Query 022769
Match_columns 292
No_of_seqs 318 out of 2222
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 4.2E-28 9.1E-33 217.2 24.3 187 102-288 12-198 (286)
2 KOG2943 Predicted glyoxalase [ 99.9 9.2E-26 2E-30 187.7 12.7 176 104-292 7-193 (299)
3 TIGR03211 catechol_2_3 catecho 99.9 1.7E-21 3.7E-26 175.7 20.7 155 112-279 2-180 (303)
4 TIGR02295 HpaD 3,4-dihydroxyph 99.9 6.5E-21 1.4E-25 171.1 21.8 160 112-287 2-179 (294)
5 TIGR03213 23dbph12diox 2,3-dih 99.9 6.2E-21 1.3E-25 170.8 19.3 150 112-275 1-173 (286)
6 TIGR00068 glyox_I lactoylgluta 99.8 1.5E-19 3.2E-24 146.6 17.9 137 110-246 13-149 (150)
7 COG2514 Predicted ring-cleavag 99.8 8E-19 1.7E-23 150.3 17.1 151 111-273 7-197 (265)
8 PRK10291 glyoxalase I; Provisi 99.8 1.1E-18 2.3E-23 137.8 16.4 125 120-244 2-126 (129)
9 PLN02367 lactoylglutathione ly 99.8 4.3E-18 9.4E-23 145.4 17.7 130 110-241 71-225 (233)
10 TIGR03213 23dbph12diox 2,3-dih 99.8 5.5E-18 1.2E-22 151.7 16.3 159 70-238 99-263 (286)
11 cd07233 Glyoxalase_I Glyoxalas 99.8 2.2E-17 4.7E-22 128.0 16.3 120 115-236 1-121 (121)
12 PLN03042 Lactoylglutathione ly 99.8 2.6E-17 5.6E-22 137.5 17.4 128 110-239 23-175 (185)
13 cd07243 2_3_CTD_C C-terminal d 99.8 1.9E-17 4.2E-22 133.2 16.0 118 112-238 4-125 (143)
14 COG2514 Predicted ring-cleavag 99.8 1.8E-18 4E-23 148.0 10.6 158 51-236 67-264 (265)
15 cd07265 2_3_CTD_N N-terminal d 99.8 1.5E-17 3.2E-22 129.7 14.9 115 112-238 2-119 (122)
16 cd08360 MhqB_like_C C-terminal 99.8 2.5E-17 5.4E-22 130.9 15.8 118 113-240 2-122 (134)
17 cd07257 THT_oxygenase_C The C- 99.8 7E-18 1.5E-22 137.3 12.8 119 114-239 1-126 (153)
18 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 7.2E-17 1.6E-21 129.2 16.7 123 112-238 1-141 (142)
19 cd08358 Glo_EDI_BRP_like_21 Th 99.7 8.6E-17 1.9E-21 126.3 16.3 115 113-237 1-126 (127)
20 PRK11478 putative lyase; Provi 99.7 6.7E-17 1.5E-21 127.0 15.5 123 111-237 3-128 (129)
21 TIGR03645 glyox_marine lactoyl 99.7 1.7E-16 3.7E-21 130.4 16.3 124 113-239 3-152 (162)
22 TIGR03211 catechol_2_3 catecho 99.7 1.1E-16 2.3E-21 144.5 16.5 159 71-238 100-265 (303)
23 TIGR02295 HpaD 3,4-dihydroxyph 99.7 2.1E-16 4.5E-21 141.9 18.2 156 71-239 97-257 (294)
24 cd07237 BphC1-RGP6_C_like C-te 99.7 1.6E-16 3.5E-21 129.5 15.8 122 110-239 5-132 (154)
25 cd08342 HPPD_N_like N-terminal 99.7 3.8E-16 8.1E-21 124.5 17.2 120 115-241 1-126 (136)
26 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.3E-16 5.1E-21 122.4 15.6 121 113-237 2-125 (125)
27 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 2.1E-16 4.5E-21 123.0 14.8 118 114-235 1-124 (125)
28 PLN02300 lactoylglutathione ly 99.7 4.9E-16 1.1E-20 139.2 18.3 144 96-239 133-279 (286)
29 PF00903 Glyoxalase: Glyoxalas 99.7 1.1E-16 2.3E-21 124.6 12.2 120 114-235 1-128 (128)
30 PRK04101 fosfomycin resistance 99.7 4.1E-16 8.9E-21 124.7 15.9 116 112-238 2-119 (139)
31 cd09013 BphC-JF8_N_like N-term 99.7 3.8E-16 8.2E-21 121.6 15.2 114 111-239 3-119 (121)
32 cd09014 BphC-JF8_C_like C-term 99.7 4.9E-16 1.1E-20 128.2 16.6 123 111-239 3-128 (166)
33 cd08347 PcpA_C_like C-terminal 99.7 3.9E-16 8.5E-21 127.6 15.7 119 114-241 1-123 (157)
34 cd07258 PpCmtC_C C-terminal do 99.7 3.1E-16 6.7E-21 125.9 14.8 112 116-239 1-115 (141)
35 cd07266 HPCD_N_class_II N-term 99.7 2.8E-16 6E-21 122.1 14.1 114 112-238 2-118 (121)
36 cd07255 Glo_EDI_BRP_like_12 Th 99.7 7.6E-16 1.7E-20 120.2 15.8 118 113-241 1-122 (125)
37 cd07256 HPCD_C_class_II C-term 99.7 6.6E-16 1.4E-20 126.8 16.1 118 113-239 2-124 (161)
38 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1E-15 2.2E-20 118.8 14.9 118 112-237 1-124 (125)
39 cd08361 PpCmtC_N N-terminal do 99.7 6.1E-16 1.3E-20 121.3 13.2 112 112-239 4-120 (124)
40 cd07252 BphC1-RGP6_N_like N-te 99.7 9.4E-16 2E-20 119.4 13.9 113 113-239 1-118 (120)
41 cd08343 ED_TypeI_classII_C C-t 99.7 2.1E-15 4.6E-20 119.2 15.7 116 116-240 1-119 (131)
42 TIGR03081 metmalonyl_epim meth 99.7 8.7E-16 1.9E-20 120.1 13.1 119 114-237 1-128 (128)
43 cd07240 ED_TypeI_classII_N N-t 99.7 2.4E-15 5.2E-20 115.8 15.1 111 113-238 1-114 (117)
44 cd08364 FosX FosX, a fosfomyci 99.7 2.7E-15 5.9E-20 118.8 15.6 118 112-238 2-122 (131)
45 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 3.5E-15 7.6E-20 117.0 16.1 116 114-237 1-127 (128)
46 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.1E-15 4.5E-20 115.9 14.6 117 117-237 1-119 (119)
47 cd07239 BphC5-RK37_C_like C-te 99.7 2.3E-15 5E-20 121.3 15.1 113 113-239 3-118 (144)
48 cd08363 FosB FosB, a fosfomyci 99.7 2.4E-15 5.2E-20 119.1 14.8 113 115-238 1-115 (131)
49 cd08346 PcpA_N_like N-terminal 99.7 2.7E-15 5.8E-20 116.7 14.8 120 114-236 1-126 (126)
50 cd08362 BphC5-RrK37_N_like N-t 99.7 3.3E-15 7.3E-20 115.7 14.4 113 112-238 1-117 (120)
51 cd07247 SgaA_N_like N-terminal 99.7 7.1E-15 1.5E-19 112.9 15.3 114 115-237 1-114 (114)
52 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 2.1E-15 4.7E-20 114.5 12.2 113 115-235 1-114 (114)
53 cd07267 THT_Oxygenase_N N-term 99.6 6.3E-15 1.4E-19 113.5 14.4 110 112-238 1-110 (113)
54 cd08348 BphC2-C3-RGP6_C_like T 99.6 2.3E-14 5E-19 113.4 17.1 120 114-241 1-123 (134)
55 cd08351 ChaP_like ChaP, an enz 99.6 1.1E-14 2.4E-19 113.8 14.8 111 113-238 3-121 (123)
56 cd07249 MMCE Methylmalonyl-CoA 99.6 7.8E-15 1.7E-19 114.5 13.9 119 115-237 1-128 (128)
57 TIGR01263 4HPPD 4-hydroxypheny 99.6 5.7E-14 1.2E-18 129.5 20.8 158 113-275 1-191 (353)
58 cd09011 Glo_EDI_BRP_like_23 Th 99.6 1E-14 2.2E-19 113.4 13.4 114 113-238 1-119 (120)
59 PRK06724 hypothetical protein; 99.6 2.1E-14 4.5E-19 113.4 14.8 111 112-238 5-123 (128)
60 cd08354 Glo_EDI_BRP_like_13 Th 99.6 3.6E-14 7.9E-19 110.0 14.1 113 115-237 1-121 (122)
61 cd08359 Glo_EDI_BRP_like_22 Th 99.6 3.5E-14 7.6E-19 109.8 14.0 111 117-237 4-119 (119)
62 cd07244 FosA FosA, a Fosfomyci 99.6 2.4E-14 5.1E-19 111.6 12.9 108 114-238 1-110 (121)
63 cd07262 Glo_EDI_BRP_like_19 Th 99.6 4.5E-14 9.7E-19 110.0 14.3 114 115-236 1-122 (123)
64 cd08355 Glo_EDI_BRP_like_14 Th 99.6 7.5E-14 1.6E-18 108.6 15.2 114 119-237 4-121 (122)
65 cd07264 Glo_EDI_BRP_like_15 Th 99.6 6.7E-14 1.4E-18 109.0 14.4 117 115-238 1-125 (125)
66 cd08357 Glo_EDI_BRP_like_18 Th 99.6 4.1E-14 8.9E-19 110.1 13.1 113 117-237 2-124 (125)
67 cd08345 Fosfomycin_RP Fosfomyc 99.6 4.7E-14 1E-18 108.0 13.0 109 117-238 1-111 (113)
68 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.2E-13 2.6E-18 105.8 14.7 108 118-238 4-111 (112)
69 cd07254 Glo_EDI_BRP_like_20 Th 99.6 9.6E-14 2.1E-18 107.7 14.3 111 116-238 3-117 (120)
70 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 2.6E-13 5.7E-18 105.0 16.3 116 118-238 5-122 (122)
71 PF12681 Glyoxalase_2: Glyoxal 99.6 1.2E-13 2.7E-18 104.7 13.5 108 120-236 1-108 (108)
72 cd08344 MhqB_like_N N-terminal 99.6 1.5E-13 3.2E-18 105.6 13.7 107 113-238 1-109 (112)
73 cd06587 Glo_EDI_BRP_like This 99.5 1.9E-13 4.1E-18 102.7 13.9 112 117-235 1-112 (112)
74 cd07261 Glo_EDI_BRP_like_11 Th 99.5 3.1E-13 6.8E-18 103.7 13.2 108 118-236 2-113 (114)
75 cd08349 BLMA_like Bleomycin bi 99.5 9.1E-13 2E-17 100.4 14.8 109 119-237 3-112 (112)
76 cd07235 MRD Mitomycin C resist 99.5 9E-13 1.9E-17 102.4 13.8 112 115-236 1-121 (122)
77 cd09012 Glo_EDI_BRP_like_24 Th 99.5 8.4E-13 1.8E-17 103.1 13.7 113 115-237 1-123 (124)
78 PF13669 Glyoxalase_4: Glyoxal 99.4 1.6E-12 3.5E-17 99.5 12.0 94 116-211 1-96 (109)
79 cd08350 BLMT_like BLMT, a bleo 99.4 4.9E-12 1.1E-16 98.2 14.1 107 118-238 6-119 (120)
80 cd08356 Glo_EDI_BRP_like_17 Th 99.4 6.6E-12 1.4E-16 96.7 12.9 103 119-237 6-113 (113)
81 COG3324 Predicted enzyme relat 99.4 1.9E-11 4.2E-16 94.8 14.9 117 114-238 9-125 (127)
82 cd07251 Glo_EDI_BRP_like_10 Th 99.4 5.8E-12 1.3E-16 97.2 11.8 110 118-237 2-120 (121)
83 PLN02875 4-hydroxyphenylpyruva 99.3 1.3E-10 2.9E-15 107.2 20.1 158 115-276 1-212 (398)
84 KOG2944 Glyoxalase [Carbohydra 99.3 4.5E-11 9.7E-16 94.4 11.9 118 113-238 41-168 (170)
85 cd07250 HPPD_C_like C-terminal 99.2 1.6E-10 3.5E-15 97.4 11.8 98 113-212 2-112 (191)
86 KOG0638 4-hydroxyphenylpyruvat 99.2 7.7E-11 1.7E-15 102.7 7.8 167 111-277 14-213 (381)
87 KOG2943 Predicted glyoxalase [ 99.2 1.1E-10 2.4E-15 98.1 8.2 170 61-239 79-271 (299)
88 COG3565 Predicted dioxygenase 99.0 4.3E-09 9.2E-14 78.7 10.8 116 114-237 4-128 (138)
89 COG0346 GloA Lactoylglutathion 99.0 2.4E-09 5.3E-14 82.6 7.8 122 113-237 1-138 (138)
90 TIGR01263 4HPPD 4-hydroxypheny 99.0 4.9E-09 1.1E-13 96.7 10.7 100 111-212 155-267 (353)
91 cd06588 PhnB_like Escherichia 98.9 1E-07 2.2E-12 74.9 15.2 110 119-235 4-127 (128)
92 PF13468 Glyoxalase_3: Glyoxal 98.9 5.2E-08 1.1E-12 80.9 13.1 147 115-266 1-175 (175)
93 COG2764 PhnB Uncharacterized p 98.9 2.1E-07 4.6E-12 73.5 15.5 117 119-240 5-133 (136)
94 PLN02875 4-hydroxyphenylpyruva 98.7 8.8E-08 1.9E-12 88.7 10.5 126 112-239 178-341 (398)
95 COG3607 Predicted lactoylgluta 98.6 4.4E-07 9.6E-12 69.2 10.1 115 114-238 3-127 (133)
96 PF14506 CppA_N: CppA N-termin 98.6 3.2E-06 6.9E-11 64.2 13.8 113 116-238 2-114 (125)
97 COG3185 4-hydroxyphenylpyruvat 98.4 4.6E-06 9.9E-11 74.6 11.1 157 112-277 20-202 (363)
98 PRK01037 trmD tRNA (guanine-N( 98.3 4.2E-06 9.2E-11 75.4 10.5 105 113-237 246-353 (357)
99 cd08358 Glo_EDI_BRP_like_21 Th 98.2 2.6E-06 5.6E-11 66.9 5.9 45 244-288 2-57 (127)
100 PF13669 Glyoxalase_4: Glyoxal 98.2 1.8E-05 3.8E-10 60.3 9.5 88 185-274 1-97 (109)
101 PLN02367 lactoylglutathione ly 98.1 6E-06 1.3E-10 71.0 6.2 46 244-289 75-120 (233)
102 COG3185 4-hydroxyphenylpyruvat 98.1 8.8E-06 1.9E-10 72.8 7.3 98 112-212 165-274 (363)
103 PF14696 Glyoxalase_5: Hydroxy 98.1 6.3E-05 1.4E-09 59.8 10.6 119 112-241 7-129 (139)
104 PRK10148 hypothetical protein; 98.0 0.00055 1.2E-08 55.2 16.0 116 119-242 6-145 (147)
105 PLN03042 Lactoylglutathione ly 98.0 1.1E-05 2.4E-10 67.5 5.9 46 244-289 27-72 (185)
106 TIGR00068 glyox_I lactoylgluta 97.9 3.4E-05 7.3E-10 62.1 6.6 50 240-289 13-62 (150)
107 cd07243 2_3_CTD_C C-terminal d 97.7 8.8E-05 1.9E-09 59.4 6.7 47 242-288 4-51 (143)
108 cd07241 Glo_EDI_BRP_like_3 Thi 97.7 5.8E-05 1.3E-09 58.0 5.4 44 244-287 1-44 (125)
109 cd08353 Glo_EDI_BRP_like_7 Thi 97.7 0.0011 2.5E-08 52.3 12.7 90 183-273 3-115 (142)
110 PF00903 Glyoxalase: Glyoxalas 97.7 0.00011 2.4E-09 56.3 5.8 46 244-289 1-48 (128)
111 cd07233 Glyoxalase_I Glyoxalas 97.6 0.00017 3.7E-09 55.1 5.7 45 245-289 1-45 (121)
112 TIGR03081 metmalonyl_epim meth 97.6 8.7E-05 1.9E-09 57.4 4.1 45 244-288 1-45 (128)
113 cd07249 MMCE Methylmalonyl-CoA 97.5 0.0025 5.5E-08 48.9 12.3 104 184-289 1-117 (128)
114 PRK10291 glyoxalase I; Provisi 97.5 0.00026 5.6E-09 55.2 5.6 41 249-289 1-41 (129)
115 cd08352 Glo_EDI_BRP_like_1 Thi 97.4 0.0081 1.8E-07 45.7 12.9 89 183-273 3-100 (125)
116 cd07237 BphC1-RGP6_C_like C-te 97.3 0.00053 1.1E-08 55.5 5.7 34 241-274 6-39 (154)
117 cd07252 BphC1-RGP6_N_like N-te 97.2 0.00034 7.5E-09 53.8 3.6 30 244-273 2-31 (120)
118 cd08360 MhqB_like_C C-terminal 97.2 0.00047 1E-08 54.2 4.4 33 242-274 1-33 (134)
119 cd08346 PcpA_N_like N-terminal 97.2 0.014 3E-07 44.5 12.2 102 183-286 1-116 (126)
120 cd07265 2_3_CTD_N N-terminal d 97.1 0.00048 1E-08 53.0 3.6 31 243-273 3-33 (122)
121 cd08343 ED_TypeI_classII_C C-t 97.1 0.0011 2.4E-08 51.8 5.4 41 246-287 1-41 (131)
122 KOG0638 4-hydroxyphenylpyruvat 97.0 0.00037 8E-09 61.6 2.4 126 112-239 176-338 (381)
123 cd09013 BphC-JF8_N_like N-term 97.0 0.00072 1.6E-08 52.0 3.8 31 243-273 5-35 (121)
124 cd08342 HPPD_N_like N-terminal 97.0 0.028 6.2E-07 44.1 13.1 98 184-286 1-110 (136)
125 cd07247 SgaA_N_like N-terminal 97.0 0.0013 2.8E-08 49.8 5.1 38 245-283 1-38 (114)
126 cd07267 THT_Oxygenase_N N-term 97.0 0.022 4.7E-07 43.1 12.0 98 183-289 3-101 (113)
127 cd08361 PpCmtC_N N-terminal do 97.0 0.00062 1.3E-08 52.8 3.0 31 243-273 5-35 (124)
128 cd07245 Glo_EDI_BRP_like_9 Thi 97.0 0.02 4.4E-07 42.3 11.3 99 184-287 1-106 (114)
129 COG3324 Predicted enzyme relat 97.0 0.0018 3.8E-08 50.6 5.3 46 242-287 7-52 (127)
130 PRK11478 putative lyase; Provi 96.9 0.032 7E-07 42.9 12.5 89 183-273 6-103 (129)
131 PRK06724 hypothetical protein; 96.9 0.002 4.4E-08 50.5 5.5 30 243-272 6-38 (128)
132 cd07250 HPPD_C_like C-terminal 96.9 0.012 2.5E-07 49.5 10.5 90 183-273 3-111 (191)
133 cd07263 Glo_EDI_BRP_like_16 Th 96.9 0.032 7E-07 41.8 11.8 100 186-288 1-110 (119)
134 cd07244 FosA FosA, a Fosfomyci 96.9 0.0014 3E-08 50.4 4.1 30 244-273 1-30 (121)
135 cd08348 BphC2-C3-RGP6_C_like T 96.8 0.0018 3.9E-08 50.6 4.7 31 244-274 1-31 (134)
136 TIGR03645 glyox_marine lactoyl 96.8 0.022 4.8E-07 46.4 11.1 88 182-270 3-118 (162)
137 cd07240 ED_TypeI_classII_N N-t 96.8 0.0016 3.4E-08 49.3 3.9 31 244-274 2-32 (117)
138 COG0346 GloA Lactoylglutathion 96.8 0.0017 3.6E-08 49.4 3.9 34 244-277 2-35 (138)
139 cd07258 PpCmtC_C C-terminal do 96.7 0.0016 3.5E-08 52.0 3.8 29 246-274 1-29 (141)
140 cd07242 Glo_EDI_BRP_like_6 Thi 96.7 0.048 1E-06 41.9 12.1 85 183-274 1-100 (128)
141 cd07253 Glo_EDI_BRP_like_2 Thi 96.7 0.002 4.3E-08 49.1 4.1 32 243-274 2-33 (125)
142 cd08362 BphC5-RrK37_N_like N-t 96.7 0.0018 3.9E-08 49.4 3.8 31 243-273 2-32 (120)
143 cd07255 Glo_EDI_BRP_like_12 Th 96.7 0.0018 3.8E-08 49.8 3.7 30 244-273 2-31 (125)
144 cd08347 PcpA_C_like C-terminal 96.7 0.043 9.2E-07 44.5 12.0 84 183-272 1-95 (157)
145 cd08351 ChaP_like ChaP, an enz 96.7 0.0019 4E-08 49.9 3.7 29 244-272 4-32 (123)
146 cd07266 HPCD_N_class_II N-term 96.7 0.0017 3.7E-08 49.7 3.5 30 244-273 4-33 (121)
147 cd08364 FosX FosX, a fosfomyci 96.6 0.0024 5.2E-08 50.0 4.1 30 244-273 4-33 (131)
148 cd07239 BphC5-RK37_C_like C-te 96.6 0.0025 5.5E-08 51.0 4.2 31 243-273 3-33 (144)
149 PF06983 3-dmu-9_3-mt: 3-demet 96.5 0.15 3.3E-06 39.2 13.5 96 123-236 11-116 (116)
150 cd08357 Glo_EDI_BRP_like_18 Th 96.5 0.0029 6.2E-08 48.5 3.7 27 247-273 2-28 (125)
151 PRK04101 fosfomycin resistance 96.5 0.0033 7.1E-08 49.8 4.0 30 244-273 4-33 (139)
152 cd08363 FosB FosB, a fosfomyci 96.5 0.0029 6.2E-08 49.6 3.5 29 245-273 1-29 (131)
153 cd06587 Glo_EDI_BRP_like This 96.4 0.088 1.9E-06 38.3 11.4 84 186-274 1-90 (112)
154 cd07264 Glo_EDI_BRP_like_15 Th 96.4 0.0042 9.2E-08 47.6 4.1 29 245-273 1-29 (125)
155 cd08344 MhqB_like_N N-terminal 96.4 0.0038 8.1E-08 47.3 3.8 29 244-273 2-30 (112)
156 cd08354 Glo_EDI_BRP_like_13 Th 96.4 0.008 1.7E-07 45.7 5.6 29 245-273 1-29 (122)
157 cd08355 Glo_EDI_BRP_like_14 Th 96.4 0.0077 1.7E-07 46.1 5.3 32 249-280 4-35 (122)
158 cd08345 Fosfomycin_RP Fosfomyc 96.2 0.0052 1.1E-07 46.2 3.3 28 247-274 1-28 (113)
159 cd09011 Glo_EDI_BRP_like_23 Th 96.1 0.0071 1.5E-07 46.2 3.8 29 244-272 2-30 (120)
160 cd07246 Glo_EDI_BRP_like_8 Thi 95.8 0.02 4.3E-07 43.4 5.3 33 248-280 5-37 (122)
161 cd07254 Glo_EDI_BRP_like_20 Th 95.8 0.011 2.3E-07 45.2 3.5 28 246-273 3-30 (120)
162 cd07235 MRD Mitomycin C resist 95.7 0.01 2.2E-07 45.3 3.2 27 245-272 1-27 (122)
163 cd07257 THT_oxygenase_C The C- 95.5 0.18 4E-06 40.5 9.9 86 184-272 2-97 (153)
164 cd09014 BphC-JF8_C_like C-term 95.3 0.26 5.7E-06 40.2 10.3 88 183-271 6-98 (166)
165 PF15067 FAM124: FAM124 family 94.9 0.22 4.8E-06 42.6 9.0 107 112-235 126-235 (236)
166 cd08349 BLMA_like Bleomycin bi 94.9 0.036 7.8E-07 41.2 3.8 26 249-274 3-28 (112)
167 cd07251 Glo_EDI_BRP_like_10 Th 94.8 0.024 5.2E-07 42.9 2.8 26 248-273 2-27 (121)
168 cd08359 Glo_EDI_BRP_like_22 Th 94.7 0.039 8.4E-07 41.8 3.6 27 247-273 4-30 (119)
169 PF12681 Glyoxalase_2: Glyoxal 94.6 0.037 8.1E-07 41.0 3.3 24 250-273 1-24 (108)
170 cd07261 Glo_EDI_BRP_like_11 Th 94.6 0.028 6E-07 42.3 2.6 26 248-273 2-27 (114)
171 cd07262 Glo_EDI_BRP_like_19 Th 94.6 0.47 1E-05 36.0 9.6 83 184-272 1-94 (123)
172 PF13468 Glyoxalase_3: Glyoxal 94.5 0.15 3.2E-06 42.0 7.0 102 184-288 1-122 (175)
173 PF14507 CppA_C: CppA C-termin 94.2 0.11 2.5E-06 38.6 5.1 90 114-233 5-98 (101)
174 cd09012 Glo_EDI_BRP_like_24 Th 94.2 1.3 2.9E-05 33.6 11.5 97 185-286 2-112 (124)
175 KOG2944 Glyoxalase [Carbohydra 94.0 0.012 2.5E-07 47.2 -0.7 46 244-289 22-67 (170)
176 cd08350 BLMT_like BLMT, a bleo 93.8 0.12 2.5E-06 39.4 4.7 26 248-274 6-31 (120)
177 cd07256 HPCD_C_class_II C-term 93.8 1.3 2.9E-05 35.7 11.1 84 183-269 3-90 (161)
178 COG3565 Predicted dioxygenase 93.2 0.098 2.1E-06 39.7 3.1 29 245-273 5-33 (138)
179 cd07238 Glo_EDI_BRP_like_5 Thi 93.0 2.8 6.1E-05 31.0 11.3 80 187-274 4-86 (112)
180 cd08356 Glo_EDI_BRP_like_17 Th 92.2 0.12 2.7E-06 39.1 2.7 25 248-273 5-29 (113)
181 COG2764 PhnB Uncharacterized p 88.7 0.85 1.9E-05 36.1 4.7 29 250-278 6-35 (136)
182 cd06588 PhnB_like Escherichia 87.2 1.1 2.3E-05 34.6 4.4 26 249-274 4-30 (128)
183 PF14506 CppA_N: CppA N-termin 85.1 0.91 2E-05 34.9 2.9 27 247-273 3-29 (125)
184 COG3607 Predicted lactoylgluta 84.4 1 2.2E-05 34.9 2.8 30 247-277 6-35 (133)
185 PF06185 YecM: YecM protein; 83.9 9.6 0.00021 31.8 8.6 78 113-193 33-115 (185)
186 PRK01037 trmD tRNA (guanine-N( 83.6 1 2.2E-05 41.2 3.0 27 244-270 247-273 (357)
187 PRK11700 hypothetical protein; 79.9 28 0.00061 29.0 9.9 78 113-193 38-120 (187)
188 PF13670 PepSY_2: Peptidase pr 73.3 16 0.00036 25.9 6.2 45 193-239 30-74 (83)
189 cd07268 Glo_EDI_BRP_like_4 Thi 72.9 32 0.00069 27.6 8.1 76 115-193 2-82 (149)
190 PF14696 Glyoxalase_5: Hydroxy 63.5 61 0.0013 25.7 8.1 85 183-274 9-102 (139)
191 COG3865 Uncharacterized protei 58.3 95 0.0021 24.8 12.7 98 123-236 14-122 (151)
192 PF07063 DUF1338: Domain of un 57.7 24 0.00053 31.8 5.5 30 180-209 181-216 (302)
193 cd04895 ACT_ACR_1 ACT domain-c 56.0 45 0.00098 23.2 5.5 47 187-233 4-55 (72)
194 PRK10148 hypothetical protein; 55.6 16 0.00035 29.1 3.6 26 249-274 6-32 (147)
195 PF14507 CppA_C: CppA C-termin 54.9 4.6 9.9E-05 30.2 0.3 22 245-267 6-27 (101)
196 cd04883 ACT_AcuB C-terminal AC 45.6 55 0.0012 21.8 4.7 28 184-211 42-71 (72)
197 cd04882 ACT_Bt0572_2 C-termina 45.5 48 0.001 21.5 4.3 26 183-208 39-64 (65)
198 cd04897 ACT_ACR_3 ACT domain-c 39.1 1.1E+02 0.0024 21.4 5.3 47 187-233 4-55 (75)
199 TIGR00318 cyaB adenylyl cyclas 39.0 2.1E+02 0.0046 23.3 9.8 78 187-272 6-103 (174)
200 PF06983 3-dmu-9_3-mt: 3-demet 38.1 53 0.0011 25.0 3.9 16 253-268 11-26 (116)
201 COG4747 ACT domain-containing 35.7 64 0.0014 24.9 3.8 84 184-272 42-135 (142)
202 PF09066 B2-adapt-app_C: Beta2 29.2 1.9E+02 0.0041 21.5 5.7 68 192-263 36-107 (114)
203 KOG4657 Uncharacterized conser 24.3 59 0.0013 27.9 2.2 22 122-143 144-165 (246)
204 PF02208 Sorb: Sorbin homologo 23.5 38 0.00081 21.3 0.6 24 244-267 11-34 (47)
205 KOG4657 Uncharacterized conser 22.0 63 0.0014 27.7 1.9 23 251-273 143-165 (246)
206 cd04906 ACT_ThrD-I_1 First of 21.2 1.9E+02 0.0042 20.3 4.1 27 183-209 40-70 (85)
207 PF13176 TPR_7: Tetratricopept 20.4 30 0.00065 20.0 -0.2 22 247-268 7-28 (36)
No 1
>PLN02300 lactoylglutathione lyase
Probab=99.96 E-value=4.2e-28 Score=217.19 Aligned_cols=187 Identities=84% Similarity=1.429 Sum_probs=155.6
Q ss_pred ccchhhhccCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCC
Q 022769 102 QNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIG 181 (292)
Q Consensus 102 ~g~~~w~~~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g 181 (292)
+....|....+.+|.|+.|.|+|++++++||+++|||++..+...++..+...++..++...++.+++....+......+
T Consensus 12 ~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~ 91 (286)
T PLN02300 12 EDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIG 91 (286)
T ss_pred hhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccC
Confidence 45667877789999999999999999999999999999977654444455667777665555667777654433333345
Q ss_pred CceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCCCCCceeeeeecCCHHHHHHH
Q 022769 182 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINF 261 (292)
