Query 022772
Match_columns 292
No_of_seqs 132 out of 538
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2869 Meiotic cell division 100.0 3.5E-84 7.6E-89 585.2 26.3 290 1-290 1-290 (379)
2 TIGR00111 pelota probable tran 100.0 3.8E-78 8.2E-83 570.3 35.8 275 1-290 1-276 (351)
3 COG1537 PelA Predicted RNA-bin 100.0 5.4E-70 1.2E-74 501.7 32.2 271 1-290 1-271 (352)
4 TIGR00108 eRF peptide chain re 100.0 1E-40 2.2E-45 320.7 11.0 242 30-289 28-290 (409)
5 PF03463 eRF1_1: eRF1 domain 1 100.0 1.3E-40 2.9E-45 274.0 7.8 130 1-130 1-131 (132)
6 TIGR03676 aRF1/eRF1 peptide ch 100.0 1.6E-35 3.5E-40 283.9 23.6 197 75-289 76-286 (403)
7 PRK04011 peptide chain release 100.0 8E-35 1.7E-39 280.1 23.8 199 75-290 83-295 (411)
8 PF03464 eRF1_2: eRF1 domain 2 100.0 5.2E-31 1.1E-35 217.2 15.9 126 136-268 1-133 (133)
9 COG1503 eRF1 Peptide chain rel 99.9 3.6E-26 7.8E-31 215.8 12.6 248 15-290 29-294 (411)
10 KOG0688 Peptide chain release 99.8 2.5E-20 5.4E-25 169.5 5.8 198 76-290 85-295 (431)
11 PF10116 Host_attach: Protein 92.7 0.66 1.4E-05 38.1 7.8 84 138-221 2-110 (138)
12 TIGR01175 pilM type IV pilus a 68.5 68 0.0015 29.9 11.1 89 137-225 190-306 (348)
13 PF03485 Arg_tRNA_synt_N: Argi 60.8 9.5 0.00021 28.3 2.9 27 187-213 54-81 (85)
14 COG1855 ATPase (PilT family) [ 60.2 52 0.0011 32.9 8.5 132 74-226 146-288 (604)
15 COG0018 ArgS Arginyl-tRNA synt 55.1 23 0.00049 36.3 5.4 27 187-213 57-84 (577)
16 COG1105 FruK Fructose-1-phosph 48.0 87 0.0019 29.5 7.7 112 116-259 62-177 (310)
17 PF04628 Sedlin_N: Sedlin, N-t 46.2 1.5E+02 0.0032 23.9 8.0 71 120-197 35-106 (132)
18 PF00158 Sigma54_activat: Sigm 45.2 78 0.0017 26.7 6.4 58 181-251 7-64 (168)
19 PRK05082 N-acetylmannosamine k 44.7 51 0.0011 30.0 5.6 46 181-226 213-258 (291)
20 PRK09557 fructokinase; Reviewe 44.2 88 0.0019 28.6 7.2 45 181-225 224-268 (301)
21 smart00536 AXH domain in Ataxi 43.6 87 0.0019 25.2 5.9 82 13-127 12-95 (116)
22 COG4972 PilM Tfp pilus assembl 37.1 52 0.0011 31.4 4.4 46 180-225 259-311 (354)
23 PRK13310 N-acetyl-D-glucosamin 35.8 1.4E+02 0.003 27.3 7.1 46 181-226 225-270 (303)
24 PF08967 DUF1884: Domain of un 34.7 1.2E+02 0.0027 22.9 5.1 21 201-227 27-47 (85)
25 TIGR01917 gly_red_sel_B glycin 29.4 1.1E+02 0.0023 30.3 5.2 54 201-259 76-146 (431)
26 KOG0283 WD40 repeat-containing 29.0 4.8E+02 0.01 27.6 10.0 87 68-169 411-497 (712)
27 PF11104 PilM_2: Type IV pilus 28.7 2.8E+02 0.0061 25.9 8.0 88 136-225 181-298 (340)
28 PF09345 DUF1987: Domain of un 27.3 54 0.0012 25.5 2.4 22 71-92 2-23 (99)
29 PRK07511 enoyl-CoA hydratase; 26.3 1.6E+02 0.0035 26.3 5.7 29 183-211 29-57 (260)
30 smart00675 DM11 Domains in hyp 25.2 1.4E+02 0.0031 25.3 4.8 33 69-112 32-64 (164)
