+|.+...+..............+..++..++......++++|+++|.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 88888888888899999998888999999999999876655444344445566677777777766667899999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVI 262 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~ 262 (292)
.+++++.+++||...+.++.|+.++|.+|++.++.......+.+...++..+.||+++|+..+++.|...|..++...|+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~ 241 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 241 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999889999999999999999999999998777777888999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHh
Q 022768 263 HEDFMKAVRKLN 274 (292)
Q Consensus 263 ~~~~~~a~~~~~ 274 (292)
.+|+.+|+..+.
T Consensus 242 ~~~~~~a~~~~~ 253 (257)
T 1lv7_A 242 MVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=4.5e-35 Score=265.95 Aligned_cols=252 Identities=41% Similarity=0.730 Sum_probs=219.1
Q ss_pred ccC-CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 23 HED-PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 23 ~~~-~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
.+. .+.++|++++|++++++++.+.+.. +.....+.++|...+.+++|+||||||||+++++++++++.+++.+++.+
T Consensus 6 ~~~~~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~ 84 (476)
T 2ce7_A 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD 84 (476)
T ss_dssp CCCCSCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ccCCCCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence 344 6788999999999999999999876 67778889999988999999999999999999999999999999999999
Q ss_pred hhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
+...+.+.....++.+|..+....|+||||||+|.+..+++....+.+......+..++..++++....+++||++||.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 99888888888899999999999999999999999987765544444555566677777777655555689999999999
Q ss_pred CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 022768 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV 261 (292)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i 261 (292)
+.+++++++++||+..+.++.|+.++|.+|++.++.......++++..++..+.|++++||.++|++|...|..++...|
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I 244 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCee
Confidence 99999999989999999999999999999999999887777788899999999999999999999999999998888899
Q ss_pred cHHHHHHHHHHHhh
Q 022768 262 IHEDFMKAVRKLNE 275 (292)
Q Consensus 262 ~~~~~~~a~~~~~~ 275 (292)
+.+|+.+|+..+..
T Consensus 245 ~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 245 TMKDFEEAIDRVIA 258 (476)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999998864
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.8e-35 Score=268.43 Aligned_cols=264 Identities=39% Similarity=0.688 Sum_probs=226.2
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
..++.+|++++|+++++++|.+.+..++.....+..+|..++.++||+||||||||++|++++++++.+++.+++..+..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.+.....++.+|..+....|++|||||+|.+..++...........+..|+.+++. .....+++||+|||.++.+
T Consensus 277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~---~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG---LKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH---SCTTSCEEEEEEESCGGGB
T ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc---cccCCceEEEEecCCcccc
Confidence 9999999999999999999999999999999998776554444445555556655554 3445689999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-----
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERD----- 259 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~----- 259 (292)
++++++++||...+.++.|+.++|.+|++.++.......+.++..++..+.||+++|+..++++|...|..+...
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999899999999999999999999999998887778889999999999999999999999999999887532
Q ss_pred ------------cccHHHHHHHHHHHhhhhhhch-----hhhhhhhcCC
Q 022768 260 ------------YVIHEDFMKAVRKLNEAKKLES-----SAHYNADFGK 291 (292)
Q Consensus 260 ------------~i~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ 291 (292)
.|+.+|+.+|++.+.+...++. ...|+|++|-
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~ 482 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-------------
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCC
Confidence 5899999999999998776554 6789999984
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=251.89 Aligned_cols=253 Identities=38% Similarity=0.665 Sum_probs=205.1
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~ 104 (292)
..|+++|+++.|++++++.|.+.+..++.....+..+++..+.+++|+||||+|||++++++|..++.+++.++..++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC
Q 022768 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l 184 (292)
.+.+.....+..+|..+....|+++++||+|.++..+..... ......+..++..+++......+++++++|.++.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 777788888999999988888999999999998754422111 11223455677777766666788999999999999
Q ss_pred ChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC---ccCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhc--
Q 022768 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG---IAKHGEIDYEAVVKLA--EGFNGADLRNVCTEAGMSAIRAE-- 257 (292)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~---~~~~~~~~~~~l~~~~--~g~~~~di~~l~~~a~~~a~~~~-- 257 (292)
++++++++||+..++++.|+.++|.+||+.++.. .....+++++.++..+ .||+++||..+|++|...|.++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998854 2345678999999864 59999999999999999998752
Q ss_pred ---------CCcccHHHHHHHHHHHhhhhhhc
Q 022768 258 ---------RDYVIHEDFMKAVRKLNEAKKLE 280 (292)
Q Consensus 258 ---------~~~i~~~~~~~a~~~~~~~~~~~ 280 (292)
...|+.+|+.+|++.+.+..+.+
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCCCC---
T ss_pred hccccccccCCeecHHHHHHHHHHhcCCCChh
Confidence 23699999999999998865543
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=244.28 Aligned_cols=251 Identities=38% Similarity=0.647 Sum_probs=193.5
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
|+++|++++|++++++.|.+.+.. +.....+..+|...+.+++|+||||||||+++++++++++.+++.+++..+...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999998876 5666777788888899999999999999999999999999999999999998888
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCc-chHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
.+.....+..+|..+....|++|+|||+|.+..++...... .....+..+..++..++......++++|+|+|.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888888999999988889999999999997655332211 13344566777777777666667899999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID--YEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIH 263 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~--~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~ 263 (292)
+.+++++||...++++.|+.++|.++++.++.........+ ...++..+.|++++++..+++.|...|..++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99998889999999999999999999999987654443322 3678889999999999999999999999888889999
Q ss_pred HHHHHHHHHHhhhhh
Q 022768 264 EDFMKAVRKLNEAKK 278 (292)
Q Consensus 264 ~~~~~a~~~~~~~~~ 278 (292)
+|+.+|++.+.....
T Consensus 240 ~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 240 LNFEYAVERVLAGTA 254 (262)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChh
Confidence 999999999887544
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.4e-34 Score=262.88 Aligned_cols=268 Identities=33% Similarity=0.606 Sum_probs=212.5
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCcEEEE
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-DANFLKV 97 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-~~~~~~~ 97 (292)
...+....|+++|++|+|++++++.|.+.+..++.....+.. +..+++++||+||||||||++|+++|+.+ +.+++.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 444556789999999999999999999999877666555543 23567899999999999999999999999 8899999
Q ss_pred eccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-CCCCeEEEE
Q 022768 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIM 176 (292)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~vi~ 176 (292)
++.++...+.+.....++.+|..+....|+||||||+|.+.+.+......... ..+..++..+++.. ...+++||+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGH---HHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHH---HHHHHHHHHHhCcccCCCCEEEEe
Confidence 99998888888777788899999998899999999999998766554333333 34455566665543 356899999
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
|||.++.+++++++ ||...+.++.|+.++|..|++.++...... .+.+++.|+..+.||+++||..+|++|...|++
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998765432 456789999999999999999999999998887
Q ss_pred hc-------------------------------------------------CCcccHHHHHHHHHHHhhhhhh---chhh
Q 022768 256 AE-------------------------------------------------RDYVIHEDFMKAVRKLNEAKKL---ESSA 283 (292)
Q Consensus 256 ~~-------------------------------------------------~~~i~~~~~~~a~~~~~~~~~~---~~~~ 283 (292)
+. ...|+.+||.+|++.+.+.-+. ....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~ 434 (444)
T 2zan_A 355 KVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLK 434 (444)
T ss_dssp HHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred HHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 52 0258999999999999986544 3467
Q ss_pred hhhhhcCCC
Q 022768 284 HYNADFGKE 292 (292)
Q Consensus 284 ~~~~~~~~~ 292 (292)
.|.+.||.|
T Consensus 435 ~~~~~~~~~ 443 (444)
T 2zan_A 435 KFTEDFGQE 443 (444)
T ss_dssp HHTSSCTTT
T ss_pred HHHHHHcCC
Confidence 888889875
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=250.45 Aligned_cols=268 Identities=33% Similarity=0.581 Sum_probs=215.8
Q ss_pred hhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.+.+....++.+|++++|++++++.|.+.+..++.....+...+ .++.++||+||||||||++|+++++.++.+++.++
T Consensus 71 ~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp HHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 34455677899999999999999999999988766655554443 55788999999999999999999999999999999
Q ss_pred ccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC--CCCCeEEEE
Q 022768 99 SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD--QLGKVKMIM 176 (292)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~vi~ 176 (292)
+..+...+.+.....++.+|..+....|++|||||+|.+...+......... ..+..++..+.+.. ...+++||+
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR---RIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH---HHHHHHHHHHHC----CCCCEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH---HHHHHHHHHHhcccccCCCCEEEEE
Confidence 9999988888888999999999998889999999999997655332222222 33344444444332 345799999
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
+||.++.+++++++ ||...+.++.|+.++|.++++.++...... .+.++..++..+.||+++++..+|+.|...+++
T Consensus 227 atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir 304 (357)
T 3d8b_A 227 ATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304 (357)
T ss_dssp EESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred ecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 998899999999999999999988654332 334578899999999999999999999998887
Q ss_pred hc------------CCcccHHHHHHHHHHHhhhhhh---chhhhhhhhcCCC
Q 022768 256 AE------------RDYVIHEDFMKAVRKLNEAKKL---ESSAHYNADFGKE 292 (292)
Q Consensus 256 ~~------------~~~i~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 292 (292)
+. ...|+.+|+.+|+..+.+.... +..+.|++.||.+
T Consensus 305 ~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 305 SLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 43 2479999999999999985443 4467999999974
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-32 Score=233.08 Aligned_cols=247 Identities=41% Similarity=0.709 Sum_probs=209.3
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
....|+++|++++|++++++++.+.... +.....+...++..+.+++|+||||+||||+++++++.++.+++.++...+
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999988766 566778888888888889999999999999999999999999999998887
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.....+.....+..+|+.+....|+++++||+|.+...+..............+..++..+++......+++++++|.++
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 77777777777888998887777899999999998765533222233455566777777777666666788999999999
Q ss_pred CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 022768 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVI 262 (292)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~ 262 (292)
.+++++++++||+..+.++.|+.++|.+|++.+........+.++..++..+.|++++|+..++++|...|..++...|+
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999988777777888999999999999999999999999999888888899
Q ss_pred HHHHHHHH
Q 022768 263 HEDFMKAV 270 (292)
Q Consensus 263 ~~~~~~a~ 270 (292)
.+|+.+|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-33 Score=242.67 Aligned_cols=272 Identities=31% Similarity=0.592 Sum_probs=212.1
Q ss_pred hhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.+....-...|+.+|++++|++++++.|.+.+..+......+..++ .++.+++|+||||||||++++++++.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 6 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp HHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4445556678899999999999999999999988766666555544 457899999999999999999999999999999
Q ss_pred EeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
+++..+...+.+.....++.+|..+....|++|+|||+|.+...+..............+...++.........++++|+
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 99999988888888888999999999889999999999999876654433334444445555555433222235799999
Q ss_pred EeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 022768 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 255 (292)
Q Consensus 177 t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~ 255 (292)
+||.++.+++.+++ ||...+.++.|+.++|..+++.++...... .+.++..++..+.|++++++..+++.|...|.+
T Consensus 165 ~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 165 ATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred ecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 999999999999999999999988754332 234567888999999999999999999999887
Q ss_pred hc------------CCcccHHHHHHHHHHHhhhhhh---chhhhhhhhcCC
Q 022768 256 AE------------RDYVIHEDFMKAVRKLNEAKKL---ESSAHYNADFGK 291 (292)
Q Consensus 256 ~~------------~~~i~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 291 (292)
+. ...|+.+|+.+|+..+.+.... ...+.|++.||+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 243 ELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp TCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 64 2479999999999998874333 346678888875
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-33 Score=253.96 Aligned_cols=249 Identities=41% Similarity=0.700 Sum_probs=220.0
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~ 106 (292)
++++|++++|++++++++.+.+.. +.....+.+++...+.+++|+||||||||+++++++..++.+++.+++..+...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999998876 6667778888888888999999999999999999999999999999999988888
Q ss_pred cChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCCh
Q 022768 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (292)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~ 186 (292)
.+.....+..+|..+....|+++||||+|.+...+.........+....+..++..+++......+++++++|.++.+++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888888888988877778999999999997665443333355666778888888887666667899999999999999
Q ss_pred hhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 187 ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 187 ~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
++++++||+..+.++.|+.++|.+|++.++.......++++..++..+.|++++|+.+++++|...|..++...|+.+|+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999887777778889999999999999999999999999998888788999999
Q ss_pred HHHHHHHhhh
Q 022768 267 MKAVRKLNEA 276 (292)
Q Consensus 267 ~~a~~~~~~~ 276 (292)
.+|+..+...
T Consensus 265 ~~al~~v~~~ 274 (499)
T 2dhr_A 265 EEAADRVMML 274 (499)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=247.92 Aligned_cols=275 Identities=30% Similarity=0.597 Sum_probs=210.6
Q ss_pred CChhhhhhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
....+.+..-..+++.+|++++|++++++.|.+++..+......+...+ .++.++||+||||||||++|+++|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3344455556678999999999999999999999988766666665555 457899999999999999999999999999
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
++.+++..+...+.+.....+..+|..+....|+||||||+|.++..+...........+..+...+..... ....+++
T Consensus 176 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~ 254 (389)
T 3vfd_A 176 FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVL 254 (389)
T ss_dssp EEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEE
T ss_pred EEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEE
Confidence 999999999988888888889999999999999999999999998766544444445555555555544332 2235799
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMS 252 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~ 252 (292)
||+++|.++.+++.+++ ||...+.++.|+.++|.++|+.++...... .+.++..++..+.|++++++..+++.|...
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 998899999999999999999988754322 233567889999999999999999999999
Q ss_pred HHHh------------cCCcccHHHHHHHHHHHhhhhh---hchhhhhhhhcCCC
Q 022768 253 AIRA------------ERDYVIHEDFMKAVRKLNEAKK---LESSAHYNADFGKE 292 (292)
Q Consensus 253 a~~~------------~~~~i~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 292 (292)
+..+ ....|+.+|+.+++..+.+... .+....|++.||+.
T Consensus 333 ~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 333 PIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp HHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred HHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 9876 2347999999999998876543 34467888899863
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.1e-31 Score=228.22 Aligned_cols=244 Identities=42% Similarity=0.717 Sum_probs=207.7
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~ 105 (292)
.|+++|++++|.+++++++.+.... +.....+..+++..+.+++|+||||+||||++++++..++.+++.+++..+...
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 3789999999999999999988776 566778888888888889999999999999999999999999999998887776
Q ss_pred ccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
..+.....+..+|..+....|+++++||+|.+.............+....+..++..+++......+++++++|.++.++
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 66777777888898888778899999999998655432222223455667778888887666556788999999999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHED 265 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~ 265 (292)
+++++++||...+.++.|+.++|.+|++.++.......+.++..++..+.|++++||..+++.|...|..++...|+.+|
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~d 272 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHH
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 99999899999999999999999999999988777777888999999999999999999999999999888888899999
Q ss_pred HHHHH
Q 022768 266 FMKAV 270 (292)
Q Consensus 266 ~~~a~ 270 (292)
+.+|+
T Consensus 273 l~~a~ 277 (278)
T 1iy2_A 273 LEEAA 277 (278)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99885
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3.5e-35 Score=250.32 Aligned_cols=261 Identities=39% Similarity=0.661 Sum_probs=207.3
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
.+..|+.+|++++|++++++.+.+.+.. +.....+..++...+.+++|+||||||||++|+++++.++.+++.+++..+
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 4567889999999999999999998876 677788888888888999999999999999999999999999999998888
Q ss_pred hccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCC-cchHHHHHHHHHHHHHhhCCCC-CCCeEEEEEeCC
Q 022768 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQ-LGKVKMIMATNR 180 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~-~~~~~vi~t~~~ 180 (292)
...+.+.....+..+|..+....|++|+|||+|.+...+..+.. ..+......+..++..+++... ..++++|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR 160 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC
Confidence 77666665555667788888788899999999999765422110 0111111233445555544332 335899999999
Q ss_pred CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 022768 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDY 260 (292)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~ 260 (292)
++.+++.+.+++||...+.++.|+.++|.++|+.++.......+.+++.++..+.|++++++..+++.|...|..++...
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~ 240 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKE 240 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCS
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999998899999999999999999999999987766677788889999999999999999999999998777788
Q ss_pred ccHHHHHHHHHHHhhhhhhchhhh
Q 022768 261 VIHEDFMKAVRKLNEAKKLESSAH 284 (292)
Q Consensus 261 i~~~~~~~a~~~~~~~~~~~~~~~ 284 (292)
|+.+++.+|+..+.+....+...+
T Consensus 241 i~~~~~~~a~~~~~~~~~~~~~~~ 264 (268)
T 2r62_A 241 VRQQHLKEAVERGIAGLEKKLEHH 264 (268)
T ss_dssp CCHHHHHTSCTTCCCCCC------
T ss_pred cCHHHHHHHHHHHhhcchhhhhhc
Confidence 999999999999888766655443
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.2e-33 Score=273.09 Aligned_cols=258 Identities=40% Similarity=0.703 Sum_probs=214.6
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...+.++|++++|++++++.|.+++..++.....+..+++.++.+++|+||||+|||++++++|+.++.+++.+++..+.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 35678999999999999999999999988888888889999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+.+.++....+..+|..+....|++|||||+|.++..+..............+..++..+++.....+++||+|||.++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998777655444455666777788888877777778999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-----
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER----- 258 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~----- 258 (292)
+++++++++||...++++.|+.++|.+||+.++.......+.+++.++..+.||++++|..+|+.|...|..+..
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~ 708 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999989999999999999999999999999887777788889999999999999999999999999987642
Q ss_pred --------------------CcccHHHHHHHHHHHhhhhhhch
Q 022768 259 --------------------DYVIHEDFMKAVRKLNEAKKLES 281 (292)
Q Consensus 259 --------------------~~i~~~~~~~a~~~~~~~~~~~~ 281 (292)
..|+.+++.+|++.+.+.-+.+.
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~ 751 (806)
T 1ypw_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND 751 (806)
T ss_dssp ------------------CCTTTTTTSSCCCCCC---------
T ss_pred hhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHH
Confidence 24777888777766666544333
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.2e-27 Score=231.38 Aligned_cols=264 Identities=41% Similarity=0.688 Sum_probs=222.1
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~ 103 (292)
...++++|++|+|+++++++|.+.+..++.....+..+++.++.+++|+||||||||++++++++.++.+++.+++.++.
T Consensus 196 ~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHS
T ss_pred cccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhh
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+.+.+.....+..+|..+....|+++||||+|.+..+.............. .++..+.+......+.+|+++|.++.
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~---~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS---QLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHH---HHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHH---HHHHHhhhhcccccEEEecccCCchh
Confidence 888899999999999999988899999999999987654433333333334 44455555555678999999999999
Q ss_pred CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-----
Q 022768 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER----- 258 (292)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~----- 258 (292)
+++.+++.+||...+.++.|+.++|.++++.++.......+.++..++..+.|++++++..++.+|...+..+..
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 999999888999999999999999999999999887777788899999999999999999999999988876532
Q ss_pred ------------CcccHHHHHHHHHHHhhhhhhch-----hhhhhhhcC
Q 022768 259 ------------DYVIHEDFMKAVRKLNEAKKLES-----SAHYNADFG 290 (292)
Q Consensus 259 ------------~~i~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 290 (292)
..++.+++..++....+....+. ...|++..|
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~g 481 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCcccccccccc
Confidence 24667788888877765433222 345655554
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=6.4e-25 Score=189.08 Aligned_cols=176 Identities=24% Similarity=0.392 Sum_probs=131.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHh----hhCCCEEEEEcccccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAI 137 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~lDe~d~l 137 (292)
+..++.++||+||||||||++|+++|+.++.+++.+++..+.+.+.|.....+...|..+ +...|+||+|||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456778999999999999999999999999999999999999999999999999999888 4667899999999999
Q ss_pred cCCcCCCC--CcchHHHHHHHHHHHHHhh--------CCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHH
Q 022768 138 GGRRFSEG--TSADREIQRTLMELLNQLD--------GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207 (292)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~ 207 (292)
+++..+.. .......+..|+++++... ......++++|+|||.++.+++++++++||...+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 77443211 1133455667777765221 12244579999999999999999998778987776 479999
Q ss_pred HHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHH
Q 022768 208 RMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLR 243 (292)
Q Consensus 208 r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~ 243 (292)
|.+|++.++.. ..++.+.++..+.+|++.++.
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHH
Confidence 99999988763 356788999999999887765
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=2.4e-23 Score=184.92 Aligned_cols=236 Identities=20% Similarity=0.260 Sum_probs=160.1
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccchhc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIID 104 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~~~~ 104 (292)
|..+|++++|++++++.+........ .+..+++++||+||||+|||++|+++++.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 44559999999999988766654321 12345679999999999999999999999975 777777655332
Q ss_pred cccCh-------------------------------------------------HHHHHHHHHHHhhh---------CCC
Q 022768 105 KYIGE-------------------------------------------------SARLIREMFGYARD---------HQP 126 (292)
Q Consensus 105 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~---------~~~ 126 (292)
...+. ....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 22111 11222233322221 125
Q ss_pred EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEe-----------CCCCCCChhhcCCCCcc
Q 022768 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT-----------NRPDVLDPALLRPGRLD 195 (292)
Q Consensus 127 ~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~-----------~~~~~l~~~l~~~~r~~ 195 (292)
+||||||+|.+ ....+..|..+++. ....++++++. |.+..+++.+++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999999 56566655555432 22345444443 236678999999 885
Q ss_pred eEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH-
Q 022768 196 RKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL- 273 (292)
Q Consensus 196 ~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~- 273 (292)
. +.|++|+.+++.++++.++...... .+..++.++..+.+.+++++.++++.|...|..++...|+.+++.+++..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 4 8999999999999999887643322 222356677777734999999999999999999999999999999999884
Q ss_pred hhhhhhchhhhhhhhc
Q 022768 274 NEAKKLESSAHYNADF 289 (292)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (292)
....+.+....+++.|
T Consensus 332 ~~~~~~~~~~~~~~~~ 347 (368)
T 3uk6_A 332 DESRSTQYMKEYQDAF 347 (368)
T ss_dssp CHHHHHHHHC------
T ss_pred CHHHHHHHHHHhhhhh
Confidence 3334444455555543
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.91 E-value=1.6e-22 Score=177.63 Aligned_cols=225 Identities=18% Similarity=0.176 Sum_probs=169.2
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
.+...+.|.+|++++|.++.++.+..++..... ...+..+++|+||||||||++|+++++.++.+++.+++.
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 455678888999999999999999998875311 113456799999999999999999999999999999987
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-------------C
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-------------D 167 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~ 167 (292)
.+.. ...+...+.. ...+++|||||+|.+ ....+..|...++..... .
T Consensus 90 ~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 90 MIEK------SGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp GCCS------HHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred hccc------hhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 6521 1122222222 345689999999999 667777777777653210 1
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
..+++.+|+++|....+++++++ ||+..+.+++|+.+++..+++.++...... .+.....++..+.| +++.+..++
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHH
Confidence 11258899999998889999998 898999999999999999999888654322 22234556665555 888999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+.+..++.......|+.+++..++.....
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 99998888888888999999999877543
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.3e-22 Score=185.03 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=178.3
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CcEEEEeccchh
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID--ANFLKVVSSAII 103 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~--~~~~~~~~~~~~ 103 (292)
.|...|++++|++++++.+..++... ..+..+++++||+||||||||++|+++|+.++ .+++.+++..+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 45678999999999999998887643 22456678999999999999999999999998 899999999999
Q ss_pred ccccChHHHHHHHHHHHh---hhCCCEEEEEcccccccCCcCCCCCcc--------------------------------
Q 022768 104 DKYIGESARLIREMFGYA---RDHQPCIIFMDEIDAIGGRRFSEGTSA-------------------------------- 148 (292)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~---~~~~~~il~lDe~d~l~~~~~~~~~~~-------------------------------- 148 (292)
..+.+.... +...|..+ +...|++|||||+|.+++++.....+.
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999998887 88999988 667889999999999885543321000
Q ss_pred ------------------------------------------h------------------------------------H
Q 022768 149 ------------------------------------------D------------------------------------R 150 (292)
Q Consensus 149 ------------------------------------------~------------------------------------~ 150 (292)
. .
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~ 261 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMG 261 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC--------------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHh
Confidence 0 0
Q ss_pred H---------------------------------------------HHHHHHHHHHHhhCCCCCCCeEEEEE--------
Q 022768 151 E---------------------------------------------IQRTLMELLNQLDGFDQLGKVKMIMA-------- 177 (292)
Q Consensus 151 ~---------------------------------------------~~~~l~~~l~~~~~~~~~~~~~vi~t-------- 177 (292)
. .......+++.++. +...+++++|
T Consensus 262 ~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe--~~~~~~il~tn~~~~~i~ 339 (456)
T 2c9o_A 262 QLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALES--SIAPIVIFASNRGNCVIR 339 (456)
T ss_dssp ---------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTS--TTCCEEEEEECCSEEECB
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhc--cCCCEEEEecCCcccccc
Confidence 0 00122233333332 2234444444
Q ss_pred -eC---CCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHc-CCCCHHHHHHHHHHHHH
Q 022768 178 -TN---RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLA-EGFNGADLRNVCTEAGM 251 (292)
Q Consensus 178 -~~---~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~-~g~~~~di~~l~~~a~~ 251 (292)
++ .+..+++.+++ ||.. +.|++|+.++..++++..+...... .+.....++..+ .| +++....+++.|..
T Consensus 340 ~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~ 415 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANL 415 (456)
T ss_dssp TTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHH
T ss_pred ccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 22 16678899999 8855 6999999999999999877532221 122345566776 65 89999999999999
Q ss_pred HHHHhcCCcccHHHHHHHHHHHh-hhhhhchhhhhhhhc
Q 022768 252 SAIRAERDYVIHEDFMKAVRKLN-EAKKLESSAHYNADF 289 (292)
Q Consensus 252 ~a~~~~~~~i~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 289 (292)
.|..++...|+.+++.+++..+. ...+.+....|+..|
T Consensus 416 ~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~~~~~ 454 (456)
T 2c9o_A 416 LAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKY 454 (456)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC-----
T ss_pred HHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence 99999999999999999998874 344444555555544
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.89 E-value=6.2e-22 Score=172.71 Aligned_cols=221 Identities=20% Similarity=0.243 Sum_probs=166.6
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
...+.|.+|++++|.++.++.+..++..... . ...+.+++|+||+|+|||++|+++++.++.+++.+++..+
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 4567888999999999999999988765310 0 1245689999999999999999999999999998887665
Q ss_pred hccccChHHHHHHHHHHHhhh--CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC-----C--------
Q 022768 103 IDKYIGESARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-----D-------- 167 (292)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~-------- 167 (292)
.. .. .++..... ..+++|||||+|.+ ....+..+..+++..... .
T Consensus 75 ~~------~~---~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 75 EK------PG---DLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CS------HH---HHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred CC------hH---HHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 32 11 22222222 45689999999998 666777777777753200 0
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
...++.+|+++|.+..+++++.+ ||...+.+++|+.+++..+++.++...... .+.....++..+.| +++.+..++
T Consensus 135 ~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 211 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLF 211 (324)
T ss_dssp ECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHH
T ss_pred CCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 11357899999999999999988 898899999999999999999888654332 12234566777766 888999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
+.+...+.......|+.+++.+++....
