Citrus Sinensis ID: 022771

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK
ccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHccHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHcccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEccccccccccccccEEcccccccccccccccccccccEEEEEEccccccccccc
ccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccHHEcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHcccHcHHHHHHHHHHHHHHccccEEEEEEcccccccccccEccEEcccccccccccccccccccccEEEEEEccccccEEccc
mqnqekcgascefddwsnfededIMQQQSDikaeeaqkvpfvadkeplsALASEYQSGSPILLEKIKVLGEQYAAIRrtrgdgncfFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQslghadftFEDFFALFLEQLDNvlqgnefsishGELVVRSRDQSVSDYVVMFFRFVTSgeirkrseffepfilgltnaTVEQFCKSsvepmgeesdhVHITALSDALGVPIRVVYLdrsscdsggasvnhhdfiptpgdcpnatsgstettipfitllyrpghydilypk
mqnqekcgascefddwsnFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVrsrdqsvsDYVVMFFRFVtsgeirkrSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFitllyrpghydilypk
MQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK
**********************************************************SPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSV*******DHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIP************TETTIPFITLLYRPGHYDILY**
********************************************KEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPG**********ETTIPFITLLYRPGHYDILYPK
*********SCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK
****************SNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNH*DFIPTP************TTIPFITLLYRPGHYDILYPK
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MQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q8LG98306 Ubiquitin thioesterase ot yes no 0.931 0.888 0.738 1e-119
Q96FW1271 Ubiquitin thioesterase OT yes no 0.897 0.966 0.418 2e-50
B2RYG6271 Ubiquitin thioesterase OT yes no 0.897 0.966 0.418 3e-50
Q7TQI3271 Ubiquitin thioesterase OT yes no 0.897 0.966 0.418 3e-50
Q9VL00262 Ubiquitin thioesterase ot yes no 0.849 0.946 0.421 4e-49
Q9XVR6284 Ubiquitin thioesterase ot yes no 0.856 0.880 0.371 2e-41
A8XDJ2288 Ubiquitin thioesterase ot N/A no 0.859 0.871 0.372 3e-40
Q96DC9234 Ubiquitin thioesterase OT no no 0.695 0.867 0.360 1e-30
Q9CQX0234 Ubiquitin thioesterase OT no no 0.695 0.867 0.365 1e-30
>sp|Q8LG98|OTUBL_ARATH Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2 Back     alignment and function desciption
 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 234/279 (83%), Gaps = 7/279 (2%)

Query: 14  DDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQY 73
           ++W N      ++ Q   + EEA KVP+V DKEPLS+LA+EYQSGSPILLEKIK+L  QY
Sbjct: 24  EEWGNCSS---VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQY 80

Query: 74  AAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFED 133
             IRRTRGDGNCFFRSFMFSYLEHIL SQD+AEVDRIK  VE+CR+TLQ+LG+ DFTFED
Sbjct: 81  IGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFED 140

Query: 134 FFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPF 193
           FFALFLEQLD++LQG E SIS+ ELV RSRDQSVSDY+VMFFRFVT+G+IR R++FFEPF
Sbjct: 141 FFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPF 200

Query: 194 ILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHH 253
           I GL+NATV+QFCKSSVEPMGEESDH+HITALSDALGV IRVVYLDRSSCDSGG +VNHH
Sbjct: 201 ITGLSNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHH 260