31 smart00732 YqgFc Likely ribonu 25.0 2.8E+02 0.006 20.3 7.6 27 183-213 37-63 (99)
32 PF06100 Strep_67kDa_ant: Stre 23.7 2.1E+02 0.0045 28.9 6.2 51 59-114 220-270 (500)
33 PRK09698 D-allose kinase; Prov 23.2 2.7E+02 0.0058 25.3 6.7 46 181-226 216-262 (302)
34 PRK05870 enoyl-CoA hydratase; 23.1 2.2E+02 0.0048 25.4 5.9 28 184-211 30-57 (249)
35 PRK07827 enoyl-CoA hydratase; 23.0 2.2E+02 0.0048 25.5 5.9 29 183-211 32-60 (260)
36 PRK05980 enoyl-CoA hydratase; 23.0 1.9E+02 0.0042 25.8 5.6 28 184-211 30-57 (260)
37 TIGR01918 various_sel_PB selen 22.8 1.6E+02 0.0035 29.0 5.1 54 201-259 76-146 (431)
38 PRK06127 enoyl-CoA hydratase; 22.8 4.2E+02 0.0091 23.9 7.8 41 164-211 25-65 (269)
39 PF01336 tRNA_anti-codon: OB-f 22.8 1.2E+02 0.0025 20.9 3.3 32 11-43 24-55 (75)
40 PRK15080 ethanolamine utilizat 22.5 2E+02 0.0043 26.1 5.6 87 137-225 137-245 (267)
41 PRK06072 enoyl-CoA hydratase; 22.2 2.3E+02 0.0049 25.3 5.8 42 163-211 13-54 (248)
42 COG5015 Uncharacterized conser 22.0 4.4E+02 0.0096 21.5 7.8 63 72-154 62-125 (132)
43 PF12984 DUF3868: Domain of un 21.9 2.1E+02 0.0046 22.6 4.9 39 66-106 29-67 (115)
44 PF07355 GRDB: Glycine/sarcosi 21.5 71 0.0015 30.6 2.4 54 201-259 80-150 (349)
45 PRK05995 enoyl-CoA hydratase; 21.5 2.2E+02 0.0049 25.5 5.7 28 184-211 31-58 (262)
46 PLN02664 enoyl-CoA hydratase/d 20.4 2.4E+02 0.0053 25.5 5.7 28 184-211 35-62 (275)
47 PRK08150 enoyl-CoA hydratase; 20.4 4.8E+02 0.01 23.3 7.6 26 184-211 29-54 (255)
48 cd03361 TOPRIM_TopoIA_RevGyr T 20.4 4E+02 0.0088 22.4 6.7 64 183-260 106-170 (170)
49 KOG1205 Predicted dehydrogenas 20.3 2.1E+02 0.0046 26.5 5.2 39 175-219 165-203 (282)
50 COG1940 NagC Transcriptional r 20.3 2.4E+02 0.0053 25.7 5.7 45 182-226 228-274 (314)
51 PRK06563 enoyl-CoA hydratase; 20.1 2.5E+02 0.0055 25.0 5.7 29 183-211 25-53 (255)
No 1
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-84 Score=585.20 Aligned_cols=290 Identities=55% Similarity=0.874 Sum_probs=285.1
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
||++++++.++|.|+|+++||++|||||+||+|++||.|+|.|.|||+.+.++|+++++|+.++|+|+||+++||+.++.
T Consensus 1 MKli~K~~~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~~ 80 (379)
T KOG2869|consen 1 MKLIRKDIERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKACV 80 (379)
T ss_pred CccchhhhhcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEEEEEeeccccccE
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred EEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEE
Q 022772 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (292)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (292)
||++|+++++|++|++|+|||++|+++++|++.|++||++.+++|++||++..++++|+|+++||.|+||+++.++|...