T Consensus 212 ~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 212 RRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 9988777666677899999998887654
No 34
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.88 E-value=1.7e-22 Score=183.13 Aligned_cols=217 Identities=21% Similarity=0.255 Sum_probs=154.6
Q ss_pred hhcccCCCCCccccccccHHHH---HHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQI---RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++...++|.+|++++|+++.+ +.|...+... ...+++|+||||||||++++.+++.++.+++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 4666778889999999999999 7777777652 23689999999999999999999999999999
Q ss_pred EeccchhccccChHHHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
+++.... ...++.++..+ ....+.+|||||+|.+ ....+..|+..++. +.+
T Consensus 81 l~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v 135 (447)
T 3pvs_A 81 ISAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTI 135 (447)
T ss_dssp EETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSC
T ss_pred EEeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------Cce
Confidence 8865421 22233333333 2356799999999998 44455566666653 456
Q ss_pred EEEEEe--CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc-----CCCCC---CHHHHHHHcCCCCHHHH
Q 022768 173 KMIMAT--NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA-----KHGEI---DYEAVVKLAEGFNGADL 242 (292)
Q Consensus 173 ~vi~t~--~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~-----~~~~~---~~~~l~~~~~g~~~~di 242 (292)
++|+++ |....+++++.+ |+ .++.|++|+.+++..+++.++.... ....+ .++.++..+.| +.+.+
T Consensus 136 ~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~l 211 (447)
T 3pvs_A 136 TFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRA 211 (447)
T ss_dssp EEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHH
T ss_pred EEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHH
Confidence 777766 444578999999 77 5788999999999999999886521 11112 34666677766 78888
Q ss_pred HHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHhhhhh
Q 022768 243 RNVCTEAGMSAIRA--ERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 243 ~~l~~~a~~~a~~~--~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
..+++.+...+... +...|+.+++.+++.......+
T Consensus 212 ln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~d 249 (447)
T 3pvs_A 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFD 249 (447)
T ss_dssp HHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC--
T ss_pred HHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccC
Confidence 88888887766422 3457999999999876644333
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=4.9e-22 Score=172.29 Aligned_cols=224 Identities=19% Similarity=0.256 Sum_probs=160.8
Q ss_pred cc-cccccHHHHHHHHHHhhcccCChHHHHhcCC---CCCceEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEec
Q 022768 31 YS-AVGGLSDQIRELRESIELPLMNPELFLRVGI---KPPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVS 99 (292)
Q Consensus 31 ~~-~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~vll~G~~G~GKT~l~~~la~~l-------~~~~~~~~~ 99 (292)
++ +++|++++++.|.+.+..+.. .....++|+ .++.+++|+||||||||++++++++.+ ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 799999999999999876432 344444444 335579999999999999999999988 338999999
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
..+...+.+.....+...|..+ .+++|+|||+|.++....+ .......+..|..+++.. ..++.+|+++|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~ 177 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN-----RDDLVVILAGY 177 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC-----TTTCEEEEEEC
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC-----CCCEEEEEeCC
Confidence 9998888888887777777766 3579999999999754422 223456666666666642 25778888887
Q ss_pred CCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHH-------cCCCCHHHHHHHH
Q 022768 180 RPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKL-------AEGFNGADLRNVC 246 (292)
Q Consensus 180 ~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~-------~~g~~~~di~~l~ 246 (292)
... .+++.+++ ||...+.|++|+.+++..|++.++...... .+.....++.. ....+.+++..++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 643 24688888 999999999999999999999988754322 11123334443 2223689999999
Q ss_pred HHHHHHHHHh----cCCcccHHHHH
Q 022768 247 TEAGMSAIRA----ERDYVIHEDFM 267 (292)
Q Consensus 247 ~~a~~~a~~~----~~~~i~~~~~~ 267 (292)
+.|...+..+ ....++.+++.
T Consensus 256 ~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 256 DRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHh
Confidence 9998766555 23456666554
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.88 E-value=7.3e-21 Score=156.35 Aligned_cols=210 Identities=20% Similarity=0.209 Sum_probs=151.3
Q ss_pred cccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEE
Q 022768 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLK 96 (292)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~ 96 (292)
....++|..|++++|.++.++.+..++... ...+++|+||+|+|||++++.+++.+ ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 345678889999999999999999988652 23459999999999999999999876 345777
Q ss_pred EeccchhccccChHHHHHHHHHHH--hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGY--ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
+++...... ......+...... .....+.+|+|||+|.+ .......+..+++.. ..++.+
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~~ 135 (226)
T 2chg_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----SKSCRF 135 (226)
T ss_dssp EETTCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEEE
T ss_pred eccccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----CCCCeE
Confidence 776543221 0111111111111 01245789999999998 555666777777652 247888
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
|+++|.+..+.+.+.+ |+. .+.+++|+.++..++++.++...... .+.....++..+.| +++.+..+++.+...+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 9999998889999998 785 88999999999999999887643322 12234566677766 7777777777766544
Q ss_pred HHhcCCcccHHHHHHHHH
Q 022768 254 IRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 254 ~~~~~~~i~~~~~~~a~~ 271 (292)
..|+.+++.+++.
T Consensus 212 -----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----EVVDADTIYQITA 224 (226)
T ss_dssp -----SCBCHHHHHHHHH
T ss_pred -----ceecHHHHHHHhc
Confidence 5899999999875
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=4.9e-21 Score=170.59 Aligned_cols=225 Identities=21% Similarity=0.225 Sum_probs=163.0
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEec
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVS 99 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~ 99 (292)
...++++|+++.++.+..++...+.. ..+.+++|+||||+|||++++.+++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34488999999999999988653221 446789999999999999999999988 778888887
Q ss_pred cchhccc----------------cCh-HHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHH--HHHHHHHH
Q 022768 100 SAIIDKY----------------IGE-SARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADRE--IQRTLMEL 159 (292)
Q Consensus 100 ~~~~~~~----------------~~~-~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~--~~~~l~~~ 159 (292)
....+.. .+. ....+..++...... .+.+|+|||+|.+ ... .+..+..+
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l-----------~~~~~~~~~l~~l 155 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL-----------PKRPGGQDLLYRI 155 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH-----------HHSTTHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh-----------cccCCCChHHHhH
Confidence 6532210 011 222334444443333 3679999999998 333 56677777
Q ss_pred HHHhhCCCCCCCeEEEEEeCCC---CCCChhhcCCCCcce-EEEccCCCHHHHHHHHHHHHcCc---cCCCCCCHHHHHH
Q 022768 160 LNQLDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGI---AKHGEIDYEAVVK 232 (292)
Q Consensus 160 l~~~~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~i~~~~~~~~---~~~~~~~~~~l~~ 232 (292)
++.........++.+|+++|.+ ..+++.+.+ ||.. .+.|++|+.++..++++.++... ....+...+.++.
T Consensus 156 ~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 233 (387)
T 2v1u_A 156 TRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAA 233 (387)
T ss_dssp HHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHH
T ss_pred hhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 7765533214578899999887 678889988 7765 88999999999999999887531 1112334566777
Q ss_pred HcC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 233 LAE---GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 233 ~~~---g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
.+. | +++.+..+++.|...|...+...|+.+++.+++..+...
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 776 6 888999999999988887788889999999999887543
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.85 E-value=1.1e-20 Score=165.00 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=140.3
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
+..+.++|.+|++++|++++++.+..++... ..+..++++||||+|||++++++++.++.+++++++.
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 3445688899999999999999999998742 3456678889999999999999999999999999976
Q ss_pred chhccccChHHHHHHHHHHHhhh-----CCCEEEEEcccccccCCcCCCCCcch-HHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 101 AIIDKYIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSAD-REIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~il~lDe~d~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
... ...++..+..... ..+.+|+|||+|.+ . ...+..|..+++... .++.+
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l-----------~~~~~~~~L~~~le~~~-----~~~~i 139 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS-----------GLAESQRHLRSFMEAYS-----SNCSI 139 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG-----------GGHHHHHHHHHHHHHHG-----GGCEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCccc-----------CcHHHHHHHHHHHHhCC-----CCcEE
Confidence 532 2223332222221 25689999999999 5 667778888877643 46789
Q ss_pred EEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc-------CccCC-CC-CCHHHHHHHcCCCCHHHHHHH
Q 022768 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA-------GIAKH-GE-IDYEAVVKLAEGFNGADLRNV 245 (292)
Q Consensus 175 i~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~-------~~~~~-~~-~~~~~l~~~~~g~~~~di~~l 245 (292)
|+++|.+..+++++++ || ..+.|++|+.+++.++++.+.. ..... .+ ..++.++..+.| +.+++...
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 88 5799999999998766554332 11111 12 234556666665 44444444
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 246 CTEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 246 ~~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
++. .+ ....|+.+++.+++..
T Consensus 216 L~~---~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 216 LDS---YS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHH---HG---GGTCBCC---------
T ss_pred HHH---Hh---ccCCCCHHHHHHHhCC
Confidence 444 33 3345777777766544
No 39
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.85 E-value=9.6e-20 Score=151.51 Aligned_cols=209 Identities=17% Similarity=0.244 Sum_probs=150.8
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
.+....++|..|++++|.++.++.|...+... ..+..++|+||+|+|||++++.+++.+...
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 78 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 78 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 34456778889999999999999999988652 334579999999999999999999987542
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
++.+.... ......+..++.... ...+.+|+|||+|.+ +..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~ 141 (250)
T 1njg_A 79 PCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRH 141 (250)
T ss_dssp CCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHH
T ss_pred CCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHH
Confidence 12222111 112233444444432 234689999999998 555
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l 230 (292)
....+..++.. ...++.+|++++.+..+.+.+.+ |+ ..+.+++++.++..++++.++...... .+.....+
T Consensus 142 ~~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l 213 (250)
T 1njg_A 142 SFNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 213 (250)
T ss_dssp HHHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 56666665542 23578899999988888888888 65 789999999999999999887643222 22235677
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+..+.| +++.+..+++.|...+ ...|+.+++.+++
T Consensus 214 ~~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 214 ARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 888877 8999999998875332 3479999998875
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=7.4e-20 Score=165.88 Aligned_cols=221 Identities=17% Similarity=0.230 Sum_probs=152.9
Q ss_pred CCCCCcccccc-c--cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEE
Q 022768 25 DPGNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLK 96 (292)
Q Consensus 25 ~~~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~ 96 (292)
-.|..+|++++ | ...+...+..+...+ ....+++|+||||+||||+++++++.+ +.++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~------------~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP------------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST------------TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34557999988 5 344455555554432 115689999999999999999999988 788899
Q ss_pred EeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEE
Q 022768 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 176 (292)
+++..+...+...........|.......+.+|+|||+|.+.. ....+..+..+++.+.. .+.. +|+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~~---~~~~-iIi 232 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQ-IVI 232 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHHT---TTCE-EEE
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---CCCe-EEE
Confidence 9887764433222111111122222222678999999999842 22456667777665532 2344 444
Q ss_pred EeCC-CCC---CChhhcCCCCcc--eEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 022768 177 ATNR-PDV---LDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEA 249 (292)
Q Consensus 177 t~~~-~~~---l~~~l~~~~r~~--~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a 249 (292)
+++. +.. +++++++ ||. ..+.+++|+.+++..+++..+...... .+..++.++..+.| +.+++..+++.+
T Consensus 233 tt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp EESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 5544 443 7889988 664 788999999999999999887643322 22336778888876 999999999999
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 250 GMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 250 ~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
...|...+. .|+.+++.++++...
T Consensus 310 ~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 310 LVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 998876654 699999999998765
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=2e-19 Score=158.34 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=148.2
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE----Ee
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK----VV 98 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~----~~ 98 (292)
....++.+|++++|.++.++.+...... ....++||+||||||||++|+++++.++..... ++
T Consensus 15 ~~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~ 81 (350)
T 1g8p_A 15 AKTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVS 81 (350)
T ss_dssp ---CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTC
T ss_pred CCCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccc
Confidence 3456788999999999988776554432 123469999999999999999999988631100 11
Q ss_pred ccchhc---------------------cccChHHH-HH-----HHHHHHh---------hhCCCEEEEEcccccccCCcC
Q 022768 99 SSAIID---------------------KYIGESAR-LI-----REMFGYA---------RDHQPCIIFMDEIDAIGGRRF 142 (292)
Q Consensus 99 ~~~~~~---------------------~~~~~~~~-~~-----~~~~~~~---------~~~~~~il~lDe~d~l~~~~~ 142 (292)
+..... ...+.... .. ...+... ....+++|+|||+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l----- 156 (350)
T 1g8p_A 82 SPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL----- 156 (350)
T ss_dssp CSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----
T ss_pred ccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhC-----
Confidence 111000 00001011 00 1111111 1123689999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhh----CC----CCCCCeEEEEEeCCCC-CCChhhcCCCCcceEEEccCC-CHHHHHHHH
Q 022768 143 SEGTSADREIQRTLMELLNQLD----GF----DQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLP-NEQSRMEIL 212 (292)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~~----~~----~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~~i~l~~p-~~~~r~~i~ 212 (292)
....+..|..+++... .. ....++.+|+|+|..+ .+++++++ ||...+.+++| +.+++.+|+
T Consensus 157 ------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 157 ------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp ------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 6777788888877521 00 0012688999999744 79999999 99888999998 677777887
Q ss_pred HHHHc---------------------------CccCCCCCCH---HHHHHHcCC--C-CHHHHHHHHHHHHHHHHHhcCC
Q 022768 213 KIHAA---------------------------GIAKHGEIDY---EAVVKLAEG--F-NGADLRNVCTEAGMSAIRAERD 259 (292)
Q Consensus 213 ~~~~~---------------------------~~~~~~~~~~---~~l~~~~~g--~-~~~di~~l~~~a~~~a~~~~~~ 259 (292)
+..+. .....-.++. ..+.....+ . +.+.+..+++.|...|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 65311 0000112332 333333322 2 6799999999999999999988
Q ss_pred cccHHHHHHHHHHHhhhhh
Q 022768 260 YVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 260 ~i~~~~~~~a~~~~~~~~~ 278 (292)
.|+.+|+.+|+..+..+..
T Consensus 309 ~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 309 AVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCCHHHHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHHHHhhcc
Confidence 9999999999998876654
No 42
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.83 E-value=1.4e-19 Score=159.41 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=152.5
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------Cc
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID------AN 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~------~~ 93 (292)
.+....++|.+|++++|++++++.+...+... ...+++|+||||+|||++++++++.++ ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 35556789999999999999999999987542 224599999999999999999999864 35
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHh-------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHH
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYA-------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l 160 (292)
++.+++...... +.....+.. +... ....+.+|+|||+|.+ ....+..+..++
T Consensus 92 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll~~l 157 (353)
T 1sxj_D 92 ILELNASDERGI--SIVREKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALRRTM 157 (353)
T ss_dssp EEEECSSSCCCH--HHHTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHHHHH
T ss_pred eEEEccccccch--HHHHHHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHHHHH
Confidence 777776553210 011111111 1110 1134579999999998 666677777777
Q ss_pred HHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCH
Q 022768 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNG 239 (292)
Q Consensus 161 ~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~ 239 (292)
+... ....+|+++|.+..+.+.+++ |+ ..+.+++|+.++...+++..+...... .+..++.++..+.| ++
T Consensus 158 e~~~-----~~~~~il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~ 228 (353)
T 1sxj_D 158 ETYS-----GVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DL 228 (353)
T ss_dssp HHTT-----TTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CH
T ss_pred HhcC-----CCceEEEEeCchhhCcchhhc--cC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 7532 456778888998889999998 77 488999999999999999887543322 22235667777776 77
Q ss_pred HHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHH
Q 022768 240 ADLRNVCTEAGMSAIRAERD-YVIHEDFMKAVR 271 (292)
Q Consensus 240 ~di~~l~~~a~~~a~~~~~~-~i~~~~~~~a~~ 271 (292)
+.+.++++.+...+...+.. .|+.+++.+++.
T Consensus 229 r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 229 RRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 77777887777665443333 799999887765
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.83 E-value=4.9e-19 Score=154.92 Aligned_cols=220 Identities=20% Similarity=0.234 Sum_probs=156.7
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch---
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI--- 102 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~--- 102 (292)
..+..+++++|++++++.+..++.. +.+++|+||||+|||++++++++.++.++..+++...
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 3444668899999999999887754 4589999999999999999999999999988886421
Q ss_pred ---hccccChHHHHHHHHHHHhhhCC---CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC------CCCCC
Q 022768 103 ---IDKYIGESARLIREMFGYARDHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDQLG 170 (292)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~---~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~ 170 (292)
.+....... ...+ ..... .++|+|||+|.+ ....+..|...++.... .....
T Consensus 86 ~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 86 SDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp HHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred hhcCCceeecCC---CCce--EeccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 111000000 0000 00011 269999999998 67778888888775321 11233
Q ss_pred CeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccC--------------------CCCC
Q 022768 171 KVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK--------------------HGEI 225 (292)
Q Consensus 171 ~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~--------------------~~~~ 225 (292)
++++|+|+|..+ .+++++++ ||...+.+++|+.+++.+|++........ .-.+
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 677888888543 38899999 99888999999999999999988764211 0111
Q ss_pred C---HHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 226 D---YEAVVKLA-------------------EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 226 ~---~~~l~~~~-------------------~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
+ .+.++... .|.+++.+..+++.|...|..+++..|+.+|+.+++..+-.+..
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 2 22222211 25589999999999999999999999999999999998875443
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=2.1e-19 Score=155.44 Aligned_cols=241 Identities=23% Similarity=0.302 Sum_probs=154.5
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccCh
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE 109 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~~ 109 (292)
+.++|++++++.+...+..++........+ +...+.+++|+||||||||++++++++.++.+++.+++..+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999998886532111000000 0134678999999999999999999999999999999988764 33332
Q ss_pred -HHHHHHHHHHHh-----hhCCCEEEEEcccccccCCcCCCCCcc-hHHHHHHHHHHHHHhhC-----CCCCCCeEEEEE
Q 022768 110 -SARLIREMFGYA-----RDHQPCIIFMDEIDAIGGRRFSEGTSA-DREIQRTLMELLNQLDG-----FDQLGKVKMIMA 177 (292)
Q Consensus 110 -~~~~~~~~~~~~-----~~~~~~il~lDe~d~l~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-----~~~~~~~~vi~t 177 (292)
....+..++... ....+++|+|||+|.+........... ....+..|..+++.... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 223344444422 112357999999999965443221111 11234555555553210 012346788888
Q ss_pred e----CCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHH-------------cCccCC-CCCCHHHHHHHc-----
Q 022768 178 T----NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA-------------AGIAKH-GEIDYEAVVKLA----- 234 (292)
Q Consensus 178 ~----~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~-------------~~~~~~-~~~~~~~l~~~~----- 234 (292)
+ +.+..+++++.+ ||...+.|++|+.+++.+|++... .+.... .+..++.++..+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 5 456678899998 998889999999999999998321 111101 112244555554
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhcCC------cccHHHHHHHHHHHh
Q 022768 235 --EGFNGADLRNVCTEAGMSAIRAERD------YVIHEDFMKAVRKLN 274 (292)
Q Consensus 235 --~g~~~~di~~l~~~a~~~a~~~~~~------~i~~~~~~~a~~~~~ 274 (292)
.+.+.+.+..+++.+...+...... .|+.+++.+++....
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 1348899999999987665433221 499999999987654
No 45
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=1.1e-19 Score=161.88 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=151.0
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----------CCcEEEEec
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----------DANFLKVVS 99 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----------~~~~~~~~~ 99 (292)
.++++|+++.++.+...+...... ..+.+++|+||+|+|||++++.+++.+ +.+++.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 378999999999999888653221 345689999999999999999999987 888999987
Q ss_pred cchh-ccc-----------------cCh-HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHH-HHHH
Q 022768 100 SAII-DKY-----------------IGE-SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT-LMEL 159 (292)
Q Consensus 100 ~~~~-~~~-----------------~~~-~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~-l~~~ 159 (292)
.... +.. .+. ....+..++....... .+|+|||+|.+.... .+.. +..+
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~----------~~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR----------GGDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST----------TSHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC----------CCceeHHHH
Confidence 6543 100 000 1222333333333333 499999999983211 1233 3343
Q ss_pred HHHhhCCCCCCCeEEEEEeCCC---CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC-c--cCCCCCCHHHHHHH
Q 022768 160 LNQLDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-I--AKHGEIDYEAVVKL 233 (292)
Q Consensus 160 l~~~~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~-~--~~~~~~~~~~l~~~ 233 (292)
+... .++.+|+++|.. ..+++.+.+ ||...+.|++|+.++..++++.++.. . ....+..++.++..
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAI 230 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHH
Confidence 3321 578899999886 678888888 87779999999999999999988752 1 11122234566666
Q ss_pred cC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 234 AE---GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 234 ~~---g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+. | +++.+..+++.|...|. +...|+.+++.+++..+..
T Consensus 231 ~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 231 SAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 65 5 67788888888887775 5568999999999988764
No 46
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=8.3e-19 Score=156.00 Aligned_cols=226 Identities=24% Similarity=0.309 Sum_probs=156.0
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCcEEEEecc
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------DANFLKVVSS 100 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l------~~~~~~~~~~ 100 (292)
+....++++|+++.++.|...+...... ..+..++|+||+|+|||++++.+++.+ +.+++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3445588999999999999987653221 446789999999999999999999988 7888888865
Q ss_pred chhcc----------------ccC-hHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 101 AIIDK----------------YIG-ESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 101 ~~~~~----------------~~~-~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
..... ..+ ........++...... .|.+|+|||+|.+.... + ...+..++..
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~---~~~l~~l~~~ 155 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------N---DDILYKLSRI 155 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------C---STHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------c---CHHHHHHhhc
Confidence 43210 001 1223334444444433 37899999999984211 1 2234444444
Q ss_pred hhCCCCCCCeEEEEEeCCC---CCCChhhcCCCCcc-eEEEccCCCHHHHHHHHHHHHcCccCCCCCC---HHHHHHHcC
Q 022768 163 LDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEID---YEAVVKLAE 235 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~-~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~---~~~l~~~~~ 235 (292)
++.. ...++.+|++++.. ..+.+.+.+ ||. ..+.+++++.++..++++.++........++ ...++..+.
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4322 33578889999876 456777777 654 4899999999999999998765322112222 344555555
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 236 ---GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 236 ---g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
| +++.+..++..+...|...+...|+.+++.+++..+..
T Consensus 233 ~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 233 REHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 5 78889999999998888777788999999999988764
No 47
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.82 E-value=1.7e-18 Score=151.63 Aligned_cols=225 Identities=20% Similarity=0.225 Sum_probs=159.3
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
..-....+.+|++++|.+.+++.+...+.... ..+ .+..+++|+||||+||||+++.+++.++.++...+..
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence 33455677799999999999888887765310 001 2346799999999999999999999999887665543
Q ss_pred chhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC-------C------C
Q 022768 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-------F------D 167 (292)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~------~ 167 (292)
.... ...+...+.. ...+.|++|||++.+ ....++.+...+..... . .
T Consensus 86 ~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l-----------~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 86 VLVK------QGDMAAILTS--LERGDVLFIDEIHRL-----------NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp TCCS------HHHHHHHHHH--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCCCC-------------
T ss_pred HhcC------HHHHHHHHHH--ccCCCEEEEcchhhc-----------CHHHHHHHHHHHHhcccceeeccCcccccccc
Confidence 3211 1122222222 234579999999998 33445555544432110 0 0
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 022768 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVC 246 (292)
Q Consensus 168 ~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~ 246 (292)
....+.++++++.+..+++.+++ ||...+.+++++.++..++++......... .+.....++..+.| +++.+..++
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll 223 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLT 223 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 11246788888889999999999 998889999999999999999877643322 11224567777777 889999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 247 TEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 247 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
+.+...|..++...|+.+++.+++..+..
T Consensus 224 ~~~~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 224 KRVRDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 99999998888888999999999998753
No 48
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.82 E-value=4.4e-19 Score=157.43 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=148.9
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
..+...+.|.+|++++|+++.++.|...+... ..++.++|+||+|+|||++++.+++.+++.
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 71 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 34556788889999999999999999988642 334578999999999999999999988642
Q ss_pred ------------------EEEEeccchhccccChHHHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCcchHH
Q 022768 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADRE 151 (292)
Q Consensus 94 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~~~~~ 151 (292)
++.++.... .. ...++.++..+. ...+.+|+|||+|.+ +..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~ 134 (373)
T 1jr3_A 72 PCGVCDNCREIEQGRFVDLIEIDAASR--TK----VEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRH 134 (373)
T ss_dssp CCSSSHHHHHHHTSCCSSCEEEETTCS--CC----SSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHH
T ss_pred CCcccHHHHHHhccCCCceEEeccccc--CC----HHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHH
Confidence 222222110 01 112334444443 234689999999998 555
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHH
Q 022768 152 IQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAV 230 (292)
Q Consensus 152 ~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l 230 (292)
....|...++. +..++.+|++++.+..+.+.+++ |+ ..+.+++|+.++..++++.++...... .+.....+
T Consensus 135 ~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 135 SFNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp HHHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 66666666543 34578899999888888899988 76 789999999999999999887643322 11224567
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 022768 231 VKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAV 270 (292)
Q Consensus 231 ~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 270 (292)
+..+.| +++.+.++++.+...+ ...|+.+++.+++
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 777877 8889988888875432 3457877776654
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=3.4e-19 Score=155.48 Aligned_cols=219 Identities=15% Similarity=0.204 Sum_probs=145.6
Q ss_pred CCCCcccccc-c--cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 26 PGNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 26 ~~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
.|..+|++++ | ...+...+..++..+ ...+.+++|+||||+|||++++++++.+ +.+++++++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 4667899987 4 455566666666543 1245789999999999999999999988 889999998
Q ss_pred cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
..+.....+.........|.... ..+++|+|||+|.+.. ....+..+..+++.... .+..+++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~~---~~~~iii~~~~ 140 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLYL---LEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 77654433222211112222222 2368999999999832 22456666666665431 13445555555
Q ss_pred CCC---CCChhhcCCCCcc--eEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH-
Q 022768 180 RPD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMS- 252 (292)
Q Consensus 180 ~~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~- 252 (292)
.+. .+++++.+ ||. ..+.+++ +.+++.++++.++...... .+..++.++..+ | +.+++..++..+...
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 544 57889988 764 6789999 9999999999888643322 122256677777 5 788888888887766
Q ss_pred --HHH-hcCCcc-cHHHHHHHHHHH
Q 022768 253 --AIR-AERDYV-IHEDFMKAVRKL 273 (292)
Q Consensus 253 --a~~-~~~~~i-~~~~~~~a~~~~ 273 (292)
++. .....| +.+++.+++...