Query: 254 DFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292
           DF+P             E + PFITLLYRPGHYDILYPK
Sbjct: 261 DFVPV----GITNEKDEEASAPFITLLYRPGHYDILYPK 295
Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q96FW1|OTUB1_HUMAN Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2 Back     alignment and function description
>sp|B2RYG6|OTUB1_RAT Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1 SV=1 Back     alignment and function description
>sp|Q7TQI3|OTUB1_MOUSE Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VL00|OTUBL_DROME Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster GN=CG4968 PE=2 SV=1 Back     alignment and function description
>sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans GN=otub-1 PE=1 SV=1 Back     alignment and function description
>sp|A8XDJ2|OTUBL_CAEBR Ubiquitin thioesterase otubain-like OS=Caenorhabditis briggsae GN=otub-1 PE=3 SV=1 Back     alignment and function description
>sp|Q96DC9|OTUB2_HUMAN Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2 Back     alignment and function description
>sp|Q9CQX0|OTUB2_MOUSE Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
255588857304 conserved hypothetical protein [Ricinus 1.0 0.960 0.801 1e-138
224072469293 predicted protein [Populus trichocarpa] 0.972 0.969 0.787 1e-134
356554953301 PREDICTED: ubiquitin thioesterase otubai 0.958 0.930 0.807 1e-133
363807360301 uncharacterized protein LOC100787261 [Gl 0.958 0.930 0.804 1e-132
449468900302 PREDICTED: ubiquitin thioesterase otubai 0.996 0.963 0.742 1e-129
217071820298 unknown [Medicago truncatula] gi|3884933 0.945 0.926 0.801 1e-129
296085526305 unnamed protein product [Vitis vinifera] 0.962 0.921 0.784 1e-129
156708183260 otubain-like cysteine protease [Populus 0.890 1.0 0.832 1e-127
225425262270 PREDICTED: ubiquitin thioesterase otubai 0.917 0.992 0.796 1e-124
357446307337 Ubiquitin thioesterase otubain-like prot 0.945 0.818 0.705 1e-124
>gi|255588857|ref|XP_002534741.1| conserved hypothetical protein [Ricinus communis] gi|223524648|gb|EEF27640.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/302 (80%), Positives = 262/302 (86%), Gaps = 10/302 (3%)

Query: 1   MQNQE-------KCGASCE---FDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSA 50
           MQNQE       K  A  E    +DW+NF DEDIMQ  S I++E++ KVPF+ DKEPLSA
Sbjct: 3   MQNQEEEIAEEAKMEAKSEKGAAEDWTNFGDEDIMQHHSSIRSEQSDKVPFLGDKEPLSA 62

Query: 51  LASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRI 110
           LA+EYQSGSPILLEKIKVLGEQY AIRRTRGDGNCFFRSFMFSYLEHIL SQD++EVDRI
Sbjct: 63  LAAEYQSGSPILLEKIKVLGEQYDAIRRTRGDGNCFFRSFMFSYLEHILESQDKSEVDRI 122

Query: 111 KAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDY 170
           K  VEECR+TLQSLG+ DFTFEDFFALFLEQLD+VLQGNE SISH EL+ RSRDQS+SDY
Sbjct: 123 KVNVEECRKTLQSLGYVDFTFEDFFALFLEQLDSVLQGNETSISHDELINRSRDQSISDY 182

Query: 171 VVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALG 230
           VVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKS+VEPMGEESDHVHITALSDALG
Sbjct: 183 VVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSAVEPMGEESDHVHITALSDALG 242

Query: 231 VPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
           V IRVVYLDRSSCD+GG SVNHHDFIP  GD PN+ S  + +  PFITLLYRPGHYDILY
Sbjct: 243 VAIRVVYLDRSSCDTGGVSVNHHDFIPPAGDLPNSNSDGSLSKNPFITLLYRPGHYDILY 302

Query: 291 PK 292
           PK
Sbjct: 303 PK 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224072469|ref|XP_002303747.1| predicted protein [Populus trichocarpa] gi|222841179|gb|EEE78726.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554953|ref|XP_003545805.1| PREDICTED: ubiquitin thioesterase otubain-like [Glycine max] Back     alignment and taxonomy information
>gi|363807360|ref|NP_001242120.1| uncharacterized protein LOC100787261 [Glycine max] gi|255640197|gb|ACU20389.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449468900|ref|XP_004152159.1| PREDICTED: ubiquitin thioesterase otubain-like [Cucumis sativus] gi|449523221|ref|XP_004168622.1| PREDICTED: ubiquitin thioesterase otubain-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217071820|gb|ACJ84270.1| unknown [Medicago truncatula] gi|388493334|gb|AFK34733.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|296085526|emb|CBI29258.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|156708183|gb|ABU93349.1| otubain-like cysteine protease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425262|ref|XP_002270583.1| PREDICTED: ubiquitin thioesterase otubain-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357446307|ref|XP_003593431.1| Ubiquitin thioesterase otubain-like protein [Medicago truncatula] gi|355482479|gb|AES63682.1| Ubiquitin thioesterase otubain-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2010469306 AT1G28120 [Arabidopsis thalian 0.931 0.888 0.741 7e-109
ZFIN|ZDB-GENE-040718-108267 otub1a "OTU domain, ubiquitin 0.780 0.853 0.423 7.7e-52
UNIPROTKB|J3KR44308 OTUB1 "Ubiquitin thioesterase 0.825 0.782 0.421 2e-49
UNIPROTKB|Q96FW1271 OTUB1 "Ubiquitin thioesterase 0.825 0.889 0.421 2e-49
UNIPROTKB|C5H0C6271 OTUB1 "Uncharacterized protein 0.825 0.889 0.421 2e-49
MGI|MGI:2147616271 Otub1 "OTU domain, ubiquitin a 0.825 0.889 0.421 2e-49
RGD|1311329271 Otub1 "OTU domain, ubiquitin a 0.825 0.889 0.421 2e-49
UNIPROTKB|Q3T0Y1271 OTUB1 "OTU domain, ubiquitin a 0.825 0.889 0.417 8.7e-49
ZFIN|ZDB-GENE-040718-204254 otub1b "OTU domain, ubiquitin 0.763 0.877 0.421 8.7e-49
UNIPROTKB|F1PIA2271 OTUB1 "Uncharacterized protein 0.763 0.822 0.434 1.1e-48
TAIR|locus:2010469 AT1G28120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 207/279 (74%), Positives = 235/279 (84%)