T Consensus 81 L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr 160 (379)
T KOG2869|consen 81 LRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILR 160 (379)
T ss_pred EEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcE
Q 022772 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (292)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki 240 (292)
++|+.+||+||++..+++++.+++||++|.+++.+|++|+.++|+|||||||+++.|++|+.+++.+.++|.++.|++||
T Consensus 161 ~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk~kf 240 (379)
T KOG2869|consen 161 AKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENKSKF 240 (379)
T ss_pred HhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcccce
Confidence 99999999997777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 241 ~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
..+|+|+|+.++|+|+|.+|.+.+.|+|+|+++|+++||+|+.+|+++++
T Consensus 241 ~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~d 290 (379)
T KOG2869|consen 241 PLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPD 290 (379)
T ss_pred eEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999764
No 2
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=100.00 E-value=3.8e-78 Score=570.32 Aligned_cols=275 Identities=27% Similarity=0.475 Sum_probs=258.3
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
|||+++++ ++++|.|+|+||++||||||||||++||+|+|+|+|+|+++..+|+++ +|++++|+|+||+++|||++++
T Consensus 1 Mki~~~~~-~~~~g~v~l~pe~~dDlw~l~nli~~GD~V~~~T~Rkv~~~~~~g~~~-er~~~~l~i~Ve~ief~~~~~~ 78 (351)
T TIGR00111 1 MSIVEESF-NKGGAVIKLLPETLDDLWHLYQIIEKGDVEFAFTKRRTQDLDKIRSDK-SKDTVKLGIEVESVEFDMKTER 78 (351)
T ss_pred Cceeeeec-CCCcEEEEEEeCChHHHHHHHHhCCCCCEEEEEEEEEEeccccCCCcc-eEEEEEEEEEEEEEEecCCCCE
Confidence 99999997 777899999999999999999999999999999999999887788877 9999999999999999999999
Q ss_pred EEEEEEEeecc-cccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEE
Q 022772 81 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 159 (292)
Q Consensus 81 Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 159 (292)
|||+|+|+++| ++|++|+|||++|+||++|+|+|+||++|++++|++|++++.++.+++|+||+|+|+||+|+++++++
T Consensus 79 Lri~G~i~~~~e~~v~~G~~HTl~ie~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vv~d~g~A~i~ll~~~~~~~ 158 (351)
T TIGR00111 79 LRYKGVIVTGPEDDVPVGSYHTLEIKYVYPLSIIKQNWKKWQLKRLREAVEISKRPKTAAVVMEEGIAHVGLVRQYSVEE 158 (351)
T ss_pred EEEEEEEecCCcccccccceEEEEEcCCCcEEEEEecCCHHHHHHHHHHhccccCCcEEEEEEeCCcEEEEEEcCCEEEE
Confidence 99999999998 89999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCc
Q 022772 160 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 239 (292)
Q Consensus 160 ~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~k 239 (292)
++++++++||||++ +.+++++++||++|++++. +|++++|||||||||+|++|++||.+.+.+. ..+
T Consensus 159 ~~~i~~~iP~K~~~--~~~e~~~~~Ff~~v~~~l~---~~~~v~~iIiaGPGf~k~~f~~~l~~~~~~~--------~~k 225 (351)
T TIGR00111 159 IQKIEYHMPGKKRT--LKFGELRKEFYKEIAKKLL---NFDDLKTIIVAGPGFYKNDFYDFIFERYPEE--------ANK 225 (351)
T ss_pred EEEEEEeCCCCccc--chhHHHHHHHHHHHHHHHh---hhcccCEEEEECCHHHHHHHHHHHHHHhhhh--------hCC
Confidence 99999999999753 5688899999999999984 4468999999999999999999999887654 235
Q ss_pred EEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 240 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 240 i~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
.++.++||||++||+|+|++|.++++|+|+++++|.++||+||++|++|+.