Q Consensus 182 ~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~~~~l~hv~l~v~D~~~s~~f 261 (292)
.|+.|++|.|+|+++++++++++|+++..++...+.+..+.+|++||+|+.|||++..+.+.++.|+.|.|+|++++.+|
T Consensus 92 ~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~F 171 (286)
T PLN02300 92 TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKF 171 (286)
T ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHH
Confidence 68999999999999999999999999988877776666677899999999999999998899999999999999999999
Q ss_pred HHHhcCCEEEeeecCCCCcEEEEEcCC
Q 022769 262 YKKAFGMELLRKRDNPDYKVNSYLLPP 288 (292)
Q Consensus 262 Y~~~lG~~~~~~~~~~~~~~~~~~~~~ 288 (292)
|+++|||++.+..+.++..|.++++.+
T Consensus 172 y~~~lg~~~~~~~~~~~~~~~~~~~~~ 198 (286)
T PLN02300 172 YEKAFGMKLLRKRDNPEYKYTIAMMGY 198 (286)
T ss_pred HHhccCCEEEeeecccccceEEEEEec
Confidence 999999999976666666788877654
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.2e-26 Score=187.70 Aligned_cols=176 Identities=51% Similarity=0.928 Sum_probs=157.7
Q ss_pred chhhhccCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CceEEEEEeeCCCCceEEEEEEec
Q 022769 104 VLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYN 172 (292)
Q Consensus 104 ~~~w~~~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~ 172 (292)
..+|..++..|+-|+++.|.|.+++++||+++|||++....+.++ +++...++++|++..|+.+++..+
T Consensus 7 ~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN 86 (299)
T KOG2943|consen 7 LLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN 86 (299)
T ss_pred hhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec
Confidence 468988889999999999999999999999999999998877766 688899999999999999999999
Q ss_pred CCCCCCcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCCCCCceeeeeec
Q 022769 173 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRV 252 (292)
Q Consensus 173 ~~~~~~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~~~~l~hv~l~v 252 (292)
.+...+..|+++.||++.++|+-...+.+...|.+. +....+++.||||+.|++.++.|.+.+++.|+|+|
T Consensus 87 YgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 87 YGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred cCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 999999999999999999999877777776665432 23345779999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCCCCC
Q 022769 253 GDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPNKLQ 292 (292)
Q Consensus 253 ~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
.|+++|++||++.|||++.+. +.+|+.+.|++++.|
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~q 193 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDEQ 193 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCcc
Confidence 999999999999999999985 567888999999876
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.89 E-value=1.7e-21 Score=175.75 Aligned_cols=155 Identities=25% Similarity=0.309 Sum_probs=116.9
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+|+.|.|+|++++++||+++|||++..+.. . .+++.......+..+.+... ...|++|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--~----~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--Q----RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--c----eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 6799999999999999999999999999876532 1 24444322222334444322 124789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC---------------------CCCcee
Q 022769 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 247 (292)
Q Consensus 192 ~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~---------------------~~~l~h 247 (292)
+ |+++++++|+++|+++...+.....+....+|++||+|+.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 6889999999999998765542223445679999999999999974421 226899
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEeeecCCCC
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDY 279 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~ 279 (292)
|.|.|+|++++.+||+++|||++.++...++.
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~ 180 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDG 180 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCC
Confidence 99999999999999999999999876544443
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.88 E-value=6.5e-21 Score=171.14 Aligned_cols=160 Identities=28% Similarity=0.380 Sum_probs=118.4
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+||.|.|+|++++++||+++|||++..+.. ..+++.......+..+.+... ...++.|++|.|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~v 68 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFRV 68 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEEe
Confidence 6799999999999999999999999999876532 134444322222233444332 124788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC---------------CCCCceeeeeecC
Q 022769 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRVG 253 (292)
Q Consensus 192 ~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~---------------~~~~l~hv~l~v~ 253 (292)
+ |+++++++|+++|+++...+. .+..+.+||+||||+.|||++... ...+++|+.|.|.
T Consensus 69 ~~~~dl~~~~~~l~~~Gv~v~~~~~---~~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~ 145 (294)
T TIGR02295 69 SKEEDLDKAADFFQKLGHPVRLVRD---GGQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVP 145 (294)
T ss_pred CCHHHHHHHHHHHHhcCCcEEeecC---CCCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeC
Confidence 7 688999999999999865432 234578999999999999986321 1237899999999
Q ss_pred CHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcC
Q 022769 254 DLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLP 287 (292)
Q Consensus 254 D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~ 287 (292)
|++++.+||+++|||+++++...++......|+.
T Consensus 146 dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~ 179 (294)
T TIGR02295 146 DVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLH 179 (294)
T ss_pred CHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEe
Confidence 9999999999999999987654444443344443
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.87 E-value=6.2e-21 Score=170.79 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=114.2
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+.+|+|++|.|+|++++++||+++|||++..+.. + ...|+..+.. ++.+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSR--AHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCC--ceEEEEEECC-------cCCeeeEeeee
Confidence 4689999999999999999999999998754321 1 1345565432 2334443321 13688999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCee--cCCCCeEEEEEECCCCCEEEEEEcCCC------------------CCCceee
Q 022769 192 ED---VAKTVDLVKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQV 248 (292)
Q Consensus 192 ~D---l~~~~~~L~~~G~~i~~~p~~--~~~g~~~~~y~~DPdG~~iel~e~~~~------------------~~~l~hv 248 (292)
+| ++++.++|+++|+++...+.. ...+...+++|+|||||.+|++..... +.+|+||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 888999999999998765432 122456789999999999999963311 2278999
Q ss_pred eeecCCHHHHHHHHHHhcCCEEEeeec
Q 022769 249 MLRVGDLDRAINFYKKAFGMELLRKRD 275 (292)
Q Consensus 249 ~l~v~D~~~s~~fY~~~lG~~~~~~~~ 275 (292)
.|.|+|++++.+||+++|||++++...
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~ 173 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVID 173 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEc
Confidence 999999999999999999999987643
No 6
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.84 E-value=1.5e-19 Score=146.60 Aligned_cols=137 Identities=63% Similarity=1.079 Sum_probs=104.8
Q ss_pred cCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEE
Q 022769 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (292)
Q Consensus 110 ~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~ 189 (292)
+.+++|.|+.|.|.|++++.+||+++|||++..+...++..+..+++..+....+..+++.......+...+.++.|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 56889999999999999999999999999987665444444455666655444445566544332222233458999999
Q ss_pred eeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCCCCCce
Q 022769 190 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLC 246 (292)
Q Consensus 190 ~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~~~~l~ 246 (292)
.|+|++++.++|.++|+++..++...+.+..+.+|++||+|++|||++..+...+++
T Consensus 93 ~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 149 (150)
T TIGR00068 93 GVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLG 149 (150)
T ss_pred ecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhcc
Confidence 999999999999999999887776666666678899999999999999876655543
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.82 E-value=8e-19 Score=150.27 Aligned_cols=151 Identities=24% Similarity=0.382 Sum_probs=117.2
Q ss_pred CccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC-CCcCCCceEEEEE
Q 022769 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-KYDIGTGFGHFGI 189 (292)
Q Consensus 111 ~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~~~~g~g~~hia~ 189 (292)
..+.++-|+|.|+|++++..||+++||+++..+.. ....+..++. ..+.+.+.+... ......|+.|+||
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCccccceeeeee
Confidence 35678999999999999999999999999988754 2345555443 344444432222 2234569999999
Q ss_pred eeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC-------------------------
Q 022769 190 AVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------------------------- 241 (292)
Q Consensus 190 ~V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~------------------------- 241 (292)
.+++ +..+..++.+.|..+.. .. +......+|+.||+||.||++.++|.
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~G-a~--DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~ 154 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLVG-AS--DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEE 154 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCcccc-cC--cchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhh
Confidence 9996 77788899999998862 23 33567789999999999999977542
Q ss_pred -----------CCCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 242 -----------PEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 242 -----------~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
...|+||.|.|.|++++.+||.++|||++..+
T Consensus 155 ~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 155 ATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred ccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec
Confidence 11589999999999999999999999999986
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.82 E-value=1.1e-18 Score=137.78 Aligned_cols=125 Identities=56% Similarity=1.044 Sum_probs=95.7
Q ss_pred EEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHHHH
Q 022769 120 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 199 (292)
Q Consensus 120 L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~~~ 199 (292)
|.|+|++++++||+++|||++..+...++..+..+++..++......+++....+..+...+.+++|++|.|+|++++++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~ 81 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACE 81 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHH
Confidence 78999999999999999999877655555556677776655443445666544333333455689999999999999999
Q ss_pred HHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCCCCC
Q 022769 200 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 244 (292)
Q Consensus 200 ~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~~~~ 244 (292)
+|+++|+++..++...+.+..+.+||+||||++|||++....+..
T Consensus 82 ~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 82 KIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 999999998776665555556678899999999999997644433
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=4.3e-18 Score=145.37 Aligned_cols=130 Identities=36% Similarity=0.680 Sum_probs=102.9
Q ss_pred cCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCC---------------CceEEEEEEecCC
Q 022769 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE---------------DSHFVVELTYNYG 174 (292)
Q Consensus 110 ~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~---------------~~~~~l~l~~~~~ 174 (292)
+....+.|+.|.|+|++++++||+++|||++..+.+.++..+..+|+++++. .....|||..+.+
T Consensus 71 t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g 150 (233)
T PLN02367 71 TKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWG 150 (233)
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCC
Confidence 3456899999999999999999999999999998888888888888865331 1134688877554
Q ss_pred CCC------CcCC----CceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 175 VDK------YDIG----TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 175 ~~~------~~~g----~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
... +..+ .|++||+|.|+|+++++++|+++|+++...|.... ....+|++||||++|||++....
T Consensus 151 ~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 151 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred CCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEecccc
Confidence 331 2222 48999999999999999999999999987665432 24568999999999999986543
No 10
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.78 E-value=5.5e-18 Score=151.73 Aligned_cols=159 Identities=21% Similarity=0.284 Sum_probs=110.9
Q ss_pred chhhhhhhhhcCCeeeeccCCCCCCCeeecCCccchhhhccCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeC--C
Q 022769 70 GAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDI--P 147 (292)
Q Consensus 70 g~~~~~~~d~dg~~~~~~~~~~~~~a~~~~~p~g~~~w~~~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~--~ 147 (292)
+..++.|.||+|+.+++..+...........|.....+ ...+++|+||+|.|+|++++.+||+++|||++...... +
T Consensus 99 ~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~ 177 (286)
T TIGR03213 99 VLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAG 177 (286)
T ss_pred ceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCcc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCC
Confidence 34678899999999999876553311001111111113 34578999999999999999999999999998765322 1
Q ss_pred CC-ceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEE
Q 022769 148 ED-RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIA 223 (292)
Q Consensus 148 ~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~---~~~~L~~~G~~i~~~p~~~~~g~~~~~ 223 (292)
++ .+..+|+.+++.+ +.+.+.... ...+++|++|+|+|.++ +.++|+++|+ ....++.++.++..++
T Consensus 178 ~g~~~~~~~l~~~~~~--~~~~l~~~~------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~ 248 (286)
T TIGR03213 178 PGVTVRPYFLHCNERH--HSLAFAAGP------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSF 248 (286)
T ss_pred CCCcceEEEEEECCCc--ceEEEecCC------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEE
Confidence 11 1235677665443 233333211 23489999999998665 7999999999 5556666666778899
Q ss_pred EEECCCCCEEEEEEc
Q 022769 224 FIEDPDGYKFELLER 238 (292)
Q Consensus 224 y~~DPdG~~iel~e~ 238 (292)
|++||+|++||+.+.
T Consensus 249 y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 249 YVATPSGWLVEYGWG 263 (286)
T ss_pred EEECCCCcEEEeecC
Confidence 999999999999864
No 11
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=2.2e-17 Score=128.02 Aligned_cols=120 Identities=53% Similarity=0.927 Sum_probs=89.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCC-CCCcCCCceEEEEEeeCC
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAVED 193 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~g~g~~hia~~V~D 193 (292)
|.|++|.|+|++++.+||+++|||++......+++.+..+++.......+..+++....+. .....+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887654444345556776544112334555443222 223344588999999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 194 l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
+++++++++++|+++..+|... +..+.+|++||+|++||++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999998776655 3456789999999999985
No 12
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.77 E-value=2.6e-17 Score=137.53 Aligned_cols=128 Identities=34% Similarity=0.655 Sum_probs=97.3
Q ss_pred cCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCC---------------ceEEEEEEecCC
Q 022769 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNYG 174 (292)
Q Consensus 110 ~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~ 174 (292)
+...++.|+.|.|.|++++++||+++|||++..+...++..+..+++..+... ....|+|....+
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~ 102 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG 102 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence 34668999999999999999999999999998887666666777777643211 123677775433
Q ss_pred CCC------Cc----CCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 175 VDK------YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 175 ~~~------~~----~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
... +. .+.|++|++|.|+|+++++++|+++|+.+...|... .....+|++||||++|||++..
T Consensus 103 ~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~--~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 103 TESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG--KMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC--CceeEEEEECCCCCEEEEEECC
Confidence 211 21 124899999999999999999999999987665432 2345678899999999999864
No 13
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.77 E-value=1.9e-17 Score=133.23 Aligned_cols=118 Identities=17% Similarity=0.258 Sum_probs=87.7
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCc-eEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEe
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~ 190 (292)
+++|+||+|.|+|++++.+||+++|||++..+...+++. ....|+..+.. . +.+.+... .+.+++|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~-h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-P-HDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-c-ceEEEecC-------CCCCceEEEEE
Confidence 568999999999999999999999999987664332222 23456655433 2 23333221 12489999999
Q ss_pred eCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 191 VEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 191 V~Dl~~---~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
|+|+++ +.++|+++|+++..+|..+..+...++||+||||++|||.+.
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999776 678999999998777765543456779999999999999865
No 14
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.77 E-value=1.8e-18 Score=148.04 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=126.9
Q ss_pred ccchhhhhhccccccccccchhhhhhhhhcCCeeeeccCCCCCCCeeecCCcc----------chhhhccC---------
Q 022769 51 SRRLALFQLGAAIPQSHFFGAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQN----------VLDWVKSD--------- 111 (292)
Q Consensus 51 ~~r~~~~~~~~~~~~~~~~g~~~~~~~d~dg~~~~~~~~~~~~~a~~~~~p~g----------~~~w~~~~--------- 111 (292)
.+..||||+|+++|.+.++|....++.. .|.++...++|.+++|.|+.||+| ..+|.+..
T Consensus 67 ~~~aGLyH~AfLlP~r~~L~~~l~hl~~-~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ 145 (265)
T COG2514 67 PRAAGLYHTAFLLPTREDLARVLNHLAE-EGIPLVGASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEP 145 (265)
T ss_pred ccccceeeeeeecCCHHHHHHHHHHHHh-cCCcccccCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccc
Confidence 4679999999999999999999999888 899999899999999999999997 33443222
Q ss_pred --------------------ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEe
Q 022769 112 --------------------KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY 171 (292)
Q Consensus 112 --------------------i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~ 171 (292)
.+.|+||+|.|.|++++.+||+++|||+++.+.. ...|++.|++++|+..+.|.