Query:    14 DDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQY 73
             ++W N      ++ Q   + EEA KVP+V DKEPLS+LA+EYQSGSPILLEKIK+L  QY
Sbjct:    24 EEWGNCSS---VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQY 80

Query:    74 AAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFED 133
               IRRTRGDGNCFFRSFMFSYLEHIL SQD+AEVDRIK  VE+CR+TLQ+LG+ DFTFED
Sbjct:    81 IGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFED 140

Query:   134 FFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPF 193
             FFALFLEQLD++LQG E SIS+ ELV RSRDQSVSDY+VMFFRFVT+G+IR R++FFEPF
Sbjct:   141 FFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPF 200

Query:   194 ILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHH 253
             I GL+NATV+QFCKSSVEPMGEESDH+HITALSDALGV IRVVYLDRSSCDSGG +VNHH
Sbjct:   201 ITGLSNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHH 260

Query:   254 DFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292
             DF+P  G          E + PFITLLYRPGHYDILYPK
Sbjct:   261 DFVPV-GI---TNEKDEEASAPFITLLYRPGHYDILYPK 295
GO:0005737 "cytoplasm" evidence=ISM
GO:0008242 "omega peptidase activity" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
ZFIN|ZDB-GENE-040718-108 otub1a "OTU domain, ubiquitin aldehyde binding 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR44 OTUB1 "Ubiquitin thioesterase OTUB1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96FW1 OTUB1 "Ubiquitin thioesterase OTUB1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C5H0C6 OTUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2147616 Otub1 "OTU domain, ubiquitin aldehyde binding 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311329 Otub1 "OTU domain, ubiquitin aldehyde binding 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0Y1 OTUB1 "OTU domain, ubiquitin aldehyde binding 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-204 otub1b "OTU domain, ubiquitin aldehyde binding 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PIA2 OTUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2RYG6OTUB1_RAT3, ., 4, ., 1, 9, ., 1, 20.41860.89720.9667yesno
Q96FW1OTUB1_HUMAN3, ., 4, ., 1, 9, ., 1, 20.41860.89720.9667yesno
Q9VL00OTUBL_DROME3, ., 4, ., 1, 9, ., 1, 20.42120.84930.9465yesno
Q7TQI3OTUB1_MOUSE3, ., 4, ., 1, 9, ., 1, 20.41860.89720.9667yesno
Q8LG98OTUBL_ARATH3, ., 4, ., 1, 9, ., 1, 20.73830.93150.8888yesno
Q9XVR6OTUBL_CAEEL3, ., 4, ., 1, 9, ., 1, 20.37180.85610.8802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.976
3rd Layer3.4.19.120.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OTU1
SubName- Full=Otubain-like cysteine protease; Flags- Fragment; (293 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
pfam10275237 pfam10275, Peptidase_C65, Peptidase C65 Otubain 1e-105
pfam02338123 pfam02338, OTU, OTU-like cysteine protease 4e-04
>gnl|CDD|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain Back     alignment and domain information 
 Score =  305 bits (784), Expect = e-105
 Identities = 127/258 (49%), Positives = 165/258 (63%), Gaps = 21/258 (8%)