T Consensus 226 ~ii~~~s~g~~~gl~EvL~~~~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~ 276 (351)
T TIGR00111 226 AVLENCSTGGRAGINEVLKRGLVARILQETRYAKEIMVIDEFLEHLAKDGD 276 (351)
T ss_pred cEEEecCCCchhHHHHHHhChHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 566799999999999999999999999999999999999999999999753
No 3
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=100.00 E-value=5.4e-70 Score=501.73 Aligned_cols=271 Identities=30% Similarity=0.505 Sum_probs=250.7
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
||++.++ .++|.++|+||++||||||||+|++||.|.|.|+|+.++....++++++|++|+|+|+||++|||+|+++
T Consensus 1 M~ile~~---~k~g~I~l~pE~lDDLw~L~~Ii~~GD~v~a~T~Rr~~~~d~~r~~~~eri~m~L~IkVe~ieF~~f~nr 77 (352)
T COG1537 1 MRILEED---KKRGVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGERIPMTLGIKVEKIEFDKFANR 77 (352)
T ss_pred Ccceecc---ccCceEEEecCChHHHHHHHHhcCCCCEEEEEEEEecccccccccCcceEEEEEEEEEEEEEEeeecccE
Confidence 9999999 5599999999999999999999999999999999993333334477889999999999999999999999
Q ss_pred EEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEE
Q 022772 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (292)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (292)
|||+|+++++++++++|+|||++|++|++|+|+|+.|+.+++++|++|++++.++.+++|++|+|+|+||+++++++.++
T Consensus 78 LRi~G~i~~~~e~~~~G~yHTi~v~~g~~i~I~K~~W~~~~lerLkeA~~~~~~~~~~~v~~degea~i~iv~~ygi~~~ 157 (352)
T COG1537 78 LRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEASKRPEVAIVVVDEGEAAIAIVRDYGIIIL 157 (352)
T ss_pred EEEEEEEEEcCcccccccceEEEeccCceEEEEEccCCHHHHHHHHHHhhcccCCceEEEEEecCceEEEEEeccceEEE
Confidence 99999999999998899999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcE
Q 022772 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (292)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki 240 (292)
++++.+.|||+.... +. ..+||..|++++.+.. +++.||||||||+|++|++|+.+.++++ .++
T Consensus 158 ~~i~~~~~gK~~~~~--~~--~~k~~~~i~~~~~~~~---~~~~iIvaGPGF~k~~~~~~~~~~~p~~---------~~~ 221 (352)
T COG1537 158 GKIRSGIPGKREGDI--RA--ERKFFDEIAKALKEYA---NLDIIIVAGPGFAKEDFYDFLRERYPEL---------ANI 221 (352)
T ss_pred EEEeccCCCCcccch--hh--HHHHHHHHHHHHHHhh---CCCeEEEeCCchHHHHHHHHHHHhcccc---------cce
Confidence 999999999854333 21 1899999999999987 6889999999999999999999998755 238
Q ss_pred EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 241 ~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
++.|+|++|.+||+|+|++|.+.++++++++++|.++||+|++.|++++.
T Consensus 222 ~~~~~s~~g~~gi~EvLkr~~v~ki~~e~ria~e~~~~e~fl~~iak~~~ 271 (352)
T COG1537 222 VIEDTSTGGRAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDD 271 (352)
T ss_pred EEEeccCcchHHHHHHHhhhhHHhHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999653
No 4
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=100.00 E-value=1e-40 Score=320.69 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=203.3
Q ss_pred hhhcCCCCEE--EEEeEEEEEeccCCCCccceEEEEEEEEEEEEEE-----eecCCCeEEEEEEEeecccccccCcEEEE
Q 022772 30 YNLIAPGDSV--MAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVD-----YDKEGSVLRIRGKNILENEHVKIGAFHTL 102 (292)
Q Consensus 30 ynli~~GD~V--~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~-----f~~~~~~Lri~G~i~~~~e~v~~G~~HTl 102 (292)
+.+|.|||.| .+.+.|.-...+++-.+++.|.++...|++.... --|.++.++++|.+..++++ |+|||+
T Consensus 28 sl~ipp~~~i~~~~~~l~~e~~~a~niks~~~r~~v~~ai~~~~~~lk~~~~~p~nglv~~~G~v~~~~~~---~~~~t~ 104 (409)