T Consensus 146 ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~ 219 (265)
T COG2514 146 LDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWN 219 (265)
T ss_pred cCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccc
Confidence 5789999999999999999999999999988722 35899999999999999998
Q ss_pred cCCCCCCc-CCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 172 NYGVDKYD-IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 172 ~~~~~~~~-~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
..+..+.. ...|+.++.+.+++-..+..... ..+||+|+.|.+.
T Consensus 220 s~~~~~~~~~~~GLa~~~i~~~~~~~l~~~~~---------------------~~~Dp~G~~i~~~ 264 (265)
T COG2514 220 SRGARPRNANASGLAWLEIHTPDPEKLDATGT---------------------RLTDPWGIVIRVV 264 (265)
T ss_pred cCCCCCCCCCCCCcceEEEEcCCccccccccc---------------------ceecCCCceEEEe
Confidence 76654432 34588899998887543211100 1289999998875
No 15
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.77 E-value=1.5e-17 Score=129.69 Aligned_cols=115 Identities=29% Similarity=0.323 Sum_probs=85.6
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+|++|.|+|++++++||+++|||++..... + ..+++.......++.+.+... ...+++|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--Q---GRVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--C---ceEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6799999999999999999999999999866531 1 124554322222334444321 123789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
. |++++.++|+++|+++...|.....+....+|++|||||+||++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 7 6899999999999998765544444455689999999999999865
No 16
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=2.5e-17 Score=130.91 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=89.7
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
.+|+|++|.|+|++++++||+++|||++..... . ...|+..++...++.+.+..... ...|++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 589999999999999999999999999876532 1 24566654323344555544221 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC
Q 022769 193 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (292)
Q Consensus 193 Dl~~~~---~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~ 240 (292)
|++++. ++|+++|+++...+..++.+...++|++||+|++|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 877665 699999999877666666556677999999999999997543
No 17
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=7e-18 Score=137.33 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=89.5
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCC-CCceEEEEEeeCCCC---ceEEEEEEecCCCCCCcCCCceEEEEE
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPED---SHFVVELTYNYGVDKYDIGTGFGHFGI 189 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~---~~~~l~l~~~~~~~~~~~g~g~~hia~ 189 (292)
+|+||+|.|+|++++++||+++||+++..+...+ .+....+|+..+... .++.+.+... .+.|++|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQG-------PESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcC-------CCCceeEEEE
Confidence 5899999999999999999999999987654332 233356777654321 1111222111 1358999999
Q ss_pred eeCCHHHHH---HHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 190 AVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 190 ~V~Dl~~~~---~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
.|+|++++. ++|+++|+++.++++.+..+...++|++||+|++|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999876 99999999998887777666667889999999999999664
No 18
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=7.2e-17 Score=129.18 Aligned_cols=123 Identities=26% Similarity=0.316 Sum_probs=88.0
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CceEEEEEeeCCCCceEEEEEEecCCC--C--
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGV--D-- 176 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~--~-- 176 (292)
+.+|+||+|.|+|++++++||++ |||++..+...++ ......++.... ....+++.....+ .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCc
Confidence 46899999999999999999998 9998865432211 122334444322 2345665542111 1
Q ss_pred ---CCcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 177 ---KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 177 ---~~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
....+.|++|+||.|+|+++++++|+++|+++..++.... +..+.+|++||||+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1112458999999999999999999999999877655443 356778999999999999974
No 19
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=8.6e-17 Score=126.31 Aligned_cols=115 Identities=46% Similarity=0.897 Sum_probs=86.4
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CceEEEEEeeCCCCceEEEEEEecCCCCCCcCC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIG 181 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g 181 (292)
.++.|++|.|+|+++|++||+++|||++..+...++ +.+...++..++...+..+++....+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 378999999999999999999999999877664444 344445566544445678888876665555555
Q ss_pred CceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 182 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 182 ~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
.+ |++|.|++. ++.++|+++|+++...+. + +++++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 666666666 556999999998875433 2 6789999999999974
No 20
>PRK11478 putative lyase; Provisional
Probab=99.75 E-value=6.7e-17 Score=126.96 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=83.8
Q ss_pred CccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC---CCCCcCCCceEEE
Q 022769 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG---VDKYDIGTGFGHF 187 (292)
Q Consensus 111 ~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~---~~~~~~g~g~~hi 187 (292)
.+.+|+||+|.|+|++++.+||+++|||++..+...+........+..++ +..+++..... .+......|++|+
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi 79 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG---QYVIELFSFPFPPERPSRPEACGLRHL 79 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC---CcEEEEEEecCCCCCCCCCCCCceeEE
Confidence 35689999999999999999999999999864322111111111222222 23455543211 1111123478999
Q ss_pred EEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 188 a~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+|.|+|+++++++|+++|+++...+.. +.++.+++|++||+|+.||+++
T Consensus 80 ~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 80 AFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 999999999999999999997643222 2234567899999999999986
No 21
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.73 E-value=1.7e-16 Score=130.37 Aligned_cols=124 Identities=30% Similarity=0.360 Sum_probs=86.4
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEe----eC--------------CCCceEEEEEeeCCCCceEEEEEEecCC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKR----DI--------------PEDRYTNAFLGYGPEDSHFVVELTYNYG 174 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~ 174 (292)
++|+||+|.|+|++++++||+++|||++..+. .. ....+..+++..++ ...+++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 58999999999999999999999999885321 00 01124455665443 23466665432
Q ss_pred CCCC-c----CCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCee-c-CC-CCeEEEEEECCCCCEEEEEEcC
Q 022769 175 VDKY-D----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGP-V-KG-GNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 175 ~~~~-~----~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~-~-~~-g~~~~~y~~DPdG~~iel~e~~ 239 (292)
.... . .+.|++|++|.|+|+++++++|+++|+++...+.. . +. ...+++|++||||+.|||++..
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 2111 1 13589999999999999999999999875433211 1 11 1246899999999999999864
No 22
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.73 E-value=1.1e-16 Score=144.52 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=105.1
Q ss_pred hhhhhhhhhcCCeeeeccCCCCCCCee-ecCCcc-chhhhccCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCC
Q 022769 71 AKALKLLRAEGSTIEASTSGNMAPTSN-TVTEQN-VLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 148 (292)
Q Consensus 71 ~~~~~~~d~dg~~~~~~~~~~~~~a~~-~~~p~g-~~~w~~~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~ 148 (292)
.....|.||+|+.+++........... ...+.. ...+....+++|+||.|.|+|++++++||+++|||++......+.
T Consensus 100 g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~ 179 (303)
T TIGR03211 100 GRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGD 179 (303)
T ss_pred ceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCC
Confidence 356779999999999886544221100 000000 001111236799999999999999999999999999876543333
Q ss_pred Cce-EEEEEeeCCCCceEEEEEEecCCCCCCcCCCc-eEEEEEeeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEE
Q 022769 149 DRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIA 223 (292)
Q Consensus 149 ~~~-~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g-~~hia~~V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~ 223 (292)
+.. ...|+..+...+ .+.+... .+.| ++|++|.|+| +++++++|+++|+++..+|..+..+..+++
T Consensus 180 ~~~~~~~~~~~~~~~~--~~~~~~~-------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~ 250 (303)
T TIGR03211 180 GKEQAAAWLSVSNKAH--DIAFVGD-------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTI 250 (303)
T ss_pred CcEEEEEEEEcCCCCc--ccceecC-------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEE
Confidence 322 345565433222 2222211 1224 9999999997 555788999999998877766554445789
Q ss_pred EEECCCCCEEEEEEc
Q 022769 224 FIEDPDGYKFELLER 238 (292)
Q Consensus 224 y~~DPdG~~iel~e~ 238 (292)
||+||+|++||++..
T Consensus 251 y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 251 YFFDPSGNRNETFGG 265 (303)
T ss_pred EEECCCCCEEEEecC
Confidence 999999999999844
No 23
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.73 E-value=2.1e-16 Score=141.91 Aligned_cols=156 Identities=23% Similarity=0.307 Sum_probs=103.9
Q ss_pred hhhhhhhhhcCCeeeeccCCCCCCCeeecCCccchhhhccCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCc
Q 022769 71 AKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR 150 (292)
Q Consensus 71 ~~~~~~~d~dg~~~~~~~~~~~~~a~~~~~p~g~~~w~~~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~ 150 (292)
.+.+.|.||+|+.+++..+....... ..... .+....+++|+||+|.|+|++++.+||+++|||++......+.+.
T Consensus 97 ~~~~~~~DPdG~~iEl~~~~~~~~~~-~~~~~---~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~ 172 (294)
T TIGR02295 97 PEALRVEDPFGYPIEFYFEMEKVERL-LRRYH---RHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGN 172 (294)
T ss_pred ceEEEEECCCCCEEEEEEchhhcccc-ccccc---ccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCc
Confidence 35667778888888776543311000 00000 011124789999999999999999999999999987654333333
Q ss_pred eEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC---HHHHHHHHHHcCCe--eecCCeecCCCCeEEEEE
Q 022769 151 YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFI 225 (292)
Q Consensus 151 ~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D---l~~~~~~L~~~G~~--i~~~p~~~~~g~~~~~y~ 225 (292)
....|+...... +.+.+... .+.+++|+||.|+| ++++.++|+++|++ +...|+.+..+...++|+
T Consensus 173 ~~~~~~~~~~~~--~~~~~~~~-------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~ 243 (294)
T TIGR02295 173 LAAAWLHRKGGV--HDIALTNG-------NGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYL 243 (294)
T ss_pred EEEEEEecCCCc--CceEeecC-------CCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEE
Confidence 334555443322 23333221 23589999999998 55668899999987 666666554455677999
Q ss_pred ECCCCCEEEEEEcC
Q 022769 226 EDPDGYKFELLERG 239 (292)
Q Consensus 226 ~DPdG~~iel~e~~ 239 (292)
+||+|++||+++..
T Consensus 244 ~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 244 RDPDGHRIELYTGD 257 (294)
T ss_pred ECCCCCEEEEEecc
Confidence 99999999999754
No 24
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.73 E-value=1.6e-16 Score=129.48 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=92.0
Q ss_pred cCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCC---CCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEE
Q 022769 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 186 (292)
Q Consensus 110 ~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~h 186 (292)
+..++|+||+|.|+|++++++||+++|||++....... +.....+|+..+..++ .+.+.... .+.+++|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~~------~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEGP------GPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcCC------CCceeEE
Confidence 45679999999999999999999999999986643221 1133466776644322 33343321 1348999
Q ss_pred EEEeeCCH---HHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 187 FGIAVEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 187 ia~~V~Dl---~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
++|.|+|+ +++.++|+++|+++..++..++.+..+++|++||+|++|||....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 99999875 468999999999998777766666778899999999999998664
No 25
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.73 E-value=3.8e-16 Score=124.49 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=89.6
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC------CcCCCceEEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGHFG 188 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~g~g~~hia 188 (292)
|+|+.|.|.|++++++||+++|||++......+ .....++..+ ...+.+........ ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999998764322 1223334322 24455544222111 11345899999
Q ss_pred EeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 189 ~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
|.|+|+++++++|+++|+++..+|...+ +..+.++++||+|+.|||+++...
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999988887744 456788999999999999997654
No 26
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2.3e-16 Score=122.43 Aligned_cols=121 Identities=30% Similarity=0.372 Sum_probs=83.9
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC--C-CCCcCCCceEEEEE
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG--V-DKYDIGTGFGHFGI 189 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~--~-~~~~~g~g~~hia~ 189 (292)
++|+|++|.|.|++++.+||+++|||++......++.......+... .. ..+++..... . .....+.|++|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GG--YQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CC--cEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 58999999999999999999999999987654322211112222221 22 2334332211 1 11113458999999
Q ss_pred eeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 190 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 190 ~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
.|+|+++++++|+++|+++..++... .+..+++|++||+|++|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDE-FTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccC-CCceEEEEEECCCCCEEEecC
Confidence 99999999999999999987654332 334567899999999999975
No 27
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=2.1e-16 Score=122.96 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=84.8
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC---CcCCCceEEEEEe
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHFGIA 190 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~g~g~~hia~~ 190 (292)
+|+|++|.|+|++++++||+++|||++......+...+...|+..++ ...+++........ .....|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 58999999999999999999999999865443333334455666542 23456654322111 1223488999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 191 V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
|+| +++++++|+++|+++..+|...+.| .+.++++|||||.|||
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEI 124 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEe
Confidence 964 8999999999999998766544443 3346799999999998
No 28
>PLN02300 lactoylglutathione lyase
Probab=99.72 E-value=4.9e-16 Score=139.16 Aligned_cols=144 Identities=46% Similarity=0.763 Sum_probs=106.3
Q ss_pred eeecCCccchhh-hc--cCccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEec
Q 022769 96 SNTVTEQNVLDW-VK--SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN 172 (292)
Q Consensus 96 ~~~~~p~g~~~w-~~--~~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~ 172 (292)
.++.||+|...- .+ ....++.|+.|.|+|++++.+||+++|||++......++..+..+++..++......+++...
T Consensus 133 ~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 212 (286)
T PLN02300 133 AFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYN 212 (286)
T ss_pred EEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeec
Confidence 456777762211 11 124578899999999999999999999999986544444556667765543322334555444
Q ss_pred CCCCCCcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 173 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 173 ~~~~~~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
.+..++..+++++|++|.|+|+++++++++++|+++..+|...++...+.++++||+|+.++|++..
T Consensus 213 ~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 213 YGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred CCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 3333344567899999999999999999999999999888877754456788999999999999864
No 29
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.72 E-value=1.1e-16 Score=124.61 Aligned_cols=120 Identities=28% Similarity=0.404 Sum_probs=86.3
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeC--CCCceEEEEEeeCCCCceEEEEEEecCCCCCCcC---CCceEEEE
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDI--PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI---GTGFGHFG 188 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~---g~g~~hia 188 (292)
||+||+|.|+|++++++||+++|||++...... ........++..+.. ++.+............. ..+.+|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 699999999999999999999999999987652 222334445544433 34444444332222111 01345666
Q ss_pred EeeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 189 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 189 ~~V~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
+.+. |+++++++|++.|+++..++.....+...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6655 6888999999999999988877777777878999999999997
No 30
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.71 E-value=4.1e-16 Score=124.73 Aligned_cols=116 Identities=23% Similarity=0.432 Sum_probs=86.0
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+|+.|.|+|++++++||+++|||++..+.. ..+++..++ ..+.+......+....+.+++|++|.+
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~v 71 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFSI 71 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEEe
Confidence 5789999999999999999999999999875522 234554432 233333322222212234788999999
Q ss_pred C--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 192 E--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~--Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+ |+++++++++++|+++..++...+. ..+.+|++||+|++||+.+.
T Consensus 72 ~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 72 EEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred cHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 8 8999999999999998766555543 45789999999999999854
No 31
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.71 E-value=3.8e-16 Score=121.63 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=84.3
Q ss_pred CccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEe
Q 022769 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (292)
Q Consensus 111 ~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~ 190 (292)
.+.+|+|++|.|+|++++.+||+++|||++..+.+ ..+++...+...++.+.+... ...+++|++|.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 47799999999999999999999999999876532 135565433223344554432 12489999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 191 V~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
|+ |+++++++++++|+++...+... +.+..+|++||+|+++|++...
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 97 48889999999999874332222 3445789999999999998653
No 32
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=4.9e-16 Score=128.20 Aligned_cols=123 Identities=22% Similarity=0.350 Sum_probs=90.0
Q ss_pred CccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEe
Q 022769 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (292)
Q Consensus 111 ~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~ 190 (292)
.+.+|+|+.|.|+|++++++||+++|||++........+.....|+...... +.+.+..... ....+++|++|.
T Consensus 3 ~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~l~~~~~----~~~~~~~hiaf~ 76 (166)
T cd09014 3 GVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKV--HDVAYTRDPA----GARGRLHHLAYA 76 (166)
T ss_pred CcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCc--eeEEEecCCC----CCCCCceEEEEE
Confidence 4779999999999999999999999999987654333333344666554322 2333332211 112378999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 191 V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
|+| +++++++|+++|+++..+|..+..+...++|++||+|++||+++..
T Consensus 77 v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 77 LDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 986 5578899999999987666665544556799999999999999874
No 33
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=3.9e-16 Score=127.58 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=85.7
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCceEEEEEeeC
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVE 192 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~g~g~~hia~~V~ 192 (292)
+|+||+|.|+|++++.+||+++|||++..+.. + ...+...+. ..+..+.+........ .....+++|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999976642 1 223333221 2234566655422221 112247899999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 193 D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
| +++++++|+++|+.+.. +. ..+..+++|++||+|+.||+++..+.
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~--~~~~~~s~yf~DPdG~~iEl~~~~~~ 123 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IV--DRFYFKSLYFREPGGILFEIATDGPG 123 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cc--ccccEEEEEEECCCCcEEEEEECCCC
Confidence 8 89999999999998643 22 23456789999999999999987643
No 34
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=3.1e-16 Score=125.90 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=86.7
Q ss_pred EEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC--
Q 022769 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (292)
Q Consensus 116 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D-- 193 (292)
+||.|.|+|++++++||+++|||++..+... ..+|+...+...++.+.+... ...+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 5999999999999999999999998766321 357776544333344433221 12489999999986
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 194 -l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
+++++++|+++|+++..+|..++.+..+.+|++||+|+.||+....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 5577999999999998888777666677899999999999998654
No 35
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.71 E-value=2.8e-16 Score=122.15 Aligned_cols=114 Identities=27% Similarity=0.356 Sum_probs=84.3
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+|++|.|+|++++++||+++|||++..... ..+++.......+..+.+... ...++.|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEEC
Confidence 6799999999999999999999999999865421 134554322222334444332 123788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
. |+++++++++++|+++...|.....+...++|+.||+|++||++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 5 6889999999999998765444444455789999999999999854
No 36
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=7.6e-16 Score=120.17 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=86.4
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCC-CCCcCCCceEEEEEee
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAV 191 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~g~g~~hia~~V 191 (292)
++|+|+.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 589999999999999999999999999976632 135555443 2334455443322 1122345889999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 192 ED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 192 ~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
++ +++++++|+++|+++... .. .+..+++|++||+|+++||....|.
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~--~~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SD--HLVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-cc--ccceeEEEEECCCCCEEEEEEecCc
Confidence 74 889999999999987532 22 2345679999999999999987664
No 37
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.70 E-value=6.6e-16 Score=126.77 Aligned_cols=118 Identities=25% Similarity=0.395 Sum_probs=84.1
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
++|+||.|.|+|++++++||+++|||++......+.+.....++..+... ..+.+... .+.+++|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~--~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGV--HDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCc--ceEEEecC-------CCCceeEEEEEcC
Confidence 58999999999999999999999999987544332333334555543322 23333321 2347999999998
Q ss_pred C---HHHHHHHHHHcCCe--eecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 193 D---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 193 D---l~~~~~~L~~~G~~--i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
| +++++++|+++|+. +..+|+.+..+...++|++||+|+.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 77788999999986 33344443333456799999999999999654
No 38
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1e-15 Score=118.77 Aligned_cols=118 Identities=29% Similarity=0.455 Sum_probs=85.4
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCC---CCCcCCCceEEEE
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFG 188 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~---~~~~~g~g~~hia 188 (292)
+++|+|+.|.|+|++++++||+++|||+........ . ...+..++ ..+++...... .....+.|..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 468999999999999999999999999987653211 1 23343332 23444432211 1122345889999
Q ss_pred EeeCC-HHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEECCCCCEEEEEE
Q 022769 189 IAVED-VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 189 ~~V~D-l~~~~~~L~~~G~~i~~~p~~~~~--g~~~~~y~~DPdG~~iel~e 237 (292)
|.+++ +++++++|+++|+++..+|....+ +..+.+|++||+|++||+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998776654322 34577899999999999975
No 39
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=6.1e-16 Score=121.30 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=84.0
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+.+|+||+|.|+|++++.+||+++|||++..+.. ..+|+..+.. ++.+.+.... ++..|++|+|
T Consensus 4 ~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~v 67 (124)
T cd08361 4 LQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFEL 67 (124)
T ss_pred EEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEEE
Confidence 5789999999999999999999999999865421 2466765432 2334443321 2567999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecC--CCCeEEEEEECCCCCEEEEEEcC
Q 022769 192 ED---VAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 192 ~D---l~~~~~~L~~~G~~i~~~p~~~~--~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
+| +++++++++++|+++...+.... .+...++||+|||||.||++...
T Consensus 68 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 68 RDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 85 99999999999998866543221 23456789999999999998654
No 40
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.68 E-value=9.4e-16 Score=119.38 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=83.8
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
++|+||+|.|+|++++++||+++|||++..+.. . ..+++..++. ++.+.+.... ..++.|++|.+.
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEEC
Confidence 479999999999999999999999999865421 1 2356655433 3445554321 237889999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCeec--CCCCeEEEEEECCCCCEEEEEEcC
Q 022769 193 D---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 193 D---l~~~~~~L~~~G~~i~~~p~~~--~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
+ +++++++|+++|+++...+... ..+...++|++||||+.||++..+
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 4 8889999999999987654322 234457899999999999998643
No 41
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=2.1e-15 Score=119.22 Aligned_cols=116 Identities=29% Similarity=0.435 Sum_probs=87.2
Q ss_pred EEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHH
Q 022769 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 195 (292)
Q Consensus 116 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~ 195 (292)
+||.|.|+|++++++||+++||+++......+ +.....|+..++.. ..+.+..... ..++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~~------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDH--HDLALFPGPE------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCc--ceEEEEcCCC------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654432 33345677655432 2344433211 348999999999864
Q ss_pred ---HHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC
Q 022769 196 ---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (292)
Q Consensus 196 ---~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~ 240 (292)
+++++++++|+++..++...+.+..+++|++||+|++|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999887766555555678899999999999997654
No 42
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.68 E-value=8.7e-16 Score=120.15 Aligned_cols=119 Identities=31% Similarity=0.498 Sum_probs=83.7
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC-C-----CcCCCceEEE
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-K-----YDIGTGFGHF 187 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~-----~~~g~g~~hi 187 (292)
+|+|++|.|+|++++++||+++|||++......++.....+++..++ ..+++....... . ...+.|++|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999876543333344455665432 244444321111 0 0124588999
Q ss_pred EEeeCCHHHHHHHHHHcCCeeecC-CeecCCCCeEEEEE--ECCCCCEEEEEE
Q 022769 188 GIAVEDVAKTVDLVKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 237 (292)
Q Consensus 188 a~~V~Dl~~~~~~L~~~G~~i~~~-p~~~~~g~~~~~y~--~DPdG~~iel~e 237 (292)
+|.|+|+++++++|+++|+++..+ |....+ +....|+ +||||+.||+.|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 999999999999999999998754 333323 3345566 799999999974
No 43
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.68 E-value=2.4e-15 Score=115.79 Aligned_cols=111 Identities=27% Similarity=0.436 Sum_probs=85.2
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
++|+|+.|.|+|++++++||+++|||++..... ..+++..+. ..++.+.+.... ..++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 589999999999999999999999999886642 235666542 223444443321 237889999998
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 193 ---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 193 ---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++++.++++++|+++...+...+ +..+.+|+.||+|+++|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEc
Confidence 588999999999999877655333 355778999999999999965
No 44
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=2.7e-15 Score=118.78 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=82.7
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCC-ceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEe
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~ 190 (292)
+.+|+|+.|.|+|++++++||+++|||++..+...... .....++..+. ..+++...... ...+++|++|.