Query: 34  EEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFS 93
           EE  + P V +KEPLSAL  EY    PI L+KIK L ++Y+ IRR RGDGNCF+R+F FS
Sbjct: 1   EEENQGPLVGEKEPLSALTKEYALADPIYLKKIKDLSKKYSGIRRVRGDGNCFYRAFGFS 60

Query: 94  YLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSI 153
           YLE +L  +D AE++R  A++E  +  L +LG  +FTFEDF   F+E L+ +  G     
Sbjct: 61  YLEILLRKKDPAEINRFIARIESLKEKLVALGFDEFTFEDFLDEFIELLEKLEDGGS--T 118

Query: 154 SHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPM 213
           S  EL+    D   SDY+V+FFR +TS  I++ ++ ++PFI  L   TVE+FC+  VEPM
Sbjct: 119 SREELLKAFNDPEYSDYIVIFFRLLTSAYIKENADEYQPFIDELL--TVEEFCEQEVEPM 176

Query: 214 GEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETT 273
            +ESDHV I AL++ALG+P+RV YLDRS     G   NHH+F P             E  
Sbjct: 177 AKESDHVQIIALAEALGIPVRVEYLDRSE----GNEYNHHNFPP-------------EPN 219

Query: 274 IPFITLLYRPGHYDILYP 291
            P ITLLYRPGHYDILYP
Sbjct: 220 APKITLLYRPGHYDILYP 237

This family of proteins conserved from plants to humans is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryote being a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. Length = 237
>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
KOG3991256 consensus Uncharacterized conserved protein [Funct 100.0
PF10275244 Peptidase_C65: Peptidase C65 Otubain; InterPro: IP 100.0
KOG2606302 consensus OTU (ovarian tumor)-like cysteine protea 99.29
PF02338121 OTU: OTU-like cysteine protease; InterPro: IPR0033 99.1
COG5539306 Predicted cysteine protease (OTU family) [Posttran 98.36
KOG3288307 consensus OTU-like cysteine protease [Signal trans 97.43
COG5539306 Predicted cysteine protease (OTU family) [Posttran 94.7
>KOG3991 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-78  Score=529.79  Aligned_cols=246  Identities=55%  Similarity=0.920  Sum_probs=233.8

Q ss_pred             ChHHHHHHHHHHHHHHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHH
Q 022771           20 EDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHIL   99 (292)
Q Consensus        20 ~d~~~~~q~~~i~~e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll   99 (292)
                      .|+.|++||.+|++|++++.|||+++.|++.|..||. ++++|.+||+.|.++|..+|++|||||||||||+|+|+|.|+
T Consensus        11 ~de~~~~~q~~~~~e~~~~~plvse~~~~s~l~~eY~-~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~ll   89 (256)
T KOG3991|consen   11 DDEIILQDQLKIQEEESKTNPLVSEKAPLSSLYAEYF-GDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLELLL   89 (256)
T ss_pred             cchhhhhchHHHHHHHhhcCccccccccHHHHHHHhc-CChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999998 467999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHH
Q 022771          100 ASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVT  179 (292)
Q Consensus       100 ~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllt  179 (292)
                      .  |..++.+|++.+.+++..|..+||++|+++||++.|+++|+++..+    .+.++|+..|||+..|+|||+|||++|
T Consensus        90 ~--d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~~g----~sv~~l~~~~ndq~ssdyiV~ylRLvt  163 (256)
T KOG3991|consen   90 L--DRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVEGG----TSVDELLKIFNDQSSSDYIVMYLRLVT  163 (256)
T ss_pred             h--chHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHcCC----ccHHHHHHHHhccchhHHHHHHHHHHH
Confidence            8  8899999999999999999999999999999999999999999654    578999999999999999999999999


Q ss_pred             HHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCC
Q 022771          180 SGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTP  259 (292)
Q Consensus       180 s~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~  259 (292)
                      |++||+|+|+|+|||++  ++||.+||.++||||++|+|||+|.||++||++.|+|+|+||+.++    .++||+| |+.
T Consensus       164 S~~ik~~adfy~pFI~e--~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~----~~~hH~f-pe~  236 (256)
T KOG3991|consen  164 SGFIKSNADFYQPFIDE--GMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGD----TVNHHDF-PEA  236 (256)
T ss_pred             HHHHhhChhhhhccCCC--CCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCC----CCCCCcC-ccc
Confidence            99999999999999987  5799999999999999999999999999999999999999999853    5899999 552