T TIGR00108 28 SLYIPPDRQISDVAKHLREELSQASNIKSKQTRKNVLSAIEAILQRLKLFNKPPENGLVIFCGMVPREGPT---EKMETY 104 (409)
T ss_pred EEEeCCCCcHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHhhccCCCCCCcEEEEEeEeccCCCc---ccEEEE
Confidence 4578888888 7777777433333333345666666665554433 35678999999999887743 899999
Q ss_pred EEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCC-cch---
Q 022772 103 EIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAG--- 177 (292)
Q Consensus 103 ~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~-~s~--- 177 (292)
+|+||+||+++|| ||++|++++|++|++.. +.+++|+||+|.|+||+++++++.+++++++++|+||+.| +|+
T Consensus 105 ~iep~~pi~~~~y~~d~~f~le~L~e~~~~~--~~~g~VvvD~~~A~i~~l~g~~~~~~~~i~~~vp~K~~~GGqS~~Rf 182 (409)
T TIGR00108 105 VIEPPEPIKTYIYHCDSKFYLEPLSEMLEEK--DKYGLIVLDRQEATIGLVKGKRITVLKKLTSGVPGKHKAGGQSARRF 182 (409)
T ss_pred EEeCCCceEEEEEccCChhHHHHHHHHhcCC--CCEEEEEEecCCEEEEEEcCCEEEEEEEEeeeCCCcccCCCcchhhH
Confidence 9999999999998 89999999999999874 5999999999999999999999999999999999998764 444
Q ss_pred ---hHHHHHHHHHHHHHHHHhcc---CcCCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccCCcE-EEEecCCC
Q 022772 178 ---YESALNKFFENVLQAFLKHV---DFNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENKSRI-ILVHTSSG 248 (292)
Q Consensus 178 ---~~~~~~~Ff~~v~~~l~~~~---~~~~vk~IiIaGPGf~kd~f~~--yl~~~~~~~~~~~~~~~~~ki-~~~~tS~~ 248 (292)
++++.++||++|++++.++| +..++++||||||||+|++|.+ ||..++. +++ .++|+|+|
T Consensus 183 ~r~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~IIlaGpg~~K~~f~~~~~l~~~l~-----------~kvi~~vdvs~g 251 (409)
T TIGR00108 183 ERLRELAAHEFLKKVGEVANEAFLPNDDVKLKGIILGGPGHTKEEFAEGEYLHHELK-----------KKVISTVDVSYT 251 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEeccHHHHHHhhhhhhHHHHhh-----------hhEEEEEEcCCC
Confidence 57889999999999999986 2237999999999999999998 8887753 344 47899999
Q ss_pred ccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhccc
Q 022772 249 YKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 249 ~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
|.+|++|+|.+. +++|+++++++|.++|++||++|++|+
T Consensus 252 g~~gl~E~l~~~--~~~L~~~k~~~E~~lle~F~~ei~~d~ 290 (409)
T TIGR00108 252 GEFGIRELIEKS--ADVLAEVDYMREKKLVQRFLKELIQED 290 (409)
T ss_pred cccCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999965 999999999999999999999999864
No 5
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=100.00 E-value=1.3e-40 Score=274.01 Aligned_cols=130 Identities=49% Similarity=0.808 Sum_probs=122.8
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEec-cCCCCccceEEEEEEEEEEEEEEeecCCC
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQ-MASGSRDAERVKLKLEIKVEVVDYDKEGS 79 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~-~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~ 79 (292)
|||+++++.++++|.|+++||+.||||||||||.|||.|.|.|+|+|+.+ +.+++++++++++.|+|+|++++|||+++
T Consensus 1 Mki~~~~~~~~~~~~i~ll~e~~dDlw~L~~li~~gD~v~~~t~Rkv~~~~~~~~~~~~~~v~~~L~i~ve~v~~~~~~~ 80 (132)
T PF03463_consen 1 MKIISKDIEKNGKGLIKLLPEEKDDLWHLYNLIIPGDEVISKTTRKVQEASNIKGSKTRERVQIALTIKVEKVEFDPENG 80 (132)
T ss_dssp -EEEEECHCHHHHHEEEEETTSHHHHHHHHHHEETTTEEEECCHCHHHHCTCESSHHHHHCEEEEEEEEEEEEEEETTTT
T ss_pred CccchhhhccccCceEEEcccccCCcEEEEEEEECCCEEEEEEEEeeeecccccCCcceEEEEEEEEEEEEEeEecCCCC
Confidence 99999998878899999999999999999999999999999999999443 45667788999999999999999999999