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf~ 73 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAFK 73 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEEE
Confidence 57899999999999999999999999987665321100 00011222221 24445432211 12378999999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 191 VE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 191 V~--Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
|+ |++++.++|+++|+++..+ .....+.++++||+|||||.|||.+.
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecC
Confidence 98 6999999999999987643 23334456789999999999999854
No 45
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=3.5e-15 Score=116.99 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=85.6
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhc---CCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC---CcCCCceEEE
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHF 187 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~g~g~~hi 187 (292)
+|+||+|.|.|++++.+||+++| ||++..... . ...|... ..+..+.+........ ...+.|++|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999877642 1 1233332 2235566665433221 1234578999
Q ss_pred EEeeCC---HHHHHHHHHHcCCeeecCCeec--CCCCeEEEEEECCCCCEEEEEE
Q 022769 188 GIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 188 a~~V~D---l~~~~~~L~~~G~~i~~~p~~~--~~g~~~~~y~~DPdG~~iel~e 237 (292)
+|.|+| +++++++|+++|+++...+... ..+..+++|++||+|++|||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 999974 8899999999999988766542 2345678999999999999985
No 46
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.1e-15 Score=115.89 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=83.3
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC--CcCCCceEEEEEeeCCH
Q 022769 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIAVEDV 194 (292)
Q Consensus 117 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~g~g~~hia~~V~Dl 194 (292)
||+|.|.|++++.+||+++|||++..+....+ ....+.+..... ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987653222 222233322211 134555554332211 11234788999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 195 ~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
++++++++++|+++..++... +..+.+|++||+|++|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREM--PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccC--CCceEEEEECCCCCEEEEeC
Confidence 999999999999998776333 34578999999999999974
No 47
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.67 E-value=2.3e-15 Score=121.27 Aligned_cols=113 Identities=22% Similarity=0.419 Sum_probs=84.8
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
.+|+|+.|.|.|++++++||+++|||++..... + ...|+..+...+ .+.+... ...+++|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 489999999999999999999999999865421 1 246676654432 3344321 1247899999999
Q ss_pred CHHHH---HHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 193 DVAKT---VDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 193 Dl~~~---~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
|++++ +++|+++|+++...+.....+...++||+||+|+.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 87766 489999999987665554444456789999999999999764
No 48
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=2.4e-15 Score=119.09 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=80.6
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC-
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED- 193 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D- 193 (292)
|+||.|.|+|++++++||+++|||++..... ...++..++ ..+.+......+......+++|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999865421 123444432 23444332221111123478999999974
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 194 -l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++++++|+++|+++..++.... +..+.+|++||+|++||+.+.
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecC
Confidence 99999999999999765443332 245789999999999999854
No 49
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.7e-15 Score=116.71 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=82.8
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCC-ceEEEEEeeCCCCceEEEEEEecCCCCC--CcCCCceEEEEEe
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIA 190 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~g~g~~hia~~ 190 (292)
+|+||+|.|.|++++.+||+++|||++..+....+. .....++.......+..+++........ .....+++|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 589999999999999999999999998776543221 1122333322112223566654322211 1122378999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 191 V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
|+| +++++++++++|+++...+. . ++.+.+|++||+|++||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 984 79999999999998865332 2 3567899999999999984
No 50
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.66 E-value=3.3e-15 Score=115.67 Aligned_cols=113 Identities=26% Similarity=0.343 Sum_probs=83.0
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+.+|+|+.|.|+|++++++||+++|||+...... . .+++..++. .++.+.+... ...+++|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 3689999999999999999999999999865422 1 345543332 2334443321 123678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecC-CCCeEEEEEECCCCCEEEEEEc
Q 022769 192 E---DVAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~---Dl~~~~~~L~~~G~~i~~~p~~~~-~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+ ++++++++++++|+++..++.... .+..+.+|++||+|++||++..
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 5 689999999999999876654332 2345678999999999999865
No 51
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.65 E-value=7.1e-15 Score=112.87 Aligned_cols=114 Identities=24% Similarity=0.231 Sum_probs=82.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCH
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 194 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl 194 (292)
+.|+.|.|+|++++++||+++||+++..... +... .+++..++. ..+.+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~--~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGD--YAVFSTGGG---AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCc--eEEEEeCCc---cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999876542 1122 344444431 122333222111 1223567899999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 195 ~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
++++++|+++|+++..+|...+ +..+.+|++||+|+.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999988877665 45578999999999999974
No 52
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=2.1e-15 Score=114.54 Aligned_cols=113 Identities=28% Similarity=0.365 Sum_probs=81.2
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCceEEEEEeeCC
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED 193 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~g~g~~hia~~V~D 193 (292)
|+|++|.|+|++++++||+++|||++..+...+ ....++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999986543221 12355555443 1334443222211 1123477899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 194 l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
+++++++++++|+++..++.. ....+.+|++||+|++||+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 999999999999998776543 2244678999999999996
No 53
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=6.3e-15 Score=113.46 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=80.4
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
+++|+|+.|.|+|++++.+||++ |||++..+.. ..+|+..++.. ++.+..... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTD-PFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCc-cEEEEcccC-------CcCcccEEEEEE
Confidence 46899999999999999999999 9999865531 13555543332 233322111 124788999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+|.+++.+.+++.|......+. .+. ..+++||+||+||.||++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 9999999999999998754332 233 34678999999999999854
No 54
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.64 E-value=2.3e-14 Score=113.37 Aligned_cols=120 Identities=25% Similarity=0.424 Sum_probs=84.3
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D 193 (292)
+|+|+.|.|+|++++++||+++|||++...... ....++..+.. .+..+.+.............+++|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765321 12455554311 2234444443222111223488999999997
Q ss_pred HH---HHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 194 VA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 194 l~---~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
++ +++++|.++|+++...+. .+..+.+|++||+|++|||+...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD---HGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC---CCceeEEEEECCCCCEEEEEEcCCC
Confidence 54 578999999998765432 2345788999999999999976544
No 55
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.63 E-value=1.1e-14 Score=113.79 Aligned_cols=111 Identities=16% Similarity=0.264 Sum_probs=81.5
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
+++.|+.|.|+|++++++||+++|||+..... +. .+++..++ +..+.+.... ...+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GP--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CC--EEEEEcCC---CcEEEEecCC------CCCCcceEEEEeC
Confidence 58999999999999999999999999986532 11 12333322 2344444321 1125679999887
Q ss_pred --CHHHHHHHHHHcCCeeecCCeec------CCCCeEEEEEECCCCCEEEEEEc
Q 022769 193 --DVAKTVDLVKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 193 --Dl~~~~~~L~~~G~~i~~~p~~~------~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
|+++++++|+++|+++..+|... ..++.+.+||+||||+.||+++.
T Consensus 68 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 69999999999999986665443 12456889999999999999986
No 56
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=7.8e-15 Score=114.49 Aligned_cols=119 Identities=30% Similarity=0.521 Sum_probs=85.6
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCC-CCceEEEEEeeCCCCceEEEEEEecCCC-CC-----CcCCCceEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDSHFVVELTYNYGV-DK-----YDIGTGFGHF 187 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~-----~~~g~g~~hi 187 (292)
|+||+|.|+|++++.+||+++|||+........ +.....+++..+ ...+++...... .. ...+.|+.|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 223345666543 245555543221 11 1245689999
Q ss_pred EEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCC--CCEEEEEE
Q 022769 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 237 (292)
Q Consensus 188 a~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPd--G~~iel~e 237 (292)
+|.|+|+++++++++++|+++..++.....++..+.++.+|+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999877664444444555555555 99999974
No 57
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.62 E-value=5.7e-14 Score=129.45 Aligned_cols=158 Identities=22% Similarity=0.345 Sum_probs=108.3
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC------CcCCCceEE
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGH 186 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~g~g~~h 186 (292)
++++|+.+.|+|++++.+||.+.|||+.........+. ....+..+ ...+++........ ...|.|+.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 47899999999999999999999999998763222222 12223322 24566654322210 125679999
Q ss_pred EEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC---------------------C----
Q 022769 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T---- 241 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~---------------------~---- 241 (292)
++|.|+|+++++++++++|+.+..+|.....|.....-++.++|..+.|+++.. .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999876655431122222223444455555444210 0
Q ss_pred CCCceeeeeecC--CHHHHHHHHHHhcCCEEEeeec
Q 022769 242 PEPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRD 275 (292)
Q Consensus 242 ~~~l~hv~l~v~--D~~~s~~fY~~~lG~~~~~~~~ 275 (292)
-.+++|++++|. |+++++.||+++|||++....+
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~ 191 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFD 191 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEE
Confidence 115899999999 9999999999999999987544
No 58
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1e-14 Score=113.36 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=78.9
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEe----cCCCCCCcCCCceEEEE
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY----NYGVDKYDIGTGFGHFG 188 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~----~~~~~~~~~g~g~~hia 188 (292)
+++.|+.|.|+|++++++||+++||+++..... .. ..+. +. ..+.... .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~--~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN--VTFE-GG----FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce--EEEe-cc----ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864321 11 1111 11 1111110 00011111233557999
Q ss_pred EeeCCHHHHHHHHHHcCC-eeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 189 IAVEDVAKTVDLVKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 189 ~~V~Dl~~~~~~L~~~G~-~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
|.|+|+++++++|+++|+ ++..+|...++| .+.+|++|||||+|||.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 999999999999999986 677777766654 5678999999999999864
No 59
>PRK06724 hypothetical protein; Provisional
Probab=99.62 E-value=2.1e-14 Score=113.36 Aligned_cols=111 Identities=16% Similarity=0.247 Sum_probs=77.3
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhc---CCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEE
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 188 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia 188 (292)
+.+|+||.|.|+|++++++||+++| |++...... + . ... ..+.+...... .....|..|+|
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g~--~~l~l~~~~~~--~~~~~g~~h~a 68 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TGE--SEIYFKEVDEE--IVRTLGPRHIC 68 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CCC--eeEEEecCCcc--ccCCCCceeEE
Confidence 5689999999999999999999966 666532111 1 0 111 11222211110 01234788999
Q ss_pred Eee---CCHHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEECCCCCEEEEEEc
Q 022769 189 IAV---EDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 189 ~~V---~Dl~~~~~~L~~~G~~i~~~p~~~~~--g~~~~~y~~DPdG~~iel~e~ 238 (292)
|.| +|+++++++|+++|+++..+|...+. ++.+++||+||||+.||+...
T Consensus 69 f~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 69 YQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 998 57999999999999998777765432 345788999999999999865
No 60
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.6e-14 Score=109.96 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=80.4
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC------CCcCCCceEEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD------KYDIGTGFGHFG 188 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~------~~~~g~g~~hia 188 (292)
|.||+|.|.|++++++||+++|||++.... ++. .+++..++. . .+.+....... ......++.|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~--~~~l~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRR--LAFFWVGGR-G--MLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCc--eEEEEcCCC-c--EEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 578999999999999999999999987641 122 355555543 2 23333321110 111234788999
Q ss_pred EeeC--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 189 IAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 189 ~~V~--Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
|.++ |++++++++.++|+++...+. . .+..+.+|++||+|++||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-C-CCCeeEEEEECCCCCEEEEec
Confidence 9985 799999999999998865543 2 334567999999999999986
No 61
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=3.5e-14 Score=109.84 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=78.7
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC-----CCcCCCceEEEEEee
Q 022769 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-----KYDIGTGFGHFGIAV 191 (292)
Q Consensus 117 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-----~~~~g~g~~hia~~V 191 (292)
+..|.|+|++++++||+++|||++..... . ...+..++. ...+.+....... ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----W--YVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----c--EEEEecCCC--ceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 56799999999999999999999876521 1 233333322 2344443321110 11123344 899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 192 ~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+|+++++++++++|+++..+|...+.| .+.++++||+|++|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 999999999999999987777666554 567899999999999975
No 62
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=2.4e-14 Score=111.55 Aligned_cols=108 Identities=29% Similarity=0.474 Sum_probs=77.8
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee--
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV-- 191 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V-- 191 (292)
+|+|+.|.|+|++++.+||+++|||++..... + ..++..+. ..+.+.+... . ....++.|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~--~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDAN--V---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCC--C---CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999865532 1 24444332 2223322211 1 1234788999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 192 ~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+|+++++++++++|+++..++.. ....+||+||||++|||+..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeC
Confidence 47999999999999987544322 23578999999999999964
No 63
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=4.5e-14 Score=109.96 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=78.4
Q ss_pred eEEEEEEcCCHHHHHHHHHHh---cCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEee
Q 022769 115 MLHVVYRVGDLDKTIKFYTEC---LGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V 191 (292)
|+|+.|.|+|++++++||+++ ||++...+.. + . .+++..+.... .+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-~--~~~~~~~~~~~--~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-G--AVGYGKGGGGP--DFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-c--eeEeccCCCCc--eEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 6998865431 1 1 23333322222 3333332211111 122457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEECCCCCEEEEE
Q 022769 192 ED---VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 192 ~D---l~~~~~~L~~~G~~i~~~p~~~~~--g~~~~~y~~DPdG~~iel~ 236 (292)
+| ++++++++.++|+.+..+|...+. ...+++|++||+|+.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998777665543 3445789999999999996
No 64
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.59 E-value=7.5e-14 Score=108.60 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=80.9
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC----CcCCCceEEEEEeeCCH
Q 022769 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFGHFGIAVEDV 194 (292)
Q Consensus 119 ~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~----~~~g~g~~hia~~V~Dl 194 (292)
.|.|+|++++++||+++||+++......+++....+.+..++ . .+.+........ ...+.+..|++|.|+|+
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--G--GVMVGSVRDDYRASSARAGGAGTQGVYVVVDDV 79 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--E--EEEEecCCCcccccccccCCCceEEEEEEECCH
Confidence 489999999999999999999987653333333334454432 1 222322111111 11234567899999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 195 ~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
++++++++++|+++..+|...+.| .+.++++||||++|+|.+
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 999999999999998887776654 466899999999999964
No 65
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=6.7e-14 Score=109.03 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=77.8
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEe---c---CC--CCCCcCCCceEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY---N---YG--VDKYDIGTGFGH 186 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~---~---~~--~~~~~~g~g~~h 186 (292)
+.|+.|.|+|++++.+||+++|||+...... .+.+. .+..+ ...+.+.... . .. ........+..|
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999865422 11121 11111 1111111110 0 00 011111123358
Q ss_pred EEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++|.|+|+++++++++++|+++..++...++| .+.++++||+|+.||++++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 99999999999999999999988777666654 4568999999999999863
No 66
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=4.1e-14 Score=110.12 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=75.2
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC-----CCCCcCCCceEEEEE--
Q 022769 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-----VDKYDIGTGFGHFGI-- 189 (292)
Q Consensus 117 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~~~g~g~~hia~-- 189 (292)
||.|.|+|++++++||+++|||++..... . ...+..+ +..+.+.+..... ........+..|+++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999864321 1 1222222 2233443332110 000111224567654
Q ss_pred eeCCHHHHHHHHHHcCCeeecCCeecC---CCCeEEEEEECCCCCEEEEEE
Q 022769 190 AVEDVAKTVDLVKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 190 ~V~Dl~~~~~~L~~~G~~i~~~p~~~~---~g~~~~~y~~DPdG~~iel~e 237 (292)
.++|+++++++|+++|+++..+|.... .+..+.+|++|||||+|||.+
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567899999999999999887665421 234578999999999999974
No 67
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4.7e-14 Score=107.99 Aligned_cols=109 Identities=23% Similarity=0.380 Sum_probs=77.3
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC--CH
Q 022769 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE--DV 194 (292)
Q Consensus 117 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~--Dl 194 (292)
||.|.|+|++++++||+++|||++..+.. ...++..+. ..+.+....... ..+.+++|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865532 123444331 234443322111 12347789999995 69
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 195 ~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++++++++++|+++...+. ...+..+.+|++||+|++||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERP-RVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCcc-ccCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999999864322 222345789999999999999853
No 68
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.57 E-value=1.2e-13 Score=105.83 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=78.3
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHH
Q 022769 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 197 (292)
Q Consensus 118 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~ 197 (292)
..|.|+|++++++||+++|||+..... + ...++..+.. .++.+.+...... +....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQN-MTVQVSLATEGGT-----ATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecCC-CCcEEEEecCCCC-----CCCCCEEEEEeCCHHHH
Confidence 458999999999999999999986431 1 2234443332 2334444432111 12456999999999999
Q ss_pred HHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 198 VDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 198 ~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++|+++|+++..++...++ +.+.+|+.||+|++|++.++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999999998877666554 34678999999999999975
No 69
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=9.6e-14 Score=107.67 Aligned_cols=111 Identities=28% Similarity=0.480 Sum_probs=78.2
Q ss_pred EEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC--
Q 022769 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (292)
Q Consensus 116 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D-- 193 (292)
.|+.|.|+|++++.+||+++||++...... .+ ..|. .+.. .+.+.+....... ..++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~-~~~~--~~~~~~~~~~~~~----~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFL-LEDP--RLNFVLNERPGAP----GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEE-ecCC--ceEEEEecCCCCC----CCCeeEEEEEeCCHH
Confidence 599999999999999999999998765421 11 2232 2222 2333333321111 1488999999987
Q ss_pred -HHHHHHHHHHcCCeeecCCeecC-CCCeEEEEEECCCCCEEEEEEc
Q 022769 194 -VAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 194 -l~~~~~~L~~~G~~i~~~p~~~~-~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++++++++.++|+++...+.... .+..+++|++||+|++|||++.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 78899999999999876543322 2234679999999999999974
No 70
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.56 E-value=2.6e-13 Score=104.98 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=83.4
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC--CCcCCCceEEEEEeeCCHH
Q 022769 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGHFGIAVEDVA 195 (292)
Q Consensus 118 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~--~~~~g~g~~hia~~V~Dl~ 195 (292)
..|.|+|++++.+||+++||+++......+++......+..++. .+.+....+.. ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS----VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE----EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 34889999999999999999999877554444444444544431 33443321110 1112346679999999999
Q ss_pred HHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 196 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 196 ~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++++++.+.|+++..++...+. +.+.++++||+|++|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEecC
Confidence 9999999999999877765554 45678999999999999863
No 71
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.56 E-value=1.2e-13 Score=104.68 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=74.8
Q ss_pred EEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHHHH
Q 022769 120 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 199 (292)
Q Consensus 120 L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~~~ 199 (292)
|.|+|++++++||+++|||++..... . .+.+..+.....-...+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----D--YVDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----S--EEEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----C--eEEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988432 1 2333332110001122222111 12234478899999999999999
Q ss_pred HHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 200 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 200 ~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
+++++|+++..+|...+. +.+.++++||+|++|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999998877776554 457899999999999986
No 72
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.55 E-value=1.5e-13 Score=105.55 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=73.6
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEE--Ee
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG--IA 190 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia--~~ 190 (292)
++|+||+|.|.|++++.+||+ .|||++..+.. ...+...+. .+..+.+.... ..++.|++ +.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCC--CceEEEeecCC-------CCceeeEEEEeE
Confidence 379999999999999999997 69999865421 122222222 23334443321 12455544 45
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 191 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 191 V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++|++++.++|+++|+++..++ .+. ....+||+||+||+|||...
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGA-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcC-CCCEEEEECCCCCEEEEecC
Confidence 5789999999999999987554 222 23468999999999999854
No 73
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.55 E-value=1.9e-13 Score=102.72 Aligned_cols=112 Identities=32% Similarity=0.422 Sum_probs=82.7
Q ss_pred EEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHH
Q 022769 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (292)
Q Consensus 117 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~ 196 (292)
|+++.|+|++++.+||+++|||+....... .....+++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998877532 11234555443 235555554332221234578999999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 197 ~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
++++|+++|+.+...+. ...+....+|+.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPR-EEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCc-CCCCCcEEEEEECCCCcEEeC
Confidence 99999999998876654 223456789999999999985
No 74
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3.1e-13 Score=103.74 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=77.3
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCceEEEEEeeCC---
Q 022769 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED--- 193 (292)
Q Consensus 118 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~g~g~~hia~~V~D--- 193 (292)
+.|.|+|++++++||+++||+++..... .+ +.+..++. ..+.++....... .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TF--ALFVLGSG---VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ce--EEEEeCCC---cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 5699999999999999999999765421 22 22332221 3445554332211 1123467899999986
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 194 l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
++++++++.++|+++..+|...+.| +.++++|||||+||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8889999999999998777666544 4689999999999997
No 75
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.51 E-value=9.1e-13 Score=100.36 Aligned_cols=109 Identities=28% Similarity=0.333 Sum_probs=77.6
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHHH
Q 022769 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (292)
Q Consensus 119 ~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~~ 198 (292)
.|.|+|++++++||+++|||++..... .. ..+++..+ +..+.+......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 489999999999999999999877643 11 12444432 234455443322211 2335668999999999999
Q ss_pred HHHHHcCCe-eecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 199 DLVKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 199 ~~L~~~G~~-i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
++++++|++ +..++...+. +.+.++++||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999998 5555554443 4567899999999999975
No 76
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.49 E-value=9e-13 Score=102.41 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=74.7
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecC------CCCCCcCCCceEEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY------GVDKYDIGTGFGHFG 188 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~------~~~~~~~g~g~~hia 188 (292)
|+||.|.|+|++++++||++ |||++....... ..+.+..++ . ..+.+.... +..+ ..+.+..|++
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~-~~~~~~~~l~ 71 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPG-G--VRLAWDTVESIRSFTPGWT-PTGGHRIALA 71 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCC-C--EEEEEEcccceeeecCCCC-CCCCCcEEEE
Confidence 57999999999999999975 999975432210 122333321 1 222222110 1111 1122456788
Q ss_pred EeeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 189 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 189 ~~V~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
|.+. |+++++++|+++|+++..+|...+.| .+.++++||+||.|||+
T Consensus 72 ~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 72 FLCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 8765 79999999999999988777666554 45689999999999996
No 77
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=8.4e-13 Score=103.08 Aligned_cols=113 Identities=24% Similarity=0.229 Sum_probs=75.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC-----CCCC--cCCCceEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-----VDKY--DIGTGFGHF 187 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~--~~g~g~~hi 187 (292)
+.++.|.|+|++++++||++ |||+.......+. ..++..++ ...+.+..... .... ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 35788999999999999987 9999764322111 12333332 12344433110 0000 122355699
Q ss_pred EEeeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 188 GIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 188 a~~V~---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+|.|+ |+++++++++++|+++..+|...++ .+.+|++|||||+||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99998 4889999999999999877665543 456899999999999974
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.45 E-value=1.6e-12 Score=99.48 Aligned_cols=94 Identities=28% Similarity=0.345 Sum_probs=75.0
Q ss_pred EEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCC--cCCCceEEEEEeeCC
Q 022769 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY--DIGTGFGHFGIAVED 193 (292)
Q Consensus 116 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~--~~g~g~~hia~~V~D 193 (292)
+||+|.|+|+++|++||+++||++.......+.......++..+... ..+++.++...... ..+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987776655666677777766533 57787775444321 256799999999999
Q ss_pred HHHHHHHHHHcCCeeecC
Q 022769 194 VAKTVDLVKAKGGKVTRE 211 (292)
Q Consensus 194 l~~~~~~L~~~G~~i~~~ 211 (292)
++++.++|+++|+++...