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHH
Confidence 111 223457 888888887653
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=1.1e-18 Score=152.00 Aligned_cols=196 Identities=21% Similarity=0.255 Sum_probs=139.3
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cE
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NF 94 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~ 94 (292)
.+..+.++|.+|++++|++++++.+..++... ...+++|+||+|+|||++++.+++.+.. .+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 34556789999999999999999999887652 2335999999999999999999998632 36
Q ss_pred EEEeccchhccccChHHHHHHHHHHHh-h-hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCe
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYA-R-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (292)
+.+++....+. ......+....... . ...+.+|+|||+|.+ ....+..|..+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 67766543211 01111122211111 1 145789999999998 666677777777652 2477
Q ss_pred EEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 022768 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAG 250 (292)
Q Consensus 173 ~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~ 250 (292)
.+|++++.+..+.+.+.+ |+ ..+.+++++.++...+++..+...... .+...+.++..+.| +++.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hC-cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 889999998889999988 77 478999999999999999887644322 22234566777766 7777777776654
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=1.3e-19 Score=167.72 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=143.2
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCC-hHHHHhcCC---CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMN-PELFLRVGI---KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~-~~~~~~~~~---~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..+.++|.+|++++|++++++.|.+++...... ...+...|. .+.++++|+||||+|||++|++++++++.+++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4445788899999999999999999998652111 111222222 245789999999999999999999999999999
Q ss_pred EeccchhccccChHHHHH---------HHHHHHh-----hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 97 VVSSAIIDKYIGESARLI---------REMFGYA-----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~---------~~~~~~~-----~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
+++......... ...+ ...|..+ ....+.+|+|||+|.+... .......+..+++.
T Consensus 108 in~s~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 108 QNASDVRSKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCRK 177 (516)
T ss_dssp ECTTSCCCHHHH--HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHHH
T ss_pred EeCCCcchHHHH--HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHHh
Confidence 998775432110 0000 0111111 1245789999999998432 12233455555554
Q ss_pred hhCCCCCCCeEEEEEeCCC--CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCH
Q 022768 163 LDGFDQLGKVKMIMATNRP--DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNG 239 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~--~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~ 239 (292)
. +..+|++++.. ..+ +.++ ++...+.|++|+.+++.+++...+...... .+..+..++..+.|
T Consensus 178 ~-------~~~iIli~~~~~~~~l-~~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G--- 243 (516)
T 1sxj_A 178 T-------STPLILICNERNLPKM-RPFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG--- 243 (516)
T ss_dssp C-------SSCEEEEESCTTSSTT-GGGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT---
T ss_pred c-------CCCEEEEEcCCCCccc-hhhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Confidence 1 22244455443 233 3344 344789999999999999998776533222 22336677777765
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 240 ADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 240 ~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
+++.+++.....+. ....|+.+++.+++....
T Consensus 244 -diR~~i~~L~~~~~--~~~~It~~~v~~~~~~~~ 275 (516)
T 1sxj_A 244 -DIRQVINLLSTIST--TTKTINHENINEISKAWE 275 (516)
T ss_dssp -CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHh--cCCCCchHHHHHHHHhhc
Confidence 45555544443333 445688888888877543
No 52
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.82 E-value=2e-19 Score=156.19 Aligned_cols=211 Identities=21% Similarity=0.214 Sum_probs=142.2
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFL 95 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~ 95 (292)
+....++|.+|++++|++++++.+...+.. ....+++|+||+|+|||++++.+++.+ +.+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 455678999999999999999999887754 122359999999999999999999986 33577
Q ss_pred EEeccchhccccChHHHHHHHHHHHhh--hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 96 KVVSSAIIDKYIGESARLIREMFGYAR--DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
.+++....+. ......+........ ...+.+++|||+|.+ ....+..|..+++ ....++.
T Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le-----~~~~~~~ 134 (319)
T 2chq_A 73 EMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTME-----MYSKSCR 134 (319)
T ss_dssp EEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGTS-----SSSSSEE
T ss_pred EEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHHH-----hcCCCCe
Confidence 7777654321 111222222221111 144789999999998 4444444444432 2335788
Q ss_pred EEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 022768 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMS 252 (292)
Q Consensus 174 vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~ 252 (292)
+|+++|.+..+.+.+++ |+ ..+.+++|+.++..+++..++...... .+..+..++..+.| +.+.+.++++.+.
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~-- 208 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA-- 208 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH--
T ss_pred EEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH--
Confidence 99999999899999998 77 489999999999999999887654332 11223445555554 5555555555443
Q ss_pred HHHhcCCcccHHHHHHHHH
Q 022768 253 AIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 253 a~~~~~~~i~~~~~~~a~~ 271 (292)
.. ...|+.+++.+++.
T Consensus 209 -~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 209 -AI--GEVVDADTIYQITA 224 (319)
T ss_dssp -HS--SSCBCHHHHHHHTT
T ss_pred -Hc--CCCCCHHHHHHHHC
Confidence 22 34577777765543
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.81 E-value=5.3e-19 Score=147.18 Aligned_cols=210 Identities=14% Similarity=0.162 Sum_probs=144.0
Q ss_pred ccCCC-CCcccccccc---HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CcEE
Q 022768 23 HEDPG-NVSYSAVGGL---SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFL 95 (292)
Q Consensus 23 ~~~~~-~~~~~~l~g~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~ 95 (292)
....+ +.+|++++|. ..+++.+..++.. ..+.+++|+||||+|||++++.+++.+. .+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 18 PVHLPDDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp ECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 33444 4899999972 4666777666543 2467899999999999999999998874 6788
Q ss_pred EEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEE
Q 022768 96 KVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (292)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 175 (292)
.+++..+....... +. ....+.+|+|||+|.+.. ....+..+..+++.... ...+.+|
T Consensus 85 ~~~~~~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii 142 (242)
T 3bos_A 85 YIPLGIHASISTAL--------LE--GLEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLI 142 (242)
T ss_dssp EEEGGGGGGSCGGG--------GT--TGGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEE
T ss_pred EEEHHHHHHHHHHH--------HH--hccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEE
Confidence 88887765443211 11 113457999999999832 22235556666654321 1233355
Q ss_pred EEeCC-CC---CCChhhcCCCCcc--eEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 176 MATNR-PD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 176 ~t~~~-~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
++++. +. .+.+.+.+ ||. ..+.+++|+.+++.+++..++...... .+...+.++..+.| +.+++..+++.
T Consensus 143 ~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 219 (242)
T 3bos_A 143 VSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDR 219 (242)
T ss_dssp EEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred EEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 55553 33 34577877 664 889999999999999999888643322 12234566677766 89999999999
Q ss_pred HHHHHHHhcCCcccHHHHHHHHH
Q 022768 249 AGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 249 a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
+..+|...+ ..|+.+++.++++
T Consensus 220 ~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 220 LDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHhC-CCCcHHHHHHHhh
Confidence 998886555 4699999998874
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.81 E-value=1.7e-18 Score=154.34 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=155.3
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhc----CCcEEEEeccchh
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK--GVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAII 103 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~~~~ 103 (292)
.+++++|+++.++.+..++...... ..+. +++|+||+|+|||++++.+++.+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3478999999999999988653211 2334 89999999999999999999988 5677888865432
Q ss_pred cc--c--------------cC-hHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 104 DK--Y--------------IG-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 104 ~~--~--------------~~-~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
.. . .+ ........+...... ..|.+|+|||+|.+ +......|..++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 10 0 01 112222222222222 34789999999988 55555555555533210
Q ss_pred CCCCCCeEEEEEeCCC---CCCChhhcCCCCcce-EEEccCCCHHHHHHHHHHHHcCccCCCCC---CHHHHHHHc----
Q 022768 166 FDQLGKVKMIMATNRP---DVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIAKHGEI---DYEAVVKLA---- 234 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~i~~~~~~~~~~~~~~---~~~~l~~~~---- 234 (292)
....++.+|+++|.+ ..+.+.+.+ ||.. .+.|++++.++..++++..+........+ .+..++..+
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 001378899999887 567788877 7764 79999999999999999887532111122 345667777
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 235 -----EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 235 -----~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
.| +++.+..+++.|...|..++...|+.+++.+++..+..
T Consensus 232 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 232 PLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp TTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred cCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 45 78899999999999998888888999999999887653
No 55
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=1.4e-18 Score=151.18 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=148.7
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEE
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFL 95 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~ 95 (292)
+..+.++|.+|++++|+++.++.|...+... . ..+++|+||+|+|||++++.+++.+ +.+++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 3445688889999999999999999987642 2 2349999999999999999999986 33567
Q ss_pred EEeccchhccccChHHHHHHHHHHHhh-------hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 96 KVVSSAIIDKYIGESARLIREMFGYAR-------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
.+++....+ ...++..+.... ...+.+|+|||+|.+ ....+..|..+++..
T Consensus 77 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 77 ELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY----- 134 (323)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT-----
T ss_pred EecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc-----
Confidence 776554211 223333333322 234789999999998 555666677776652
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 169 ~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
..++.+|++++.+..+.+.+++ |+ ..+.+++|+.++..++++.++...... .+.....++..+.| +++.+.++++
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~ 210 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQ 210 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2578888899998889999998 77 489999999999999999877543222 12234567777776 7777777776
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 248 EAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 248 ~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
.+.. .. ..|+.+++.+++..
T Consensus 211 ~~~~---~~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 211 STVA---GH--GLVNADNVFKIVDS 230 (323)
T ss_dssp HHHH---HH--SSBCHHHHHHHHTS
T ss_pred HHHh---cC--CCcCHHHHHHHHCC
Confidence 6542 21 45888888777654
No 56
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=5.1e-19 Score=150.63 Aligned_cols=225 Identities=20% Similarity=0.223 Sum_probs=141.5
Q ss_pred ccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh-ccccC
Q 022768 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-DKYIG 108 (292)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~-~~~~~ 108 (292)
....++|..+..+.+....... .......+..++.++||+||||||||++|+++++.++.+++.+++.... +....
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred HhcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchH
Confidence 3456889888877776642211 1112222345678899999999999999999999999999999876532 11122
Q ss_pred hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC-CCCCeEEEEEeCCCCCCCh-
Q 022768 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPDVLDP- 186 (292)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~vi~t~~~~~~l~~- 186 (292)
.....+..+|..+....+++|+|||+|.+++..... ..........|..+ +.... ...++++|+|+|.++.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcchh
Confidence 233566778887777778999999999997554221 11233334444443 33222 2346778999998877666
Q ss_pred hhcCCCCcceEEEccCCCH-HHHHHHHHHHHcCccCCCCCCHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHhcCCcc
Q 022768 187 ALLRPGRLDRKIEIPLPNE-QSRMEILKIHAAGIAKHGEIDYEAVVKLAEGF----NGADLRNVCTEAGMSAIRAERDYV 261 (292)
Q Consensus 187 ~l~~~~r~~~~i~l~~p~~-~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~di~~l~~~a~~~a~~~~~~~i 261 (292)
.+.+ ||...+.+|+++. ++...++.... .. .+.++..++..+.|+ +.+++.++++.|...+ ...
T Consensus 184 ~l~~--rf~~~i~~p~l~~r~~i~~i~~~~~---~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~ 252 (272)
T 1d2n_A 184 EMLN--AFSTTIHVPNIATGEQLLEALELLG---NF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEY 252 (272)
T ss_dssp TCTT--TSSEEEECCCEEEHHHHHHHHHHHT---CS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGG
T ss_pred hhhc--ccceEEcCCCccHHHHHHHHHHhcC---CC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHH
Confidence 5555 8888888877765 44444444321 11 233467788888887 5666666666554322 234
Q ss_pred cHHHHHHHHHH
Q 022768 262 IHEDFMKAVRK 272 (292)
Q Consensus 262 ~~~~~~~a~~~ 272 (292)
..+++.+++..
T Consensus 253 ~~~~~~~~l~~ 263 (272)
T 1d2n_A 253 RVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-19 Score=155.46 Aligned_cols=160 Identities=8% Similarity=0.084 Sum_probs=118.5
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEEEEeccchh
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSAII 103 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~~~~~~~~~ 103 (292)
|.|++++.+.+..++...+.. ..+.+++|+||||||||++++.+++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 889999999999888765332 567889999999999999999999988 3457888876643
Q ss_pred ccc----------------cChHHHHHHHHHHHh--hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC
Q 022768 104 DKY----------------IGESARLIREMFGYA--RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (292)
Q Consensus 104 ~~~----------------~~~~~~~~~~~~~~~--~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 165 (292)
+.. .+.....+...|... ....+.|++|||+|.+. .+..|..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 321 122345566677664 33457899999999993 2356666666433
Q ss_pred CCCCCCeEEEEEeCCCCC----CChhhcCCCCcc-eEEEccCCCHHHHHHHHHHHHcCc
Q 022768 166 FDQLGKVKMIMATNRPDV----LDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGI 219 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~~~----l~~~l~~~~r~~-~~i~l~~p~~~~r~~i~~~~~~~~ 219 (292)
....++.+|+++|..+. +++++++ ||. ..+.|++++.++..+|++.++...
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 34468999999998764 3445566 776 578999999999999999888753
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=2e-19 Score=166.96 Aligned_cols=225 Identities=22% Similarity=0.288 Sum_probs=142.2
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc------
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------ 104 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~------ 104 (292)
..+++|++++++.+.+++..... .... ++.+++|+||||+|||+++++++..++.++..+++.....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~------~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKL------TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHH------SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHh------cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 45699999999999887654210 1112 5778999999999999999999999999999998876543
Q ss_pred ---cccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh--CC--------CCCCC
Q 022768 105 ---KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GF--------DQLGK 171 (292)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~--------~~~~~ 171 (292)
.+.+.....+...|..+.... +++||||+|.+.... ....+..|+++++... .+ ....+
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp -----------CHHHHHHTTCSSS-EEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHHHHhccCchHHHHHHHHhhccC-CEEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 233333344445555554444 499999999995332 1113344444443211 00 11146
Q ss_pred eEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcC-----ccC---CCCCCHHHHHH----HcCCCCH
Q 022768 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-----IAK---HGEIDYEAVVK----LAEGFNG 239 (292)
Q Consensus 172 ~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~-----~~~---~~~~~~~~l~~----~~~g~~~ 239 (292)
+++|+|+|.++.+++++++ || ..+.++.|+.+++..|++.++.. ... .-.++.+.+.. .+...+.
T Consensus 225 v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp CEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred eEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 8999999999999999999 99 57899999999999999987621 111 11223333333 2322356
Q ss_pred HHHHHHHHHHHHHHHHh------cCCcccHHHHHHHHHHH
Q 022768 240 ADLRNVCTEAGMSAIRA------ERDYVIHEDFMKAVRKL 273 (292)
Q Consensus 240 ~di~~l~~~a~~~a~~~------~~~~i~~~~~~~a~~~~ 273 (292)
++++..+..+...+..+ ....|+.+++.+++..-
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 67766666655555443 23368999998887543
No 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=3.3e-18 Score=150.89 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=137.3
Q ss_pred hcccCCCCCccccccccHHHHHHHHHHh-hcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc------
Q 022768 21 MLHEDPGNVSYSAVGGLSDQIRELRESI-ELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (292)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~------ 93 (292)
+..+.++|.+|++++|++++++.+...+ .. ....+++|+||+|+||||+++.+++.+..+
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 3456789999999999999999998876 32 223349999999999999999999965211
Q ss_pred -----------------------EEEEeccchhccccChHHHHHHHHHHHhh--------------hCCCEEEEEccccc
Q 022768 94 -----------------------FLKVVSSAIIDKYIGESARLIREMFGYAR--------------DHQPCIIFMDEIDA 136 (292)
Q Consensus 94 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~il~lDe~d~ 136 (292)
++.++..... ... ...++..+.... ...|.+++|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG---NND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC-------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC---Ccc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 1222211110 000 012233333221 23577999999999
Q ss_pred ccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHH
Q 022768 137 IGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (292)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~ 216 (292)
+ +...+..+...++... .++.+|++++.++.+.+.+++ |+ ..+.|++|+.++..++++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKYS-----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHST-----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 7 6777788888777632 468899999999999999998 77 889999999999999999887
Q ss_pred cCccCC-C-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 022768 217 AGIAKH-G-EIDYEAVVKLAEGFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 217 ~~~~~~-~-~~~~~~l~~~~~g~~~~di~~l~~~a~~~a 253 (292)
...... . +..+..++..+.| +.+++..+++.+...+
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 643332 2 3346778888877 7778888887766543
No 60
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=5.8e-19 Score=141.59 Aligned_cols=163 Identities=24% Similarity=0.384 Sum_probs=117.1
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCc
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN 93 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~ 93 (292)
..+++.+|++++|.++.++++.+.+.. ..+.+++|+||+|+|||++++.+++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 345567899999999999999888754 335689999999999999999999986 677
Q ss_pred EEEEeccchhc--cccChHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC
Q 022768 94 FLKVVSSAIID--KYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG 170 (292)
Q Consensus 94 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 170 (292)
++.+++..+.. ...+.....+..++..+.. ..+.+|+|||+|.+....... ........+..++.. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~-------~ 150 (195)
T 1jbk_A 81 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALAR-------G 150 (195)
T ss_dssp EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHT-------T
T ss_pred EEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhcc-------C
Confidence 88888776652 3334455566666665543 457899999999995432111 111223344444432 4
Q ss_pred CeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHH
Q 022768 171 KVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEIL 212 (292)
Q Consensus 171 ~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~ 212 (292)
++.+|++++.+. .+++.+.+ ||. .+.+++|+.+++.+++
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 677888888765 68899998 885 6899999999998775
No 61
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=1e-17 Score=148.36 Aligned_cols=236 Identities=21% Similarity=0.258 Sum_probs=150.8
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHh-cC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc-ccCh
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLR-VG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGE 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~-~~-~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~-~~~~ 109 (292)
.++|++++++.+...+...+........ .+ ..++.+++|+||||||||++|+++|+.++.+++.+++..+... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999999988533211110000 01 1256789999999999999999999999999999999887643 4444
Q ss_pred H-HHHHHHHHHHh----hhCCCEEEEEcccccccCCcCCCCCcch---HHHHHHHHHHHHHhh----------------C
Q 022768 110 S-ARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSAD---REIQRTLMELLNQLD----------------G 165 (292)
Q Consensus 110 ~-~~~~~~~~~~~----~~~~~~il~lDe~d~l~~~~~~~~~~~~---~~~~~~l~~~l~~~~----------------~ 165 (292)
. ...+..++..+ ....+++|||||+|.+...+.......+ ...+..|+.+++... -
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 3 44455666554 2334689999999999765443322222 236666777666110 0
Q ss_pred CCCCCCeEEEEEeCCC----------CC-----------------------------------CChhhcCCCCcceEEEc
Q 022768 166 FDQLGKVKMIMATNRP----------DV-----------------------------------LDPALLRPGRLDRKIEI 200 (292)
Q Consensus 166 ~~~~~~~~vi~t~~~~----------~~-----------------------------------l~~~l~~~~r~~~~i~l 200 (292)
.-...++.+|++++.. .. +.+.+.+ ||+..+.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1122355566666532 11 5777887 99999999
Q ss_pred cCCCHHHHHHHHHH----HHc-------CccCCCCCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhcCC-----
Q 022768 201 PLPNEQSRMEILKI----HAA-------GIAKHGEID---YEAVVK--LAEGFNGADLRNVCTEAGMSAIRAERD----- 259 (292)
Q Consensus 201 ~~p~~~~r~~i~~~----~~~-------~~~~~~~~~---~~~l~~--~~~g~~~~di~~l~~~a~~~a~~~~~~----- 259 (292)
.+|+.+++.+|+.. +.. .....-.++ .+.|+. ....++.++++.+++.+...+..+...
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999998875 221 111111223 334443 334557789999999999888776422
Q ss_pred --cccHHHHHHHH
Q 022768 260 --YVIHEDFMKAV 270 (292)
Q Consensus 260 --~i~~~~~~~a~ 270 (292)
.|+.+++.+.+
T Consensus 334 ~~~I~~~~v~~~~ 346 (363)
T 3hws_A 334 KVVIDESVIDGQS 346 (363)
T ss_dssp EEECHHHHTTCCS
T ss_pred eeEEcHHHHhCcC
Confidence 46666665543
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=1.3e-17 Score=161.26 Aligned_cols=224 Identities=22% Similarity=0.292 Sum_probs=159.8
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcEE
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFL 95 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~~ 95 (292)
..+-+|++++|+++.++++.+.+.. ....+++|+||||+|||++++.++..+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 3456889999999999999888754 346789999999999999999999987 55667
Q ss_pred EEeccchh--ccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 96 KVVSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
.++...+. ..+.+.....++.++..+....+++|||||+|.+.+..... ....... .++ ...-..+.+.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~----~~L---~~~l~~~~~~ 317 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAA----NLI---KPLLSSGKIR 317 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHH----HHH---SSCSSSCCCE
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHH----HHH---HHHHhCCCeE
Confidence 77666655 34667788889999998888778999999999997543221 1122222 222 2223346788
Q ss_pred EEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccC--CCCCC---HHHHHHHcC-----CCC
Q 022768 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK--HGEID---YEAVVKLAE-----GFN 238 (292)
Q Consensus 174 vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~--~~~~~---~~~l~~~~~-----g~~ 238 (292)
+|++++.++ .+++++.+ ||. .+.++.|+.+++.++++.+...+.. .-.++ +..++..+. .+.
T Consensus 318 ~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l 394 (758)
T 1r6b_X 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_dssp EEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred EEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence 899988642 46788888 895 7999999999999999977653211 11122 333444433 346
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCcccHHHHHHHHHHHh
Q 022768 239 GADLRNVCTEAGMSAIR----AERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~----~~~~~i~~~~~~~a~~~~~ 274 (292)
+..+..++++|...+.. .....|+.+++.+++..+.
T Consensus 395 p~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp THHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 77889999998876655 2345799999999998865
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=4.2e-18 Score=149.56 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=142.6
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----cE
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NF 94 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~-----~~ 94 (292)
.+....++|.+|++++|++++++.|...+..- . ..+++|+||+|+||||+++++++.+.. .+
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g------------~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEG------------K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC------------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 34556789999999999999999998887641 1 224999999999999999999998743 25
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhh------hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYAR------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
..++.....+ ...++..+.... ...+.+++|||+|.+ ....+..|..+++..
T Consensus 80 ~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 137 (340)
T 1sxj_C 80 LELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY----- 137 (340)
T ss_dssp EEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-----
T ss_pred EEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC-----
Confidence 5555443211 122222222211 123689999999998 566677777777653
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 169 ~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
...+.+|+++|.+..+.+.+++ |+ ..+.|++++.++..+.+...+...... .+.....++..+.| ..+.+..+++
T Consensus 138 ~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2467788889999999999999 77 578999999999998888877432221 12234556666766 5555555554
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHH
Q 022768 248 EAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 248 ~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
.+...+...+...|+.+++.+++.
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHhcCCcccccccHHHHHHHhC
Confidence 443222111122577777765544
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=3.5e-18 Score=156.15 Aligned_cols=210 Identities=24% Similarity=0.314 Sum_probs=141.2
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCc
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN 93 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~ 93 (292)
....+.++++++|.++.++++...+.. ....++||+||||+|||++++.+++.+ +.+
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 356677899999999999999998765 235689999999999999999999997 677
Q ss_pred EEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeE
Q 022768 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (292)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 173 (292)
++.+++. ..+.|.....++.++..+....++||||| . ....+..|...+ ..+.+.
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----------~~~a~~~L~~~L-------~~g~v~ 293 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----------AIDASNILKPSL-------ARGELQ 293 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCT-------TSSSCE
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----------chhHHHHHHHhh-------cCCCEE
Confidence 8888776 44556666677888888888888999999 1 122222222222 235788
Q ss_pred EEEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC--CCCC---HHHHHHHcCC-----CC
Q 022768 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEID---YEAVVKLAEG-----FN 238 (292)
Q Consensus 174 vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~--~~~~---~~~l~~~~~g-----~~ 238 (292)
+|+++|..+ .+++++++ ||. .+.|+.|+.+++..|++.+...+... ..++ +..++..+.+ +.
T Consensus 294 vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred EEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence 999999876 68899998 995 69999999999999999887653222 2222 3334444433 34
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHh
Q 022768 239 GADLRNVCTEAGMSAIRAERD-YVIHEDFMKAVRKLN 274 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~~~~~-~i~~~~~~~a~~~~~ 274 (292)
+..+..+++.|...+..+... ......+.+.+..+.
T Consensus 371 p~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 371 PDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 668889998888766655432 233344444444443
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.76 E-value=1.4e-17 Score=144.20 Aligned_cols=206 Identities=21% Similarity=0.334 Sum_probs=140.0
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccC
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG 108 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~ 108 (292)
.+++|++.+++.+...+...... ......+..+++|+||||||||++|+++++.+ +.+++.+++..+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~- 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA- 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH-
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc-
Confidence 45789999999999988653110 00011234579999999999999999999988 45688888876543210
Q ss_pred hHHHHH------------HHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CCC
Q 022768 109 ESARLI------------REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLG 170 (292)
Q Consensus 109 ~~~~~~------------~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~ 170 (292)
....+ ..+........+++|+|||+|.+ ....+..|..+++...... ...
T Consensus 92 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 92 -VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp -HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred -HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 01100 12223333455689999999999 7788888888887643111 113
Q ss_pred CeEEEEEeCC--------------------------CCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc----
Q 022768 171 KVKMIMATNR--------------------------PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA---- 220 (292)
Q Consensus 171 ~~~vi~t~~~--------------------------~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~---- 220 (292)
++++|+|+|. ...+++.+.+ ||+..+.+++|+.+++..|++.++....
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6779999998 3357778887 9999999999999999999998775421
Q ss_pred ---CCCCCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh
Q 022768 221 ---KHGEID---YEAVVKLAE--GFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 221 ---~~~~~~---~~~l~~~~~--g~~~~di~~l~~~a~~~a~~~ 256 (292)
....++ +..|+...- ..+.++++.+++.+...+..+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 112233 344444433 457888999998887766543
No 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.75 E-value=2.1e-17 Score=147.09 Aligned_cols=236 Identities=17% Similarity=0.219 Sum_probs=141.5
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHH-----------------hcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFL-----------------RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~-----------------~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
.++|++++++.|...+...+....... .-...+..+++|+||||||||++|+++++.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988743222211100 011234678999999999999999999999999999
Q ss_pred EEeccchhc-cccChH-HHHHHHHHHHhh----hCCCEEEEEcccccccCCcCCCCCc---chHHHHHHHHHHHHHhh-C
Q 022768 96 KVVSSAIID-KYIGES-ARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTS---ADREIQRTLMELLNQLD-G 165 (292)
Q Consensus 96 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~~~~~il~lDe~d~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~-~ 165 (292)
.+++..+.. .+.+.. ...+...+.... ...+++|+|||+|.+...+...... .....+..|+.+++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999887642 222322 233444444322 2356899999999996542221111 11236677777776321 0
Q ss_pred C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCChhhc
Q 022768 166 F---------------DQLGKVKMIMATNR-----------------------------------------PDVLDPALL 189 (292)
Q Consensus 166 ~---------------~~~~~~~vi~t~~~-----------------------------------------~~~l~~~l~ 189 (292)
+ ....++.+|+++|. ...+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 01135567777762 012456777
Q ss_pred CCCCcceEEEccCCCHHHHHHHHHH----HHc-------CccCCCCCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHH
Q 022768 190 RPGRLDRKIEIPLPNEQSRMEILKI----HAA-------GIAKHGEID---YEAVVKLAE--GFNGADLRNVCTEAGMSA 253 (292)
Q Consensus 190 ~~~r~~~~i~l~~p~~~~r~~i~~~----~~~-------~~~~~~~~~---~~~l~~~~~--g~~~~di~~l~~~a~~~a 253 (292)
+ |++..+.|++++.++...++.. +.. .....-.++ +..++.... ..+.+.++.+++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 7 8888899999999999998862 111 011111123 334444322 247889999999998877
Q ss_pred HHhcCC------cccHHHHHHHH
Q 022768 254 IRAERD------YVIHEDFMKAV 270 (292)
Q Consensus 254 ~~~~~~------~i~~~~~~~a~ 270 (292)
+.+... .|+.+++.++.