Q ss_pred eEEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcC
Q 022772 80 VLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAAD 130 (292)
Q Consensus 80 ~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~ 130 (292)
.|||+|+|+.+|+++++|+|||++|+||+||+|+|++||++++++|++|++
T Consensus 81 ~Lri~G~i~~~~~~~~~G~~hT~~i~~~~~~ti~K~~wd~~~~~~l~ea~~ 131 (132)
T PF03463_consen 81 LLRISGKIVEENEDVKLGKYHTLDIEPGRPFTIIKYRWDSYFLDRLKEAMD 131 (132)
T ss_dssp EEEEEEEEEEGSCGGGTTSEEEEEEETSSEEEEEEEEEEHHHHHHHHHHTS
T ss_pred EEEEEeEEccCCCCCCcceEEEEEEeCCCceEEEEecCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999986
No 6
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=100.00 E-value=1.6e-35 Score=283.92 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=176.5
Q ss_pred ecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEc
Q 022772 75 DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVG 153 (292)
Q Consensus 75 ~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~ 153 (292)
-|.+|..-++|.+..+. ...+|||++|+||+||+++|| ||++|++++|++|++. ++.+++|+||++.|+||+++
T Consensus 76 ~p~nGlv~f~g~~~~~~---~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~--~~~~g~VvvD~~~A~i~~l~ 150 (403)
T TIGR03676 76 PPENGLVLFAGMVPTGG---GTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEE--KDVYGLIVLDRREATIGLLK 150 (403)
T ss_pred CCCCeEEEEEeeecCCC---CceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcC--CCCEEEEEEecCceEEEEEc
Confidence 58899999999997643 236899999999999999998 8899999999999987 46999999999999999999
Q ss_pred cceEEEEEEEEEecCCCCCCC-cch------hHHHHHHHHHHHHHHHHhccC---cCCccEEEEECCcccHHHHHH--HH
Q 022772 154 RSMTITRSRIETSIPRKHGPA-IAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPGFTKDQFHR--HL 221 (292)
Q Consensus 154 ~~~~~~~~~i~~~ip~K~~~~-~s~------~~~~~~~Ff~~v~~~l~~~~~---~~~vk~IiIaGPGf~kd~f~~--yl 221 (292)
++++++++++++++|+||+.| +|+ ++++.++||++|++++.++|. ..++++||||||||+|++|.+ ||
T Consensus 151 g~~~e~~~~i~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg~~K~~f~~~~~L 230 (403)
T TIGR03676 151 GKRIEVLKELTSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLPLKDKKLKGILIGGPGPTKEEFAEGDYL 230 (403)
T ss_pred CCEEEEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccEEEEeCCHHHHHHHhhhhhh
Confidence 999999999999999998754 454 788999999999999988752 126999999999999999999 99
Q ss_pred HHHHHhcccccccccCCcE-EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhccc
Q 022772 222 LLEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 222 ~~~~~~~~~~~~~~~~~ki-~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
.++.. +++ .++++|+++.+|++|++++ ++++|++.++++|.++|++||+++++|+
T Consensus 231 ~~~l~-----------~kvi~~vd~s~~~~~Gl~Evl~~--~~~~L~~~k~~~E~~lle~f~~el~~d~ 286 (403)
T TIGR03676 231 HHELK-----------KKILGLFDVSYTGESGLRELVEK--AEDLLKDLELMKEKKLMERFFKELVKDG 286 (403)
T ss_pred hHHHH-----------hhEEEEEecCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99752 354 6889999999999999998 5999999999999999999999999875
No 7
>PRK04011 peptide chain release factor 1; Provisional
Probab=100.00 E-value=8e-35 Score=280.10 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=178.0
Q ss_pred ecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEc
Q 022772 75 DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVG 153 (292)
Q Consensus 75 ~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~ 153 (292)