T Consensus 79 ~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp HHHHHHHHHHTTECEEEC
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 999999999999998755
No 79
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.43 E-value=4.9e-12 Score=98.18 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=73.4
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHH
Q 022769 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 197 (292)
Q Consensus 118 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~ 197 (292)
..|.|+|++++++||++ |||++...... . .+++..++ ..+.+....... ......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHHH
Confidence 45999999999999999 99998765321 1 23343332 244554432111 111234789999999999
Q ss_pred HHHHHHcCCeee-------cCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 198 VDLVKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 198 ~~~L~~~G~~i~-------~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++|+++|+++. .++...+ .+.+.++++||||++|||.+.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQP-WGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCC-CceeEEEEECCCCCEEEeecC
Confidence 999999999743 2222223 345779999999999999874
No 80
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.40 E-value=6.6e-12 Score=96.70 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=70.6
Q ss_pred EEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHHHHH
Q 022769 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (292)
Q Consensus 119 ~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~~~~ 198 (292)
.|.|+|++++++||++ |||++..+.. . .+++..++ ..+.+...... .. .+-.+++|.|+|+++++
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~--~~~l~~~~----~~l~l~~~~~~-~~---~~~~~~~~~v~did~~~ 70 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND----N--LAYFRLGN----CAFYLQDYYVK-DW---AENSMLHLEVDDLEAYY 70 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC----C--EEEEEcCC----EEEEeecCCCc-cc---ccCCEEEEEECCHHHHH
Confidence 4889999999999987 9999976531 1 35555432 23333321111 11 12247899999999999
Q ss_pred HHHHHcCCeeec-----CCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 199 DLVKAKGGKVTR-----EPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 199 ~~L~~~G~~i~~-----~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
++|+++|+++.. ++...++ +.+.++++|||||+|+|.+
T Consensus 71 ~~l~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 71 EHIKALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 999999987432 2233333 4578999999999999864
No 81
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.39 E-value=1.9e-11 Score=94.83 Aligned_cols=117 Identities=26% Similarity=0.322 Sum_probs=82.3
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D 193 (292)
.+.|..|.|.|++++++||+++|||+........+ +....+..+.....-.+.... . ..++..-..+.|.|+|
T Consensus 9 ~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~~--~---~~p~~~~~~iy~~v~d 81 (127)
T COG3324 9 TIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMARP--G---SPPGGGGWVIYFAVDD 81 (127)
T ss_pred ccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccCC--c---CCCCCCCEEEEEecCC
Confidence 34455599999999999999999999976644322 233444333221111221111 1 1121344568899999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 194 l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++..+++.++|..+..++...++ .++.+.+.||.||+|.|++.
T Consensus 82 id~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 82 IDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred hHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeec
Confidence 999999999999999999888875 55678899999999999864
No 82
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.39 E-value=5.8e-12 Score=97.24 Aligned_cols=110 Identities=26% Similarity=0.339 Sum_probs=74.7
Q ss_pred EEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC------CCCCcCCCceEEEEEee
Q 022769 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG------VDKYDIGTGFGHFGIAV 191 (292)
Q Consensus 118 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~------~~~~~~g~g~~hia~~V 191 (292)
|.|.|.|++++.+||+++|||++..+. .. ...++..++ ..+.+..... ......+.+-.|+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999986551 11 234444322 3454443211 11111122333466655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 192 ---EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 192 ---~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+|++++++++++.|+++..++...+.| .+.+|++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 579999999999999998776655543 677899999999999974
No 83
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.35 E-value=1.3e-10 Score=107.24 Aligned_cols=158 Identities=23% Similarity=0.299 Sum_probs=111.8
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCC--ceEEEEEeeCCCCceEEEEEEecCCC-----------------
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV----------------- 175 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~----------------- 175 (292)
++||++.|.|.+++..||+..|||+.+.......+ ......++.| .+.+.+......
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 58999999999999999999999999876543222 1222333322 234444433111
Q ss_pred --CC------CcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCC----CCeEEEEEECCCCCEEEEEEcCC---
Q 022769 176 --DK------YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 240 (292)
Q Consensus 176 --~~------~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~----g~~~~~y~~DPdG~~iel~e~~~--- 240 (292)
.. ..+|+|+.-++|+|+|++++++++.++|++...+|..... |.....-++.++|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 0256899999999999999999999999998766554422 22344456677778887776420
Q ss_pred -----------------C---CCCceeeeeecCCHHHHHHHHHHhcCCEEEeeecC
Q 022769 241 -----------------T---PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDN 276 (292)
Q Consensus 241 -----------------~---~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~ 276 (292)
. -.+|+|++++|.+++.+..||+++|||+.....+.
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~ 212 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTA 212 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeecc
Confidence 0 11699999999999999999999999999865544
No 84
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.5e-11 Score=94.39 Aligned_cols=118 Identities=31% Similarity=0.432 Sum_probs=80.6
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCc---------CCCc
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD---------IGTG 183 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~---------~g~g 183 (292)
+++.|+.|.+++..+...||...||++.......+..... +|+.... -.+++..+.+..... .+.|
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~----~~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRN----AKLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEeccc----CceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 4777888888888888888888888876554332222222 4443322 256666654432211 1249
Q ss_pred eEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCe-EEEEEECCCCCEEEEEEc
Q 022769 184 FGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNT-VIAFIEDPDGYKFELLER 238 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~-~~~y~~DPdG~~iel~e~ 238 (292)
++||+|.|+|++++.++|+++|++....+ +.|.. ..+++.||||++||+...
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~---~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKL---KDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecC---CCccccceeEEECCCCCeEEEeec
Confidence 99999999999999999999999976443 23333 578899999999999854
No 85
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.21 E-value=1.6e-10 Score=97.40 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=72.3
Q ss_pred cceEEEEEEcC--CHHHHHHHHHHhcCCEEEEEeeCCC--CceEEEEEeeCCCCceEEEEEEecCCC--CC-------Cc
Q 022769 113 RRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV--DK-------YD 179 (292)
Q Consensus 113 ~~i~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~~--~~-------~~ 179 (292)
++|+||++.|+ |++++.+||+++|||+.......++ .......+..+. ..+.+++...... .. ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 57999999999 9999999999999999887654332 223334444322 3456666654331 11 11
Q ss_pred CCCceEEEEEeeCCHHHHHHHHHHcCCeeecCC
Q 022769 180 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP 212 (292)
Q Consensus 180 ~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p 212 (292)
.|.|++||||.|+|+++++++|+++|+++...|
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 467999999999999999999999999987664
No 86
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.17 E-value=7.7e-11 Score=102.75 Aligned_cols=167 Identities=22% Similarity=0.349 Sum_probs=115.1
Q ss_pred CccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCC-----cCCCceE
Q 022769 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY-----DIGTGFG 185 (292)
Q Consensus 111 ~i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~-----~~g~g~~ 185 (292)
...+++||.+.|.|...+.+||...|||+.....+.+.+....+......+...+.+.-...+..+.+ .+|.|+.
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 36799999999999999999999999999877543222110011111111111122221111111111 2567888
Q ss_pred EEEEeeCCHHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEECCCCCEEEEEEcCCC-----------------C----
Q 022769 186 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT-----------------P---- 242 (292)
Q Consensus 186 hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~--g~~~~~y~~DPdG~~iel~e~~~~-----------------~---- 242 (292)
.+||+|+|++++.+.+.++|+++..+|....+ |..+.+.+..+......++++... |
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~~ 173 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLPK 173 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCCc
Confidence 99999999999999999999999888766543 556777777776666666655310 1
Q ss_pred ---CCceeeeeecC--CHHHHHHHHHHhcCCEEEeeecCC
Q 022769 243 ---EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNP 277 (292)
Q Consensus 243 ---~~l~hv~l~v~--D~~~s~~fY~~~lG~~~~~~~~~~ 277 (292)
.+++|++.+++ .++.+.+||.+.|||.-....+++
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~ 213 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDS 213 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcc
Confidence 27899999998 889999999999999988766544
No 87
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=98.09 Aligned_cols=170 Identities=28% Similarity=0.482 Sum_probs=120.8
Q ss_pred cccccccccchhhhhhhhhcCCeeeeccCCCCC---------------CCeeecCCccchhhhcc---CccceEEEEEEc
Q 022769 61 AAIPQSHFFGAKALKLLRAEGSTIEASTSGNMA---------------PTSNTVTEQNVLDWVKS---DKRRMLHVVYRV 122 (292)
Q Consensus 61 ~~~~~~~~~g~~~~~~~d~dg~~~~~~~~~~~~---------------~a~~~~~p~g~~~w~~~---~i~~i~Hv~L~V 122 (292)
+.++.+.++|...+.+.+ |...+.+.+++..+ ..+.+.+|+|....+.. ..-.+..|.|.|
T Consensus 79 FViELTYNYgV~~YelGn-dfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 79 FVIELTYNYGVSKYELGN-DFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred EEEEEEeccCccceeccC-CcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 466788888888888877 66667665554322 12457788885554431 245788999999
Q ss_pred CCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC--CHHHHHHH
Q 022769 123 GDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE--DVAKTVDL 200 (292)
Q Consensus 123 ~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~--Dl~~~~~~ 200 (292)
.|++++++||.+.|||++... +.+++.+.+++++++ +.|++....+...+. .|+..++|.++ ++..+.+.
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~q--~~LElt~~~~~id~~--kg~griafaip~d~~~~l~e~ 229 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDEQ--CVLELTYNYDVIDRA--KGFGRIAFAIPTDDLPKLQEA 229 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCcc--eEEEEEeccCccccc--ccceeEEEeccccccccHHHH
Confidence 999999999999999999875 234567888888775 788998877665544 35556666664 68888888
Q ss_pred HHHcCCeeecCCeecCC---CCeEEEEEECCCCCEEEEEEcC
Q 022769 201 VKAKGGKVTREPGPVKG---GNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 201 L~~~G~~i~~~p~~~~~---g~~~~~y~~DPdG~~iel~e~~ 239 (292)
++..+.++..+....+. -....+-+.||||+.+.|+...
T Consensus 230 iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 230 IKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred HHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 88887666544333322 1234566789999999999553
No 88
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.03 E-value=4.3e-09 Score=78.74 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=79.9
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCc----CCCceEEEE-
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD----IGTGFGHFG- 188 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~----~g~g~~hia- 188 (292)
-+-|+++.|+|++++++||-++||.+.-... ..|+...-.++.+.+.+.........+ .+.-+-|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst--------d~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRST--------DTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhccccccccc--------ceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 4569999999999999999999999874432 245555555666666655432211111 111223554
Q ss_pred -EeeCCHHHHHHHHHHcCCeeecCCeecC---CCCeEEEEEECCCCCEEEEEE
Q 022769 189 -IAVEDVAKTVDLVKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 189 -~~V~Dl~~~~~~L~~~G~~i~~~p~~~~---~g~~~~~y~~DPdG~~iel~e 237 (292)
+.++|--++.++|+++|+....+|...- .|....+++.||.||.+|+-.
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 5567888899999999988766554432 256778899999999999964
No 89
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.96 E-value=2.4e-09 Score=82.59 Aligned_cols=122 Identities=26% Similarity=0.430 Sum_probs=72.8
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCce---EEEEEeeCCCCceEEEEE--------EecCCCC-CCcC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY---TNAFLGYGPEDSHFVVEL--------TYNYGVD-KYDI 180 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~---~~~~l~~g~~~~~~~l~l--------~~~~~~~-~~~~ 180 (292)
++++||.|.|+|++++++||+++||+++........... ...+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 479999999999999999999999999987754322211 111211110000000000 0000000 0001
Q ss_pred C-CceEEEEEeeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 181 G-TGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 181 g-~g~~hia~~V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+ .+..|+++.+.+ .......+...|..+..... ...+ ..+|++||||+.||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~--~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGG--VHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcc--eEEEEECCCCcEEEeeC
Confidence 1 247799999998 56666677777887654333 2222 27999999999999973
No 90
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.95 E-value=4.9e-09 Score=96.72 Aligned_cols=100 Identities=20% Similarity=0.357 Sum_probs=71.1
Q ss_pred CccceEEEEEEcC--CHHHHHHHHHHhcCCEEEEEeeCCC--CceEEEEEeeCCCCceEEEEEEecCC---CC------C
Q 022769 111 DKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYG---VD------K 177 (292)
Q Consensus 111 ~i~~i~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~---~~------~ 177 (292)
.+++|+||++.|. |++++.+||+++|||+......... .......+... .+.+.+++..+.. .. .
T Consensus 155 ~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~--~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 155 GLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP--DGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC--CCcEEEEEeccCCCCCCCHHHHHHH
Confidence 3678999999999 9999999999999999877654322 11111222211 2235666665311 11 1
Q ss_pred CcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCC
Q 022769 178 YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP 212 (292)
Q Consensus 178 ~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p 212 (292)
...|.|++||||.|+|+++++++|+++|+++...|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 12367999999999999999999999999987665
No 91
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.90 E-value=1e-07 Score=74.92 Aligned_cols=110 Identities=13% Similarity=0.213 Sum_probs=72.4
Q ss_pred EEEc-CCHHHHHHHHHHhcCCEEEEEeeC----------CCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEE
Q 022769 119 VYRV-GDLDKTIKFYTECLGMKLLRKRDI----------PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 187 (292)
Q Consensus 119 ~L~V-~Dle~a~~FY~~vLG~~~~~~~~~----------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hi 187 (292)
.|.+ .|.++|++||+++||+++...... ..+.+..+.+..++. .+.+...........+ +-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~~~~-~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPFTFG-NGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCCCCC-CCEEE
Confidence 4667 899999999999999999876532 123334455554432 3333332221111122 33468
Q ss_pred EEeeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 188 GIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 188 a~~V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
++.|+| +++++++|.+.| ++..++...++| .+..+++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEe
Confidence 888886 777888987766 777777766654 4567899999999987
No 92
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.87 E-value=5.2e-08 Score=80.92 Aligned_cols=147 Identities=22% Similarity=0.308 Sum_probs=83.0
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC---C---CCC------cCCC
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG---V---DKY------DIGT 182 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~---~---~~~------~~g~ 182 (292)
|+|+++.|+|++++.++|++.|||.+......+........+.++.. .||+....+ . ..+ ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 78999999999999999988899999988777764555555555432 555554221 1 111 1357
Q ss_pred ceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCC--CeEEEEEECC----CCCEEEEEEcCC-C---------CCCce
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGG--NTVIAFIEDP----DGYKFELLERGP-T---------PEPLC 246 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g--~~~~~y~~DP----dG~~iel~e~~~-~---------~~~l~ 246 (292)
|+.++++.++|+++..+++++.|+... .....+++ ....+++.++ .+..=.+++... . ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 999999999999999999999997521 11111111 1234455553 234555553322 1 12789
Q ss_pred eeeeecCCHHHHHHHHHHhc
Q 022769 247 QVMLRVGDLDRAINFYKKAF 266 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~l 266 (292)
+|.+.+.|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999865
No 93
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=2.1e-07 Score=73.47 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=84.5
Q ss_pred EEEcC-CHHHHHHHHHHhcCCEEEEEeeCCC----------CceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCc-eEE
Q 022769 119 VYRVG-DLDKTIKFYTECLGMKLLRKRDIPE----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-FGH 186 (292)
Q Consensus 119 ~L~V~-Dle~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g-~~h 186 (292)
-|... |-++|++||+++||.++.......+ +....+.+..++. .+.+....+......+.+ -.-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeEE
Confidence 36677 9999999999999999988766555 4666666666532 333333322222222222 234
Q ss_pred EEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC
Q 022769 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~ 240 (292)
|.+.++|++++++++.+.|+++..++....+|. +...++||.|+.|.|.+...
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~-r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGD-RYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCccc-ceEEEECCCCCEEEEecCcc
Confidence 677888999999999999999998888887754 45779999999999986543
No 94
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.72 E-value=8.8e-08 Score=88.72 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=85.2
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCC-----ceEEEEEeeCCCCceEEEEEEecCCC----C------
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----RYTNAFLGYGPEDSHFVVELTYNYGV----D------ 176 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~l~l~~~~~~----~------ 176 (292)
..+|+||++.|.+++.+..||+++|||+..+....++. ......+..+. ..+.+++..+... .
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHHH
Confidence 56899999999999999999999999998765433221 12344444332 2356666664321 1
Q ss_pred CCcCCCceEEEEEeeCCHHHHHHHHHHc----CCeeecCCe---------ecC----C------CCeEEEEEECCCCCEE
Q 022769 177 KYDIGTGFGHFGIAVEDVAKTVDLVKAK----GGKVTREPG---------PVK----G------GNTVIAFIEDPDGYKF 233 (292)
Q Consensus 177 ~~~~g~g~~hia~~V~Dl~~~~~~L~~~----G~~i~~~p~---------~~~----~------g~~~~~y~~DPdG~~i 233 (292)
....|.|++||||.|+|+.++.++|+++ |++....|. +.+ . -....++=+|.+|.++
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LL 335 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLL 335 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEE
Confidence 1124689999999999999999999999 999876441 111 0 0012345556677888
Q ss_pred EEEEcC
Q 022769 234 ELLERG 239 (292)
Q Consensus 234 el~e~~ 239 (292)
.+++.+
T Consensus 336 QIFTkp 341 (398)
T PLN02875 336 QIFTKP 341 (398)
T ss_pred EEeccc
Confidence 887664
No 95
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.63 E-value=4.4e-07 Score=69.18 Aligned_cols=115 Identities=24% Similarity=0.295 Sum_probs=71.1
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCC-----CCCC--cCCCceEE
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-----VDKY--DIGTGFGH 186 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~--~~g~g~~h 186 (292)
++--|.|.|+|++++.+||+. |||+.-.+..... ....+ .+.. +.+.|..... ..+. .....-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi-~~~n---i~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMI-ISDN---IFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEE-Eecc---EEEEEeccHHhhhhcccccccccCCceEE
Confidence 455677999999999999996 9999855433221 11222 1221 2222222110 0000 01112234
Q ss_pred EEEeeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 187 FGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 187 ia~~V~D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
+++.+.+ ++++.++..+.|++...++... |..+..-+.||||+.||+.--
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~--gfMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDE--GFMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccc--ccccceeeeCCCCCeEEEEEe
Confidence 6777764 8899999999999986665554 445556789999999999854
No 96
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.59 E-value=3.2e-06 Score=64.20 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=64.2
Q ss_pred EEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCCHH
Q 022769 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 195 (292)
Q Consensus 116 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~Dl~ 195 (292)
-+-+|.|.|-+..++||+++|||++..+.. ..++++.......+.|+-.+...........-++++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 356799999999999999999999988754 24666554444555566554332222223347899999999876
Q ss_pred HHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEc
Q 022769 196 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (292)
Q Consensus 196 ~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~ 238 (292)
++ +.|.++|..+. ....+..++.+-..+|.|.+|.+...
T Consensus 76 EI-e~LLar~~~~~---~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 76 EI-EALLARGAQYD---RLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HH-HHHHHC-S--S---EEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HH-HHHHhcccccc---eeEEcCCceEEEEECCCCCEEEEEEc
Confidence 63 44455555432 22223344567778999999999854
No 97
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.36 E-value=4.6e-06 Score=74.61 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=99.1
Q ss_pred ccceEEEEEEcCCH-HHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCC----CCcCCCceEE
Q 022769 112 KRRMLHVVYRVGDL-DKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD----KYDIGTGFGH 186 (292)
Q Consensus 112 i~~i~Hv~L~V~Dl-e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~----~~~~g~g~~h 186 (292)
-+++.+|.+.|.|. ++..+++ ..|||....+-... . ..+| +.| .+.+.+....... ...+|+++..
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~Hrsk--~-v~l~-rQG----dinlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALL-GQLGFTAVAKHRSK--A-VTLY-RQG----DINLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHH-HHhCcccccccccc--c-eeEE-EeC----CEEEEEcCCCcchhhHHHHhcCCchhe
Confidence 45899999999999 5555555 46999887653221 1 1122 112 2334333322110 1126778889
Q ss_pred EEEeeCCHHHHHHHHHHcCCeeecCCe---e--cC---CCCeEEEEEECCCCC--E--EEEEEcC--C--C---CCCcee
Q 022769 187 FGIAVEDVAKTVDLVKAKGGKVTREPG---P--VK---GGNTVIAFIEDPDGY--K--FELLERG--P--T---PEPLCQ 247 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~~G~~i~~~p~---~--~~---~g~~~~~y~~DPdG~--~--iel~e~~--~--~---~~~l~h 247 (292)
++|.|+|...++++.++.|.+....+. . ++ +-+...+||.|..|. . .++...+ + . ...|+|
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDH 170 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDH 170 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeech
Confidence 999999999999999999985322211 1 11 112346788888731 1 1121111 1 1 127999
Q ss_pred eeeec--CCHHHHHHHHHHhcCCEEEeeecCC
Q 022769 248 VMLRV--GDLDRAINFYKKAFGMELLRKRDNP 277 (292)
Q Consensus 248 v~l~v--~D~~~s~~fY~~~lG~~~~~~~~~~ 277 (292)
+++++ ..++....||+++|||+..+..+-+
T Consensus 171 l~~nv~~~~md~w~~FY~~if~~~~~~~fdi~ 202 (363)
T COG3185 171 LTHNVKAGQMDTWVLFYESLFGFREIQYFDIP 202 (363)
T ss_pred hhhhcchhhHHHHHHHHHHHhCccceeeEecc
Confidence 98877 5999999999999999999877654
No 98
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=4.2e-06 Score=75.36 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=68.0
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeC
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~ 192 (292)
-++-||+|.|+|++++++||+++||+.. ...+ . .+-+ + ..-+.+-+... .. ....-.-+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~--a~cm--~--dtI~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----K--LFLL--G--KTSLYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----c--cccc--c--CcEEEEEecCC-CC----CCcceEEEEeccC
Confidence 4778999999999999999999988874 2211 1 1111 1 11122222222 11 1112334778887
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEE
Q 022769 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (292)
Q Consensus 193 D---l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e 237 (292)
+ ++++.++..++|++...++.++ |. .--|.||||+.||++-
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~--Gf--~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGH--FP--LRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccc--cC--cceeECCCCCEEEEEE
Confidence 5 8889999999999765554444 33 2347999999999974
No 99
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.23 E-value=2.6e-06 Score=66.95 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=37.9
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCC-----------CcEEEEEcCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKVNSYLLPP 288 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~ 288 (292)
++.|++++|+|+++|++||+++|||++.++.++++ ++|...++++
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 57 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGY 57 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEec
Confidence 67899999999999999999999999988777776 5666666643
No 100
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.17 E-value=1.8e-05 Score=60.27 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=68.4
Q ss_pred EEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCC-CEEEEEEcCCCC-------CCceeeeeecCCH
Q 022769 185 GHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDG-YKFELLERGPTP-------EPLCQVMLRVGDL 255 (292)
Q Consensus 185 ~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG-~~iel~e~~~~~-------~~l~hv~l~v~D~ 255 (292)
+|++|.|+|++++.+.+.+ .|+..... ...+.......++..++| ..|||++..... ..+.|+++.|.|+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~-~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~ 79 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWER-YRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDL 79 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEE-EEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEE-EecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCH
Confidence 5999999999999999998 88875433 233333445566778887 789999876442 4799999999999
Q ss_pred HHHHHHHHHhcCCEEEeee
Q 022769 256 DRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 256 ~~s~~fY~~~lG~~~~~~~ 274 (292)
+++.+-+.+ .|+++....