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSS
T ss_pred HhhccCCCCCEEEEeHHHhcCCC
Confidence 765332 58888887644
No 67
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=3.8e-17 Score=146.52 Aligned_cols=242 Identities=23% Similarity=0.283 Sum_probs=155.2
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhc-cccCh
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE 109 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~-~~~~~ 109 (292)
+.|+|++++++.|..++..++.....+..++. .++.+++|+||||+|||++++++|+.++.+++.+++..+.. .+.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999999998766444333332222 24678999999999999999999999999999999877765 35553
Q ss_pred -HHHHHHHHHHHh-------------------------------------------------------------------
Q 022768 110 -SARLIREMFGYA------------------------------------------------------------------- 121 (292)
Q Consensus 110 -~~~~~~~~~~~~------------------------------------------------------------------- 121 (292)
....++.+|..+
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 333333332211
Q ss_pred ------------------------------------------------------------------------hhCCCEEE
Q 022768 122 ------------------------------------------------------------------------RDHQPCII 129 (292)
Q Consensus 122 ------------------------------------------------------------------------~~~~~~il 129 (292)
+....+++
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 00123589
Q ss_pred EEcccccccCCcCCCCCc-chHHHHHHHHHHHHHhhC-----CCCCCCeEEEEEe----CCCCCCChhhcCCCCcceEEE
Q 022768 130 FMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQLDG-----FDQLGKVKMIMAT----NRPDVLDPALLRPGRLDRKIE 199 (292)
Q Consensus 130 ~lDe~d~l~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-----~~~~~~~~vi~t~----~~~~~l~~~l~~~~r~~~~i~ 199 (292)
++||+|.+..+......+ .....|.+|+.+++.-.. .....++++|+|+ +.+..+.+.+++ ||...+.
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEE
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeee
Confidence 999999997654322222 223467788887763210 0234578889887 234446688998 9999999
Q ss_pred ccCCCHHHHHHHHH--------HH---HcCccCC---CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHhcC
Q 022768 200 IPLPNEQSRMEILK--------IH---AAGIAKH---GEIDYEAVVK-------LAEGFNGADLRNVCTEAGMSAIRAER 258 (292)
Q Consensus 200 l~~p~~~~r~~i~~--------~~---~~~~~~~---~~~~~~~l~~-------~~~g~~~~di~~l~~~a~~~a~~~~~ 258 (292)
|+.++.++..+|+. .+ +...... .+-.+..++. .+.+...|.++.++..+...+..+..
T Consensus 333 l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~ 412 (444)
T 1g41_A 333 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS 412 (444)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcc
Confidence 99999999999883 11 1111111 1112334443 23556678888777777766554421
Q ss_pred ------CcccHHHHHHHHHHHhh
Q 022768 259 ------DYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 259 ------~~i~~~~~~~a~~~~~~ 275 (292)
-.|+.+++.+.+.....
T Consensus 413 ~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 413 DMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp GCTTCEEEECHHHHHHHHTTTTT
T ss_pred ccCCCeEEEeHHHHHHhcCcccc
Confidence 25888888877655443
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=1.7e-17 Score=160.21 Aligned_cols=192 Identities=27% Similarity=0.344 Sum_probs=136.3
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcE
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANF 94 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~ 94 (292)
...+-++++++|.++.++++...+.. ....++||+||||||||++|+.+|+.+ +.++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 45667899999999999999998765 345679999999999999999999997 7778
Q ss_pred EEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 95 LKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
+.+++ ...+.|+.+..++.++..+....++||||| . ....+..|...+ ..+.+.+
T Consensus 240 ~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~-----------~~~~~~~L~~~l-------~~~~v~~ 294 (758)
T 3pxi_A 240 MTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----------AIDASNILKPSL-------ARGELQC 294 (758)
T ss_dssp ECC-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCT-------TSSSCEE
T ss_pred EEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc----C-----------chhHHHHHHHHH-------hcCCEEE
Confidence 87776 344566777788889998888888999999 1 112222222222 2357889
Q ss_pred EEEeCCCC-----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCC--CCC---HHHHHHHc-----CCCCH
Q 022768 175 IMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EID---YEAVVKLA-----EGFNG 239 (292)
Q Consensus 175 i~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~--~~~---~~~l~~~~-----~g~~~ 239 (292)
|++||..+ .+++++++ || ..+.++.|+.+++.+|++.+...+.... .++ +..++..+ .++.+
T Consensus 295 I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 295 IGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 99999887 68999999 99 6799999999999999998776543222 233 23333332 35677
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 022768 240 ADLRNVCTEAGMSAIRAE 257 (292)
Q Consensus 240 ~di~~l~~~a~~~a~~~~ 257 (292)
.....++..|...+..+.
T Consensus 372 ~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 372 DKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhc
Confidence 889999999988776653
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=1.2e-16 Score=154.39 Aligned_cols=203 Identities=19% Similarity=0.279 Sum_probs=141.0
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccC
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG 108 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~ 108 (292)
..++|++++++.+...+....... .....+..++||+||||||||++|+++++.+ +.+++.+++..+......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 468999999999999887642110 0001222369999999999999999999987 678999999998876554
Q ss_pred hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCCCeEEEEEeCCCC
Q 022768 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLGKVKMIMATNRPD 182 (292)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~vi~t~~~~~ 182 (292)
. ...+........+++|||||+|.+ ....+..|+.+++..... ....++++|+|+|.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 4 112233344456689999999998 788888999988874311 1224678999999754
Q ss_pred C------------CChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-------cCCCCCCHHHHHHHc-----CCCC
Q 022768 183 V------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-------AKHGEIDYEAVVKLA-----EGFN 238 (292)
Q Consensus 183 ~------------l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-------~~~~~~~~~~l~~~~-----~g~~ 238 (292)
. +.+++.+ ||+..+.|++|+.+++..|++.++... ...-.++.+.+..+. ..++
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 4 6788888 998899999999999999998776532 112223444444432 2346
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022768 239 GADLRNVCTEAGMSAIR 255 (292)
Q Consensus 239 ~~di~~l~~~a~~~a~~ 255 (292)
.++++.+++.+...+..
T Consensus 710 ~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 710 ARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp TTTHHHHHHHHTHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 77888888876655443
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=6.7e-18 Score=134.82 Aligned_cols=156 Identities=24% Similarity=0.379 Sum_probs=111.1
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCc
Q 022768 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN 93 (292)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~ 93 (292)
..+.+.+|++++|.++.++.+.+.+.. ....+++|+||+|+|||++++.+++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 345566899999999999999888754 335689999999999999999999987 677
Q ss_pred EEEEeccchhc--cccChHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCC
Q 022768 94 FLKVVSSAIID--KYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG 170 (292)
Q Consensus 94 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 170 (292)
++.+++..+.. ...+.....+..++..+... .+.+|+|||+|.+...... ..........+..++.. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~~-------~ 151 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLAR-------G 151 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHHT-------T
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHhc-------C
Confidence 78877766542 23344455566666666554 6789999999999643321 11112233344444432 4
Q ss_pred CeEEEEEeCCCC-----CCChhhcCCCCcceEEEccCCC
Q 022768 171 KVKMIMATNRPD-----VLDPALLRPGRLDRKIEIPLPN 204 (292)
Q Consensus 171 ~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~l~~p~ 204 (292)
++.+|++++.+. .+++.+++ ||. .+.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 677899888764 58899998 896 58888885
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=1.3e-16 Score=155.94 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=136.5
Q ss_pred CCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCcE
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANF 94 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----------~~~~ 94 (292)
...+.+|++++|.++.++++...+.. ....+++|+||||+|||++++.+++.+ +.++
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 34567899999999999999988754 335679999999999999999999987 7788
Q ss_pred EEEeccchh--ccccChHHHHHHHHHHHhhhC-CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCC
Q 022768 95 LKVVSSAII--DKYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK 171 (292)
Q Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 171 (292)
+.+++..+. ..+.+.....+..++..+... .+.||||||+|.+.+.... .........+..++.. +.
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~~-------~~ 299 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALAR-------GE 299 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-------TC
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHhC-------CC
Confidence 999887775 345677788888888888765 6789999999999643321 1112333344444432 46
Q ss_pred eEEEEEeCCCC----CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCC--CCCC---HHHHHHHc-----CCC
Q 022768 172 VKMIMATNRPD----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEID---YEAVVKLA-----EGF 237 (292)
Q Consensus 172 ~~vi~t~~~~~----~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~--~~~~---~~~l~~~~-----~g~ 237 (292)
+.+|++++.++ .+++++.+ ||.. +.++.|+.+++.+|++.++...... ..+. +..++..+ ..+
T Consensus 300 i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~ 376 (854)
T 1qvr_A 300 LRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 376 (854)
T ss_dssp CCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSC
T ss_pred eEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhccccc
Confidence 77888888654 47889998 8964 9999999999999998766533111 1122 23333333 456
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 022768 238 NGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 238 ~~~di~~l~~~a~~~a~~~ 256 (292)
.+..+..++.+|...+..+
T Consensus 377 lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 377 LPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 7888999999988777655
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.72 E-value=6.7e-17 Score=136.94 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=124.3
Q ss_pred CccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEeccchhcc
Q 022768 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAIIDK 105 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~~~~~~~ 105 (292)
.+|++++|.+..++.+.+.+... ...+.+++|+||||||||++|+++++.+. .+++.+++..+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47899999999999988877653 23357899999999999999999999875 68999998876321
Q ss_pred ccChHHHHHHHHHH---------------HhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC----
Q 022768 106 YIGESARLIREMFG---------------YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF---- 166 (292)
Q Consensus 106 ~~~~~~~~~~~~~~---------------~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---- 166 (292)
.. . ..+|+ ......+++|+|||+|.+ ....+..|..+++...-.
T Consensus 72 ~~---~---~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LL---D---SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HH---H---HHHHCCC---------CCCCHHHHTTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC
T ss_pred HH---H---HHhcCCcccccccccccccchhhhcCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCC
Confidence 10 0 01111 011134579999999999 677788888888753200
Q ss_pred --CCCCCeEEEEEeCCC-------CCCChhhcCCCCcc-eEEEccCCCH--HHHHHHHHHHHcC----ccCC--CCCCHH
Q 022768 167 --DQLGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPNE--QSRMEILKIHAAG----IAKH--GEIDYE 228 (292)
Q Consensus 167 --~~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~-~~i~l~~p~~--~~r~~i~~~~~~~----~~~~--~~~~~~ 228 (292)
....++.+|+|+|.. ..+.+.+.+ ||. ..+.+|+++. ++...+++.++.. .... ..++.+
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 012357899999874 246778877 774 3556666543 4445555554432 1211 135555
Q ss_pred HHHHHc-CCC--CHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 022768 229 AVVKLA-EGF--NGADLRNVCTEAGMSAIRAERDYVIHEDF 266 (292)
Q Consensus 229 ~l~~~~-~g~--~~~di~~l~~~a~~~a~~~~~~~i~~~~~ 266 (292)
.+..+. ..+ +.+++..+++.+...+ ....|+.+|+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 555443 222 5566777777766544 3345555544
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.72 E-value=1.8e-17 Score=151.59 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=134.9
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccc-----hhc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-----IID 104 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~-----~~~ 104 (292)
..++|.+++++.+..++.. +.++||+||||+|||++|+++++.++. ++..+.+.. +.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 3578999999888877644 468999999999999999999998854 444444321 111
Q ss_pred cccChHHHHHHHHHHHh-hhC--CCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC-----CCCCCCeEEEE
Q 022768 105 KYIGESARLIREMFGYA-RDH--QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-----FDQLGKVKMIM 176 (292)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~--~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~vi~ 176 (292)
...+..... ...+... ... .++||||||++.+ ....+..|...++.... ....+..++|+
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ 154 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVA 154 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhh
Confidence 111110000 1111111 111 3579999999988 77888888888864320 01112234677
Q ss_pred EeCCCCC---CChhhcCCCCcceEEEccCCCH-HHHHHHHHHHHcCccC---------------------CCCCC---HH
Q 022768 177 ATNRPDV---LDPALLRPGRLDRKIEIPLPNE-QSRMEILKIHAAGIAK---------------------HGEID---YE 228 (292)
Q Consensus 177 t~~~~~~---l~~~l~~~~r~~~~i~l~~p~~-~~r~~i~~~~~~~~~~---------------------~~~~~---~~ 228 (292)
+||.... ..+++.+ ||...+.+++|+. +++..|++........ .-.++ .+
T Consensus 155 ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e 232 (500)
T 3nbx_X 155 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFE 232 (500)
T ss_dssp EESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHH
T ss_pred ccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHH
Confidence 7775322 3458888 9988999999987 6788888765421100 00111 12
Q ss_pred HHHHHc---------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 022768 229 AVVKLA---------EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 271 (292)
Q Consensus 229 ~l~~~~---------~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 271 (292)
.++... .|.|++.+..+++.|...|..+++..|+.+|+. ++.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 233322 477999999999999999999999999999987 443
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=3.5e-16 Score=151.18 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=138.6
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCC----CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhcc---
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGI----KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--- 105 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~--- 105 (292)
.++|++++++.+...+... ..|. .+..++||+||||+|||++|+++++.++.+++.+++.++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4789999998888877542 1122 234579999999999999999999999999999999887542
Q ss_pred --ccC----hHH-HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CCCCe
Q 022768 106 --YIG----ESA-RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGKV 172 (292)
Q Consensus 106 --~~~----~~~-~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~ 172 (292)
..| ... ..-..+........++||+|||+|.+ ....+..|..+++...... ...++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 111 111 11112334444566799999999998 7788888888887532100 11368
Q ss_pred EEEEEeCCCC-------------------------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCc-------c
Q 022768 173 KMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-------A 220 (292)
Q Consensus 173 ~vi~t~~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~-------~ 220 (292)
++|+|+|... .+.+++++ ||+..+.|++|+.+++..|++.++... .
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999743 46778887 998889999999999999999877532 1
Q ss_pred CCCCCC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Q 022768 221 KHGEID---YEAVVKLA--EGFNGADLRNVCTEAGMSAI 254 (292)
Q Consensus 221 ~~~~~~---~~~l~~~~--~g~~~~di~~l~~~a~~~a~ 254 (292)
..-.++ .+.++... .++..+++..+++.+...++
T Consensus 678 ~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 678 VSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp EEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred cEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 111223 33344332 24557788888877766443
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=2.5e-17 Score=154.27 Aligned_cols=226 Identities=18% Similarity=0.123 Sum_probs=145.6
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe----ccchhcccc
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV----SSAIIDKYI 107 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~----~~~~~~~~~ 107 (292)
..++|++++++.+...+..-. .+.. ....+....++||+||||||||++|+++++.++...+... +..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~-~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVL-EDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEET-TTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccc-cCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 357899998887755443210 0000 0011223348999999999999999999999876654422 111111111
Q ss_pred ChH-HHH---HHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhC--------CCCCCCeEEE
Q 022768 108 GES-ARL---IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--------FDQLGKVKMI 175 (292)
Q Consensus 108 ~~~-~~~---~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~vi 175 (292)
... ... ....+. ...+++++|||+|.+ ....+..|.+.++...- ...+.++.+|
T Consensus 373 ~~~~~g~~~~~~G~l~---~A~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALV---LADGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHH---HHSSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeE---ecCCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 000 000 000111 123479999999998 66778888888875321 0112468899
Q ss_pred EEeCCCC-------------CCChhhcCCCCcce-EEEccCCCHHHHHHHHHHHHcCcc---------------------
Q 022768 176 MATNRPD-------------VLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIA--------------------- 220 (292)
Q Consensus 176 ~t~~~~~-------------~l~~~l~~~~r~~~-~i~l~~p~~~~r~~i~~~~~~~~~--------------------- 220 (292)
+|+|... .+++++++ ||+. .+..+.|+.+ ...|.++.+....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999875 78899998 9965 4556777777 7777777665321
Q ss_pred -----CCCCCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 221 -----KHGEIDYEAVVKL--------------AEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 221 -----~~~~~~~~~l~~~--------------~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
.-.+...+.+... ..+.+++.+..+++.|...|..+++..|+.+|+.+|+.-+...
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1111223444444 2356899999999999999999999999999999999887753
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.67 E-value=6.1e-16 Score=145.59 Aligned_cols=222 Identities=22% Similarity=0.322 Sum_probs=146.2
Q ss_pred ccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcE---EEEec
Q 022768 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---LKVVS 99 (292)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~---~~~~~ 99 (292)
...+++..|++++|.+++++.+...+.. +.+++|+||||+||||+++++++.++... +.+..
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred cccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 3577899999999999999988887653 56899999999999999999999885432 11111
Q ss_pred cchhc--c---c--cChHHH-------------------------------------------------HHHHHHHH---
Q 022768 100 SAIID--K---Y--IGESAR-------------------------------------------------LIREMFGY--- 120 (292)
Q Consensus 100 ~~~~~--~---~--~~~~~~-------------------------------------------------~~~~~~~~--- 120 (292)
..... . + .+.... ....+|..
T Consensus 97 ~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~ 176 (604)
T 3k1j_A 97 NPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH 176 (604)
T ss_dssp CTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC
T ss_pred CcccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe
Confidence 11000 0 0 000000 01111110
Q ss_pred --------------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC--------------
Q 022768 121 --------------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-------------- 166 (292)
Q Consensus 121 --------------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------- 166 (292)
.....+++|||||++.+ +...+..|...++...-.
T Consensus 177 ~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 177 DPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp CCC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred chhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 11234579999999998 778888888888754211
Q ss_pred --CCCCCeEEEEEeCCC--CCCChhhcCCCCcc---eEEEccCC---CHHHHHHHHHHHHcCcc---CCCCCCHHH---H
Q 022768 167 --DQLGKVKMIMATNRP--DVLDPALLRPGRLD---RKIEIPLP---NEQSRMEILKIHAAGIA---KHGEIDYEA---V 230 (292)
Q Consensus 167 --~~~~~~~vi~t~~~~--~~l~~~l~~~~r~~---~~i~l~~p---~~~~r~~i~~~~~~~~~---~~~~~~~~~---l 230 (292)
....++.+|+++|.. +.+++++++ ||. ..+.|+.. +.+....+++.+..... ....++.+. +
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 111367899999975 578999998 875 45666432 34556666554443221 112333333 3
Q ss_pred HHHc---CCC------CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 022768 231 VKLA---EGF------NGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 272 (292)
Q Consensus 231 ~~~~---~g~------~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 272 (292)
.... .|. +.+++.++++.|..+|..++...|+.+|+.+|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3322 442 69999999999999999999999999999999965
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=2.6e-16 Score=135.83 Aligned_cols=206 Identities=22% Similarity=0.237 Sum_probs=125.8
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccC
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG 108 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~ 108 (292)
++++|....++++.+.+... .....+++|+|+||||||++|+++++.. +.+++.++|..+......
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35899999999998888764 2446789999999999999999999965 568999998876431110
Q ss_pred h---------HH---HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------CCCC
Q 022768 109 E---------SA---RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLG 170 (292)
Q Consensus 109 ~---------~~---~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~ 170 (292)
. .. ......+.. ..+++|||||++.+ ....+..|..+++..... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 0 00 000111222 23479999999999 667777788777753210 1123
Q ss_pred CeEEEEEeCCC-------CCCChhhcCCCCcc-eEEEccCCC--HHHHHHHHHHHHcCc----cC-CCCCCHHHHHHHcC
Q 022768 171 KVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGI----AK-HGEIDYEAVVKLAE 235 (292)
Q Consensus 171 ~~~vi~t~~~~-------~~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~i~~~~~~~~----~~-~~~~~~~~l~~~~~ 235 (292)
++.+|+++|.. ..+.+++.. |+. ..+.+|++. .++...++..++... .. ...++.+.+..+..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 58899999875 235566666 663 345566554 344455666555422 11 12345444444332
Q ss_pred C---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 022768 236 G---FNGADLRNVCTEAGMSAIRAERDYVIHEDFM 267 (292)
Q Consensus 236 g---~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~ 267 (292)
. .+.+++.++++.+...+ ....|+.+++.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 1 25566667777666543 33456655554
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=1.4e-14 Score=130.08 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=145.1
Q ss_pred CccccccccHHHHHHHHHHh-hcccCChHHHHhcCC-CCCceEEE--EcCCCChHHHHHHHHHHhc---------CCcEE
Q 022768 29 VSYSAVGGLSDQIRELRESI-ELPLMNPELFLRVGI-KPPKGVLL--YGPPGTGKTLLARAIASNI---------DANFL 95 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l-~~~~~~~~~~~~~~~-~~~~~vll--~G~~G~GKT~l~~~la~~l---------~~~~~ 95 (292)
...+.++|.++..+.|...+ ..... +. ..+..++| +||+|+|||++++.+++.+ +..++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 34478999999999999887 54211 00 23567899 9999999999999999876 34567
Q ss_pred EEeccchhcc--c--------------cCh-HHHHHHHHHHHhh-hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHH
Q 022768 96 KVVSSAIIDK--Y--------------IGE-SARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 157 (292)
Q Consensus 96 ~~~~~~~~~~--~--------------~~~-~~~~~~~~~~~~~-~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~ 157 (292)
.+++...... . .+. .......+..... ...+.+|+|||+|.+.... .........+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~ 165 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLL 165 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHH
Confidence 7775332110 0 010 1122222222222 2457899999999983210 00223333344
Q ss_pred HHHHHhhCCCCC--CCeEEEEEeCCCC---CCC---hhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCC---C
Q 022768 158 ELLNQLDGFDQL--GKVKMIMATNRPD---VLD---PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI---D 226 (292)
Q Consensus 158 ~~l~~~~~~~~~--~~~~vi~t~~~~~---~l~---~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~---~ 226 (292)
..+.... ... .++.+|++++.++ .+. +.+.+ ++...+.+++++.++..++++.++......... .
T Consensus 166 ~~~~~~~--~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~ 241 (412)
T 1w5s_A 166 RVHEEIP--SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRH 241 (412)
T ss_dssp THHHHSC--CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred HHHHhcc--cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHH
Confidence 4443321 112 5788888887554 233 45555 555569999999999999998776422211122 2
Q ss_pred HHHHHHHcC------CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 227 YEAVVKLAE------GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 227 ~~~l~~~~~------g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
...+...+. | +++.+..++..+...|..++...++.+++.+++....
T Consensus 242 ~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 242 LELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 456677777 7 8889999999998888877777899999988887653
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.62 E-value=6.6e-15 Score=128.84 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc-----------------------
Q 022768 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----------------------- 93 (292)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----------------------- 93 (292)
+++.++.+...+..- ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 466677777776541 345679999999999999999999988543
Q ss_pred -EEEEeccchhccccChHHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC
Q 022768 94 -FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (292)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (292)
+..++...- + .....+.++.++..+.. ..+.|++|||+|.+ ....+..|...+ + .+
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~l---E--ep 135 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTL---E--EP 135 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHH---T--SC
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHh---c--CC
Confidence 222222100 0 01123445566555542 34689999999999 555555555554 3 34
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 169 ~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
.+++++|++++.++.+.+.+++ |+ ..+.|++|+.++..++++... .. .+.....++..+.| +++.+..+++.
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 4678899999999999999999 77 679999999999999888765 11 12234556777776 77777666654
Q ss_pred H
Q 022768 249 A 249 (292)
Q Consensus 249 a 249 (292)
+
T Consensus 208 ~ 208 (334)
T 1a5t_A 208 D 208 (334)
T ss_dssp H
T ss_pred c
Confidence 4
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=2.9e-15 Score=146.38 Aligned_cols=209 Identities=20% Similarity=0.307 Sum_probs=138.9
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc-
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY- 106 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~- 106 (292)
+..++|++++++.+...+...... ... .-.+..+++|+||+|||||++|+++++.+ +.+++.+++..+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 356899999999998888653110 000 01223579999999999999999999998 7789999988765431
Q ss_pred ----cChHH-----HHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCC------CCCC
Q 022768 107 ----IGESA-----RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGK 171 (292)
Q Consensus 107 ----~~~~~-----~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~ 171 (292)
.+... .....+........+++|||||++.+ ....+..|..+++...... ...+
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccCC
Confidence 11100 00122333344455689999999998 7778888888877532111 1236
Q ss_pred eEEEEEeCCC--------------------------CCCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHcCcc-----
Q 022768 172 VKMIMATNRP--------------------------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA----- 220 (292)
Q Consensus 172 ~~vi~t~~~~--------------------------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~~~~----- 220 (292)
+++|+|+|.. ..+.+.+.. |++..+.+.+|+.++...|+..++....
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999962 235677777 8988888999999999999987775221
Q ss_pred --CCCCCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh
Q 022768 221 --KHGEID---YEAVVKLAE--GFNGADLRNVCTEAGMSAIRA 256 (292)
Q Consensus 221 --~~~~~~---~~~l~~~~~--g~~~~di~~l~~~a~~~a~~~ 256 (292)
....++ .+.|+...- .++.++++.+++.+...+..+
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred CCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111233 344444433 457889999988887766544
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=7.4e-14 Score=120.29 Aligned_cols=142 Identities=13% Similarity=0.200 Sum_probs=105.0
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCcEEEEeccchhccccCh
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------DANFLKVVSSAIIDKYIGE 109 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l------~~~~~~~~~~~~~~~~~~~ 109 (292)
|++++++.|...+..- . .+++||+||+|+|||++++.+++.+ ...++.++...- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6778888888887652 2 5689999999999999999999864 345666664320 12
Q ss_pred HHHHHHHHHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC
Q 022768 110 SARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (292)
Q Consensus 110 ~~~~~~~~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~ 185 (292)
..+.++.++..+.. ....|++|||+|.+ ....+..|...++ .+++.+.+|++|+.++.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LE-----ep~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALE-----EPPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHH-----SCCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHh-----CCCCCeEEEEEECChHhCh
Confidence 23345555555543 23579999999999 6666666666665 3446888888899999999
Q ss_pred hhhcCCCCcceEEEccCCCHHHHHHHHHHHH
Q 022768 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (292)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~ 216 (292)
+.+++ | .+.|++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 6 78999999999999888776
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.59 E-value=1.3e-15 Score=116.88 Aligned_cols=132 Identities=18% Similarity=0.248 Sum_probs=92.3
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHH
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAR 112 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (292)
+++|.++.++++.+.+... ...+.+++|+||||||||++|+++++... +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5789999999999988764 23456799999999999999999999888 88888887764332
Q ss_pred HHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC-CCC----Chh
Q 022768 113 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DVL----DPA 187 (292)
Q Consensus 113 ~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~-~~l----~~~ 187 (292)
....+..+ .+++|||||+|.+ ....+..+..+++... ..++.+|+++|.+ ..+ .+.