-|.+|..-++|.+..+++ ..|.|||++|+||+||+++|| ||+.|++++|++|++. ++.+++|+||+|.|+||+++
T Consensus 83 ~p~nGl~~f~g~~~~~~~--~~~~~~t~~i~p~~~i~~~~y~~d~~f~le~L~e~~~~--~~~~~~VvvD~~~A~i~~l~ 158 (411)
T PRK04011 83 PPENGLVIFCGAVPIGGP--GTEDMETYVIEPPEPVPTFFYRCDSEFHTEPLEDMLED--KEVYGLIVVDRREATIGLLK 158 (411)
T ss_pred CCCCeEEEEEeecccCCC--CCceEEEEEEcCCCccEEEEecCCcHHHHHHHHHHhcC--CCCEEEEEEecCceEEEEEe
Confidence 567899999999876542 238999999999999999999 7788999999999987 66999999999999999999
Q ss_pred cceEEEEEEEEEecCCCCCCC-cch------hHHHHHHHHHHHHHHHHhccC---cCCccEEEEECCcccHHHHHH--HH
Q 022772 154 RSMTITRSRIETSIPRKHGPA-IAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPGFTKDQFHR--HL 221 (292)
Q Consensus 154 ~~~~~~~~~i~~~ip~K~~~~-~s~------~~~~~~~Ff~~v~~~l~~~~~---~~~vk~IiIaGPGf~kd~f~~--yl 221 (292)
++++++++++++++|+||+.| +|+ ++++.++||++|++++.++|. +.++++||||||||+|++|.+ ||
T Consensus 159 g~~~~~~~~i~~~vp~K~~~GG~S~~Rf~r~~e~~~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K~~f~~~~~L 238 (411)
T PRK04011 159 GKRIEVLKELTSFVPGKHRKGGQSARRFERLIEQAAHEFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTKEEFLEGDYL 238 (411)
T ss_pred CCEEEEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECChhHHHHHhhhhhh
Confidence 999999999999999998754 444 588999999999999998873 478999999999999999999 99
Q ss_pred HHHHHhcccccccccCCcE-EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 222 LLEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 222 ~~~~~~~~~~~~~~~~~ki-~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
.++.. +++ -++++|+++.+|++|+|++ ++++|+++++++|.++|++||+++++++.
T Consensus 239 ~~~l~-----------~~vv~~~~~s~~~~~Gl~E~l~~--~~~~L~~~k~~~e~~lle~f~~~l~~d~g 295 (411)
T PRK04011 239 HYELK-----------KKILGLFDVSYTGESGLRELVDK--ASDLLKEQELVKEKKLMEEFFKELAKDGG 295 (411)
T ss_pred hHHHH-----------hheEEEEecCCCCccCHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhcCCC
Confidence 99863 233 5789999999999999997 59999999999999999999999998653
No 8
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=99.97 E-value=5.2e-31 Score=217.22 Aligned_cols=126 Identities=42% Similarity=0.664 Sum_probs=114.0
Q ss_pred cEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCC-cch----hHHHHHHHHHHHHHHHHhc--cCcCCccEEEEE
Q 022772 136 DLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAG----YESALNKFFENVLQAFLKH--VDFNVVRCAVIA 208 (292)
Q Consensus 136 ~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~-~s~----~~~~~~~Ff~~v~~~l~~~--~~~~~vk~IiIa 208 (292)
++++|+||+|+|+||+++++++++++++++++|+||+.| +|+ +++++++||++|++++.++ .+++++++||||
T Consensus 1 ~v~~v~id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIia 80 (133)
T PF03464_consen 1 KVGIVVIDEGEANICLLRGYGTEILQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIA 80 (133)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEE
T ss_pred CEEEEEEeCCCEEEEEEcCCEEEEEEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEE
Confidence 479999999999999999999999999999999998865 454 3899999999999999999 789999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHHHHhcChhHHHHhhh
Q 022772 209 SPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKD 268 (292)
Q Consensus 209 GPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~EvL~~~~v~~~l~d 268 (292)
||||+|++|++|+..++.+.+ +.++++++||+++++||+|+|++|+++++|+|
T Consensus 81 GPGf~k~~f~~~l~~~~~~~~-------~~~i~~~~~s~~~~~gl~Evl~~~~v~~~l~d 133 (133)