T Consensus 80 d~~~~~l~~-~G~~~~~~~ 97 (109)
T PF13669_consen 80 DAAIARLEA-QGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHH-TTECEEECE
T ss_pred HHHHHHHHH-CCCEEcccC
Confidence 999999976 799998754
No 101
>PLN02367 lactoylglutathione lyase
Probab=98.11 E-value=6e-06 Score=71.03 Aligned_cols=46 Identities=30% Similarity=0.613 Sum_probs=42.8
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
.+.|++|+|.|++++++||+++|||++.++.++++.+++++|++++
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~ 120 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYE 120 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecC
Confidence 6899999999999999999999999999988899999999999753
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=8.8e-06 Score=72.80 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=69.7
Q ss_pred ccceEEEEEEcC--CHHHHHHHHHHhcCCEEEEEeeCCCC---ceEEEEEeeCCCCceEEEEEEecCCCCC-------Cc
Q 022769 112 KRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPED---RYTNAFLGYGPEDSHFVVELTYNYGVDK-------YD 179 (292)
Q Consensus 112 i~~i~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~---~~~~~~l~~g~~~~~~~l~l~~~~~~~~-------~~ 179 (292)
...|+|+++.|. .++.+..||+++|||+.....+.++. -...++.+ ..+.+.|.+........ ..
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S---p~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS---PCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec---CCCcEEeecccCCCchhHHHHHHHHh
Confidence 468999998875 79999999999999999877655432 12222222 12234555544332222 12
Q ss_pred CCCceEEEEEeeCCHHHHHHHHHHcCCeeecCC
Q 022769 180 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP 212 (292)
Q Consensus 180 ~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p 212 (292)
.|.|+.||||.++|+-++.++|+++|++....|
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 678999999999999999999999999876543
No 103
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.05 E-value=6.3e-05 Score=59.75 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC----CcCCCceEEE
Q 022769 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFGHF 187 (292)
Q Consensus 112 i~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~----~~~g~g~~hi 187 (292)
..+++||.+.+.+.+++..+++ .|||+.+.+-... . ..+| +.| . +.+.+...+.... ..+|+++.-+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~-v~l~-rQG--~--I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--D-VTLY-RQG--D--INFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--S-EEEE-EET--T--EEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--c-eEEE-EeC--C--EEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 4689999999999888888886 5999998764322 1 1222 323 2 3444443222111 1257899999
Q ss_pred EEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC
Q 022769 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (292)
Q Consensus 188 a~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~ 241 (292)
+|+|+|.++++++..+.|.+...++.. .+....--++.++|.++.|+++...
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~--~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTG--PGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEE--TT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCC--CCcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999987654322 2344556688999999999987544
No 104
>PRK10148 hypothetical protein; Provisional
Probab=98.03 E-value=0.00055 Score=55.16 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEEcC-CHHHHHHHHHHhcCCEEEEEee---C-----------------CCCceEEEEEeeCCCCceEEEEEEecCCCCC
Q 022769 119 VYRVG-DLDKTIKFYTECLGMKLLRKRD---I-----------------PEDRYTNAFLGYGPEDSHFVVELTYNYGVDK 177 (292)
Q Consensus 119 ~L~V~-Dle~a~~FY~~vLG~~~~~~~~---~-----------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~ 177 (292)
.|... |.++|++||+++||.++..... . +++....+.+..++. .+.+.......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~~~~~- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDAIPSG- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECCCCCc-
Confidence 45564 8999999999999988764421 0 123445566665532 23332221111
Q ss_pred CcCCCceEEEEEeeCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCCC
Q 022769 178 YDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 242 (292)
Q Consensus 178 ~~~g~g~~hia~~V~Dl~~---~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~~ 242 (292)
...+. -.++.+.++|.++ ++++| +.|+++..++....++. +...++||.|+.|.|......|
T Consensus 81 ~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~-~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 KAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAH-GFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhh-ccEEEECCCCCEEEEEecCCCC
Confidence 11122 2357778888665 56666 58888888877776644 4578999999999998765443
No 105
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=98.01 E-value=1.1e-05 Score=67.53 Aligned_cols=46 Identities=33% Similarity=0.636 Sum_probs=41.8
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
++.|++|.|.|+++|++||+++|||++..+.+.++..++++|++++
T Consensus 27 ~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~ 72 (185)
T PLN03042 27 IMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 72 (185)
T ss_pred EEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecC
Confidence 7999999999999999999999999999887788888999998653
No 106
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=97.89 E-value=3.4e-05 Score=62.13 Aligned_cols=50 Identities=44% Similarity=0.748 Sum_probs=40.7
Q ss_pred CCCCCceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 240 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 240 ~~~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
....+++|+.|.|.|++++.+||+++|||++..+.+.++.++..++++.+
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~ 62 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYG 62 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCC
Confidence 34568999999999999999999999999998766666666666666543
No 107
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=97.74 E-value=8.8e-05 Score=59.38 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCCceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCc-EEEEEcCC
Q 022769 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK-VNSYLLPP 288 (292)
Q Consensus 242 ~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~-~~~~~~~~ 288 (292)
..+++|++|.|+|++++.+||+++|||++.++...++.. ....|++.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~ 51 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSC 51 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEec
Confidence 457999999999999999999999999988765443332 23445443
No 108
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.73 E-value=5.8e-05 Score=57.97 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=33.3
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLP 287 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~ 287 (292)
+++|+.|.|.|++++++||+++|||++......+...+..+|+.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~ 44 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLS 44 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEe
Confidence 47899999999999999999999999875543333334444443
No 109
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.71 E-value=0.0011 Score=52.33 Aligned_cols=90 Identities=27% Similarity=0.417 Sum_probs=64.8
Q ss_pred ceEEEEEeeCCHHHHHHHHHHcCCeeecCCeec----------CCCCeEEEEEECCCC-CEEEEEEcC-C----------
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPV----------KGGNTVIAFIEDPDG-YKFELLERG-P---------- 240 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~----------~~g~~~~~y~~DPdG-~~iel~e~~-~---------- 240 (292)
+++|+++.|.|++++.+...+.|.++....... ..+.....++..|+| ..+|+.+.. +
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 689999999999999998888998765332110 112234455666655 679998732 1
Q ss_pred -CCCCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 241 -TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 241 -~~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
....+.|+++.|.|++++.+...+ .|.++...
T Consensus 83 ~~~~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~ 115 (142)
T cd08353 83 VNALGLRRVMFAVDDIDARVARLRK-HGAELVGE 115 (142)
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHH-CCCceeCC
Confidence 012578999999999999999975 79998863
No 110
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=97.65 E-value=0.00011 Score=56.34 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=35.5
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeec--CCCCcEEEEEcCCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRD--NPDYKVNSYLLPPN 289 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~--~~~~~~~~~~~~~~ 289 (292)
+|+||++.|.|++++++||+++|||++..... .........++..+
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 48 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG 48 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc
Confidence 48999999999999999999999999998765 22333444444443
No 111
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=97.57 E-value=0.00017 Score=55.13 Aligned_cols=45 Identities=38% Similarity=0.695 Sum_probs=36.4
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
+.|+.+.|+|++++.+||+++|||++....+.++..+..+++..+
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~ 45 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYP 45 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCC
Confidence 579999999999999999999999998765555545666666653
No 112
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=97.56 E-value=8.7e-05 Score=57.36 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=35.0
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPP 288 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~ 288 (292)
+++|+.+.|.|++++.+||+++|||++......++..+..+++..
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~ 45 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIAL 45 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEec
Confidence 578999999999999999999999999865434444445555543
No 113
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.55 E-value=0.0025 Score=48.85 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=71.2
Q ss_pred eEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC-----------CCCceeeeee
Q 022769 184 FGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------PEPLCQVMLR 251 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~-----------~~~l~hv~l~ 251 (292)
+.|+++.|+|++++.+.+.+ .|..........+.+.....++.. +|..+++.+.... ...+.|+.+.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~ 79 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFE 79 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEE
Confidence 46999999999999998876 788775432211122233444544 6788888865321 2357899999
Q ss_pred cCCHHHHHHHHHHhcCCEEEeeec-CCCCcEEEEEcCCC
Q 022769 252 VGDLDRAINFYKKAFGMELLRKRD-NPDYKVNSYLLPPN 289 (292)
Q Consensus 252 v~D~~~s~~fY~~~lG~~~~~~~~-~~~~~~~~~~~~~~ 289 (292)
|.|++++.+...+ .|.++..... .....+.+.|+.+.
T Consensus 80 v~d~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~d~~ 117 (128)
T cd07249 80 VDDIDAALARLKA-QGVRLLQEGPRIGAGGKRVAFLHPK 117 (128)
T ss_pred eCCHHHHHHHHHH-CCCeeeccCCCccCCCCEEEEEecC
Confidence 9999999999965 7999877543 34445566666554
No 114
>PRK10291 glyoxalase I; Provisional
Probab=97.46 E-value=0.00026 Score=55.25 Aligned_cols=41 Identities=49% Similarity=0.893 Sum_probs=34.4
Q ss_pred eeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 249 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 249 ~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
+|.|.|++++++||+++|||++......++..+..+|+..+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~ 41 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYG 41 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccC
Confidence 47899999999999999999998766677777778777654
No 115
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.36 E-value=0.0081 Score=45.65 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=62.7
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC--------CCCCceeeeeecC
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP--------TPEPLCQVMLRVG 253 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~--------~~~~l~hv~l~v~ 253 (292)
+++|+++.|+|++++.+.+++ .|+.+..... .+.+....+.+..+++..++++.... ....+.|+.+.|.
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~ 81 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVY-RPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVE 81 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeee-cCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeC
Confidence 788999999999999998874 8988754321 11112222334456777888875432 1236789999999
Q ss_pred CHHHHHHHHHHhcCCEEEee
Q 022769 254 DLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 254 D~~~s~~fY~~~lG~~~~~~ 273 (292)
|++++.+...+ .|.++...
T Consensus 82 d~~~~~~~l~~-~G~~~~~~ 100 (125)
T cd08352 82 DIEAAVKHLKA-KGVEVEPI 100 (125)
T ss_pred CHHHHHHHHHH-cCCccccc
Confidence 99999988865 79887764
No 116
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=97.29 E-value=0.00053 Score=55.53 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCCCceeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 241 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 241 ~~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
.+.+|+|+.|.|.|++++.+||+++|||++.++.
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~ 39 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEI 39 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEE
Confidence 3568999999999999999999999999987753
No 117
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=97.20 E-value=0.00034 Score=53.84 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=28.0
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+|+||+|.|+|+++|.+||+++|||++..+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 689999999999999999999999998764
No 118
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=97.20 E-value=0.00047 Score=54.24 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=30.0
Q ss_pred CCCceeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 242 ~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
|.+++|+.|.|.|++++.+||+++|||++.+..
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEe
Confidence 457999999999999999999999999998754
No 119
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.15 E-value=0.014 Score=44.48 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=63.6
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECC---CCCEEEEEEcCCC-------CCCceeeeee
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDP---DGYKFELLERGPT-------PEPLCQVMLR 251 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DP---dG~~iel~e~~~~-------~~~l~hv~l~ 251 (292)
|++|+++.|+|++++.+.+++ .|++................++.+. .|..+++++.... ...+.|+.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 578999999999999998876 6987653321111111233455554 6778888865321 2357899999
Q ss_pred cCCH---HHHHHHHHHhcCCEEEeeecCCCCcEEEEEc
Q 022769 252 VGDL---DRAINFYKKAFGMELLRKRDNPDYKVNSYLL 286 (292)
Q Consensus 252 v~D~---~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~ 286 (292)
+.|. ++..+-..+ .|.++.+.... ...+.++|.
T Consensus 81 v~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~ 116 (126)
T cd08346 81 VPSEASLDAWRERLRA-AGVPVSGVVDH-FGERSIYFE 116 (126)
T ss_pred cCCHHHHHHHHHHHHH-cCCcccceEee-cceEEEEEE
Confidence 9854 666666654 68877653222 333444443
No 120
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=97.13 E-value=0.00048 Score=53.02 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=28.7
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.+++|+.|.|+|++++.+||+++|||++...
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 4789999999999999999999999998765
No 121
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=97.08 E-value=0.0011 Score=51.84 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=31.5
Q ss_pred eeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcC
Q 022769 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLP 287 (292)
Q Consensus 246 ~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~ 287 (292)
+||.|.|+|++++.+||+++|||++......+ ......|+.
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~ 41 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLR 41 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEE
Confidence 58999999999999999999999998765433 323344443
No 122
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00037 Score=61.58 Aligned_cols=126 Identities=19% Similarity=0.372 Sum_probs=82.3
Q ss_pred ccceEEEEEEcC--CHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEe-----eCCCCceEEEEEEecCCCCC-------
Q 022769 112 KRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLG-----YGPEDSHFVVELTYNYGVDK------- 177 (292)
Q Consensus 112 i~~i~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~-----~g~~~~~~~l~l~~~~~~~~------- 177 (292)
+.+|+|++..++ .++.+.+||.+.|||.-.+..+.+. ....+.+ .......+.+.+..+.+..+
T Consensus 176 ~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~--v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 176 LNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQ--VHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred eeehhhhhccCCcccchHHHHHHHHhhcccccccCCcch--hhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 459999999999 6899999999999998877654322 1111110 11223334444444322221
Q ss_pred ---CcCCCceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCC------C--------------CeEEEEEECCCCCEEE
Q 022769 178 ---YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG------G--------------NTVIAFIEDPDGYKFE 234 (292)
Q Consensus 178 ---~~~g~g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~------g--------------~~~~~y~~DPdG~~ie 234 (292)
+..|.|+.||++.++|+-.+.+.|+++|+.....|...-. . ....+.=.|-+|+++.
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 2357899999999999999999999999988765432100 0 0122334477899999
Q ss_pred EEEcC
Q 022769 235 LLERG 239 (292)
Q Consensus 235 l~e~~ 239 (292)
|++.+
T Consensus 334 IFTKp 338 (381)
T KOG0638|consen 334 IFTKP 338 (381)
T ss_pred eeccc
Confidence 99764
No 123
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=97.03 E-value=0.00072 Score=51.97 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.+++|+.|.|+|++++.+||+++|||++.++
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 4789999999999999999999999999875
No 124
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=97.02 E-value=0.028 Score=44.13 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=64.8
Q ss_pred eEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC-----------CCCCceeeeee
Q 022769 184 FGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP-----------TPEPLCQVMLR 251 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~-----------~~~~l~hv~l~ 251 (292)
++|+.+.|+|+++..+.+++ .|+++.... .........+. .++..+++.+... ....+.|+.+.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~---~~~~~~~~~~~-~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~ 76 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYH---GSEDKASYLLR-QGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFR 76 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEec---CCCceEEEEEE-cCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEE
Confidence 47999999999999998888 899875431 11112233343 3456677765332 12357899999
Q ss_pred cCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEc
Q 022769 252 VGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLL 286 (292)
Q Consensus 252 v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~ 286 (292)
|.|++++.+-..+ .|.++.............+|.
T Consensus 77 V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i 110 (136)
T cd08342 77 VDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAI 110 (136)
T ss_pred eCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEE
Confidence 9999999999964 899998644332333344443
No 125
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=97.02 E-value=0.0013 Score=49.76 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=30.6
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEE
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNS 283 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~ 283 (292)
+.|+.|.|+|++++.+||+++||+++.+... ++..|..
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~ 38 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAV 38 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEE
Confidence 4799999999999999999999999987643 2334443
No 126
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=97.01 E-value=0.022 Score=43.13 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=64.8
Q ss_pred ceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECC-CCCEEEEEEcCCCCCCceeeeeecCCHHHHHHH
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDP-DGYKFELLERGPTPEPLCQVMLRVGDLDRAINF 261 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DP-dG~~iel~e~~~~~~~l~hv~l~v~D~~~s~~f 261 (292)
++.|+.+.|+|++++.+...+.|.+.... ..+ ..|++-. +...+.+... ....++.|+.+.|.|.++..+.
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~----~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~af~v~~~~~~~~~ 74 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAAR----TDD---ELYYRGYGTDPFVYVARK-GEKARFVGAAFEAASRADLEKA 74 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEEe----cCC---eEEEecCCCccEEEEccc-CCcCcccEEEEEECCHHHHHHH
Confidence 67899999999999999888889876432 111 2455533 2333333332 2335789999999999988888
Q ss_pred HHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 262 YKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 262 Y~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
. +.+|.+.......+...+.++|..++
T Consensus 75 ~-~~~g~~~~~~~~~~~~~~~~~~~DPd 101 (113)
T cd07267 75 A-ALPGASVIDDLEAPGGGKRVTLTDPD 101 (113)
T ss_pred H-HcCCCeeecCCCCCCCceEEEEECCC
Confidence 6 46888776533334555666665543
No 127
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.98 E-value=0.00062 Score=52.85 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.5
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.+|+|+.|.|+|++++.+||+++|||++.++
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 3689999999999999999999999998764
No 128
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=96.96 E-value=0.02 Score=42.33 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=66.0
Q ss_pred eEEEEEeeCCHHHHHHHHH-HcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC------CCCceeeeeecCCHH
Q 022769 184 FGHFGIAVEDVAKTVDLVK-AKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------PEPLCQVMLRVGDLD 256 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~-~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~------~~~l~hv~l~v~D~~ 256 (292)
++|+++.|+|++++.+.+. ..|......+... ....++..+++..+++...... ...+.|+.+.+.|++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~ 76 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL----FPGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLD 76 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC----CCceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEeCCHH
Confidence 4799999999999988775 6687764332111 1123455555567888765432 346789999999999
Q ss_pred HHHHHHHHhcCCEEEeeecCCCCcEEEEEcC
Q 022769 257 RAINFYKKAFGMELLRKRDNPDYKVNSYLLP 287 (292)
Q Consensus 257 ~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~ 287 (292)
+..+-..+ .|.++..........+.+++..
T Consensus 77 ~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~D 106 (114)
T cd07245 77 AFRARLKA-AGVPYTESDVPGDGVRQLFVRD 106 (114)
T ss_pred HHHHHHHH-cCCCcccccCCCCCccEEEEEC
Confidence 99999975 7999887533223334444443
No 129
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=96.95 E-value=0.0018 Score=50.57 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=37.5
Q ss_pred CCCceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcC
Q 022769 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLP 287 (292)
Q Consensus 242 ~~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~ 287 (292)
...+.|..|.+.|++++.+||+++|||+..+..+..+.+|..+...
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~ 52 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPAD 52 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECC
Confidence 4578899999999999999999999999999755545667666443
No 130
>PRK11478 putative lyase; Provisional
Probab=96.93 E-value=0.032 Score=42.91 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=59.3
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCC--------CCCCceeeeeecC
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP--------TPEPLCQVMLRVG 253 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~--------~~~~l~hv~l~v~ 253 (292)
+++|+++.|+|++++.+...+ .|.++..... .+........+.-.++..+++++... ....+.|+.+.+.
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v~ 84 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVY-REARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVD 84 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEeccccc-ccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEEEeC
Confidence 678999999999999998865 6988753211 11101111122223467888876321 1235789999999
Q ss_pred CHHHHHHHHHHhcCCEEEee
Q 022769 254 DLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 254 D~~~s~~fY~~~lG~~~~~~ 273 (292)
|++++.+-..+ .|.++...
T Consensus 85 d~~~~~~~l~~-~G~~~~~~ 103 (129)
T PRK11478 85 DIDAAVAHLES-HNVKCEAI 103 (129)
T ss_pred CHHHHHHHHHH-cCCeeecc
Confidence 99999998865 89998653
No 131
>PRK06724 hypothetical protein; Provisional
Probab=96.91 E-value=0.002 Score=50.49 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=26.0
Q ss_pred CCceeeeeecCCHHHHHHHHHHhc---CCEEEe
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAF---GMELLR 272 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~l---G~~~~~ 272 (292)
..++||.|.|+|+++|.+||+++| ||+...
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~ 38 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLN 38 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEee
Confidence 469999999999999999999955 777753
No 132
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=96.91 E-value=0.012 Score=49.54 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=66.4
Q ss_pred ceEEEEEeeC--CHHHHHHHHHH-cCCeeecCCeec-CCCCeEEEEEECCCC-CEEEEEEcCC--C------------CC
Q 022769 183 GFGHFGIAVE--DVAKTVDLVKA-KGGKVTREPGPV-KGGNTVIAFIEDPDG-YKFELLERGP--T------------PE 243 (292)
Q Consensus 183 g~~hia~~V~--Dl~~~~~~L~~-~G~~i~~~p~~~-~~g~~~~~y~~DPdG-~~iel~e~~~--~------------~~ 243 (292)
++.|+++.|+ |++++.+..++ .|.+........ +.....+..+..|+| ..+++.+... . ..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~ 82 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGA 82 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCC
Confidence 6889999999 99999998865 788765431111 123445667777765 6788887544 1 24
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
++.|+++.|.|++++.+-.++ -|.+....