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 23344433 3479999999999 6777888888887642 2467788888753 332 233
Q ss_pred hcCCCCc-ceEEEccCC
Q 022768 188 LLRPGRL-DRKIEIPLP 203 (292)
Q Consensus 188 l~~~~r~-~~~i~l~~p 203 (292)
+.. |+ ...+.+|+.
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 443 43 345666653
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.58 E-value=5.2e-15 Score=113.75 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=82.7
Q ss_pred cccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccCh
Q 022768 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE 109 (292)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~ 109 (292)
+++|....++++.+.+... ...+.+++|+||||||||++|+++++.. +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999999888664 2456789999999999999999999987 67888 998876543
Q ss_pred HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
......+..+ .+++|||||+|.+ ....+..|..++.. ...++.+|+++|.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 1122333333 3479999999999 67778888777732 22356788888864
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.42 E-value=4.4e-13 Score=106.65 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=82.8
Q ss_pred cCCCCCccccccc----cHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEE
Q 022768 24 EDPGNVSYSAVGG----LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFL 95 (292)
Q Consensus 24 ~~~~~~~~~~l~g----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~ 95 (292)
..+.+.+|+++++ +.++++.+.+++.. +.+..+.+++|+||+|+||||+++++++.+ +..++
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~ 71 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY 71 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 4567788999886 34455555555543 233457889999999999999999999877 55666
Q ss_pred EEeccchhccccChHHHH-HHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEE
Q 022768 96 KVVSSAIIDKYIGESARL-IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (292)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v 174 (292)
.++..++........... ....... ...|.+|+|||++... .+......+..+++.... .+..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~i 136 (180)
T 3ec2_A 72 FFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKST 136 (180)
T ss_dssp EEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEE
T ss_pred EEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCE
Confidence 666655543221110000 0011111 1256899999997431 155666677777765431 24567
Q ss_pred EEEeCCCC
Q 022768 175 IMATNRPD 182 (292)
Q Consensus 175 i~t~~~~~ 182 (292)
|+|+|.+.
T Consensus 137 i~tsn~~~ 144 (180)
T 3ec2_A 137 IITTNYSL 144 (180)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 77887653
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.37 E-value=1.2e-10 Score=101.89 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=115.2
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh---
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII--- 103 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~--- 103 (292)
|+.....++|+++..+.|.+.+.. +..++|+||+|+|||++++.+++..+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 445567899999999999988753 25799999999999999999999875 6666654321
Q ss_pred ---c---------ccc-------------------------ChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCC
Q 022768 104 ---D---------KYI-------------------------GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT 146 (292)
Q Consensus 104 ---~---------~~~-------------------------~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~ 146 (292)
. ... ......+..+...+....|.+|+|||+|.+.... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~ 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----S 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----T
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----c
Confidence 0 000 0111112222222222237899999999983100 0
Q ss_pred cchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC---------CCChhhcCCCCcceEEEccCCCHHHHHHHHHHHHc
Q 022768 147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 147 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~---------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
.........+..+++.. .++.+|+|++... .....+.. |+...+.+++++.++..+++...+.
T Consensus 146 ~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~--~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLYG--RIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTTT--CCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCcccc--CccceeeCCCCCHHHHHHHHHHHHH
Confidence 01223444444444431 3677777765421 11122322 5556899999999999999987765
Q ss_pred CccCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q 022768 218 GIAKH-GEIDYEAVVKLAEGFNGADLRNVCT 247 (292)
Q Consensus 218 ~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~ 247 (292)
..... .......+...+.| .|.-+..++.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 32221 12234566777887 5656666554
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.35 E-value=7.3e-11 Score=105.52 Aligned_cols=220 Identities=15% Similarity=0.055 Sum_probs=131.5
Q ss_pred ccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHH-HHhcCCcEEEEeccc----hhccccC
Q 022768 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAI-ASNIDANFLKVVSSA----IIDKYIG 108 (292)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~l-a~~l~~~~~~~~~~~----~~~~~~~ 108 (292)
++|++++++.|.-.+..-... ....-++||.|+||+ ||++++++ ++.+....+...... +.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 788888887777766442100 112238999999999 99999999 776644333211110 1000000
Q ss_pred hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhh----CCCCCCCeEEEEEeCCCC--
Q 022768 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD----GFDQLGKVKMIMATNRPD-- 182 (292)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~vi~t~~~~~-- 182 (292)
.+...+ --+.......+++++||++.+ ....+..|.+.+++-. +..-+.++.||+|+|..+
T Consensus 286 ~tG~~~--~~G~l~LAdgGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~y 352 (506)
T 3f8t_A 286 DRGWAL--RAGAAVLADGGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQW 352 (506)
T ss_dssp SSSEEE--EECHHHHTTTSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--
T ss_pred CCCccc--CCCeeEEcCCCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccccc
Confidence 000000 000011123479999999998 8889999999988642 111124788999999864
Q ss_pred ---------CCChhhcCCCCcceEE-EccCCCHHHHH---------HHHHHH---HcCccCCCCCCH---HHHH------
Q 022768 183 ---------VLDPALLRPGRLDRKI-EIPLPNEQSRM---------EILKIH---AAGIAKHGEIDY---EAVV------ 231 (292)
Q Consensus 183 ---------~l~~~l~~~~r~~~~i-~l~~p~~~~r~---------~i~~~~---~~~~~~~~~~~~---~~l~------ 231 (292)
.+++++++ ||+..+ .+.+|+.+... +.++.+ .........++- +.+.
T Consensus 353 d~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~t 430 (506)
T 3f8t_A 353 PSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETR 430 (506)
T ss_dssp CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHH
Confidence 68889999 997655 44666543311 122211 110000111111 0111
Q ss_pred -H----------HcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhh
Q 022768 232 -K----------LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAK 277 (292)
Q Consensus 232 -~----------~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 277 (292)
. ..-|.|++.+..+++.|.+.|..+++..|+.+|+.+|+.-+...-
T Consensus 431 R~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 431 REEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred hcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 0 234679999999999999999999999999999999999888643
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.35 E-value=1.4e-11 Score=109.66 Aligned_cols=206 Identities=24% Similarity=0.286 Sum_probs=127.7
Q ss_pred cccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEeccchhcccc
Q 022768 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAIIDKYI 107 (292)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~~~~~~~~~ 107 (292)
+..++|.....+++.+.+... .....+++|+|++|+||+++++.+....+ .+++.++|..+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~- 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI- 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH-
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH-
Confidence 456788888877777776653 24456799999999999999999988764 689999998764321
Q ss_pred ChHHHHHHHHHHHh---------------hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCC------
Q 022768 108 GESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------ 166 (292)
Q Consensus 108 ~~~~~~~~~~~~~~---------------~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------ 166 (292)
.-..+|+.. .....++|||||++.+ +...+..|..+++...-.
T Consensus 204 -----~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 204 -----FEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp -----HHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCS
T ss_pred -----HHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 112333221 1133479999999999 888999999998864211
Q ss_pred CCCCCeEEEEEeCCC-------CCCChhhcCCCCc-ceEEEccCCCH--HHHHHHHHHHHcCc----cCC-CCCCHHHHH
Q 022768 167 DQLGKVKMIMATNRP-------DVLDPALLRPGRL-DRKIEIPLPNE--QSRMEILKIHAAGI----AKH-GEIDYEAVV 231 (292)
Q Consensus 167 ~~~~~~~vi~t~~~~-------~~l~~~l~~~~r~-~~~i~l~~p~~--~~r~~i~~~~~~~~----~~~-~~~~~~~l~ 231 (292)
....++.+|++||.. ....+.+.. |+ ...+.+|+... ++...++.+++... ... ..++.+.+.
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 011257799999863 223444443 33 23445554432 34444555554422 211 235556666
Q ss_pred HHcC-CC--CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 022768 232 KLAE-GF--NGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 269 (292)
Q Consensus 232 ~~~~-g~--~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a 269 (292)
.+.. .| |.++++++++.|...+ ....|+.+++...
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 5543 22 4456666666665443 4557888888654
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1.6e-10 Score=101.26 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=116.8
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchh---
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII--- 103 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~--- 103 (292)
|+.....++|.++..+.|.+ +.. ..++|+||+|+|||++++.+++..+..++.+++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 44466789999999999988 531 4799999999999999999999987777777765431
Q ss_pred --c--cccChH---------------------------------------HHHHHHHHHHhhhC--CCEEEEEccccccc
Q 022768 104 --D--KYIGES---------------------------------------ARLIREMFGYARDH--QPCIIFMDEIDAIG 138 (292)
Q Consensus 104 --~--~~~~~~---------------------------------------~~~~~~~~~~~~~~--~~~il~lDe~d~l~ 138 (292)
. ...... ...+..++...... .|.+|+|||+|.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 000000 01122233333222 37899999999983
Q ss_pred CCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC---------CChhhcCCCCcceEEEccCCCHHHHH
Q 022768 139 GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV---------LDPALLRPGRLDRKIEIPLPNEQSRM 209 (292)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~---------l~~~l~~~~r~~~~i~l~~p~~~~r~ 209 (292)
... .......+..+.+.. .++.+|+|++.... ....+.. |+...+.+++++.++..
T Consensus 151 ~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~--r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFG--RAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTT--CCCEEEEECCCCHHHHH
T ss_pred ccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcccc--CccceeecCCCCHHHHH
Confidence 210 111223333333321 36777777764321 1112222 55578899999999999
Q ss_pred HHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 022768 210 EILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTE 248 (292)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~ 248 (292)
+++...+.......+ +...+...+.| +|.-+..++..
T Consensus 216 ~~l~~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 999877643222222 24778888888 66667666554
No 89
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=83.99 Aligned_cols=76 Identities=42% Similarity=0.678 Sum_probs=71.2
Q ss_pred cCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 201 ~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
|.|+.++|.+||+.++.......+++++.|+..+.|||++||..+|++|...|+.++...|+.+||.+|+..+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999988877889999999999999999999999999999999999999999999999988653
No 90
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=85.39 Aligned_cols=77 Identities=40% Similarity=0.631 Sum_probs=72.4
Q ss_pred ccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhh
Q 022768 200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 276 (292)
Q Consensus 200 l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 276 (292)
-.+|+.++|.+||+.++.......+++++.|+..+.|||++||..+|++|...|+++....|+.+||.+|+..+.+.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 47899999999999999988877889999999999999999999999999999999988999999999999998764
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=2.3e-11 Score=93.60 Aligned_cols=100 Identities=18% Similarity=0.303 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~ 141 (292)
++..++|+||+|+||||++++++..+ +..+++++..++... .....+.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~---- 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL---- 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc----
Confidence 46789999999999999999999987 566778877665433 11234689999999886
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC-CCCCCC--hhhcCCCCcc
Q 022768 142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN-RPDVLD--PALLRPGRLD 195 (292)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~-~~~~l~--~~l~~~~r~~ 195 (292)
....+..+..+++.... .+..++|+|++ .+..+. +++.+ |+.
T Consensus 96 -------~~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~ 140 (149)
T 2kjq_A 96 -------GNEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMA 140 (149)
T ss_dssp -------CSHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGG
T ss_pred -------ChHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHh
Confidence 32236677777766532 12333555666 444332 78887 553
No 92
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.20 E-value=4.3e-10 Score=99.36 Aligned_cols=189 Identities=23% Similarity=0.278 Sum_probs=117.0
Q ss_pred ccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCc--EEEEeccchhccccCh
Q 022768 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGE 109 (292)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~--~~~~~~~~~~~~~~~~ 109 (292)
..++|.....+++...+... ......++++|++|+||+.+++.+....+.. ++.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~-- 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELA-- 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTH--
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHH--
Confidence 46788888887777766543 1335579999999999999999999877543 99999987643321
Q ss_pred HHHHHHHHHHH---------------hhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC------
Q 022768 110 SARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ------ 168 (292)
Q Consensus 110 ~~~~~~~~~~~---------------~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------ 168 (292)
-..+|+. ......++|||||++.+ +...|..|..+++.....+-
T Consensus 196 ----~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 196 ----ESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp ----HHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBE
T ss_pred ----HHHhcCccccccCCcccccCChHhhcCCCeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcce
Confidence 1122221 11234479999999999 88999999999986431111
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCCcc-eEEEccCCCH--HHHHHHHHHHHcCc----cCC-CCCCHHHHHHH
Q 022768 169 LGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPNE--QSRMEILKIHAAGI----AKH-GEIDYEAVVKL 233 (292)
Q Consensus 169 ~~~~~vi~t~~~~-------~~l~~~l~~~~r~~-~~i~l~~p~~--~~r~~i~~~~~~~~----~~~-~~~~~~~l~~~ 233 (292)
.-++.+|++||.. ....+.+.. |+. ..+.+|+... ++...++.+++... ... ..++.+.+..+
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 1156788888853 123334444 442 2456666544 45555666555432 111 34566666666
Q ss_pred cCCCCHHHHH---HHHHHHH
Q 022768 234 AEGFNGADLR---NVCTEAG 250 (292)
Q Consensus 234 ~~g~~~~di~---~l~~~a~ 250 (292)
...-.||+++ ++++.|.
T Consensus 339 ~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHH
Confidence 5532244555 5555544
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=1.1e-10 Score=123.56 Aligned_cols=139 Identities=19% Similarity=0.311 Sum_probs=93.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCcEEEEeccchhccccChHHHHHHHHHHHhh---------------hCCCEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAIIDKYIGESARLIREMFGYAR---------------DHQPCII 129 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~il 129 (292)
++++|++||||||||++|+.++... +..+..+++....+ ...+...+.... ..++.|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 6799999999999999995555544 56667777655432 122223332210 1234799
Q ss_pred EEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCC-------CCeEEEEEeCCCC-----CCChhhcCCCCcceE
Q 022768 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL-------GKVKMIMATNRPD-----VLDPALLRPGRLDRK 197 (292)
Q Consensus 130 ~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~ 197 (292)
||||+|.....+. +.+...+.|.++++........ .++.+|+|+|++. .+++++.+ || ..
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 9999987432221 1334556666666532111111 2588999999984 79999998 88 78
Q ss_pred EEccCCCHHHHHHHHHHHHcC
Q 022768 198 IEIPLPNEQSRMEILKIHAAG 218 (292)
Q Consensus 198 i~l~~p~~~~r~~i~~~~~~~ 218 (292)
+.++.|+.+++..|+..++..
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987754
No 94
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.15 E-value=6.4e-11 Score=120.69 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=100.6
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccCC----------hHHHHh---------------c---CCCCCceEEEEcCCCC
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLMN----------PELFLR---------------V---GIKPPKGVLLYGPPGT 77 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~----------~~~~~~---------------~---~~~~~~~vll~G~~G~ 77 (292)
.+.++|+++.|.+++++.+.+.+.+++.. ...+.. + |++.++.++++|||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999887722 122333 1 2456777999999999
Q ss_pred hHHHHHHHHHHhc---CCcEEEEeccchh------------ccccCh----HHHHHHHHHHHhhhCCCEEEEEccccccc
Q 022768 78 GKTLLARAIASNI---DANFLKVVSSAII------------DKYIGE----SARLIREMFGYARDHQPCIIFMDEIDAIG 138 (292)
Q Consensus 78 GKT~l~~~la~~l---~~~~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~il~lDe~d~l~ 138 (292)
|||++|++++.+. +.+.++++..+.. +.+.++ .++.+..++..++...|+++++|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999866 5667777766533 334445 78889999998999999999999999998
Q ss_pred CCcC---CCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeC
Q 022768 139 GRRF---SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (292)
Q Consensus 139 ~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~ 179 (292)
+.+. +.......-..+.+.+++..+.......+++||+|-+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEecc
Confidence 8732 2211112233344666666665444445777775443
No 95
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.12 E-value=2.9e-10 Score=79.10 Aligned_cols=75 Identities=40% Similarity=0.636 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 204 NEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 204 ~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
|.++|.+||+.++.+.....+++++.|+..+.||||.||..+|++|...|.++....|+.+||.+|++.+.....
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcc
Confidence 567899999999998888889999999999999999999999999999999999999999999999999987543
No 96
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.11 E-value=1.5e-10 Score=79.70 Aligned_cols=76 Identities=26% Similarity=0.459 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhh
Q 022768 203 PNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKK 278 (292)
Q Consensus 203 p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 278 (292)
.+.++|.+||+.++.......+++++.++..+.|||+.||..+|++|...|..+....|+.+|+..|+..+.+..+
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 3678999999999998887788999999999999999999999999999999998889999999999999998765
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=1.5e-10 Score=93.58 Aligned_cols=100 Identities=25% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCccccccccHH----HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 27 GNVSYSAVGGLSD----QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 27 ~~~~~~~l~g~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
.+.+|+++++... +++.+..++..... ...+.+++|+||+|+|||++++++++.+ +.+++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 4678999887553 34445555443200 0122789999999999999999999987 567777777
Q ss_pred cchhccccChH-HHHHHHHHHHhhhCCCEEEEEcccccc
Q 022768 100 SAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAI 137 (292)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~lDe~d~l 137 (292)
..+........ ...+...+..... +.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 65543221100 0001122222232 359999999765
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.06 E-value=8.5e-09 Score=109.53 Aligned_cols=186 Identities=14% Similarity=0.193 Sum_probs=124.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~ 145 (292)
..+.++.||+|||||++++.+|+.+|.+++.++|.+..+. ..+..+|..+.... +++++||++++
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 5678999999999999999999999999999999876442 23345555444443 79999999998
Q ss_pred CcchHHHHHHHHHHHHHhh---------------CCCCCCCeEEEEEeCC----CCCCChhhcCCCCcceEEEccCCCHH
Q 022768 146 TSADREIQRTLMELLNQLD---------------GFDQLGKVKMIMATNR----PDVLDPALLRPGRLDRKIEIPLPNEQ 206 (292)
Q Consensus 146 ~~~~~~~~~~l~~~l~~~~---------------~~~~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (292)
..+....+...+..+. .+.-++.+.+++|.|+ ..++++.+++ || ..+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 6666666643333210 1123446788999984 4579999998 88 78999999999
Q ss_pred HHHHHHHHHHcCccCCCCCC------HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 022768 207 SRMEILKIHAAGIAKHGEID------YEAVVKLAE-----GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 207 ~r~~i~~~~~~~~~~~~~~~------~~~l~~~~~-----g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 275 (292)
...+++-... +........ +..+..... .+..+.++.++..|...-... .-....+.+|+.+++.
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~---~~e~~~l~~al~~~~l 859 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF---GEGEKTVVESLKRVIL 859 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHTG
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC---CcHHHHHHHHHHHhcc
Confidence 8888754322 111111110 011111111 257889999888876554333 2344567788887775
Q ss_pred h
Q 022768 276 A 276 (292)
Q Consensus 276 ~ 276 (292)
.
T Consensus 860 p 860 (2695)
T 4akg_A 860 P 860 (2695)
T ss_dssp G
T ss_pred c
Confidence 3
No 99
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.95 E-value=7.9e-09 Score=90.39 Aligned_cols=182 Identities=11% Similarity=0.020 Sum_probs=112.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC---C-cEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEccccc-ccC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID---A-NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDA-IGG 139 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~-l~~ 139 (292)
..+.++|+||+|.||++.++.+++.+. . +...+... +. .+....+..+..........+++|||+|. +
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl-- 89 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGP-- 89 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCC--
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCC--
Confidence 356899999999999999999988662 1 22222111 11 12233332333333345568999999988 7
Q ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC------CCCChhhcCCCCcceEEEccCCCHHHHHHHHH
Q 022768 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~i~~ 213 (292)
....+..|...++ .+++.+++|++++.. ..+.+.+.+ |+ ..+.+.+++.++....++
T Consensus 90 ---------~~~~~~aLl~~le-----~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 90 ---------NAAINEQLLTLTG-----LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp ---------CTTHHHHHHHHHT-----TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHH
T ss_pred ---------ChHHHHHHHHHHh-----cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHH
Confidence 3444555555554 233566666666543 345667777 66 678999999999988888
Q ss_pred HHHcCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 214 IHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 214 ~~~~~~~~~-~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
..+...... .+.....++..+.| +.+++.+.++....+ .+...||.+++.+.+....
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhhhh
Confidence 887654332 11223445555555 555555555555433 2345799999888776554
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.94 E-value=1.7e-09 Score=86.50 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~ 142 (292)
++..++++|+||||||||++|.++++.+...++.+.... ..+ .+... ....+++|||++.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l--~~~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPL--TDTKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGG--TTCSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhccc--CCCCEEEEECCCchh----
Confidence 455568999999999999999999999865443221100 000 00111 123599999996320
Q ss_pred CCCCcchHHHHHHHHHHHHHh----hCCCCC----CCeEEEEEeCCC---CCCChhhcCCCCcceEEEccCC
Q 022768 143 SEGTSADREIQRTLMELLNQL----DGFDQL----GKVKMIMATNRP---DVLDPALLRPGRLDRKIEIPLP 203 (292)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~----~~~~~~----~~~~vi~t~~~~---~~l~~~l~~~~r~~~~i~l~~p 203 (292)
-......+..+++.- +..... ....+|+|||.. +..-+.+.+ |+ .++.|+.|
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 122223344444331 111111 135688999873 223356777 77 56666643
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.90 E-value=7.4e-10 Score=95.50 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=58.4
Q ss_pred CCccccccccH----HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEec
Q 022768 28 NVSYSAVGGLS----DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVS 99 (292)
Q Consensus 28 ~~~~~~l~g~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~ 99 (292)
+.+|+++.+.. .+.+.+..++..+ +...+.+++|+||+|+|||+++.++++.+. .+++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46899988643 2344444555432 111357899999999999999999998664 67777777
Q ss_pred cchhccccChH-HHHHHHHHHHhhhCCCEEEEEcccccc
Q 022768 100 SAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAI 137 (292)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~lDe~d~l 137 (292)
..+........ .......+.... ...+|+|||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 65543221110 001111122222 2369999999654
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.89 E-value=2.9e-09 Score=85.71 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=76.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh--------cC-CcEEEEeccchhcccc----------Ch-----HHHHHHHHHHHhh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN--------ID-ANFLKVVSSAIIDKYI----------GE-----SARLIREMFGYAR 122 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~--------l~-~~~~~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~ 122 (292)
..++++|+||+|||++|..++.. .| .+++..+..++..... .. ....+..++. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence 36889999999999998776433 24 6666666554432111 00 0111222211 12
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccC
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~ 202 (292)
...+++|+|||++.+++.+.+... . . .++..+.. ......-+|.+++.+..++..+++ |+...+++..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e-~----~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSK-I----P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCC-C----C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccch-h----H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 234589999999999754422111 1 1 23333322 223456788888889999999998 9988888877
Q ss_pred CCH
Q 022768 203 PNE 205 (292)
Q Consensus 203 p~~ 205 (292)
+..
T Consensus 153 ~~~ 155 (199)
T 2r2a_A 153 NKM 155 (199)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.89 E-value=1.2e-09 Score=93.55 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec--cchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS--SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
+.++..++|+||||+|||+++.+++...+.++.++.. .+..+.+.......+..+........ +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 4567778999999999999999999875545444333 33322222344555555555555544 9999999998543
Q ss_pred cCCC-C-CcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCC
Q 022768 141 RFSE-G-TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (292)
Q Consensus 141 ~~~~-~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~ 180 (292)
..+. . ..........+..+..... ..++.+|+++|.
T Consensus 198 ~~~~s~~G~v~~~lrqlL~~L~~~~k----~~gvtVIlttnp 235 (331)
T 2vhj_A 198 AGGNTTSGGISRGAFDLLSDIGAMAA----SRGCVVIASLNP 235 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHH----HHTCEEEEECCC
T ss_pred cccccccchHHHHHHHHHHHHHHHHh----hCCCEEEEEeCC
Confidence 3221 0 0112222333333333222 135667888774
No 104
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.85 E-value=1e-09 Score=75.21 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCccCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 022768 206 QSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLN 274 (292)
Q Consensus 206 ~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 274 (292)
++|.+||+.++.......+++++.++..+.|||+.||..+|++|...|..+....|+.+|+.+|+..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 468899999998877777899999999999999999999999999999999989999999999999985
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.73 E-value=8.9e-08 Score=102.61 Aligned_cols=139 Identities=20% Similarity=0.344 Sum_probs=90.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-CCcEEEEeccchhccccChHHHHHHHHHHH-h---h------------hCCCE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAIIDKYIGESARLIREMFGY-A---R------------DHQPC 127 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~------------~~~~~ 127 (292)
.+.++||+||+|||||.+++.+++.+ +.+++.++++...+ ...+...+.. . . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 36789999999999998887766655 44566666654322 2223233321 0 0 01235
Q ss_pred EEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCC-------CCCeEEEEEeCCCC-----CCChhhcCCCCcc
Q 022768 128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ-------LGKVKMIMATNRPD-----VLDPALLRPGRLD 195 (292)
Q Consensus 128 il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~vi~t~~~~~-----~l~~~l~~~~r~~ 195 (292)
|+||||++.-...+. +.+...+.|.++++....+.. ..++.+|+|+|++. .+++++.+ ||
T Consensus 1377 VlFiDDiNmp~~D~y-----GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F- 1448 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKY-----GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA- 1448 (3245)
T ss_dssp EEEETTTTCCCCCTT-----SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-
T ss_pred EEEecccCCCCcccc-----ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-
Confidence 999999986422111 134466777777765322111 13688999999873 58999998 88
Q ss_pred eEEEccCCCHHHHHHHHHHHHc
Q 022768 196 RKIEIPLPNEQSRMEILKIHAA 217 (292)
Q Consensus 196 ~~i~l~~p~~~~r~~i~~~~~~ 217 (292)
..+.++.|+.++...|+..++.
T Consensus 1449 ~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 5689999999999999876654
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.69 E-value=2.4e-06 Score=79.97 Aligned_cols=179 Identities=11% Similarity=0.092 Sum_probs=100.2
Q ss_pred CCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVSS 100 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-------~~~~~~~~~~ 100 (292)
|.....++|.+...++|.+.+... -...+.+.|+|++|+|||++|+.+++.. ...++.++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 344567999999999999987642 1235678999999999999999997532 2223333322
Q ss_pred chhcc-----c-----------------cChHHHHHHHHHHHhhh-CCCEEEEEcccccccCCcCCCCCcchHHHHHHHH
Q 022768 101 AIIDK-----Y-----------------IGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 157 (292)
Q Consensus 101 ~~~~~-----~-----------------~~~~~~~~~~~~~~~~~-~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~ 157 (292)
..... . ..........+...... .++.+|+|||++.. .
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~--- 249 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W--- 249 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H---
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H---
Confidence 21000 0 00011111112111122 25789999999643 1
Q ss_pred HHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEE-ccCCCHHHHHHHHHHHHcCccCCCCCCHHHHHHHcCC
Q 022768 158 ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE-IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG 236 (292)
Q Consensus 158 ~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~-l~~p~~~~r~~i~~~~~~~~~~~~~~~~~~l~~~~~g 236 (292)
.+..+ .++..||+|++....... ... .. ..+. +.+++.++-.+++.................+...+.|
T Consensus 250 -~l~~l-----~~~~~ilvTsR~~~~~~~-~~~--~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 250 -VLKAF-----DSQCQILLTTRDKSVTDS-VMG--PK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp -HHHTT-----CSSCEEEEEESCGGGGTT-CCS--CE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred -HHHHh-----cCCCeEEEECCCcHHHHh-cCC--Cc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 11211 245678888875432111 111 11 2222 2478999999999988754222223346778888888
Q ss_pred CCHHHHHHHHH
Q 022768 237 FNGADLRNVCT 247 (292)
Q Consensus 237 ~~~~di~~l~~ 247 (292)
.|--+..+..