Q ss_pred             CCCCCCCCCCCCCCCCeEEEEecCCCccccccC
Q 022771          260 GDCPNATSGSTETTIPFITLLYRPGHYDILYPK  292 (292)
Q Consensus       260 ~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~~  292 (292)
                                   ..|.|+||||||||||||||
T Consensus       237 -------------s~P~I~LLYrpGHYdilY~~  256 (256)
T KOG3991|consen  237 -------------SAPEIYLLYRPGHYDILYKK  256 (256)
T ss_pred             -------------cCceEEEEecCCccccccCC
Confidence                         37999999999999999996

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
4ddg_A399 Crystal Structure Of Human Otub1UBCH5B~UBUB Length 1e-49
2zfy_A234 Crystal Structure Of Human Otubain 1 Length = 234 2e-47
3von_A228 Crystalstructure Of The Ubiquitin Protease Length = 5e-47
4i6l_A229 Crystal Structure Of Otub1 In Complex With Ubiquiti 6e-46
4dhz_A288 The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ 5e-44
4dhi_B284 Structure Of C. Elegans Otub1 Bound To Human Ubc13 1e-42
1tff_A234 Structure Of Otubain-2 Length = 234 5e-30
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 158/270 (58%), Gaps = 26/270 (9%)
Query: 21  DEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTR 80
           DE IM QQ  I+ E A + P V+++  LS L  EY     I  +KIK L ++Y+ IR+TR
Sbjct: 155 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTR 214
Query: 81  GDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLE 140
            DGN F+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++
Sbjct: 215 PDGNSFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 272
Query: 141 QLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNA 200
            ++ V    E   S  +L+    DQS SDY+V++ R +TSG +++ S+FFE FI G    
Sbjct: 273 LIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG--GR 326
Query: 201 TVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPG 260
           TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR      G + N H F     
Sbjct: 327 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHIF----- 377
Query: 261 DCPNATSGSTETTIPFITLLYRPGHYDILY 290
                     E + P + LLYRPGHYDILY
Sbjct: 378 ---------PEGSEPKVYLLYRPGHYDILY 398
>pdb|2ZFY|A Chain A, Crystal Structure Of Human Otubain 1 Length = 234 Back     alignment and structure
>pdb|3VON|A Chain A, Crystalstructure Of The Ubiquitin Protease Length = 228 Back     alignment and structure
>pdb|4I6L|A Chain A, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 229 Back     alignment and structure
>pdb|4DHZ|A Chain A, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub Length = 288 Back     alignment and structure
>pdb|4DHI|B Chain B, Structure Of C. Elegans Otub1 Bound To Human Ubc13 Length = 284 Back     alignment and structure
>pdb|1TFF|A Chain A, Structure Of Otubain-2 Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
4ddg_A399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 2e-98
4dhi_B284 Ubiquitin thioesterase otubain-like; ubiquitin E2 1e-89
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 2e-87
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 3e-85
3pfy_A185 OTU domain-containing protein 5; structural genomi 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 7e-04
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399 Back     alignment and structure
 Score =  293 bits (752), Expect = 2e-98
 Identities = 114/281 (40%), Positives = 162/281 (57%), Gaps = 26/281 (9%)

Query: 10  SCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVL 69
           + ++    +  DE IM QQ  I+ E A + P V+++  LS L  EY     I  +KIK L
Sbjct: 144 TQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDL 203

Query: 70  GEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADF 129
            ++Y+ IR+TR DGN F+R+F FS+LE +L   D  E+ R KA   + +  L S G  +F
Sbjct: 204 HKKYSYIRKTRPDGNSFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEF 261

Query: 130 TFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEF 189
           T EDF   F++ ++ V +      S  +L+    DQS SDY+V++ R +TSG +++ S+F
Sbjct: 262 TIEDFHNTFMDLIEQVEKQ----TSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKF 317

Query: 190 FEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGAS 249
           FE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR      G +
Sbjct: 318 FEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGT 371