T Consensus 83 Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~~ 111 (191)
T cd07250 83 GVQHIALATDDIFATVAALRA-RGVEFLPI 111 (191)
T ss_pred ceeEEEEECCCHHHHHHHHHH-cCCeeccC
Confidence 788999999999999999975 79888754
No 133
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.87 E-value=0.032 Score=41.78 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=67.3
Q ss_pred EEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCC--CEEEEEEcCCC-------CCCceeeeeecCCH
Q 022769 186 HFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDG--YKFELLERGPT-------PEPLCQVMLRVGDL 255 (292)
Q Consensus 186 hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG--~~iel~e~~~~-------~~~l~hv~l~v~D~ 255 (292)
|+++.|.|+++..+.+.+ .|+++...... .+....+.+.++++ ..+++...... .....|+.+.|.|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPM--GGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeecc--CCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 789999999999998876 89887643221 11233455666654 45666543322 34677999999999
Q ss_pred HHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCC
Q 022769 256 DRAINFYKKAFGMELLRKRDNPDYKVNSYLLPP 288 (292)
Q Consensus 256 ~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~ 288 (292)
+++.+...+ .|.++..........+..++..+
T Consensus 79 ~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~DP 110 (119)
T cd07263 79 DATYEELKA-RGVEFSEEPREMPYGTVAVFRDP 110 (119)
T ss_pred HHHHHHHHh-CCCEEeeccccCCCceEEEEECC
Confidence 999999975 99998875533334455554433
No 134
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=96.86 E-value=0.0014 Score=50.41 Aligned_cols=30 Identities=30% Similarity=0.633 Sum_probs=27.8
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+++|+.|.|+|++++.+||+++|||++...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 578999999999999999999999998764
No 135
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=96.84 E-value=0.0018 Score=50.59 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=28.3
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
+++|+.+.|.|++++.+||+++|||++....
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeec
Confidence 5899999999999999999999999987653
No 136
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=96.81 E-value=0.022 Score=46.40 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=62.9
Q ss_pred CceEEEEEeeCCHHHHHHHHHH-cCCeeecCCee-----------------cCCCCeEEEEEECCCCCEEEEEEcCCC--
Q 022769 182 TGFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGP-----------------VKGGNTVIAFIEDPDGYKFELLERGPT-- 241 (292)
Q Consensus 182 ~g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~-----------------~~~g~~~~~y~~DPdG~~iel~e~~~~-- 241 (292)
.+++|+++.|.|+++..+-.++ .|.++..++.. ..+......++..++|..||+++....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 3789999999999999998876 69876422110 001113445666677888999986421
Q ss_pred --------CCCceeeeeecCCHHHHHHHHHHhcCCEE
Q 022769 242 --------PEPLCQVMLRVGDLDRAINFYKKAFGMEL 270 (292)
Q Consensus 242 --------~~~l~hv~l~v~D~~~s~~fY~~~lG~~~ 270 (292)
..++.|+++.|.|+++..+..++ .|.++
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~-~G~~~ 118 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVA-AGGKK 118 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHH-cCCcc
Confidence 13578999999999999999976 67654
No 137
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=96.78 E-value=0.0016 Score=49.30 Aligned_cols=31 Identities=32% Similarity=0.666 Sum_probs=28.8
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
+++|+.|.|.|++++.+||+++|||++....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 6899999999999999999999999999753
No 138
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0017 Score=49.37 Aligned_cols=34 Identities=32% Similarity=0.625 Sum_probs=30.5
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP 277 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~ 277 (292)
++.|+.+.|+|++++.+||+++|||++.......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~ 35 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNE 35 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccc
Confidence 5789999999999999999999999999875443
No 139
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.75 E-value=0.0016 Score=51.95 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=26.6
Q ss_pred eeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 246 CQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 246 ~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
+||.|.|+|++++.+||+++|||+++++.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~ 29 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLI 29 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeee
Confidence 58999999999999999999999987763
No 140
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.74 E-value=0.048 Score=41.88 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=57.4
Q ss_pred ceEEEEEeeCCHHHHHHHHHHc----CCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC--------CCCceeeee
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAK----GGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT--------PEPLCQVML 250 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~----G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~--------~~~l~hv~l 250 (292)
|++|+.+.|+|++++.+.+.+. |.+..... +.+ ..|+...++..+++.+.... ...+.|+.+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~---~~~---~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW---EDG---RSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee---ccC---ceEEecCCceEEEEEecccCCCcccccCCcCeeEEEE
Confidence 5789999999999998888775 88865332 111 12333345678888865532 235789999
Q ss_pred ecCC---HHHHHHHHHHhcCCEEEeee
Q 022769 251 RVGD---LDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 251 ~v~D---~~~s~~fY~~~lG~~~~~~~ 274 (292)
.|.| ++++.+-+.. .|.++....
T Consensus 75 ~v~~~~d~~~~~~~l~~-~g~~~~~~~ 100 (128)
T cd07242 75 RAPSREAVDELYARLAK-RGAEILYAP 100 (128)
T ss_pred EcCCHHHHHHHHHHHHH-cCCeEecCC
Confidence 9976 5555555543 688888754
No 141
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.74 E-value=0.002 Score=49.12 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=29.3
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
.+++|+.+.|.|++++.+||+++|||++....
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 36899999999999999999999999998764
No 142
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=96.72 E-value=0.0018 Score=49.37 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=28.4
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.+|+|+.|.+.|++++.+||+++|||+....
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 3689999999999999999999999998754
No 143
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.71 E-value=0.0018 Score=49.81 Aligned_cols=30 Identities=40% Similarity=0.840 Sum_probs=28.3
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+++|+.|.|.|++++.+||+++|||++...
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEc
Confidence 589999999999999999999999999875
No 144
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.71 E-value=0.043 Score=44.55 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=55.7
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEEC-CCCCEEEEEEcCC------CCCCceeeeeecCC
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIED-PDGYKFELLERGP------TPEPLCQVMLRVGD 254 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~D-PdG~~iel~e~~~------~~~~l~hv~l~v~D 254 (292)
|++|+.+.|+|+++..+.+.+ .|.++.... . ....++..+ .++..+++.+... ....+.|+++.+.|
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~---~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d 75 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE---G--DRVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPD 75 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee---C--CEEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCC
Confidence 688999999999999998866 588875321 1 122222222 3578899987532 12468899999999
Q ss_pred ---HHHHHHHHHHhcCCEEEe
Q 022769 255 ---LDRAINFYKKAFGMELLR 272 (292)
Q Consensus 255 ---~~~s~~fY~~~lG~~~~~ 272 (292)
+++..+...+ .|+++..
T Consensus 76 ~~dvd~~~~~L~~-~Gv~~~~ 95 (157)
T cd08347 76 DEELEAWKERLEA-LGLPVSG 95 (157)
T ss_pred HHHHHHHHHHHHH-CCCCccc
Confidence 5555555543 5876543
No 145
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.70 E-value=0.0019 Score=49.87 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=27.4
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEe
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLR 272 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~ 272 (292)
++.|+.|.|.|+++|.+||+++|||++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 57999999999999999999999999876
No 146
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=96.69 E-value=0.0017 Score=49.68 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=28.2
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+++|+.|.|.|++++.+||+++|||++.+.
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 689999999999999999999999999864
No 147
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=96.65 E-value=0.0024 Score=50.04 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=27.7
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+++|+.|.|+|++++.+||+++|||++..+
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 689999999999999999999999988654
No 148
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=96.64 E-value=0.0025 Score=50.96 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=28.5
Q ss_pred CCceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 243 ~~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.+++|+.|.|.|++++.+||+++|||++.+.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEe
Confidence 4789999999999999999999999998754
No 149
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.55 E-value=0.15 Score=39.22 Aligned_cols=96 Identities=19% Similarity=0.330 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHhcCCEE-EEEeeCC------CCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC--
Q 022769 123 GDLDKTIKFYTECLGMKL-LRKRDIP------EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (292)
Q Consensus 123 ~Dle~a~~FY~~vLG~~~-~~~~~~~------~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D-- 193 (292)
.+.++|.+||+++||-.. ......+ .+....+.+..++ ..+...... +....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 689999999999999533 3322222 2234445555443 122222222 22223344 357888887
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 194 -l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
+++++++|.+.|- ... ....++|.-|+.|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 5667778887774 223 5678999999999875
No 150
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.51 E-value=0.0029 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=25.1
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
|+.|.|+|++++++||+++|||++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 899999999999999999999998653
No 151
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=96.49 E-value=0.0033 Score=49.78 Aligned_cols=30 Identities=33% Similarity=0.707 Sum_probs=27.9
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
++.|+.|.|+|++++.+||+++|||++..+
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEee
Confidence 689999999999999999999999998754
No 152
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=96.47 E-value=0.0029 Score=49.64 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=26.7
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
|+||.|.|+|++++.+||+++|||++...
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEecc
Confidence 58999999999999999999999998754
No 153
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=96.45 E-value=0.088 Score=38.29 Aligned_cols=84 Identities=26% Similarity=0.360 Sum_probs=63.6
Q ss_pred EEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC-----CCCceeeeeecCCHHHHH
Q 022769 186 HFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----PEPLCQVMLRVGDLDRAI 259 (292)
Q Consensus 186 hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~-----~~~l~hv~l~v~D~~~s~ 259 (292)
|+.+.|.|+++..+.+.+ .|.+....... +.....++.++ +..++|....+. ...+.|+.+.+.|+++..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 76 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN---GGAEFAVLGLG-GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAY 76 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc---CCEEEEEEecC-CceEEEecCCCCCCcccCCCeeEEEEECCCHHHHH
Confidence 789999999999999987 89887544221 22344556655 789999986653 357889999999999888
Q ss_pred HHHHHhcCCEEEeee
Q 022769 260 NFYKKAFGMELLRKR 274 (292)
Q Consensus 260 ~fY~~~lG~~~~~~~ 274 (292)
+-..+ .|..+....
T Consensus 77 ~~l~~-~g~~~~~~~ 90 (112)
T cd06587 77 ERLKA-AGVEVLGEP 90 (112)
T ss_pred HHHHH-cCCcccCCC
Confidence 88865 788887654
No 154
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.42 E-value=0.0042 Score=47.57 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=26.3
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+.|++|.|+|++++.+||+++|||++...
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFL 29 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEee
Confidence 46899999999999999999999998653
No 155
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.41 E-value=0.0038 Score=47.29 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=26.5
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+|+|+.|.|.|++++.+||+ .|||++..+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEee
Confidence 68999999999999999997 799999764
No 156
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.41 E-value=0.008 Score=45.73 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=26.6
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+.++.|.|.|++++.+||+++|||++...
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec
Confidence 46899999999999999999999999874
No 157
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=96.37 E-value=0.0077 Score=46.11 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=26.3
Q ss_pred eeecCCHHHHHHHHHHhcCCEEEeeecCCCCc
Q 022769 249 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYK 280 (292)
Q Consensus 249 ~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~ 280 (292)
.|.|.|++++++||+++|||++......++..
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~ 35 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGG 35 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCc
Confidence 57889999999999999999998765444433
No 158
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=96.16 E-value=0.0052 Score=46.21 Aligned_cols=28 Identities=36% Similarity=0.710 Sum_probs=25.6
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
||.|.|+|++++.+||+++|||++....
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeecc
Confidence 7899999999999999999999987653
No 159
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.09 E-value=0.0071 Score=46.24 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=26.5
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEe
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLR 272 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~ 272 (292)
++.++.|.|.|++++.+||+++|||++..
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEee
Confidence 46789999999999999999999999875
No 160
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.84 E-value=0.02 Score=43.41 Aligned_cols=33 Identities=45% Similarity=0.608 Sum_probs=26.4
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEeeecCCCCc
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK 280 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~ 280 (292)
..|.|.|++++.+||+++||+++......++..
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~ 37 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGR 37 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCC
Confidence 357889999999999999999998765434433
No 161
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.76 E-value=0.011 Score=45.16 Aligned_cols=28 Identities=43% Similarity=0.710 Sum_probs=25.7
Q ss_pred eeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 246 CQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 246 ~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
.|+.|.|+|++++.+||+++||++....
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecc
Confidence 5899999999999999999999998764
No 162
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=95.69 E-value=0.01 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=24.1
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEe
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLR 272 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~ 272 (292)
++|+.|.|.|+++|++||+ .|||++..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~ 27 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-RLGFDFPE 27 (122)
T ss_pred CceEEEEeccHHHHHHHHH-HhCceecC
Confidence 5799999999999999997 59999864
No 163
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=95.48 E-value=0.18 Score=40.50 Aligned_cols=86 Identities=23% Similarity=0.206 Sum_probs=54.1
Q ss_pred eEEEEEeeCCHHHHHHHHH-HcCCeeecCCeecC-CCCeEEEEEECCCCC-E-----EEEEEcCCCCCCceeeeeecCCH
Q 022769 184 FGHFGIAVEDVAKTVDLVK-AKGGKVTREPGPVK-GGNTVIAFIEDPDGY-K-----FELLERGPTPEPLCQVMLRVGDL 255 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~-~~G~~i~~~p~~~~-~g~~~~~y~~DPdG~-~-----iel~e~~~~~~~l~hv~l~v~D~ 255 (292)
+.|+++.|+|+++..+... ..|+++.... ..+ .+.....++.-.+|. . +.+.. ....++.|+++.|.|+
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~g~~Hiaf~v~di 78 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDVI-YLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ--GPESGVHHAAFEVHDF 78 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEeeE-ecCCCCCcEEEEEecCCCCCcccchHHHHhc--CCCCceeEEEEEcCCH
Confidence 6799999999999988775 5788765321 111 112233445533332 1 22221 2246799999999999
Q ss_pred HHHHHHHHH--hcCCEEEe
Q 022769 256 DRAINFYKK--AFGMELLR 272 (292)
Q Consensus 256 ~~s~~fY~~--~lG~~~~~ 272 (292)
++..+.+.. ..|+++..
T Consensus 79 e~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 79 DAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred HHHHHHHHHHHHCCCcEee
Confidence 999844433 57888764
No 164
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=95.26 E-value=0.26 Score=40.21 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=53.6
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEEC-CCCCEEEEEEcC-CCCCCceeeeeecCCHHHHH
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIED-PDGYKFELLERG-PTPEPLCQVMLRVGDLDRAI 259 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~D-PdG~~iel~e~~-~~~~~l~hv~l~v~D~~~s~ 259 (292)
+++|+.+.|+|+++..+.+.+ .|++..... ..+.+.....++.- +....+.+.... ..+.++.|+.+.|.|.+...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~hiaf~v~~~~~l~ 84 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQI-RLDNGKEAGAWMSVSNKVHDVAYTRDPAGARGRLHHLAYALDTREDVL 84 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEEE-ecCCCceEEEEEeCCCCceeEEEecCCCCCCCCceEEEEECCCHHHHH
Confidence 788999999999999998864 788764221 11112222234443 333445544322 22457899999999877655
Q ss_pred HHHHHh--cCCEEE
Q 022769 260 NFYKKA--FGMELL 271 (292)
Q Consensus 260 ~fY~~~--lG~~~~ 271 (292)
+++.++ .|.++.
T Consensus 85 ~~~~~l~~~Gv~i~ 98 (166)
T cd09014 85 RAADIFLENGIFIE 98 (166)
T ss_pred HHHHHHHHcCCccc
Confidence 554433 666653
No 165
>PF15067 FAM124: FAM124 family
Probab=94.95 E-value=0.22 Score=42.62 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=62.4
Q ss_pred ccceEEEEEEcC--CHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEec-CCCCCCcCCCceEEEE
Q 022769 112 KRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN-YGVDKYDIGTGFGHFG 188 (292)
Q Consensus 112 i~~i~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~-~~~~~~~~g~g~~hia 188 (292)
...+--++|.|+ |.+.+++||+-+|+-+...+.. ++ ..|.-+...+-.+.+.+..- .+..+.. .--.-+.
T Consensus 126 G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~F-C~F~lys~~~~~iQlsLK~lp~~~~p~p--~esavLq 198 (236)
T PF15067_consen 126 GKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DF-CFFTLYSQPGLDIQLSLKQLPPGMSPEP--TESAVLQ 198 (236)
T ss_pred cccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----Cc-EEEEEecCCCeEEEEEeccCCCCCCccc--ccceEEE
Confidence 346677889999 9999999999999988765532 12 23333333332333333332 1211111 1223478
Q ss_pred EeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEE
Q 022769 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (292)
Q Consensus 189 ~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel 235 (292)
|.|.|+.++...|-.--.+++ ..+ ....|||||.|-+
T Consensus 199 F~V~~igqLvpLLPnpc~PIS---------~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSPIS---------ETR-WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCCCccccc---------CCc-ceeeCCCCCEecc
Confidence 999999887655433322221 111 2468999999854
No 166
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=94.87 E-value=0.036 Score=41.25 Aligned_cols=26 Identities=31% Similarity=0.730 Sum_probs=23.7
Q ss_pred eeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 249 MLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 249 ~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
.|.|+|++++.+||+++|||++....
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEc
Confidence 57899999999999999999998764
No 167
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.85 E-value=0.024 Score=42.89 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=24.0
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
|.|.|.|++++.+||+++|||++...
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc
Confidence 67899999999999999999999765
No 168
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.67 E-value=0.039 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=24.2
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+..|.|.|++++.+||+++|||++...
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEec
Confidence 467899999999999999999998864
No 169
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=94.61 E-value=0.037 Score=40.99 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.4
Q ss_pred eecCCHHHHHHHHHHhcCCEEEee
Q 022769 250 LRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 250 l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
|.|+|++++++||+++|||++...
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEE
T ss_pred CccCCHHHHHHHHHHhcCCEEEEe
Confidence 579999999999999999999984
No 170
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.58 E-value=0.028 Score=42.34 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.5
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+.|.|.|++++++||+++|||++...
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVEL 27 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCC
Confidence 57899999999999999999998763
No 171
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.57 E-value=0.47 Score=35.97 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=54.1
Q ss_pred eEEEEEeeCCHHHHHHHHHH----cCCeeecCCeecCCCCeEEEEEECC-CCCEEEEEEcCC----CCCCceeeeeecCC
Q 022769 184 FGHFGIAVEDVAKTVDLVKA----KGGKVTREPGPVKGGNTVIAFIEDP-DGYKFELLERGP----TPEPLCQVMLRVGD 254 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~~----~G~~i~~~p~~~~~g~~~~~y~~DP-dG~~iel~e~~~----~~~~l~hv~l~v~D 254 (292)
+.|+.+.|+|++++.+-.++ .|.+..... . + .. +.+..+ .+..+.+..... ......|+.+.+.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~-~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~ 74 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---G-P-GA-VGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPS 74 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---C-C-ce-eEeccCCCCceEEEeccccCCCCCCCCceEEEEECCC
Confidence 46999999999999888876 488764332 1 1 12 334444 357777776532 23356799999998
Q ss_pred HHHHHHHHHH--hcCCEEEe
Q 022769 255 LDRAINFYKK--AFGMELLR 272 (292)
Q Consensus 255 ~~~s~~fY~~--~lG~~~~~ 272 (292)
.+...+++.+ ..|.++..
T Consensus 75 ~~~v~~~~~~~~~~g~~~~~ 94 (123)
T cd07262 75 REAVDAFHAAALAAGGTDEG 94 (123)
T ss_pred HHHHHHHHHHHHHcCCccCC
Confidence 7766666654 35665543
No 172
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.51 E-value=0.15 Score=42.02 Aligned_cols=102 Identities=27% Similarity=0.306 Sum_probs=56.3
Q ss_pred eEEEEEeeCCHHHHHHHH-HHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC-----------------CCCc
Q 022769 184 FGHFGIAVEDVAKTVDLV-KAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------------PEPL 245 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L-~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~-----------------~~~l 245 (292)
+.|+.+.|+|++++.+++ ++.|+++... +.++.++.....+.=++| .|||+...+. ..++
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~g-g~h~~~GT~N~li~f~~~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~ 78 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPG-GEHPGWGTANALIPFGDG-YLELIAIDPEAPAPDRGRWFGLDRLAGGEGL 78 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEE-EE-TTT-EEEEEEE-SSS-EEEEEEES-HHHSTGGGT-TTTHHHHT--EE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCC-CcCCCCccEEEEEeeCCc-eEEEEEeCCcccccccccceechhhcCCCCe
Confidence 469999999999999999 8889998755 556653333222333667 9999975421 2356
Q ss_pred eeeeeecCCHHHHHHHHHHhcCCEEEeee--cCCCCcEEEEEcCC
Q 022769 246 CQVMLRVGDLDRAINFYKKAFGMELLRKR--DNPDYKVNSYLLPP 288 (292)
Q Consensus 246 ~hv~l~v~D~~~s~~fY~~~lG~~~~~~~--~~~~~~~~~~~~~~ 288 (292)
..+++.+.|+++..+-.. ..|++...+. +....+|.+.+...
T Consensus 79 ~~~~l~t~d~~~~~~~l~-~~G~~~~~r~~~dG~~~~w~~~~~~~ 122 (175)
T PF13468_consen 79 YGWALRTDDIEAVAARLR-AAGLDAGSRVRPDGGDLRWRLAFPED 122 (175)
T ss_dssp EEEEEE-S-HHHHHHHHH-TTT-EEEEEEEEEE-EEEEEEEEEE-
T ss_pred EEEEEecCCHHHHHHHHH-hcCCCCCCcCcCCCCcceEEEEEeCC
Confidence 779999999999999997 4897633322 22234566666544
No 173
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.24 E-value=0.11 Score=38.65 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=40.3
Q ss_pred ceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCceEEEEEeeC
Q 022769 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVE 192 (292)
Q Consensus 114 ~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~g~g~~hia~~V~ 192 (292)
.+..+.|.|+| +++.+||+++||-++. ....+... +++...- ....-++.-+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea------------~G~DL~~~~~~twDLe~Lkf~V~ 62 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEA------------QGPDLTIENNETWDLEMLKFQVP 62 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---------------CCGSS-TTSBSSEEEEEEEES
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeec------------cCCccccCCCcEEeeEEEEEEec
Confidence 35678899999 8899999998862220 00111111 1101000 001126777889998
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEE
Q 022769 193 ---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 233 (292)
Q Consensus 193 ---Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~i 233 (292)
|+.++.+++.++++=+ +...+++.+.||.|+.+
T Consensus 63 ~~~Dl~~L~~~le~~~~fi--------dKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 63 KDFDLAALKSHLEEQEFFI--------DKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp -S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EE
T ss_pred CcccHHHHHHHhcccceEe--------cCCceEEEEECCcceEE
Confidence 5888888888855433 12445677889998765
No 174
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.23 E-value=1.3 Score=33.60 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=57.1
Q ss_pred EEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC------------CCCCCceeeeeec
Q 022769 185 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG------------PTPEPLCQVMLRV 252 (292)
Q Consensus 185 ~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~------------~~~~~l~hv~l~v 252 (292)
+++.+.|.|+++..+-.++.|.+.... ...... ..+.-.++..+.+.+.. +.+....|+.+.+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~---~~~~~~--~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQ---FSDEKA--ACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccc---cCCCCe--EEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 578999999999999888888876421 111111 22222345677776431 1123456889999
Q ss_pred CCHHHHHHHHHHh--cCCEEEeeecCCCCcEEEEEc
Q 022769 253 GDLDRAINFYKKA--FGMELLRKRDNPDYKVNSYLL 286 (292)
Q Consensus 253 ~D~~~s~~fY~~~--lG~~~~~~~~~~~~~~~~~~~ 286 (292)
.+.++..++|+++ .|.++..........|..+|.