T Consensus 320 -~PLal~~~a~ 329 (591)
T 1z6t_A 320 -SPLVVSLIGA 329 (591)
T ss_dssp -CHHHHHHHHH
T ss_pred -CcHHHHHHHH
Confidence 5545554433
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.68 E-value=1.7e-07 Score=74.04 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=23.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANF 94 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~ 94 (292)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.68 E-value=1.6e-07 Score=100.62 Aligned_cols=128 Identities=16% Similarity=0.250 Sum_probs=95.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~ 145 (292)
..+..+.||+|||||.+++.+|+.+|.+++.++|.+-.+. ..+..+|..+..+ .+..++|||+++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC--------
Confidence 3456799999999999999999999999999998875432 2344555544444 378999999998
Q ss_pred CcchHHHHHHHHHHHHHh----------------hCCCCCCCeEEEEEeCC----CCCCChhhcCCCCcceEEEccCCCH
Q 022768 146 TSADREIQRTLMELLNQL----------------DGFDQLGKVKMIMATNR----PDVLDPALLRPGRLDRKIEIPLPNE 205 (292)
Q Consensus 146 ~~~~~~~~~~l~~~l~~~----------------~~~~~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~l~~p~~ 205 (292)
+.+....+.+.+..+ ..+.-++.+.+++|.|+ ..++++.++. +| ..+.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 666666665544421 11233446889999985 4679999999 88 6799999999
Q ss_pred HHHHHHHHH
Q 022768 206 QSRMEILKI 214 (292)
Q Consensus 206 ~~r~~i~~~ 214 (292)
+...+++-.
T Consensus 743 ~~i~ei~L~ 751 (3245)
T 3vkg_A 743 EMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888643
No 109
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.62 E-value=7.6e-08 Score=80.34 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~ 144 (292)
+..+++|+||||||||++++++|+.++. +..++... ..+ .+.. .....++++||....
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~------- 160 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT------- 160 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch-------
Confidence 3567999999999999999999997643 22222211 000 1111 122357777777554
Q ss_pred CCcchHHHHHHHHHHHH----HhhCCC----CCCCeEEEEEeCC-C----------CCCChhhcCCCCcceEEEcc----
Q 022768 145 GTSADREIQRTLMELLN----QLDGFD----QLGKVKMIMATNR-P----------DVLDPALLRPGRLDRKIEIP---- 201 (292)
Q Consensus 145 ~~~~~~~~~~~l~~~l~----~~~~~~----~~~~~~vi~t~~~-~----------~~l~~~l~~~~r~~~~i~l~---- 201 (292)
.+....+..++. .++... ...+..+|+|||. . +...+.|++ |+ ..+.|+
T Consensus 161 -----~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 161 -----AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp -----TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred -----hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 122233444443 111111 1135668888886 1 234567888 77 777787
Q ss_pred ----CCCHHHHHHHHHHH
Q 022768 202 ----LPNEQSRMEILKIH 215 (292)
Q Consensus 202 ----~p~~~~r~~i~~~~ 215 (292)
+.+.++-...+++.
T Consensus 233 ~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp TTSCCCCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHH
Confidence 66778888877754
No 110
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.52 E-value=6e-06 Score=83.55 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=107.3
Q ss_pred hhcccCCCCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CC
Q 022768 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------DA 92 (292)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l-------~~ 92 (292)
..+.....|.....++|+++.+++|.+.+... -...+.+.|+|+.|+|||+||+.+++.. ..
T Consensus 112 ~~l~~~~~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~ 180 (1249)
T 3sfz_A 112 TVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSG 180 (1249)
T ss_dssp HHHHHTTCCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTT
T ss_pred heeccCCCCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCC
Confidence 33444445555677999999999999988532 1234568899999999999999988752 22
Q ss_pred cEEEEeccchhcc---------------------ccChHHHHHHHHHHHhhhC--CCEEEEEcccccccCCcCCCCCcch
Q 022768 93 NFLKVVSSAIIDK---------------------YIGESARLIREMFGYARDH--QPCIIFMDEIDAIGGRRFSEGTSAD 149 (292)
Q Consensus 93 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~--~~~il~lDe~d~l~~~~~~~~~~~~ 149 (292)
.++.++....... ........+...+...... ++.+|+||+++..
T Consensus 181 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~------------ 248 (1249)
T 3sfz_A 181 GVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP------------ 248 (1249)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH------------
T ss_pred eEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH------------
Confidence 3334443321100 0001112222222222222 3689999999643
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEEccC-CCHHHHHHHHHHHHcCccCCCCCCHH
Q 022768 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL-PNEQSRMEILKIHAAGIAKHGEIDYE 228 (292)
Q Consensus 150 ~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~l~~-p~~~~r~~i~~~~~~~~~~~~~~~~~ 228 (292)
.. +.. + .++..||+||+.+....... .....+.++. ++.++-.+++..+.............
T Consensus 249 ----~~----~~~---~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~ 311 (1249)
T 3sfz_A 249 ----WV----LKA---F--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAH 311 (1249)
T ss_dssp ----HH----HTT---T--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHH
T ss_pred ----HH----HHh---h--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHH
Confidence 11 111 1 24567889988654321111 2234567775 88899999998877533222223356
Q ss_pred HHHHHcCCCCHHHHHHH
Q 022768 229 AVVKLAEGFNGADLRNV 245 (292)
Q Consensus 229 ~l~~~~~g~~~~di~~l 245 (292)
.+.....|. |--|..+
T Consensus 312 ~i~~~~~gl-PLal~~~ 327 (1249)
T 3sfz_A 312 SIIKECKGS-PLVVSLI 327 (1249)
T ss_dssp HHHHHTTTC-HHHHHHH
T ss_pred HHHHHhCCC-HHHHHHH
Confidence 788888874 4344433
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.50 E-value=3e-07 Score=95.20 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|+.++.+++|+||||+|||++|.+++.+. +..+.+++..+.... .....+..+..+...++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37889999999999999999999998765 556777765543211 11123456666677777
Q ss_pred hCCCEEEEEcccccccCC
Q 022768 123 DHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~ 140 (292)
...|++|+||+++.+.+.
T Consensus 1503 ~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred cCCCCEEEEcChhHhccc
Confidence 788999999999988653
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.41 E-value=2.6e-06 Score=69.62 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
|+.++..++|.||+|+||||+++.++... +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678889999999999999999999654 44555544
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.36 E-value=9.1e-07 Score=72.98 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh--c-------CCcEEEEeccchhc---------cc--------------cC-
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN--I-------DANFLKVVSSAIID---------KY--------------IG- 108 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~--l-------~~~~~~~~~~~~~~---------~~--------------~~- 108 (292)
|+.++..++|+||+|+||||+++.++.. . +..+++++...... .. ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3677888999999999999999999984 3 34567766544100 00 00
Q ss_pred hHH---HHHHHHHHHhhhCCCEEEEEcccccccC
Q 022768 109 ESA---RLIREMFGYARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 109 ~~~---~~~~~~~~~~~~~~~~il~lDe~d~l~~ 139 (292)
... ..+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 011 1122233334456789999999988753
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.35 E-value=9.1e-07 Score=71.82 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~ 101 (292)
|+.++..++|.||+|+||||+++.++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3677888999999999999999999985566777777544
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.35 E-value=1.6e-06 Score=75.69 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------ccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 122 (292)
|+.++..++|+||||+||||++..++..+ +..+++++....... ........+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 36778889999999999999999999865 556777775542210 01112222322222333
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 45678999999988864
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.35 E-value=2e-06 Score=71.28 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=63.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHH--Hh--cCCcEEEEeccchhcc------ccC-----------------------
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIA--SN--IDANFLKVVSSAIIDK------YIG----------------------- 108 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la--~~--l~~~~~~~~~~~~~~~------~~~----------------------- 108 (292)
|+.++..+.|.||+|+||||+++.++ .. .+...+.+........ ..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 46778899999999999999999998 33 2334444433211100 000
Q ss_pred -------------hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEE
Q 022768 109 -------------ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (292)
Q Consensus 109 -------------~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 175 (292)
........+........|.+|+|||...+..... ........+..++..+.. .++.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 0111222333333456789999999877642110 113334445555555431 256688
Q ss_pred EEeCCCCCC
Q 022768 176 MATNRPDVL 184 (292)
Q Consensus 176 ~t~~~~~~l 184 (292)
++++.....
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 888876554
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.29 E-value=1.1e-06 Score=76.86 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc----------------cChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY----------------IGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 122 (292)
|+.++..++|+||||+||||++..++... +..+++++........ .......+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 35678889999999999999999998654 5567776654322110 0012222222222333
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999999863
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.28 E-value=1.5e-06 Score=78.93 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=37.5
Q ss_pred hhhcccCCCCCcccccc-ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 19 YNMLHEDPGNVSYSAVG-GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 19 ~~~~~~~~~~~~~~~l~-g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.+..+++.|.+|++|- ++.+++..+...+... ...++|.|++|||||+++..++..+
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34556788889999885 5666666666665431 2389999999999999999999877
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.28 E-value=3.8e-06 Score=73.80 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc----------------cChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY----------------IGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 122 (292)
|+.++..++|+|+||+|||+++..++... +.++++++........ ....+..+..+.....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46778889999999999999999988764 5677777755422110 0112222222222233
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45678999999999864
No 120
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.25 E-value=1.1e-06 Score=77.45 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=66.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccchhccccChHHHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
+++.++..++|+||+|+||||+++.++...+..++.+..... ..... ++ ......++++||++.+..-
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~----lg--~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFE----LG--VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHH----HG--GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHH----HH--HhcchhHHHHHHHHHHHHH
Confidence 367888899999999999999999999988765544221110 10111 11 1122356799999987531
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCChhhcCCCCcceEEE
Q 022768 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199 (292)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~ 199 (292)
...... .. ... .+..+.+.+. +.+.+++++|.++.+ +.+.+++++...+.
T Consensus 232 ~r~l~~-~~-~~~-~~~~l~~~ld-----G~v~v~~~tn~~~~l-~alf~pg~ld~~~~ 281 (377)
T 1svm_A 232 SRDLPS-GQ-GIN-NLDNLRDYLD-----GSVKVNLEKKHLNKR-TQIFPPGIVTMNEY 281 (377)
T ss_dssp TTTCCC-CS-HHH-HHHTTHHHHH-----CSSCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred Hhhccc-cC-cch-HHHHHHHHhc-----CCCeEeeccCchhhH-HHhhcCcccChhHH
Confidence 100000 01 110 1122223333 234577788888877 56665555544433
No 121
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.23 E-value=4.2e-05 Score=71.01 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH----hcCCcE---EEEeccchh----
Q 022768 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS----NIDANF---LKVVSSAII---- 103 (292)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~----~l~~~~---~~~~~~~~~---- 103 (292)
+|+++.+++|.+.+... +-.....+.|+|+.|+||||+|+.+++ .....| +.++.....
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988542 012346788999999999999999996 333222 222222210
Q ss_pred cc--------c--------c----ChHHHHHHHHHHHhhhCC-CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHH
Q 022768 104 DK--------Y--------I----GESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (292)
Q Consensus 104 ~~--------~--------~----~~~~~~~~~~~~~~~~~~-~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~ 162 (292)
.. . . ......+...+......+ +.+|+||+++.. ... .+. ..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~---~~~---~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI---RWA---QE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH---HHH---HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh---ccc---cc
Confidence 00 0 0 000111222233333343 789999999754 111 111 11
Q ss_pred hhCCCCCCCeEEEEEeCCCCCCChhhcCCC-CcceEEEccCCCHHHHHHHHHHHHcCccCCCCC--CHHHHHHHcCCCCH
Q 022768 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPG-RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEGFNG 239 (292)
Q Consensus 163 ~~~~~~~~~~~vi~t~~~~~~l~~~l~~~~-r~~~~i~l~~p~~~~r~~i~~~~~~~~~~~~~~--~~~~l~~~~~g~~~ 239 (292)
.+..||+||+... +.... .....+.+++++.++-.+++..+.......... ....++....| .|
T Consensus 264 -------~gs~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-lP 330 (549)
T 2a5y_B 264 -------LRLRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NP 330 (549)
T ss_dssp -------TTCEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-CH
T ss_pred -------CCCEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-Ch
Confidence 3566888887532 22110 122568899999999999999875432110000 13456666776 44
Q ss_pred HHHH
Q 022768 240 ADLR 243 (292)
Q Consensus 240 ~di~ 243 (292)
--|.
T Consensus 331 LAl~ 334 (549)
T 2a5y_B 331 ATLM 334 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3443
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.22 E-value=5.2e-06 Score=67.75 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
|+.++..+.|.||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46778889999999999999999999844
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.19 E-value=2.4e-06 Score=73.99 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccchh--c-------cc---------------cC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAII--D-------KY---------------IG 108 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~~~--~-------~~---------------~~ 108 (292)
|+.++..++|+|+||+|||+++..++... +..+++++..... . .. ..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56778889999999999999999999865 4567777765421 0 00 00
Q ss_pred hHH---HHHHHHHHHhhh-CCCEEEEEcccccccC
Q 022768 109 ESA---RLIREMFGYARD-HQPCIIFMDEIDAIGG 139 (292)
Q Consensus 109 ~~~---~~~~~~~~~~~~-~~~~il~lDe~d~l~~ 139 (292)
... ..+..+...... ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122333344444 6789999999998863
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.18 E-value=5.2e-06 Score=72.43 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccchhc--c-------c-----------------
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIID--K-------Y----------------- 106 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~~~~--~-------~----------------- 106 (292)
|+.++..++|+||||+|||+++..++... +..+++++...... . .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 57788889999999999999999999862 45677777554211 0 0
Q ss_pred -cChHHHHHHHHHHHhhh--CCCEEEEEcccccccC
Q 022768 107 -IGESARLIREMFGYARD--HQPCIIFMDEIDAIGG 139 (292)
Q Consensus 107 -~~~~~~~~~~~~~~~~~--~~~~il~lDe~d~l~~ 139 (292)
..+....+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 00111122223333444 5678999999998863
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.18 E-value=3.2e-06 Score=73.98 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccc---------------cChHHHHHHHHHH-Hhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY---------------IGESARLIREMFG-YAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~ 122 (292)
|+.++..++|+|+||+|||++|..++... +.++++++........ .......+...+. ...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 36778889999999999999999998754 5677777764322110 0011112222222 223
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45678999999998864
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.15 E-value=4.8e-06 Score=73.99 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=49.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccchhcc--------ccC----------------
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIIDK--------YIG---------------- 108 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~~~~~--------~~~---------------- 108 (292)
|+.++..+.|+||||+|||||++.++... +..+++++....... ..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 67788889999999999999999876432 234666665432110 000
Q ss_pred ---hHHHHHHHHHHHhhhCCCEEEEEcccccccCC
Q 022768 109 ---ESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (292)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~ 140 (292)
.....+..+...+....|.+|+||++..++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00112222333344467899999999887643
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.14 E-value=8.2e-06 Score=71.40 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecc-chh---------ccccChHHHHHHHHHHHhhhCCCEEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS-AII---------DKYIGESARLIREMFGYARDHQPCIIF 130 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~il~ 130 (292)
++..++|.||+|+||||++++++..+. ..++.+... ++. ....+.........+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 456799999999999999999998763 233332211 110 001111112234567777788999999
Q ss_pred EcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCC
Q 022768 131 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (292)
Q Consensus 131 lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~ 183 (292)
+||.- +.+....+..... .+..+++|++..+.
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~--------~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE--------TGHLVFGTLHTTSA 233 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH--------TTCEEEEEESCSSH
T ss_pred cCCCC-------------CHHHHHHHHHHHh--------cCCEEEEEEccChH
Confidence 99983 2333333333322 14458888887654
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.11 E-value=5.4e-06 Score=72.48 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=32.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCcEEEEeccc
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSA 101 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l---------~~~~~~~~~~~ 101 (292)
.|+.++..+.|+||+|+||||+++.++... +..+++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 467788889999999999999999999876 23556666543
No 129
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.10 E-value=1.9e-05 Score=64.30 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=42.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc-------hhccccChH-----HHHHHHHHHHhhh----CC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA-------IIDKYIGES-----ARLIREMFGYARD----HQ 125 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~----~~ 125 (292)
++..++++|++|+||||++..++..+ +..++.+.... +.+. .+.. ......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35668888999999999988888766 45555553221 1111 0100 0011234444433 34
Q ss_pred CEEEEEcccccc
Q 022768 126 PCIIFMDEIDAI 137 (292)
Q Consensus 126 ~~il~lDe~d~l 137 (292)
+.+|+|||++.+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999877
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.10 E-value=1.9e-05 Score=64.99 Aligned_cols=37 Identities=38% Similarity=0.459 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
|+.++..++|.||||+|||+++..++... +.++++++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 46778889999999999999988887543 44555554
No 131
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.10 E-value=5.6e-06 Score=69.37 Aligned_cols=71 Identities=21% Similarity=0.432 Sum_probs=44.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEEeccch---h--------ccccChHHHHHHHHHHHhhhCCCEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSSAI---I--------DKYIGESARLIREMFGYARDHQPCII 129 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~il 129 (292)
.++..++|.||+|+||||+++.++..+.. .-+.+....+ . ....+.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 56788999999999999999999986632 1222221111 0 00000011123455666666789999
Q ss_pred EEccc
Q 022768 130 FMDEI 134 (292)
Q Consensus 130 ~lDe~ 134 (292)
++||.
T Consensus 103 llDEp 107 (261)
T 2eyu_A 103 FVGEM 107 (261)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 99998
No 132
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.09 E-value=3.2e-06 Score=71.33 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56788899999999999999999997663
No 133
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.04 E-value=7.7e-06 Score=63.92 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~ 85 (292)
+.++..+.|.||+|+||||+++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45678899999999999999994
No 134
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.04 E-value=1.7e-05 Score=66.56 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5678889999999999999999999765
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.04 E-value=2.1e-06 Score=68.05 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..++++||+|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999986666543
No 136
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.03 E-value=4e-06 Score=65.72 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
+..++|+|+||+||||+++.+++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3568999999999999999999999988877665443
No 137
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.00 E-value=7.7e-06 Score=71.52 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+|||||++.++....
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 367788899999999999999999997653
No 138
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.00 E-value=1.1e-05 Score=67.45 Aligned_cols=30 Identities=37% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+|||||++.++....
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356788899999999999999999997663
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=3.8e-06 Score=67.30 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+.++..++|.|++|+||||+++.+++.++.+++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 456778999999999999999999999988876443
No 140
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.98 E-value=2.1e-05 Score=67.06 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCcEEEEeccchhcc----------------ccChHHHHHHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIIDK----------------YIGESARLIREMFGY 120 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l-----~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 120 (292)
|+.++ .++|+||||+|||+++-.++... +..+++++..+-... .....+...-.+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 35666 68999999999999988777654 556777775543210 001122220112222
Q ss_pred ---hhhCCCEEEEEcccccccC
Q 022768 121 ---ARDHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 121 ---~~~~~~~il~lDe~d~l~~ 139 (292)
+....|.+|+||-+..+..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 3445789999999999974
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.98 E-value=3.5e-05 Score=65.03 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
|+.++..++|+||+|+||||++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35668889999999999999999998644
No 142
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.97 E-value=0.00014 Score=67.05 Aligned_cols=74 Identities=15% Similarity=0.325 Sum_probs=53.3
Q ss_pred EEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC--CCChhhcCCCCcceEEEccCCC
Q 022768 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD--VLDPALLRPGRLDRKIEIPLPN 204 (292)
Q Consensus 127 ~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~--~l~~~l~~~~r~~~~i~l~~p~ 204 (292)
-+|+|||++.+.... .......+..+..... .-++.+|++++.+. .++..++. .|...+-|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999874311 2344455556655532 24899999999887 78888887 788888888888
Q ss_pred HHHHHHHHH
Q 022768 205 EQSRMEILK 213 (292)
Q Consensus 205 ~~~r~~i~~ 213 (292)
..+...++-
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 887777763
No 143
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.97 E-value=3.8e-05 Score=65.66 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=26.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++..+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 367788999999999999999999997663
No 144
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.97 E-value=7.3e-06 Score=72.10 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 356788899999999999999999997663
No 145
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.96 E-value=4.6e-05 Score=62.71 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35778889999999999999999999765
No 146
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.95 E-value=1.1e-05 Score=69.66 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
|++++..++|+|+||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677888999999999999999999975
No 147
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.95 E-value=3.5e-05 Score=62.94 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+|||||++.++....
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788899999999999999999997663
No 148
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.94 E-value=9.2e-06 Score=70.92 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 35678889999999999999999999765
No 149
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.92 E-value=9.6e-06 Score=64.30 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..+..++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44567799999999999999999999998776653
No 150
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.92 E-value=1.7e-05 Score=69.37 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 35678889999999999999999999765
No 151
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.90 E-value=1.5e-05 Score=69.54 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56688899999999999999999997653
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.90 E-value=9e-05 Score=67.66 Aligned_cols=76 Identities=16% Similarity=0.381 Sum_probs=50.1
Q ss_pred CCE-EEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC--CCChhhcCCCCcceEEEcc
Q 022768 125 QPC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD--VLDPALLRPGRLDRKIEIP 201 (292)
Q Consensus 125 ~~~-il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~--~l~~~l~~~~r~~~~i~l~ 201 (292)
.|. +|+|||+..+.... .......+..+..... .-++.+|++++.+. .++..++. .+...+-|.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 88999998774210 1223333333333321 23788889998886 57777877 788888888
Q ss_pred CCCHHHHHHHHH
Q 022768 202 LPNEQSRMEILK 213 (292)
Q Consensus 202 ~p~~~~r~~i~~ 213 (292)
..+..+...++.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 888888887765
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.89 E-value=9.3e-05 Score=62.94 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEe
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVV 98 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~ 98 (292)
.++.++..++|.||||+||||+++.++..+ |.+++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 356788899999999999999999999765 33555543
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.88 E-value=9.5e-06 Score=64.28 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=32.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
+.++..++|.||+|+||||+++.++...+...+.++...+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4667889999999999999999999987767666665443
No 155
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.88 E-value=7.5e-05 Score=61.93 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999765
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.88 E-value=2.7e-05 Score=80.96 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhccccC----------------hHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG----------------ESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 122 (292)
+++++.+++++||||+|||+++.+++.+. |.++.++...+....... ..+..........+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57889999999999999999999998654 677888887765433220 11122223333344
Q ss_pred hCCCEEEEEcccccccC
Q 022768 123 DHQPCIIFMDEIDAIGG 139 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~ 139 (292)
...|.+|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56789999999999854
No 157
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.86 E-value=8.9e-06 Score=64.15 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+..++|+|++|+||||+++.++..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999998877543
No 158
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.85 E-value=0.0011 Score=53.69 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
..+++.|++|+||||++-.++..+ |..++.++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 458899999999999988888765 6666655543
No 159
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.85 E-value=0.0001 Score=61.28 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788899999999999999999998763
No 160
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.84 E-value=5e-05 Score=62.58 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35778889999999999999999999865
No 161
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.83 E-value=7e-05 Score=62.98 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36778889999999999999999999765
No 162
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.83 E-value=0.00013 Score=60.99 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+|||||++.++....
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 357788899999999999999999998663
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.81 E-value=0.00011 Score=61.18 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 446779999999999999999999999866677776655
No 164
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=0.00011 Score=58.42 Aligned_cols=24 Identities=42% Similarity=0.732 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358899999999999999999876
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.81 E-value=2.6e-05 Score=68.75 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=45.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEecc-ch--hc--cccCh-----HHHHHHHHHHHhhhCCC
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS-AI--ID--KYIGE-----SARLIREMFGYARDHQP 126 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~-~~--~~--~~~~~-----~~~~~~~~~~~~~~~~~ 126 (292)
+.+.++..++|.||+|+||||+++.++..+. ..++.+... +. .. .++.+ ....+...+..+....|
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 3356678899999999999999999998663 223222211 00 00 00000 11123455566666789
Q ss_pred EEEEEccc
Q 022768 127 CIIFMDEI 134 (292)
Q Consensus 127 ~il~lDe~ 134 (292)
.+|++||+
T Consensus 211 d~illdE~ 218 (372)
T 2ewv_A 211 DVIFVGEM 218 (372)
T ss_dssp SEEEESCC
T ss_pred CEEEECCC
Confidence 99999998
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=1.2e-05 Score=63.51 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh-cCCcEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASN-IDANFLK 96 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~-l~~~~~~ 96 (292)
..+..++|+|++|+||||+++.++.. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34667999999999999999999999 6766553
No 167
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.79 E-value=1.8e-05 Score=61.57 Aligned_cols=30 Identities=30% Similarity=0.729 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+..++|+|++|+||||+++.++..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999987554
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.79 E-value=1.5e-05 Score=62.64 Aligned_cols=34 Identities=35% Similarity=0.592 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
..+..++|+|+||+||||+++.++..++.+++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998766543
No 169
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.00013 Score=60.08 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN----IDANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~----l~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||++|..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4677888999999999999999887643 2566666653
No 170
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.78 E-value=0.00014 Score=63.89 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+|||||++.++....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 56678899999999999999999997663
No 171
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.78 E-value=9.2e-05 Score=65.03 Aligned_cols=29 Identities=41% Similarity=0.480 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 35678889999999999999999999765
No 172
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.78 E-value=1.8e-05 Score=61.43 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++|.|++|+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876554
No 173
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.77 E-value=3.7e-05 Score=67.28 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 356788899999999999999999997653
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.77 E-value=0.00014 Score=65.88 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 68888899999999999999999988754 456776663
No 175
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.77 E-value=0.00011 Score=60.54 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.+ ..+.|.||+|+||||+++.++....