Query: 250 VNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
            N H F               E + P + LLYRPGHYDILY
Sbjct: 372 TNPHIF--------------PEGSEPKVYLLYRPGHYDILY 398
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284 Back     alignment and structure
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234 Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234 Back     alignment and structure
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
4dhi_B284 Ubiquitin thioesterase otubain-like; ubiquitin E2 100.0
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 100.0
4ddg_A399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 100.0
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 100.0
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 99.82
3pfy_A185 OTU domain-containing protein 5; structural genomi 99.71
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.71
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.65
3fx7_A94 Putative uncharacterized protein; double helix, un 82.16
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Back     alignment and structure
Probab=100.00  E-value=5.4e-83  Score=588.01  Aligned_cols=266  Identities=35%  Similarity=0.653  Sum_probs=219.3

Q ss_pred             ccccCCcccCCCCCC-ChHHHHHHHHHHH--HHHhhcCCccccCCChhHHHHhhccCC-hHHHHHHHHHHhhcccccccc
Q 022771            5 EKCGASCEFDDWSNF-EDEDIMQQQSDIK--AEEAQKVPFVADKEPLSALASEYQSGS-PILLEKIKVLGEQYAAIRRTR   80 (292)
Q Consensus         5 ~~~~~~~~~~~~~~~-~d~~~~~q~~~i~--~e~~~~~plVg~~~~~~~L~~eY~~~~-~~~~~Ki~~L~~~y~~~R~vR   80 (292)
                      ||-.++++.+..++. +||+|++|+++|+  +|++.++||||+++|+++|++||++++ |+|++||++|+++|+++|+||
T Consensus         4 ~~~~~~~~~~~~~~~~~de~i~~q~~~i~~~~e~a~~~PLVg~~~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~~~R~~R   83 (284)
T 4dhi_B            4 EPQKSDDNGQAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIR   83 (284)
T ss_dssp             ----------------------------------CTTCCSBCCCEEGGGGGGCTTSCCSHHHHHHHHHHHTTEEEEECBC
T ss_pred             CcccCCccccccCCcCcHHHHHHHHHHhHhhhhhhccCCCcCCcCcHHHHHHHhccCchHHHHHHHHHHHHhccceeeec
Confidence            556677788888887 5999999999999  999999999999999999999999888 899999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 022771           81 GDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVV  160 (292)
Q Consensus        81 GDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~  160 (292)
                      ||||||||||+|+|||+|+.  +++++.||++++++++..|.++||++++++||+++|+++|+++.++..   +.+.|++
T Consensus        84 GDGNCFyRAf~F~ylE~Ll~--~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~---~~~~L~~  158 (284)
T 4dhi_B           84 GDGNCFYRAILVGLIEIMLK--DRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVH---TEEAVYT  158 (284)
T ss_dssp             CSTTHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCS---CHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCC---cHHHHHH
Confidence            99999999999999999998  778999999999999999999999999999999999999999976542   4688999


Q ss_pred             HhhhccCchHHHHHHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecC
Q 022771          161 RSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDR  240 (292)
Q Consensus       161 ~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~  240 (292)
                      +|||+..|++||+|||++||+||++|+++|+||+.+.  .++++||+++|+||++|||||+|+|||++|++||+|+|+||
T Consensus       159 ~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~--~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDr  236 (284)
T 4dhi_B          159 ILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG--MTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDR  236 (284)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT--CCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSG
T ss_pred             HhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC--CCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecC
Confidence            9999999999999999999999999999999999873  68999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccc-CCCCCCCCCCCCCCCCCCCCCeEEEEecCCCccccccC
Q 022771          241 SSCDSGGASVNHHD-FIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK  292 (292)
Q Consensus       241 ~~~~~~~~~v~~~~-f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~~  292 (292)
                      ++    |.+|++|+ | |+..          ....|.|+|||||||||||||+
T Consensus       237 s~----g~~v~~h~~f-p~~~----------~~~~p~I~LLYrpgHYDILY~~  274 (284)
T 4dhi_B          237 TA----APNGGWHYDI-PSDD----------QQIAPEITLLYRPGHYDVIYKK  274 (284)
T ss_dssp             GG----CTTSSSEEEE-SCCC----------SCCCCSEEEEEETTEEEEEEEC
T ss_pred             CC----CCCCcccccC-CCCC----------CCCCCEEEEeecCCCccccccC
Confidence            87    56789998 9 7631          1236899999999999999996
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Back     alignment and structure
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Back     alignment and structure
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Back     alignment and structure
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Back     alignment and structure
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1tffa_228 d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB 2e-70
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  215 bits (548), Expect = 2e-70
 Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 28/252 (11%)