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~ 112 (124)
T cd09012 77 DSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFA 112 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEE
Confidence 9777666666654 677766532222333444443
No 175
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=93.98 E-value=0.012 Score=47.20 Aligned_cols=46 Identities=37% Similarity=0.515 Sum_probs=40.9
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEEEeeecCCCCcEEEEEcCCC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKVNSYLLPPN 289 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
.+.|.++++.|+.+|..||++++||.+...+++++..|...|+++.
T Consensus 22 ~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~ 67 (170)
T KOG2944|consen 22 LLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAE 67 (170)
T ss_pred hhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhccc
Confidence 5788999999999999999999999999988888888888888874
No 176
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=93.82 E-value=0.12 Score=39.39 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.9
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEeee
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
..|.|.|++++++||++ |||++....
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~ 31 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQ 31 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecC
Confidence 46889999999999999 999998653
No 177
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=93.77 E-value=1.3 Score=35.75 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=51.0
Q ss_pred ceEEEEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCCC-CEEEEEEcCCCCCCceeeeeecCCHHHHHH
Q 022769 183 GFGHFGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPDG-YKFELLERGPTPEPLCQVMLRVGDLDRAIN 260 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPdG-~~iel~e~~~~~~~l~hv~l~v~D~~~s~~ 260 (292)
+++|+++.|+|+++..+-..+ .|.++..... .+.+.....++...++ +.+.+.. .....+.|+.+.+.|.+...+
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~-~~~~~~~~~~l~~~~~~~~i~l~~--~~~~~~~Hiaf~v~~~~~v~~ 79 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSEYTE-DDDGTTWAAWLHRKGGVHDTALTG--GNGPRLHHVAFWVPEPHNIIR 79 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEEEec-cCCCcEEEEEEecCCCcceEEEec--CCCCceeEEEEEcCCHHHHHH
Confidence 689999999999999988876 7887642111 1122223345544333 3344432 222368999999987555544
Q ss_pred HHHH--hcCCE
Q 022769 261 FYKK--AFGME 269 (292)
Q Consensus 261 fY~~--~lG~~ 269 (292)
.+.. ..|.+
T Consensus 80 ~~~~L~~~G~~ 90 (161)
T cd07256 80 TCDLLAAAGYS 90 (161)
T ss_pred HHHHHHHcCCC
Confidence 4433 35665
No 178
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=93.18 E-value=0.098 Score=39.70 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=26.6
Q ss_pred ceeeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+-|+.+.|+|++++.+||.++||.+.-+.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRs 33 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRS 33 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccc
Confidence 56899999999999999999999998765
No 179
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=92.95 E-value=2.8 Score=30.98 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=55.1
Q ss_pred EEEeeCCHHHHHHHHHH-cCCeeecCCeecCCCCeEEEEEECCC--CCEEEEEEcCCCCCCceeeeeecCCHHHHHHHHH
Q 022769 187 FGIAVEDVAKTVDLVKA-KGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLERGPTPEPLCQVMLRVGDLDRAINFYK 263 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~-~G~~i~~~p~~~~~g~~~~~y~~DPd--G~~iel~e~~~~~~~l~hv~l~v~D~~~s~~fY~ 263 (292)
-.+.|+|+++..+...+ .|.+.... .+ ...++..++ +..+.+...........|+.+.|.|++++.+.+.
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~l~ 76 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD-----HG--WIATFASPQNMTVQVSLATEGGTATVVPDLSIEVDDVDAALARAV 76 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc-----CC--ceEEEeecCCCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 36778999999998876 89886422 12 223344433 4556666544334456799999999999999886
Q ss_pred HhcCCEEEeee
Q 022769 264 KAFGMELLRKR 274 (292)
Q Consensus 264 ~~lG~~~~~~~ 274 (292)
+ .|.++....
T Consensus 77 ~-~G~~~~~~~ 86 (112)
T cd07238 77 A-AGFAIVYGP 86 (112)
T ss_pred h-cCCeEecCC
Confidence 4 899887643
No 180
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.22 E-value=0.12 Score=39.07 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.9
Q ss_pred eeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 248 VMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 248 v~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
..|.|+|++++++||++ |||++...
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~ 29 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWE 29 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEec
Confidence 35789999999999987 99999875
No 181
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.73 E-value=0.85 Score=36.11 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.2
Q ss_pred eecC-CHHHHHHHHHHhcCCEEEeeecCCC
Q 022769 250 LRVG-DLDRAINFYKKAFGMELLRKRDNPD 278 (292)
Q Consensus 250 l~v~-D~~~s~~fY~~~lG~~~~~~~~~~~ 278 (292)
|... |-+++++||+++||.++..+....+
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d 35 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGD 35 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCc
Confidence 5566 9999999999999999998876666
No 182
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=87.19 E-value=1.1 Score=34.65 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=22.7
Q ss_pred eeec-CCHHHHHHHHHHhcCCEEEeee
Q 022769 249 MLRV-GDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 249 ~l~v-~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
.|.+ .|.+++++||+++||+++....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 3556 8999999999999999999765
No 183
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=85.14 E-value=0.91 Score=34.89 Aligned_cols=27 Identities=41% Similarity=0.732 Sum_probs=22.5
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEee
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
+-+++|.|-+..++||++.|||++..+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~E 29 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSE 29 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEE
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeec
Confidence 347899999999999999999999975
No 184
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=84.42 E-value=1 Score=34.89 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=24.4
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEeeecCC
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNP 277 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~~~~~~ 277 (292)
.|.|.|.|+++|.+||+ .|||+.-....++
T Consensus 6 FvNLPVkDL~~S~~Fy~-alGfk~Npq~sde 35 (133)
T COG3607 6 FVNLPVKDLEASKAFYT-ALGFKFNPQFSDE 35 (133)
T ss_pred EEecchhhHHHHHHHHH-HhCcccCCCcccc
Confidence 57899999999999997 5999987654333
No 185
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=83.95 E-value=9.6 Score=31.76 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=38.4
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEE-E----eeCCCCceEEEEEEecCCCCCCcCCCceEEE
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAF-L----GYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 187 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~-l----~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hi 187 (292)
..++|++++|++.+.+.+|-+..+..-..-....-.|+....+ + ..++ ..--.+||..+.. ..+ +-.|+-||
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~-~~I~~vELP~P~~-K~Y-p~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGG-WSIDCVELPYPKD-KRY-PQEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETT-EEEEEEEEE---S-S---SS-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCC-eeEEEEEeCCCCC-CCC-CCCCceEE
Confidence 4689999999999999999998876543332211122211111 1 1111 1112345554332 222 34599999
Q ss_pred EEeeCC
Q 022769 188 GIAVED 193 (292)
Q Consensus 188 a~~V~D 193 (292)
.|.++.
T Consensus 110 E~Vip~ 115 (185)
T PF06185_consen 110 EFVIPS 115 (185)
T ss_dssp EEE--S
T ss_pred EEEecC
Confidence 999984
No 186
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=83.59 E-value=1 Score=41.24 Aligned_cols=27 Identities=48% Similarity=0.733 Sum_probs=24.5
Q ss_pred CceeeeeecCCHHHHHHHHHHhcCCEE
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFGMEL 270 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG~~~ 270 (292)
.--||+|.|+|+++|.+||+++||+..
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 556899999999999999999999874
No 187
>PRK11700 hypothetical protein; Provisional
Probab=79.92 E-value=28 Score=29.03 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=42.5
Q ss_pred cceEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCC--CceE---EEEEEecCCCCCCcCCCceEEE
Q 022769 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE--DSHF---VVELTYNYGVDKYDIGTGFGHF 187 (292)
Q Consensus 113 ~~i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~~~~---~l~l~~~~~~~~~~~g~g~~hi 187 (292)
..++|+.|+|.+.+.|.+|-+..+..-..-....-.|+. .+-+.+... -.+. .+|+..+.. ..+ +-.|+-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRP-I~l~~L~qPl~~~~w~I~cvELP~P~~-k~Y-p~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRP-ICLFELDQPLQVGHWSIDCVELPYPGE-KRY-PHEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCee-EEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEE
Confidence 357899999999999999988765432221111111221 222222111 1112 345544322 223 34599999
Q ss_pred EEeeCC
Q 022769 188 GIAVED 193 (292)
Q Consensus 188 a~~V~D 193 (292)
.+.++.
T Consensus 115 ElVlp~ 120 (187)
T PRK11700 115 ELVLPG 120 (187)
T ss_pred EEEecC
Confidence 999983
No 188
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=73.29 E-value=16 Score=25.85 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcC
Q 022769 193 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (292)
Q Consensus 193 Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~ 239 (292)
..+++.+.+.+.|+.+.. .....++.+-++..|.+|..+|+.=++
T Consensus 30 ~~~~~~~~l~~~G~~v~~--ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE--VEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEE--EEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 688899999999996642 233234457788899999999998553
No 189
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=72.94 E-value=32 Score=27.56 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=41.5
Q ss_pred eEEEEEEcCCHHHHHHHHHHhcCCEEEEEeeCCCCceEEEEEeeCCC--CceE---EEEEEecCCCCCCcCCCceEEEEE
Q 022769 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE--DSHF---VVELTYNYGVDKYDIGTGFGHFGI 189 (292)
Q Consensus 115 i~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~~~~---~l~l~~~~~~~~~~~g~g~~hia~ 189 (292)
++|+.|+|.+.+.+.+|-+..+..-..-....-.|+. ..-+.+... -.+. .++|..+.. ..+ +-.|+-||.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRP-I~l~~L~qPl~~~~~~I~cvELP~P~~-k~Y-p~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRP-IALIKLEKPLQFAGWSISIVELPFPKD-KKY-PQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCee-EEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 6899999999999999998866432221111111221 222222111 1112 345544322 223 3459999999
Q ss_pred eeCC
Q 022769 190 AVED 193 (292)
Q Consensus 190 ~V~D 193 (292)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 9973
No 190
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=63.54 E-value=61 Score=25.71 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=54.3
Q ss_pred ceEEEEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEEEcCCC---------CCCceeeeeecC
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------PEPLCQVMLRVG 253 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~e~~~~---------~~~l~hv~l~v~ 253 (292)
|+.+|.|.+++-+++...+.+.|++... .+.... +++.--.++.|-|-+.+.. ...++-+.|.|.
T Consensus 9 G~dFvEFa~~~~~~l~~~~~~lGF~~~a---~hrsk~---v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~ 82 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLFTALGFQPVA---RHRSKD---VTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVD 82 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHHCCCCEEEEC---CECCCS---EEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES
T ss_pred CeEEEEEecCCHHHHHHHHHHhCcceEE---ecCCcc---eEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeC
Confidence 8899999999988888889999988753 232211 2233333444444333221 246889999999
Q ss_pred CHHHHHHHHHHhcCCEEEeee
Q 022769 254 DLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 254 D~~~s~~fY~~~lG~~~~~~~ 274 (292)
|.+++.+--. .+|-+.....
T Consensus 83 Da~~A~~rA~-~~GA~~~~~~ 102 (139)
T PF14696_consen 83 DAAAAYERAV-ALGAEPVQEP 102 (139)
T ss_dssp -HHHHHHHHH-HTT--EEEEE
T ss_pred CHHHHHHHHH-HcCCcCcccC
Confidence 9999988775 4888877654
No 191
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.34 E-value=95 Score=24.84 Aligned_cols=98 Identities=15% Similarity=0.334 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHhcCCEEEE---Ee--eCC---CCceEEEEEeeCCCCceEEEEEEecCCCCCCcCCCceEEEEEeeCC-
Q 022769 123 GDLDKTIKFYTECLGMKLLR---KR--DIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED- 193 (292)
Q Consensus 123 ~Dle~a~~FY~~vLG~~~~~---~~--~~~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~g~~hia~~V~D- 193 (292)
.+.++|.+||.++|-=.... +. +.+ .+....+.+.+++. -.+.+.. .+...+....++ .+-+.++|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~---~f~~ld~-g~~~~f~fneA~-S~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQ---SFMALDG-GPNTSFKFNEAF-SFQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCe---EEEEEcC-CCCcCCCcCccE-EEEEEcCCH
Confidence 78999999999998533222 11 111 23444444544432 1222222 122112222222 23444555
Q ss_pred --HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCCCCEEEEE
Q 022769 194 --VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (292)
Q Consensus 194 --l~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPdG~~iel~ 236 (292)
+|++...|...|... ....+++|-.|+-|.|+
T Consensus 89 ~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 89 EEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIV 122 (151)
T ss_pred HHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEc
Confidence 777888888888632 12358999999999998
No 192
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=57.67 E-value=24 Score=31.85 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCceEEEEEee------CCHHHHHHHHHHcCCeee
Q 022769 180 IGTGFGHFGIAV------EDVAKTVDLVKAKGGKVT 209 (292)
Q Consensus 180 ~g~g~~hia~~V------~Dl~~~~~~L~~~G~~i~ 209 (292)
.|..++|+++.| .|++++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 456889999999 999999999999999886
No 193
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.02 E-value=45 Score=23.18 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=30.6
Q ss_pred EEEeeCC----HHHHHHHHHHcCCeeecCCeecCCC-CeEEEEEECCCCCEE
Q 022769 187 FGIAVED----VAKTVDLVKAKGGKVTREPGPVKGG-NTVIAFIEDPDGYKF 233 (292)
Q Consensus 187 ia~~V~D----l~~~~~~L~~~G~~i~~~p~~~~~g-~~~~~y~~DPdG~~i 233 (292)
+.+...| +-++.+.+.+.|+.+........++ ..-.||+.|.+|..+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 3444555 6677888999999875442222221 234789999999876
No 194
>PRK10148 hypothetical protein; Provisional
Probab=55.58 E-value=16 Score=29.11 Aligned_cols=26 Identities=38% Similarity=0.660 Sum_probs=20.9
Q ss_pred eeec-CCHHHHHHHHHHhcCCEEEeee
Q 022769 249 MLRV-GDLDRAINFYKKAFGMELLRKR 274 (292)
Q Consensus 249 ~l~v-~D~~~s~~fY~~~lG~~~~~~~ 274 (292)
-|.. .|-+++++||+++||.++....
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~ 32 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKI 32 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEE
Confidence 3455 4899999999999999887543
No 195
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=54.92 E-value=4.6 Score=30.18 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=9.6
Q ss_pred ceeeeeecCCHHHHHHHHHHhcC
Q 022769 245 LCQVMLRVGDLDRAINFYKKAFG 267 (292)
Q Consensus 245 l~hv~l~v~D~~~s~~fY~~~lG 267 (292)
+..+.|+|.| +++..||.++||
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp E-EEEEEE-T--T---S--H---
T ss_pred EEEEEEeCCC-hhHHHHHHhccc
Confidence 4568999999 889999999886
No 196
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.60 E-value=55 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=21.0
Q ss_pred eEEEEEee--CCHHHHHHHHHHcCCeeecC
Q 022769 184 FGHFGIAV--EDVAKTVDLVKAKGGKVTRE 211 (292)
Q Consensus 184 ~~hia~~V--~Dl~~~~~~L~~~G~~i~~~ 211 (292)
...+.|.+ .|.+.+.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 33455555 47889999999999998754
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.51 E-value=48 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.2
Q ss_pred ceEEEEEeeCCHHHHHHHHHHcCCee
Q 022769 183 GFGHFGIAVEDVAKTVDLVKAKGGKV 208 (292)
Q Consensus 183 g~~hia~~V~Dl~~~~~~L~~~G~~i 208 (292)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45568899999999999999999875
No 198
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.09 E-value=1.1e+02 Score=21.39 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=30.3
Q ss_pred EEEeeCC----HHHHHHHHHHcCCeeecCCeecCCC-CeEEEEEECCCCCEE
Q 022769 187 FGIAVED----VAKTVDLVKAKGGKVTREPGPVKGG-NTVIAFIEDPDGYKF 233 (292)
Q Consensus 187 ia~~V~D----l~~~~~~L~~~G~~i~~~p~~~~~g-~~~~~y~~DPdG~~i 233 (292)
+.+.+.| +-++...|.+.|+.+........++ -.-.||++|.+|..+
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 3455556 6677888899998875432221111 234689999999876
No 199
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=39.00 E-value=2.1e+02 Score=23.27 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=46.3
Q ss_pred EEEeeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEECCC----------------CCEEEEEEcCCCCC-Cc---e
Q 022769 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD----------------GYKFELLERGPTPE-PL---C 246 (292)
Q Consensus 187 ia~~V~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~y~~DPd----------------G~~iel~e~~~~~~-~l---~ 246 (292)
+-+.+.|++.+.++|++.|+.....-. ..-.|+..|+ |. ..+.-.+|... .+ .
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~~l~~~~~~LRiR~~~~~-~~lT~Kgp~~~~~~~~~~ 78 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCRDFASTDEALRIRKLTGE-KFVTYKGPKIDNESKTRK 78 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCcchhhCCcEEEEEEcCCc-EEEEEeCCccCCcceEEE
Confidence 446678999999999999976432211 1113444443 22 11111122211 11 2
Q ss_pred eeeeecCCHHHHHHHHHHhcCCEEEe
Q 022769 247 QVMLRVGDLDRAINFYKKAFGMELLR 272 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~~~~~ 272 (292)
.+...+.|.+...+.+. .||++...
T Consensus 79 E~e~~v~d~~~~~~iL~-~LG~~~~~ 103 (174)
T TIGR00318 79 EIEFKIEDIENALQILK-KLGFKKVY 103 (174)
T ss_pred EEEEEECCHHHHHHHHH-HCCCeEEE
Confidence 36678899999999997 79999744
No 200
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=38.10 E-value=53 Score=24.97 Aligned_cols=16 Identities=44% Similarity=0.962 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHhcCC
Q 022769 253 GDLDRAINFYKKAFGM 268 (292)
Q Consensus 253 ~D~~~s~~fY~~~lG~ 268 (292)
.+-++|.+||.++||-
T Consensus 11 g~a~eA~~fY~~vf~~ 26 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGG 26 (116)
T ss_dssp S-HHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHcCC
Confidence 7899999999999994
No 201
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=35.67 E-value=64 Score=24.89 Aligned_cols=84 Identities=25% Similarity=0.404 Sum_probs=46.5
Q ss_pred eEEEEEeeCCHHHHHHHHHHcCCeeecC------CeecCCCCeEEE-EEECCCCC---EEEEEEcCCCCCCceeeeeecC
Q 022769 184 FGHFGIAVEDVAKTVDLVKAKGGKVTRE------PGPVKGGNTVIA-FIEDPDGY---KFELLERGPTPEPLCQVMLRVG 253 (292)
Q Consensus 184 ~~hia~~V~Dl~~~~~~L~~~G~~i~~~------p~~~~~g~~~~~-y~~DPdG~---~iel~e~~~~~~~l~hv~l~v~ 253 (292)
++-+-..|++.+.+++.|.++|+.+... -.+.|++-...+ .+.|-|=| ...|++.. .-.-+.+++.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----~KAlli~r~e 117 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----QKALLIVRVE 117 (142)
T ss_pred cceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----ceEEEEEEhh
Confidence 3346778888999999999999887422 011111110000 01121111 11122211 2233667899
Q ss_pred CHHHHHHHHHHhcCCEEEe
Q 022769 254 DLDRAINFYKKAFGMELLR 272 (292)
Q Consensus 254 D~~~s~~fY~~~lG~~~~~ 272 (292)
|++++.+-.++ .|.++..
T Consensus 118 d~d~~~~aLed-~gi~~~~ 135 (142)
T COG4747 118 DIDRAIKALED-AGIKLIG 135 (142)
T ss_pred HHHHHHHHHHH-cCCeecC
Confidence 99999999976 7777654
No 202
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=29.17 E-value=1.9e+02 Score=21.52 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEE--EEECCCCCEE--EEEEcCCCCCCceeeeeecCCHHHHHHHHH
Q 022769 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIA--FIEDPDGYKF--ELLERGPTPEPLCQVMLRVGDLDRAINFYK 263 (292)
Q Consensus 192 ~Dl~~~~~~L~~~G~~i~~~p~~~~~g~~~~~--y~~DPdG~~i--el~e~~~~~~~l~hv~l~v~D~~~s~~fY~ 263 (292)
.+.+.+.++|++.++-.... +..++ ....+ +.++..|..+ |+.-. ...+-..+.+.+.+.+-+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~-~~~~~y~s~~~~~~~~fL~El~~~--~~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDN-GQKFFYFSAKTTNGIWFLVELTID--PGSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT--EEEEEEEEEBTTS-EEEEEEEE---TT-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCc-cccEEEEEEEcCCCcEEEEEEEEc--CCCccEEEEEecCCHHHHHHHHH
Confidence 47899999999999876532 33332 23333 3446666544 33322 22346688888888866666654
No 203
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=59 Score=27.94 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHhcCCEEEEE
Q 022769 122 VGDLDKTIKFYTECLGMKLLRK 143 (292)
Q Consensus 122 V~Dle~a~~FY~~vLG~~~~~~ 143 (292)
..|..++..||.+.||+++..-
T Consensus 144 sa~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hhccHHHHHHHHHhcCceeeec
Confidence 3578889999999999998653
No 204
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=23.46 E-value=38 Score=21.27 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=18.7
Q ss_pred CceeeeeecCCHHHHHHHHHHhcC
Q 022769 244 PLCQVMLRVGDLDRAINFYKKAFG 267 (292)
Q Consensus 244 ~l~hv~l~v~D~~~s~~fY~~~lG 267 (292)
+++...+-++++++..+||+..|-
T Consensus 11 p~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 11 PVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred ccccCCCccccccchhHHHHHHHH
Confidence 455666677889999999998764
No 205
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=63 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.7
Q ss_pred ecCCHHHHHHHHHHhcCCEEEee
Q 022769 251 RVGDLDRAINFYKKAFGMELLRK 273 (292)
Q Consensus 251 ~v~D~~~s~~fY~~~lG~~~~~~ 273 (292)
...|+.+++.||.+.||+++...
T Consensus 143 dsa~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 143 DSADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hhhccHHHHHHHHHhcCceeeec
Confidence 45688999999999999998764
No 206
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.15 E-value=1.9e+02 Score=20.31 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEeeCC----HHHHHHHHHHcCCeee
Q 022769 183 GFGHFGIAVED----VAKTVDLVKAKGGKVT 209 (292)
Q Consensus 183 g~~hia~~V~D----l~~~~~~L~~~G~~i~ 209 (292)
+-..+.++++| ++.+.+.|+++|+++.
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVV 70 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeE
Confidence 33457788888 8899999999999874
No 207
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.44 E-value=30 Score=20.02 Aligned_cols=22 Identities=27% Similarity=0.750 Sum_probs=16.3
Q ss_pred eeeeecCCHHHHHHHHHHhcCC
Q 022769 247 QVMLRVGDLDRAINFYKKAFGM 268 (292)
Q Consensus 247 hv~l~v~D~~~s~~fY~~~lG~ 268 (292)
.+-....|.++++.+|+++|.+
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 3445678999999999997744
Done!