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566 7889999999999999999998663
No 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.76 E-value=0.00015 Score=71.24 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+|++..+++|.+.+... ...+.+.|+|+.|+||||+|+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999987642 23467889999999999999999863
No 177
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.76 E-value=0.00017 Score=62.78 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 356788899999999999999999997653
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.75 E-value=0.00012 Score=58.15 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=57.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc---------hhcccc-------------C----hHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA---------IIDKYI-------------G----ESARLIRE 116 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~---------~~~~~~-------------~----~~~~~~~~ 116 (292)
...+++++++|.||||+|-.++-+. |..+..+.... +...+. . ........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3468999999999999998887655 66666653221 122210 0 01222334
Q ss_pred HHHHhhh----CCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 117 MFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 117 ~~~~~~~----~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
.+..++. ....+|+|||+.....- .--....+.+++. ....+.-+|+|+|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~--------g~l~~~ev~~~l~-----~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY--------DYLPLEEVISALN-----ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT--------TSSCHHHHHHHHH-----TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC--------CCCCHHHHHHHHH-----hCcCCCEEEEECCCC
Confidence 4444433 44689999999653100 0001123444443 233577899999875
No 179
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.75 E-value=3.2e-05 Score=67.03 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccchhc-----c---ccChHHHHHHHHHHHhhhCCCEEEEEcc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIID-----K---YIGESARLIREMFGYARDHQPCIIFMDE 133 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~il~lDe 133 (292)
.++..++|.||+|+||||++++++..... ..+.++...... . +........+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 44778999999999999999999998743 234444321110 0 1100112334556667778899999999
Q ss_pred cc
Q 022768 134 ID 135 (292)
Q Consensus 134 ~d 135 (292)
.-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 180
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.74 E-value=1.7e-05 Score=61.57 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
-.+++|.|++|+||||+++.++..++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34799999999999999999999999888754
No 181
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.74 E-value=0.0001 Score=61.19 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+|||||++.++....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788899999999999999999998764
No 182
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.74 E-value=1.6e-05 Score=62.57 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998876543
No 183
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.73 E-value=0.00019 Score=67.23 Aligned_cols=30 Identities=40% Similarity=0.617 Sum_probs=26.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 467889999999999999999999997664
No 184
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.73 E-value=4.5e-05 Score=64.76 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
..+..++|.||||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345678999999999999999999988655666665444
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.72 E-value=0.00011 Score=63.11 Aligned_cols=38 Identities=32% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68889999999999999999999998654 346666653
No 186
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.70 E-value=2.3e-05 Score=61.79 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..++|.|++|+||||+++.+++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4578999999999999999999998866543
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.69 E-value=0.00012 Score=61.15 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCcEEEEeccchh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN---IDANFLKVVSSAII 103 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~---l~~~~~~~~~~~~~ 103 (292)
+..|+|.|+||+||||+++.++.. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 457899999999999999999998 67777755554443
No 188
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.68 E-value=2.8e-05 Score=60.74 Aligned_cols=29 Identities=41% Similarity=0.709 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++|.|+||+||||+++.++..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999877654
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.68 E-value=0.00063 Score=58.11 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc--------------------ccChHHHHHHHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--------------------YIGESARLIREMFGY 120 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 120 (292)
.++..++|.|++|+||||++..+|..+ +..+..+++...... ..+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456778999999999999999999866 445554443322110 001112222234444
Q ss_pred hhhCCCEEEEEccccc
Q 022768 121 ARDHQPCIIFMDEIDA 136 (292)
Q Consensus 121 ~~~~~~~il~lDe~d~ 136 (292)
+....+.+++||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5556778999998743
No 190
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.68 E-value=0.00014 Score=63.45 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678889999999999999999999765
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.65 E-value=3.9e-05 Score=61.37 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
.++..++|.||+|+||||+++.++..+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 34678999999999999999999999865443
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=4.2e-05 Score=59.66 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
++..++|.|++|+||||+++.++..++..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 46679999999999999999999988755543
No 193
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.65 E-value=0.00019 Score=69.97 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
.+..+..++|.||+|+||||+++.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 345677899999999999999999874
No 194
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.64 E-value=0.00019 Score=64.72 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~ 99 (292)
|+.++..++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888889999999999999999888643 456777664
No 195
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.64 E-value=2.2e-05 Score=62.35 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.+..++|.|++|+||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999998776544
No 196
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.64 E-value=0.00027 Score=66.02 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=26.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+.++..+.|.||+|+||||+++.++.....
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 3677889999999999999999999986643
No 197
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.64 E-value=5.4e-05 Score=60.52 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
..+..|+|.|+||+||||+++.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3355689999999999999999999998876654
No 198
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.63 E-value=0.00013 Score=68.00 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=26.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+.++..+.|.||+|+||||+++.++.....
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 3677889999999999999999999987643
No 199
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.61 E-value=3.7e-05 Score=64.06 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
.++|+||+|+||||+++.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877664
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.61 E-value=5.9e-05 Score=70.21 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
+..++|.|+||||||+++..++..+ +.+++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4578999999999999999998755 45555443
No 201
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.61 E-value=4.6e-05 Score=60.98 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..++|.|++|+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45699999999999999999999998776653
No 202
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.61 E-value=4.9e-05 Score=61.69 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+..++.|+|.||||+||+|.|+.+++.++.+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 345667889999999999999999999987655
No 203
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.60 E-value=6.6e-05 Score=58.80 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~ 101 (292)
++..+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 46778999999999999999999987 88888776443
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.60 E-value=5e-05 Score=61.64 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 56799999999999999999999998766544
No 205
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.60 E-value=0.00017 Score=66.58 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc--------------------------cc--ChH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--------------------------YI--GES 110 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~--------------------------~~--~~~ 110 (292)
++.++..++|.|++|+||||+++.++... +.+++++...+.... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 46778899999999999999999999755 334555443221100 00 012
Q ss_pred HHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 111 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 111 ~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
....+.++..+....|.+|+||=+..+... . ...+....+..++..+.. .++.+|++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-----~-~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-----V-SNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-----S-CHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-----C-ChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 334455666666788999999965555221 0 112255556666665542 245666666554
No 206
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=4.8e-05 Score=60.16 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999876654
No 207
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.59 E-value=7.2e-05 Score=61.83 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.++..|+|.||||+||||+++.++..++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4567799999999999999999999998766654
No 208
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.59 E-value=0.00096 Score=59.73 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc--------------------cccChHHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID--------------------KYIGESARLIREMFGYA 121 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 121 (292)
++..+++.|++|+||||++..+|..+ +..+..+.+..... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998766 55565555433211 00112333445566666
Q ss_pred hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCC-C--hhhcCCCCcceEE
Q 022768 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL-D--PALLRPGRLDRKI 198 (292)
Q Consensus 122 ~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l-~--~~l~~~~r~~~~i 198 (292)
......+++||..-.+. .+......+..+..... ...+++|.-+...+.. + ..+.....+. -+
T Consensus 179 ~~~~~DvVIIDTaGrl~---------~d~~lm~el~~i~~~~~----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---------EDKALIEEMKQISNVIH----PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS---------CCHHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc---------chHHHHHHHHHHHHhhc----CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 66667899999875431 13333333444433322 2345555544332211 0 1222111221 12
Q ss_pred EccCCCHHHHHHHHHHHH--cCcc---------C--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH----------HHHH
Q 022768 199 EIPLPNEQSRMEILKIHA--AGIA---------K--HGEIDYEAVVKLAEGFNGADLRNVCTEAGM----------SAIR 255 (292)
Q Consensus 199 ~l~~p~~~~r~~i~~~~~--~~~~---------~--~~~~~~~~l~~~~~g~~~~di~~l~~~a~~----------~a~~ 255 (292)
-+.-.|...+...+.... .+.+ + -...+.+.++..--| .+|+..+++.|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 233333322222111111 1111 1 122456777776654 4488888866533 2222
Q ss_pred hcCCcccHHHHHHHHHHHhh
Q 022768 256 AERDYVIHEDFMKAVRKLNE 275 (292)
Q Consensus 256 ~~~~~i~~~~~~~a~~~~~~ 275 (292)
-.....|.+|+.+-++.+..
T Consensus 323 ~~~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHHT
T ss_pred HhhCCcCHHHHHHHHHHHHh
Confidence 23445888888887777653
No 209
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.58 E-value=4.3e-05 Score=62.01 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..|+|.|+||+||||+++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45689999999999999999999998776654
No 210
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.57 E-value=5.1e-05 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++|.|++|+||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999877654
No 211
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.57 E-value=3.8e-05 Score=60.24 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+..++|.|++|+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.57 E-value=5.3e-05 Score=61.85 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.+..++|.|++|+||||+++.++..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999998766543
No 213
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00025 Score=72.26 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.++++..+.|+||+|+||||+++.+.+.+..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 4678899999999999999999999987754
No 214
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=4.8e-05 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+..++|.|++|+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999886
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.56 E-value=6.3e-05 Score=60.82 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998877655
No 216
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.55 E-value=3.9e-05 Score=60.99 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..|+|.|++|+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999998665543
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.55 E-value=5.9e-05 Score=58.44 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.++|.|+||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888776653
No 218
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.54 E-value=4.4e-05 Score=59.60 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-hcCCcE
Q 022768 67 KGVLLYGPPGTGKTLLARAIAS-NIDANF 94 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~-~l~~~~ 94 (292)
..++|.|+||+||||+++.+++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4588999999999999999998 454333
No 219
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.54 E-value=0.0003 Score=62.16 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 36778889999999999999999999754
No 220
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.54 E-value=0.00041 Score=67.91 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la 87 (292)
...+..++|.||+|+||||+++.++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456779999999999999999995
No 221
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.54 E-value=8e-05 Score=59.53 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~ 101 (292)
.++..+.|.||+|+||||+++.++..+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 457789999999999999999999988 44434555433
No 222
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.54 E-value=6.7e-05 Score=60.62 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877654
No 223
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.53 E-value=6.1e-05 Score=60.23 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+..|+|.|++|+||||+++.+++.++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456889999999999999999999987665543
No 224
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.53 E-value=0.00028 Score=65.90 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36778899999999999999999999765
No 225
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.53 E-value=8.4e-05 Score=58.63 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..++|.|++|+||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999998766544
No 226
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.52 E-value=0.0004 Score=64.82 Aligned_cols=30 Identities=37% Similarity=0.462 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 367788999999999999999999998663
No 227
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.52 E-value=0.00027 Score=58.14 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
..++++||+|+|||.++-.++...+.+++.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3599999999999999999988887777666544
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.51 E-value=0.00078 Score=60.23 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=97.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhcc----------------c----cChHHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------Y----IGESARLIREMFGYA 121 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~ 121 (292)
++..+++.|++|+||||++..+|..+ +..+..+.+...... + ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999999766 555555554322110 0 001122233444455
Q ss_pred hhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCCCCC---hhhcCCCCcceEE
Q 022768 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD---PALLRPGRLDRKI 198 (292)
Q Consensus 122 ~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~~l~---~~l~~~~r~~~~i 198 (292)
....+.+++||....+.. ..+......+..+..... ...+++|..+...+..- ..+...... ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~-------~~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGY-------GEETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSS-------CCTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCccc-------cCCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 545678999998855410 013334444444444432 23555666554332211 112110011 122
Q ss_pred EccCCCHHHH----HHHHHHHH-c------CccC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------
Q 022768 199 EIPLPNEQSR----MEILKIHA-A------GIAK--HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA--------- 256 (292)
Q Consensus 199 ~l~~p~~~~r----~~i~~~~~-~------~~~~--~~~~~~~~l~~~~~g~~~~di~~l~~~a~~~a~~~--------- 256 (292)
-+.-.|...+ ..+....- . +... ....+.+.++..--| .+|+..+++.+.......
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG--MGDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC--SSHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC--CchHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2333332222 22222210 0 1111 123456677765544 248888887776533222
Q ss_pred cCC--cccHHHHHHHHHHHhh
Q 022768 257 ERD--YVIHEDFMKAVRKLNE 275 (292)
Q Consensus 257 ~~~--~i~~~~~~~a~~~~~~ 275 (292)
... ..+.+|+.+-++.+..
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ------CCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHh
Confidence 122 6889999988888774
No 229
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.51 E-value=7.8e-05 Score=57.58 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.|+|.|++|+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877653
No 230
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.51 E-value=9.1e-05 Score=59.12 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-CCcEEEEe
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVV 98 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l-~~~~~~~~ 98 (292)
.+..|+|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 56666654
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.49 E-value=8.9e-05 Score=60.29 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..+.|.||+|+||||+++.+++.++.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468999999999999999999998866654
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=7.4e-05 Score=58.72 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+..+.|.||+|+||||+++.++....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467799999999999999999998764
No 233
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00047 Score=64.45 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3567889999999999999999999765
No 234
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.47 E-value=6.3e-05 Score=61.15 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..|+|.|++|+||||+++.++..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999865543
No 235
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00042 Score=63.93 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc----------EEEEeccchhc---------------cc-----------
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN----------FLKVVSSAIID---------------KY----------- 106 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~----------~~~~~~~~~~~---------------~~----------- 106 (292)
+.++..+.|.||+|+||||+++.++...... +-.+. ..... ..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~-q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 369 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP-QRIFPNYDGTVQQYLENASKDALSTSSWFFEEV 369 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEEC-SSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeec-hhcccccCCCHHHHHHHhhhhccchhHHHHHHH
Confidence 4567889999999999999999999865221 11111 00000 00
Q ss_pred -------------cCh--HHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCC
Q 022768 107 -------------IGE--SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK 171 (292)
Q Consensus 107 -------------~~~--~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 171 (292)
+.. ....-+..+..+....|.+|++||- ++..+......+.+++..+.. ..+
T Consensus 370 l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP----------T~gLD~~~~~~i~~~l~~l~~---~~g 436 (538)
T 3ozx_A 370 TKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP----------SSYLDVEERYIVAKAIKRVTR---ERK 436 (538)
T ss_dssp TTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST----------TTTCCHHHHHHHHHHHHHHHH---HTT
T ss_pred HHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHH---hCC
Confidence 000 1112244555556688999999995 334477777777777766531 124
Q ss_pred eEEEEEeCCCC
Q 022768 172 VKMIMATNRPD 182 (292)
Q Consensus 172 ~~vi~t~~~~~ 182 (292)
..+|+++++.+
T Consensus 437 ~tvi~vsHdl~ 447 (538)
T 3ozx_A 437 AVTFIIDHDLS 447 (538)
T ss_dssp CEEEEECSCHH
T ss_pred CEEEEEeCCHH
Confidence 56777777643
No 236
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.47 E-value=0.0001 Score=60.48 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..|+|.|++|+||||+++.++..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999998766554
No 237
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.47 E-value=8.7e-05 Score=59.74 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++|.||||+||+|.|+.+++.++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47889999999999999999999877654
No 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.47 E-value=0.00049 Score=63.41 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHH--HHhc--CCcEEEEeccchhc------cccC------------------------
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAI--ASNI--DANFLKVVSSAIID------KYIG------------------------ 108 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~l--a~~l--~~~~~~~~~~~~~~------~~~~------------------------ 108 (292)
+.++..++|.||+|+|||||++.+ +... +...++++..+... ...+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 567889999999999999999994 4333 33445544322100 0000
Q ss_pred ------hHHHHHHHHHHHhhhCCCEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 109 ------ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 109 ------~~~~~~~~~~~~~~~~~~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
.....+...........|.+|+|||+-.+... ...+......+..++..+.. .++.+|.++++.+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 01112223333333456789999998665321 12245566667777766642 2556777777765
Q ss_pred CC
Q 022768 183 VL 184 (292)
Q Consensus 183 ~l 184 (292)
.+
T Consensus 187 ~~ 188 (525)
T 1tf7_A 187 EY 188 (525)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.46 E-value=5.9e-05 Score=62.63 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+..+.|.|++|+||||+++.++..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 678999999999999999999999998776543
No 240
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.46 E-value=0.00022 Score=63.70 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---cEEEEecc-ch
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSS-AI 102 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~---~~~~~~~~-~~ 102 (292)
...+++++.-.......|...+. .++..++|.||+|+||||++++++..+.. .++..... +.
T Consensus 142 ~~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~ 207 (418)
T 1p9r_A 142 TRLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 207 (418)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS
T ss_pred CCCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchh
Confidence 34567776444444444444421 34667899999999999999999998743 23333211 11
Q ss_pred h-----cc-ccChHHHHHHHHHHHhhhCCCEEEEEccc
Q 022768 103 I-----DK-YIGESARLIREMFGYARDHQPCIIFMDEI 134 (292)
Q Consensus 103 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~il~lDe~ 134 (292)
. .. ............+..+....|.++++.|+
T Consensus 208 ~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 208 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred ccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 00 00011112223344445567889988885
No 241
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.46 E-value=5e-05 Score=65.90 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
..+...+.+...+...+.. ....+++|+|++|+||||+++.++..++.+++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4455566666665443111 223459999999999999999999999877643
No 242
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.45 E-value=0.00041 Score=64.04 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999755
No 243
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.44 E-value=0.00049 Score=63.47 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++..+.|.||+|+||||+++.++..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 346678899999999999999999755
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=0.00011 Score=56.60 Aligned_cols=29 Identities=34% Similarity=0.424 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||.|+||||+++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46778889999999999999999999987
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=9.6e-05 Score=59.04 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999999864
No 246
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.42 E-value=0.00041 Score=60.06 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
|+.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 57888889999999999999999998754 566666553
No 247
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.41 E-value=0.00013 Score=57.55 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
.++|.|++|+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887665
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=0.00013 Score=57.62 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+.|+|+||+|+||||+++.+.......+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45999999999999999999988754443
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.41 E-value=0.0001 Score=59.13 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56678899999999999999999999875
No 250
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.41 E-value=0.00025 Score=72.98 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=72.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccchhc----------------cccChHHHHHHHHHHHhh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID----------------KYIGESARLIREMFGYAR 122 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 122 (292)
|.+.++.+.++||+|+||||++-.++.+. |..+.+++..+-.+ ..+...+..+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 45667889999999999999997777533 66666666543222 233345667777777778
Q ss_pred hCCCEEEEEcccccccCCcCCCCCcc--hHH-HHHHHHHHHHHhhCCCCCCCeEEEEEeCCCC
Q 022768 123 DHQPCIIFMDEIDAIGGRRFSEGTSA--DRE-IQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (292)
Q Consensus 123 ~~~~~il~lDe~d~l~~~~~~~~~~~--~~~-~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~~ 182 (292)
...+++|++|-+..|.++..-..... .-. ..+.+.+.+..+.+.-...++.+|++....+
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~ 1569 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 1569 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC-
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccc
Confidence 88899999999999976542221111 111 1222223333333222224677777765443
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.38 E-value=0.00013 Score=58.95 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999998777654
No 252
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.36 E-value=0.00016 Score=60.06 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
++..+.|.||+|+||||+++.+++.++..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4567899999999999999999999987654
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=0.00011 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3557789999999999999999999877
No 254
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.35 E-value=0.001 Score=59.92 Aligned_cols=38 Identities=32% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
|+.++.-++|.|+||+|||+++-.+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 68888899999999999999998888654 556766653
No 255
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=9e-05 Score=59.27 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.+.|.|++|+||||+++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 876665544
No 256
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.00018 Score=57.03 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999998 88887554
No 257
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00014 Score=57.86 Aligned_cols=28 Identities=18% Similarity=0.533 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
.++|.|++|+||||+++.+++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 258
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0019 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+.|.||+|+|||||++.++...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 558999999999999999999865
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.33 E-value=0.00014 Score=62.38 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
..++|+||+|+|||++++.+|+.++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999888777754
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.33 E-value=0.00016 Score=59.80 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+..+.|.||+|+||||+++.+++.++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999998876544
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=58.69 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
++..+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 466799999999999999999998764
No 262
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.33 E-value=7e-05 Score=60.19 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
.+..|+|.|++|+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987544
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.31 E-value=0.00018 Score=58.91 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..+.|.||+|+||||+++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578899999999999999999999866543
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.31 E-value=0.00014 Score=59.13 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678889999999999999999999977
No 265
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.31 E-value=0.00016 Score=58.92 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.++|.|++|+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998655443
No 266
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.31 E-value=0.00015 Score=58.41 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.++..++|.||+|+||||+++.++..++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35677899999999999999999998753
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.31 E-value=0.00068 Score=53.76 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKV 97 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~ 97 (292)
.+.-.+++||.|+||||.+-.++... +..++.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35678889999999999888777765 4455444
No 268
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.30 E-value=0.00013 Score=58.08 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.+.|+|++||||||+++.++..+|.+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999887766543
No 269
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.30 E-value=0.00036 Score=71.20 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++++..+-|+|++|+||||+++.+.+-.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 46788999999999999999999999766
No 270
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.28 E-value=0.00018 Score=57.67 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.+.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999988 7777654
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.28 E-value=0.0001 Score=58.14 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.|+|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999886
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=0.00028 Score=56.68 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.++..+.|.||+|+||||+++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5577889999999999999999999875
No 273
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.27 E-value=0.00043 Score=63.43 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSS 100 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~ 100 (292)
|+.++..++|.|+||+|||+++..+|... +.+++.++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 68888899999999999999999988754 4567766643
No 274
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.00019 Score=57.56 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
+..|+|.|++|+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988763
No 275
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00014 Score=58.40 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc-CCcEE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI-DANFL 95 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l-~~~~~ 95 (292)
+.++..+.|.|++|+||||+++.++..+ +..++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 4556678899999999999999999987 44443
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.25 E-value=0.00018 Score=58.44 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56788899999999999999999999875
No 277
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.25 E-value=0.0015 Score=63.03 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
.++..++|.||+|+||||++|.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35677999999999999999999864
No 278
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.24 E-value=9.9e-05 Score=59.40 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
..+..|+|.|++|+||||+++.++..++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34667999999999999999999998743
No 279
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.24 E-value=0.0012 Score=61.85 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=26.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++....
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 367888999999999999999999997663
No 280
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.24 E-value=0.00088 Score=62.69 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+|||||++.++..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5678889999999999999999999755
No 281
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.23 E-value=0.00026 Score=56.54 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.+.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999997776544
No 282
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.23 E-value=0.0011 Score=52.40 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCChHH-HHHHHHHHhc--CCcEEEEec
Q 022768 65 PPKGVLLYGPPGTGKT-LLARAIASNI--DANFLKVVS 99 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT-~l~~~la~~l--~~~~~~~~~ 99 (292)
.+.-.+++||.|+||| .|++.+.+.. +..++.+..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3566889999999999 7888877654 556666653
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.22 E-value=0.00021 Score=57.41 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+||||+++.++..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357788899999999999999999999874
No 284
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.22 E-value=0.00028 Score=57.01 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..+.|.|++|+||||+++.++. ++.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 77665543
No 285
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.22 E-value=0.00019 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.21 E-value=0.00023 Score=60.76 Aligned_cols=30 Identities=30% Similarity=0.600 Sum_probs=27.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++++..+.|+||+|+|||||++.++..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 457889999999999999999999999987
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.21 E-value=0.0003 Score=55.94 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..|.|.|++|+||||+++.+++. +.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456889999999999999999998 7666543
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00031 Score=56.38 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
.++..+.|.||+|+||||+++.++..++..+..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45667889999999999999999998773333333
No 289
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.18 E-value=0.00028 Score=56.22 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
...+..++|.||+|+||||+++.+++...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34577899999999999999999998865
No 290
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.17 E-value=0.0011 Score=52.91 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
..+..+.|.|++|+||||+++.++..+ +.++...+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 456678899999999999999999876 5555555433
No 291
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.17 E-value=0.0016 Score=62.72 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCCccccccccHHHHHHHHHHhhcccCC--hHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPLMN--PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+..+|.++.-.+...+.+...-..|... ...... +..+..+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456777755555555555444333211 111111 223567999999999999977777543
No 292
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.17 E-value=0.0013 Score=61.54 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++..+.|.||+|+|||||++.++..+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567889999999999999999999865
No 293
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.16 E-value=0.0022 Score=59.18 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++..+.|.||+|+|||||++.++...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999865
No 294
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.16 E-value=0.0028 Score=62.79 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la 87 (292)
+..++|+||+|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999984
No 295
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.16 E-value=0.00044 Score=57.31 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCc--------EEEEeccchhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDAN--------FLKVVSSAIID 104 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~--------~~~~~~~~~~~ 104 (292)
+..|.|.|++|+||||+++.++..++.+ +..++...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4568899999999999999999998876 33566655543
No 296
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.16 E-value=0.00056 Score=64.16 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..++++|+|||||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988877654
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00031 Score=55.28 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEec
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVS 99 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~ 99 (292)
..+..++|.|++|+||||+++.++..++ .++..++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4567799999999999999999998874 34555543
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.16 E-value=0.00027 Score=58.38 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
+.++..+.|.||+|+||||+++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4567778899999999999999999987643
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00035 Score=59.63 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999876
No 300
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.14 E-value=0.0016 Score=66.33 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+.++..+.|.||+|+||||+++.+++....
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3678889999999999999999999987643
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.00031 Score=55.41 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
..++|.||+|+||||+++.++...+. .+.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~ 34 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEG 34 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcc
Confidence 45789999999999999999986543 234443
No 302
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.14 E-value=0.00025 Score=61.17 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEecc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~ 100 (292)
+..++|.||+|+|||+++..||+.++..++..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45688999999999999999999998777766654
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00042 Score=56.82 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
..+..+.|.|++|+||||+++.++..++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 446679999999999999999999999876654
No 304
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.12 E-value=0.0011 Score=62.64 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
-++.+++.+..++.. ....||+||||||||+++-.+...+ +..++.+.
T Consensus 190 LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp CCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 467778888877643 2357999999999998665544333 44444443
No 305
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.11 E-value=0.0025 Score=61.09 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+..++|.||+|+||||+++.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 567899999999999999999864
No 306
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.11 E-value=0.00042 Score=55.78 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEeccch
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSAI 102 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~~~ 102 (292)
..+..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999998774 45666664433
No 307
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.06 E-value=0.0016 Score=66.26 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.+++..
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 36778899999999999999999999765
No 308
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.05 E-value=0.017 Score=46.29 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 28 NVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
..+|+++.-.++..+.|.+.--. +. .+...... +..+..+++.+|+|+|||..+-..+-
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHHH
Confidence 35688875556666666553211 10 01111111 11246799999999999986554443
No 309
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.04 E-value=0.0043 Score=50.01 Aligned_cols=54 Identities=17% Similarity=0.046 Sum_probs=31.7
Q ss_pred CCCccccccccHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
+..+|+++--.+...+.+...--... .+...... +..++.+++.+|+|+|||..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHH
Confidence 44678888655666666665421101 11111111 12356799999999999986
No 310
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.04 E-value=0.0004 Score=59.09 Aligned_cols=34 Identities=35% Similarity=0.606 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
+..++|.||+|+|||+++..+|..++..++.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999877666543
No 311
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00047 Score=60.20 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34567789999999999999999999876
No 312
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.02 E-value=0.00016 Score=66.31 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEeccc-hhcc--------c---cChHHHHHHHHHHHhhhCCCEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-IIDK--------Y---IGESARLIREMFGYARDHQPCII 129 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~~-~~~~--------~---~~~~~~~~~~~~~~~~~~~~~il 129 (292)
..+.+++|.||+|+||||++++++..+.. ..+.+.... +... . .+.....+...+..+....|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 34667999999999999999999988743 344443221 1100 0 00001123344555566789999
Q ss_pred EEccc
Q 022768 130 FMDEI 134 (292)
Q Consensus 130 ~lDe~ 134 (292)
++.|+
T Consensus 338 ivgEi 342 (511)
T 2oap_1 338 IVGEV 342 (511)
T ss_dssp EESCC
T ss_pred EeCCc
Confidence 99997
No 313
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.02 E-value=0.0015 Score=55.54 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSS 100 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~ 100 (292)
++..++|.|++|+||||++..+|..+ |..+..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46789999999999999999999765 4456555543
No 314
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.01 E-value=0.0018 Score=52.05 Aligned_cols=34 Identities=9% Similarity=-0.095 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
++.-.+++|+.|+||||.+-.++... +..++.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34556788999999999887777655 55555554
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.01 E-value=0.00021 Score=58.39 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH-HhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIA-SNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la-~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++ ....