Query: 41  FVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILA 100
            +++K  + ++  ++   + I   KI+ L +++ AIR+T+GD NCF+R+  +SYLE +L 
Sbjct: 2   LISEKCDILSILRDH-PENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLL- 59

Query: 101 SQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVV 160
                E+ + K +V +    L + G  +  F +FF  F   ++ V +      S   L+ 
Sbjct: 60  -GKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKD----GSVSSLLK 114

Query: 161 RSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHV 220
              DQS SD++V F R +TS  IR R++FF  FI       ++ FC   VEPM  E DH+
Sbjct: 115 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDE--EMDIKDFCTHEVEPMATECDHI 172

Query: 221 HITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLL 280
            ITALS AL + ++V Y+D         ++NHH F               E   P + LL
Sbjct: 173 QITALSQALSIALQVEYVDEMDT-----ALNHHVF--------------PEAATPSVYLL 213

Query: 281 YRPGHYDILYPK 292
           Y+  HY+ILY  
Sbjct: 214 YKTSHYNILYAA 225

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1tffa_228 Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 100.0
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-64  Score=453.48  Aligned_cols=225  Identities=36%  Similarity=0.655  Sum_probs=202.5

Q ss_pred             CccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 022771           40 PFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRR  119 (292)
Q Consensus        40 plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i~~~~~  119 (292)
                      .|||+++|+++|.+||+ ++|+|++|++.|.++|+++|+||||||||||||+|+|||+|+.  +++++.++++++.+++.
T Consensus         1 ~lv~~~~~~~~~~~ey~-~~~~~~~k~~~L~~~y~~~R~vRgDGNCFYRaf~f~yle~Ll~--~~~~~~~~~~~i~~~~~   77 (228)
T d1tffa_           1 NLISEKCDILSILRDHP-ENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLG--KSREIFKFKERVLQTPN   77 (228)
T ss_dssp             CCBCCCBCTTHHHHSCS-GGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHcc-CCHHHHHHHHHHHHhccceEeecCCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence            38999999999999998 4899999999999999999999999999999999999999985  78899999999999999


Q ss_pred             HHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHHHHHHhcccccccccccCCCc
Q 022771          120 TLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTN  199 (292)
Q Consensus       120 ~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~Fi~~~~~  199 (292)
                      .+...||+++++++|++.|+++|+.+.+    +.+.++|++.|||+..|+++|+|||++||.||+.|++.|.||+.+.  
T Consensus        78 ~l~~~~~~~~~~e~f~~~~~~li~~~~~----~~~~~~l~~~f~~~~~s~~iv~~lR~l~s~~i~~~~~~y~~Fi~~~--  151 (228)
T d1tffa_          78 DLLAAGFEEHKFRNFFNAFYSVVELVEK----DGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEE--  151 (228)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHH----TCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT--
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHcCccccchHHHHHHHHHHHHHHHCHHHHHhHhcCC--
Confidence            9999999999999999999999987743    2467899999999999999999999999999999999999999763  


Q ss_pred             ccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEE
Q 022771          200 ATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITL  279 (292)
Q Consensus       200 ~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~L  279 (292)
                      .++++||.++|+|+++||||++|.|||++|+++|+|+|+|++++     .+++|.+ |+.             ..|.|+|
T Consensus       152 ~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~-----~~~~~~~-~~~-------------~~~~I~L  212 (228)
T d1tffa_         152 MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDT-----ALNHHVF-PEA-------------ATPSVYL  212 (228)
T ss_dssp             SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC------------CCCC-CCC-------------SSCSEEE
T ss_pred             ccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCC-----ccccccC-CCC-------------CCCEEEE
Confidence            57999999999999999999999999999999999999998762     4677766 331             2578999


Q ss_pred             EecCCCccccccC
Q 022771          280 LYRPGHYDILYPK  292 (292)
Q Consensus       280 LyrPGHYDILY~~  292 (292)
                      ||||||||||||+
T Consensus       213 ly~pgHYdiLY~~  225 (228)
T d1tffa_         213 LYKTSHYNILYAA  225 (228)
T ss_dssp             EEETTEEEEEEEC
T ss_pred             EeCCCCcccCccC
Confidence            9999999999995