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4667789999999999999999999 7653
No 316
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.01 E-value=0.00072 Score=60.41 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
.+..++|+|+||+||||+++.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3566889999999999999999999875544
No 317
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.00036 Score=58.93 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
+..|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4468899999999999999999 577665443
No 318
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.0061 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.5
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la 87 (292)
+..+++.||+|+|||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 6789999999999998766554
No 319
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.97 E-value=0.00062 Score=54.95 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
..+.|.|++|+||||+++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999998766543
No 320
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.97 E-value=0.00052 Score=58.51 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
..++|.||+|+|||+++..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999998766655443
No 321
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.96 E-value=0.0015 Score=63.92 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+.++..+.|.||+|+|||||++.++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677899999999999999999994
No 322
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.96 E-value=0.00043 Score=59.78 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
..++|.||+|+|||++++.++..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999866555443
No 323
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.96 E-value=0.00069 Score=59.32 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--cEEEEecc-chh-----cc--ccC-h-------HHHHHHHHHHHhhhC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSS-AII-----DK--YIG-E-------SARLIREMFGYARDH 124 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~--~~~~~~~~-~~~-----~~--~~~-~-------~~~~~~~~~~~~~~~ 124 (292)
+.++..++|.||+|+||||++++++..... ..+.+... ++. .. +.. + ....+...+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 456788999999999999999999987743 33444321 110 00 111 0 111234555556667
Q ss_pred CCEEEEEcccc
Q 022768 125 QPCIIFMDEID 135 (292)
Q Consensus 125 ~~~il~lDe~d 135 (292)
.|..++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 78899999974
No 324
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.93 E-value=0.00048 Score=62.37 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+..+..++|.|++|+||||+++.++..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567789999999999999999999876
No 325
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.92 E-value=0.0073 Score=48.84 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCCCccccccccH-HHHHHHHHHhh-ccc-CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 25 DPGNVSYSAVGGLS-DQIRELRESIE-LPL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 25 ~~~~~~~~~l~g~~-~~~~~l~~~l~-~~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
+.|..+|.+..+.. +..+.+.+.-- .+. .+...... +..+..+++.+|+|+|||..+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPI--ILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHH
Confidence 44556788754544 34455544321 100 01111111 123567999999999999754
No 326
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.92 E-value=0.00047 Score=54.73 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
+..++|.||+|+|||+++..+++..+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 56799999999999999999999865 4443
No 327
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.89 E-value=0.00049 Score=57.49 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+.++..+.|.||+|+|||||++.++....
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357788899999999999999999998764
No 328
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.88 E-value=0.0027 Score=52.40 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=29.6
Q ss_pred CCccccccccHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
..+|+++.-.+...+.+...-.... .+...... +..++.+++.+|+|+|||...
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL--ALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEEcCCCCCchhHh
Confidence 3568887544555555544321000 01111111 123567999999999999864
No 329
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.88 E-value=0.0006 Score=57.91 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-CCcEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI-DANFL 95 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l-~~~~~ 95 (292)
..++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458899999999999999999864 44443
No 330
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.87 E-value=0.00035 Score=57.68 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35778889999999999999999999765
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.86 E-value=0.00042 Score=56.02 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++....
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56688899999999999999999998663
No 332
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.84 E-value=0.00054 Score=57.07 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999766
No 333
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.83 E-value=0.0034 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++..+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999866
No 334
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.83 E-value=0.00084 Score=52.56 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=28.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCcEEEEeccch
Q 022768 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (292)
Q Consensus 69 vll~G~~G~GKT~l~~~la~~l~~~~~~~~~~~~ 102 (292)
++|+|++|+|||++|..++.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 789999999999999999988 878888776543
No 335
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.83 E-value=0.00078 Score=57.74 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45677889999999999999999999774
No 336
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.83 E-value=0.00049 Score=57.64 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
.+.++..+.|.||+|+|||||++.++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3577888999999999999999999986
No 337
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.83 E-value=0.015 Score=49.32 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
++..+.+.|++|+||||++..+|..+ +..+..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46678889999999999999999765 445554443
No 338
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.82 E-value=0.00042 Score=57.82 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35778889999999999999999999765
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.82 E-value=0.0005 Score=56.19 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+||||+++.++..+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56788899999999999999999998764
No 340
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.82 E-value=0.00057 Score=56.32 Aligned_cols=28 Identities=36% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.++..+.|.||+|+||||+++.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999765
No 341
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.81 E-value=0.0042 Score=53.79 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..+..+.|.|+||+||||+++.++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5667789999999999999999999765
No 342
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.80 E-value=0.00044 Score=57.34 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+.++..+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567888999999999999999999985
No 343
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.79 E-value=0.00073 Score=56.54 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||++.++...
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35678889999999999999999999765
No 344
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.001 Score=54.28 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+..++|.|++|+||||+++.++..++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567788999999999999999999986
No 345
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.76 E-value=0.0008 Score=59.35 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
...++|.||+|+|||+++..++..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346789999999999999999999876665543
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.76 E-value=0.0043 Score=52.71 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
+..+++.|++|+||||++..+|..+ +..+..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5678889999999999999999766 5566655544
No 347
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.75 E-value=0.0079 Score=47.66 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.5
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
++.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 467999999999999863
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.75 E-value=0.0052 Score=56.06 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
.+..|+|.|++|+||||++..++..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35678899999999999999999765 556665555
No 349
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.73 E-value=0.00069 Score=57.12 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788899999999999999999998663
No 350
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.73 E-value=0.0043 Score=58.84 Aligned_cols=21 Identities=48% Similarity=0.563 Sum_probs=19.0
Q ss_pred CCCCceEEEEcCCCChHHHHH
Q 022768 63 IKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~ 83 (292)
+.++..+.|.||+|+|||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 567888999999999999996
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.71 E-value=0.0013 Score=55.74 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+..+.|.|++|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456788999999999999999998875
No 352
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.71 E-value=0.0033 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHH
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la 87 (292)
.+.++..+.|.||+|+||||+++.+.
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 35678889999999999999997543
No 353
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.70 E-value=0.0056 Score=48.78 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999988776654
No 354
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.70 E-value=0.0072 Score=48.55 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.5
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
+..+++.+|+|+|||..+
T Consensus 41 ~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp TCCEEEECCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 467999999999999864
No 355
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.69 E-value=0.0014 Score=52.32 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
..|.|.|++|+|||++++.+|..+|.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368899999999999999999999999874
No 356
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.66 E-value=0.0013 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCcEEEE
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~~~~~~ 97 (292)
.+-|.|+||+||||+++.++..++.+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 478999999999999999999998877654
No 357
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.65 E-value=0.0017 Score=60.62 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEeccch
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAI 102 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~~~ 102 (292)
.+..|+|.|.+|+||||+++.+++.+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 888888764433
No 358
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.62 E-value=0.007 Score=47.99 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.8
Q ss_pred CceEEEEcCCCChHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLAR 84 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~ 84 (292)
++.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4679999999999997543
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.60 E-value=0.014 Score=50.75 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
....+.|.|+||+||||++..++..+ +..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 35578899999999999999998765 44444433
No 360
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.60 E-value=0.0051 Score=56.47 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEeccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSA 101 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~~~ 101 (292)
+..|+++|.||+||||+++.+++.++ .....++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 45688999999999999999999884 3444455443
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.60 E-value=0.00057 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.|.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 362
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.58 E-value=0.019 Score=46.79 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
+..+|+++--.++..+.+...--. +. .+...... +..+..+++.+|+|+|||..+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHH
Confidence 446799985555555666543211 10 01111111 122567999999999999764
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.58 E-value=0.00098 Score=53.62 Aligned_cols=25 Identities=44% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
++..+.|.||+|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3677999999999999999999975
No 364
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.56 E-value=0.007 Score=54.18 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
+..++|.|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999999866 4556555544
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.56 E-value=0.0015 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
++..+.|.||+|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46678999999999999999999876
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.54 E-value=0.0008 Score=57.03 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+||||+++.++...
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35678889999999999999999999865
No 367
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.54 E-value=0.0015 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+.+++|.|++|+||||++..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 678999999999999999999885
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.53 E-value=0.0016 Score=55.61 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+..+.|.||+|+||||+++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566788999999999999999999775
No 369
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.53 E-value=0.0056 Score=50.10 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=30.5
Q ss_pred CCCCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 25 DPGNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
+.|..+|.++--.++..+.+.+.--. +. .+...... +..+..+++.+|+|+|||...
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV--ALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHH--HHHTCCEEEEECTTSCHHHHH
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCcCHHHHHH
Confidence 34557788764445445555442110 00 00111111 112567999999999999864
No 370
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.52 E-value=0.0013 Score=55.84 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CcEEEEeccch
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAI 102 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~---~~~~~~~~~~~ 102 (292)
...|.|.|++|+||||+++.++..++ ..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 34588999999999999999999775 33444554444
No 371
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.52 E-value=0.024 Score=45.93 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCccccccccHHHHHHHHHHhhcccC--ChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPLM--NPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
..+|+++.-.+...+.+.+.-..... +...... +..++.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHHH
Confidence 35688875555556666543211000 0111111 123567999999999999853
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.50 E-value=0.0019 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...+.|.|++|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999865
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.00093 Score=55.79 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+. +..+.|.||+|+||||+++.++...
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 356 7789999999999999999999876
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.48 E-value=0.0018 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
..+|+||+|+||||++++++..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998775
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.48 E-value=0.0046 Score=53.05 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+..+.|.||+|+||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678999999999999999998875
No 376
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.47 E-value=0.018 Score=46.68 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=30.2
Q ss_pred CCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
+..+|+++.-.++..+.+.+.--. +. .+...... +..+..+++.+|+|+|||...
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHH
Confidence 346788875555555666543211 10 01111111 123567999999999999763
No 377
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.47 E-value=0.0029 Score=54.35 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~~ 100 (292)
..++..++|.|++|+||||++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3557789999999999999999999766 4555555543
No 378
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.46 E-value=0.0021 Score=51.61 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHH-HHHHHHHhc--CCcEEEE
Q 022768 66 PKGVLLYGPPGTGKTL-LARAIASNI--DANFLKV 97 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~-l~~~la~~l--~~~~~~~ 97 (292)
+.-.+++|+-|+|||| +++.+.+.. +..++.+
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 5567889999999999 556654433 4444433
No 379
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.42 E-value=0.0021 Score=59.36 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEeccch
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSAI 102 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~~~ 102 (292)
.++..+.|+|++|+||||+++.++..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4577899999999999999999999885 23444555444
No 380
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.41 E-value=0.002 Score=56.49 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=26.5
Q ss_pred CCC--CceEEEEcCCCChHHHHHHHHHHhcCCc
Q 022768 63 IKP--PKGVLLYGPPGTGKTLLARAIASNIDAN 93 (292)
Q Consensus 63 ~~~--~~~vll~G~~G~GKT~l~~~la~~l~~~ 93 (292)
+.+ +..+.|.||+|+|||||++.++..+...
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445 6789999999999999999999987654
No 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.41 E-value=0.011 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...|+|.|++|+|||+++..++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4569999999999999999998643
No 382
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l 90 (292)
++.|.||+|+||||+++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999865
No 383
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.37 E-value=0.026 Score=45.74 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
+.-.+++|+-|+||||.+-..+... +..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5557788999999998665555433 44444443
No 384
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.37 E-value=0.011 Score=52.86 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCcEEEEeccc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSA 101 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l----~~~~~~~~~~~ 101 (292)
++..+++.|++|+||||++-.+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45678899999999999998888655 66677666654
No 385
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0015 Score=58.98 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 62 ~~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.++..+.|.||+|+|||||+|.++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35678889999999999999999999865
No 386
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.31 E-value=0.0034 Score=57.33 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+..++|.|.+|+||||+++++++.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999974
No 387
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.30 E-value=0.0029 Score=51.37 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
...|.|.|++|+|||++++.+|..++.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3467889999999999999999999988764
No 388
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.29 E-value=0.0023 Score=51.35 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
..|.|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999988 888877655
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.26 E-value=0.0028 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999876
No 390
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.26 E-value=0.031 Score=48.29 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...+..+.|.|++|+||||++..++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556778999999999999999998764
No 391
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.26 E-value=0.035 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 022768 67 KGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~ 88 (292)
..+++.+|+|+|||..+-..+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5899999999999987654443
No 392
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.23 E-value=0.011 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...|+|.|.+|+|||+++..+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999854
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0017 Score=50.45 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 68 GVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+.|.|++|+||||+++.++..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998743
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.23 E-value=0.0036 Score=54.39 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
+..+..+.|.||+|+||||+++.+++.......
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 466888999999999999999999998866543
No 395
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.22 E-value=0.0058 Score=49.31 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEE
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~ 95 (292)
.+..|.|.|++|+||||.++.++..++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 4667889999999999999999999986443
No 396
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.19 E-value=0.0048 Score=55.34 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCcE
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~~~~ 94 (292)
+.++..+.|.||+|+|||||++.+++......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 56788899999999999999999999886544
No 397
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.029 Score=47.73 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCcEEEEe
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~ 98 (292)
+..+++.+|+|+|||..+-..+...+...+.+.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 457999999999999876666555555555444
No 398
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.19 E-value=0.0024 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCCce--EEEEcCCCChHHHHHHHHHHh
Q 022768 63 IKPPKG--VLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 63 ~~~~~~--vll~G~~G~GKT~l~~~la~~ 89 (292)
+.++.. +.|.||+|+|||||++.++..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 566777 999999999999999999875
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.18 E-value=0.0041 Score=57.78 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC----CcEEEEeccc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSA 101 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~----~~~~~~~~~~ 101 (292)
+..|+|.|.+|+||||+++.+++.++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 45688999999999999999999986 6777776444
No 400
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.17 E-value=0.064 Score=50.51 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCcEEEEec
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~~~~ 99 (292)
.+..+++.||.|+|||+.+-..+.+-+..++.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 46679999999999997655444443444544443
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.14 E-value=0.0065 Score=54.65 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+..++|.|++|+|||+|+..++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 46679999999999999999887654
No 402
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.14 E-value=0.091 Score=44.44 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=31.8
Q ss_pred CCCccccccccHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
+..+|.++.-.+...+.|...--... .+......+-..+++.+++++|+|+|||...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 44678888555555566554211000 0111222211123578999999999999753
No 403
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.14 E-value=0.0031 Score=56.09 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+..+.|.||+|+||||+++.++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 447889999999999999999974
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.0045 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
...++|.|++|+||||++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 405
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.10 E-value=0.043 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHH
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAI 86 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~l 86 (292)
..+.++++.||+|+|||+.+-..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHHH
Confidence 44788999999999999987433
No 406
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.09 E-value=0.0049 Score=55.09 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=20.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...+..++.|+||+|||+++..++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 34455788999999999999887753
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.09 E-value=0.004 Score=50.71 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCcEEE
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~~~~~ 96 (292)
.++..+.|.|+.|+||||+++.++.. +..+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 45667889999999999999999987 444433
No 408
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.09 E-value=0.0038 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.-|.|.|++|+||||+++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999877
No 409
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0038 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+..+.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999984
No 410
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.06 E-value=0.13 Score=44.67 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=30.4
Q ss_pred CccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 022768 29 VSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87 (292)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~la 87 (292)
.+|+++.-.+...+.|...--. +. .+...... +..+..+++.+|+|+|||..+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHH--HTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCcEEEECCCCCcHHHHHHHHH
Confidence 4577765455555555553211 00 01111111 1225679999999999998654333
No 411
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.06 E-value=0.014 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+..|+++|.||+||||+++.+++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999874
No 412
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.002 Score=53.61 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+..|+|.|++|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356688999999999999999999984
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.03 E-value=0.0044 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.-|.|.|++|+||||+++.++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998874
No 414
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0095 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
....+++.|++|+|||+++..++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999998754
No 415
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.01 E-value=0.0037 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+.-|.|.|++|+||||+++.++..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346678899999999999999999887
No 416
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.99 E-value=0.056 Score=47.48 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=29.7
Q ss_pred CCccccccccHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~ 84 (292)
..+|+++.-.+...+.+...-.... .+...... +..+..+++.+|+|+|||..+-
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP--CIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEECCCSCSSSHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH--HhCCCCEEEECCCCCcccHHHH
Confidence 3567776555555555554311100 01111111 1225679999999999998743
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.99 E-value=0.015 Score=48.46 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+.|.|++|+||||+++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 418
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.96 E-value=0.0038 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+.|.|++|+||||+++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999999754
No 419
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.96 E-value=0.0044 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..++|.|++|+||||+++.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999753
No 420
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.93 E-value=0.0074 Score=56.73 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..++|+||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999877766543
No 421
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.91 E-value=0.0021 Score=51.14 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 61 VGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 61 ~~~~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+.+.++..+.|.|++|+||||+++.++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44667788999999999999999988754
No 422
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.90 E-value=0.09 Score=46.19 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~ 85 (292)
+..+|+++--.++..+.|...--. +. .+...... +..+..+++.+|+|+|||..+-.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCCchHHHHH
Confidence 345788875556666666554211 10 11111211 12256799999999999975543
No 423
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.88 E-value=0.089 Score=45.70 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.7
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~ 85 (292)
+..+++.+|+|+|||..+-.
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 47899999999999986543
No 424
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.87 E-value=0.14 Score=47.54 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.8
Q ss_pred CCceEEEEcCCCChHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l 82 (292)
.+..+++.+|+|+|||..
T Consensus 59 ~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHH
Confidence 467899999999999984
No 425
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.049 Score=45.06 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
++.+++++|+|+|||..+
T Consensus 91 ~~~~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAF 108 (262)
T ss_dssp TCCCEECCCTTSCHHHHH
T ss_pred CCcEEEEccCCCCchHHH
Confidence 457999999999999864
No 426
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.84 E-value=0.024 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+.|.|++|+||||+++.++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 38899999999999999998643
No 427
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.83 E-value=0.15 Score=45.97 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=31.2
Q ss_pred CCccccccccHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 28 NVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
..+|.++.-.++..+.|...--... .+......+-...+..+++.||+|+|||...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4578887656665565554211000 0112222221123578999999999999863
No 428
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.81 E-value=0.0061 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+...+|+||.|+|||+++.+++-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998755
No 429
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.78 E-value=0.093 Score=46.80 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=29.9
Q ss_pred CCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l 82 (292)
|-.+|+++--.+...+.|...--. |. .+...... +..++.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~--i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPV--ISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEECCCCCCchHH
Confidence 446788875445555555443110 00 00111111 12367899999999999984
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.76 E-value=0.013 Score=50.20 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..++|.|++|+||||+++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999764
No 431
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.76 E-value=0.073 Score=46.54 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCCccccccccHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 022768 27 GNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (292)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~G~GKT~l~~~ 85 (292)
+..+|+++.-.++..+.|...--. +. .+...... +..+..+++.+|+|+|||..+-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEECCCCcHHHHHHHH
Confidence 345788886556666666553211 00 01111111 11245699999999999986543
No 432
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.75 E-value=0.042 Score=49.10 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.8
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
+..++++||+|+|||..+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 467999999999999965
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.74 E-value=0.07 Score=42.38 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 434
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.74 E-value=0.0064 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 022768 68 GVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~ 89 (292)
.+++.|++|+|||++++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.73 E-value=0.019 Score=51.10 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEec
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~~ 99 (292)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 46678889999999999999999876 445555443
No 436
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.71 E-value=0.012 Score=51.99 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCcEEEEe
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l---~~~~~~~~ 98 (292)
.+.+++|.|++|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999999998754 44444444
No 437
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.69 E-value=0.0079 Score=48.76 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
..+..|.|.|++|+||||+++.++..++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34666888999999999999999987754
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.69 E-value=0.0059 Score=47.09 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+..++|.|++|+|||+|++.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 557999999999999999999864
No 439
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.68 E-value=0.014 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...++|.|.+|+||||++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999875
No 440
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.0083 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...++|.|++|+|||+++..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999764
No 441
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.65 E-value=0.047 Score=44.48 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.5
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 567999999999999863
No 442
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.64 E-value=0.0068 Score=45.97 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...+++.|++|+|||++++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 443
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.62 E-value=0.078 Score=43.77 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 022768 68 GVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~ 89 (292)
.++|.|.+|+||||++..+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999864
No 444
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.61 E-value=0.0071 Score=54.76 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
+.+ ..+.|.||+|+||||+++.++..+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 556 7889999999999999999998763
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.61 E-value=0.0072 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+..+.|.||+|+|||||++.++....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 466799999999999999999997654
No 446
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.60 E-value=0.062 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...|.|.|.||+|||||+..+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 445889999999999999999864
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.60 E-value=0.0068 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|++|+|||++++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 448
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.59 E-value=0.037 Score=54.05 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=28.8
Q ss_pred CEEEEEcccccccCCcCCCCCcchHHHHHHHHHHHHHhhCCCCCCCeEEEEEeCCC
Q 022768 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (292)
Q Consensus 126 ~~il~lDe~d~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~t~~~~ 181 (292)
|.+++|||- +++-+......+.+++..+.. .+..+|+++++.
T Consensus 827 p~LLILDEP----------TsGLD~~~~~~L~~lL~~L~~----~G~TVIvI~HdL 868 (916)
T 3pih_A 827 RTLYILDEP----------TVGLHFEDVRKLVEVLHRLVD----RGNTVIVIEHNL 868 (916)
T ss_dssp SEEEEEEST----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECCCH
T ss_pred CCEEEEECC----------CCCCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCH
Confidence 579999995 344477777778877776642 144577777764
No 449
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.59 E-value=0.061 Score=43.28 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...|+|.|++|+|||+++..++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.57 E-value=0.18 Score=41.91 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|.+|+||||++..+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 451
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.55 E-value=0.01 Score=45.18 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
.....+++.|++|+|||+++..+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999763
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.54 E-value=0.014 Score=50.72 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..+.|.|+||+||||+++.++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999754
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.54 E-value=0.0058 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 022768 68 GVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~ 88 (292)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 454
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.52 E-value=0.0086 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998864
No 455
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.52 E-value=0.013 Score=56.61 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..++|+||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999877776543
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.51 E-value=0.009 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+.-|.|.|++|+||||.++.++..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.49 E-value=0.0099 Score=45.61 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
....|++.|++|+|||++++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999863
No 458
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.48 E-value=0.089 Score=45.75 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=31.2
Q ss_pred CCCCccccccccHHHHHHHHHHhhcccC--ChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 022768 26 PGNVSYSAVGGLSDQIRELRESIELPLM--NPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~vll~G~~G~GKT~l~ 83 (292)
.+..+|+++--.++..+.+...--..+. +...... +..+..+++.+|+|+|||..+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCCEEECCCSSHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHH
Confidence 3456788875555555666554211110 1111111 112457999999999999864
No 459
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.12 Score=40.01 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..|+|.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 460
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.47 E-value=0.0086 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 022768 68 GVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~l 90 (292)
.+++.|++|+|||+++..++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 461
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.44 E-value=0.0095 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||++++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 462
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0096 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+++.|++|+|||++++.+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 463
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.43 E-value=0.085 Score=43.15 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.3
Q ss_pred CceEEEEcCCCChHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~ 83 (292)
++.+++.+|+|+|||..+
T Consensus 60 ~~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAF 77 (253)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 457999999999999853
No 464
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.41 E-value=0.0097 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..+++.|++|+|||++++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 465
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.067 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+..++++||.|+|||..+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 56899999999999987655443
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.40 E-value=0.0095 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~ 91 (292)
.+..+.|.||+|+|||||++.++ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46678999999999999999999 653
No 467
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.40 E-value=0.012 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
+.+++|.|++|+|||+++..+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 678999999999999999999875
No 468
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.38 E-value=0.21 Score=46.01 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCceEEEEcCCCChHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLL 82 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l 82 (292)
.++.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 467899999999999974
No 469
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.38 E-value=0.01 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||++++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 470
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.38 E-value=0.0089 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|++|+|||++++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 471
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.37 E-value=0.01 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...+++.|++|+|||++++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999864
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.36 E-value=0.01 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...+++.|++|+|||++++.+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999988643
No 473
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.33 E-value=0.01 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 474
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.33 E-value=0.01 Score=45.38 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999854
No 475
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.33 E-value=0.011 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||++++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.31 E-value=0.013 Score=45.85 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
....+++.|++|+|||+++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999864
No 477
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.017 Score=55.82 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=17.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 022768 67 KGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~ 88 (292)
..++|+||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998766554
No 478
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.01 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 479
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.28 E-value=0.14 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=18.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+..+++.+|+|+|||..+-..+.
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHH
Confidence 45799999999999987655553
No 480
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.26 E-value=0.021 Score=50.02 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 63 ~~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
+..+..++|.||+|+|||++++.+++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5668899999999999999999998854
No 481
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.24 E-value=0.012 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 022768 68 GVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~~ 89 (292)
.+++.|++|+|||+++..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 482
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.24 E-value=0.012 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..+++.|++|+|||+++..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 483
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.23 E-value=0.0096 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 022768 66 PKGVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~ 88 (292)
+.+++|.|++|+|||+++..+..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 67799999999999999988765
No 484
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.20 E-value=0.11 Score=49.56 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=16.9
Q ss_pred CCceEEEEcCCCChHHHHH
Q 022768 65 PPKGVLLYGPPGTGKTLLA 83 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~ 83 (292)
.+.++++.||+|+|||+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 3678999999999999876
No 485
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.20 E-value=0.012 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 486
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.18 E-value=0.0099 Score=50.52 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
.+..+.|.||+|+||||+++.++.....
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 3567889999999999999999986643
No 487
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.18 E-value=0.012 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...+++.|++|+|||++++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999853
No 488
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.17 E-value=0.012 Score=44.64 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 022768 68 GVLLYGPPGTGKTLLARAIAS 88 (292)
Q Consensus 68 ~vll~G~~G~GKT~l~~~la~ 88 (292)
.+++.|++|+|||+++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 489
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.16 E-value=0.013 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...+++.|++|+|||++++.+...-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998643
No 490
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.015 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh
Q 022768 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 65 ~~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
....++|.|++|+|||++++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 491
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.14 E-value=0.15 Score=41.82 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...|+|.|++|+||||++..+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999854
No 492
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.13 E-value=0.012 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...+++.|++|+|||++++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 493
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.12 E-value=0.063 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
...|++.|.+|+|||+++.++...-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.10 E-value=0.0039 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 022768 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 64 ~~~~~vll~G~~G~GKT~l~~~la~~l 90 (292)
.++..+.|.||+|+|||||++.++...
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 457789999999999999999998754
No 495
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.10 E-value=0.014 Score=45.62 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 496
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.09 E-value=0.014 Score=46.51 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~l~~ 92 (292)
+...+|+||+|+|||+++.++.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356789999999999999999877654
No 497
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.09 E-value=0.016 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 022768 66 PKGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 66 ~~~vll~G~~G~GKT~l~~~la~~ 89 (292)
...|+|.|++|+|||+|+..++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 498
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.08 E-value=0.013 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|++|+|||+++..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 499
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.08 E-value=0.014 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 022768 67 KGVLLYGPPGTGKTLLARAIASNI 90 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~l 90 (292)
..|++.|++|+|||+++..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.07 E-value=0.04 Score=45.58 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 022768 67 KGVLLYGPPGTGKTLLARAIASN 89 (292)
Q Consensus 67 ~~vll~G~~G~GKT~l~~~la~~ 89 (292)
..++|.|++|+|||+++..+...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999863
Done!