T PF03464_consen 81 GPGFTKEEFYKYLKAEARRKD-------KKKIVVVDTSSGGESGLNEVLKRPEVQKILKD 133 (133)
T ss_dssp ESTTHHHHHHHHHHHHHHHHT-------CCEEEEEE-SSSCHHHHHHHHHSHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhhHhhc-------CCEEEEEECCCCCHHHHHHHHHhhhHHHHhcC
Confidence 999999999999999986552 25789999999999999999999999999986
No 9
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.6e-26 Score=215.79 Aligned_cols=248 Identities=17% Similarity=0.164 Sum_probs=197.2
Q ss_pred eEEEeccC----CchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCeEEEEEEEeec
Q 022772 15 SVKMEPVD----SDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILE 90 (292)
Q Consensus 15 ~v~l~pE~----~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~Lri~G~i~~~ 90 (292)
.+++.|-- .|=+=+|....+.=.-+.+.++|+=.... ...-..|.+ ...=.|.++...++|.+..+
T Consensus 29 lislyIPp~~qisdv~~~lr~e~s~asniksk~tR~~V~~a--i~~~~~rLk--------~~~~~P~nGlv~f~g~v~~~ 98 (411)
T COG1503 29 LISLYIPPDRQISDVVNRLRDEYSTASNIKSKVTRKNVLSA--IESAMQRLK--------DYCKTPENGLVLFVGDVLGG 98 (411)
T ss_pred EEEEecCCCCchHHHHHHHHhhccchhhhhhcCchHHHHhH--HHHHHHHHH--------hcccCCCCCeEEEEeeeccC
Confidence 46665521 22344555666666667777666622211 111122222 22335689999999999765
Q ss_pred ccccccCcEEEEEEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEEEEEEEecCC
Q 022772 91 NEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPR 169 (292)
Q Consensus 91 ~e~v~~G~~HTl~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~ 169 (292)
... ...-|..++||+|++.+.| |.+.|++++|+++..+.. .++++++|.++|+|++|.+..+.+++++++.+||
T Consensus 99 ~~~---t~~~~~~~~PP~Pi~~~ly~cDs~F~~e~L~~~l~~~~--~ygliv~dr~ea~ig~l~g~r~evl~~~~s~vpg 173 (411)
T COG1503 99 GGK---TKKVTVVIEPPEPINTFLYRCDSKFYLEPLEEMLEDKD--LYGLIVLDRIEATIGLLKGKRIEVLKELTSDVPG 173 (411)
T ss_pred CCc---cceeeecccCCCCcceeeeccccHHHHHHHHHHhhhcc--cccEEEEecccceeeeeccceeeHhhhhcccCcc
Confidence 322 2346777899999999999 899999999999998854 8999999999999999999999999999999999
Q ss_pred CCCCCc-ch------hHHHHHHHHHHHHHHHHhccC---cCCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccC
Q 022772 170 KHGPAI-AG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENK 237 (292)
Q Consensus 170 K~~~~~-s~------~~~~~~~Ff~~v~~~l~~~~~---~~~vk~IiIaGPGf~kd~f~~--yl~~~~~~~~~~~~~~~~ 237 (292)
||++|+ |+ ++.+.+.||+.|++++.++|. ..++++|+|+|||.+|++|++ ||+++.+
T Consensus 174 Kh~~Ggqsa~rferl~ee~~h~f~k~vge~A~e~f~~~~~~~~kgIilgGp~~tk~ef~e~~yL~~~lk----------- 242 (411)
T COG1503 174 KHRAGGQSARRFERLIEEAAHEFYKKVGEAASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYLHHELK----------- 242 (411)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcceEeeCCcccchhhhcccccchHHH-----------
Confidence 998765 44 677899999999999999984 226999999999999999999 9998863
Q ss_pred CcE-EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 238 SRI-ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 238 ~ki-~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
+++ -++++||++++|++|++... .+.|+++++.+|.++|++|++.+++++-
T Consensus 243 ~kv~~lvDv~y~~esg~~eli~~A--~d~L~~~~~~~eK~l~e~f~~e~~~~~G 294 (411)
T COG1503 243 KKVLGLVDVSYTGESGLRELIEKA--EDALKDVDYVREKKLMEEFFKELAKDSG 294 (411)
T ss_pred HHHHhhccccccccccHHHHHHHh--HHHHHhhhhhcchhHHHHHHHHhccCcc
Confidence 343 47999999999999999998 9999999999999999999999998654
No 10
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.5e-20 Score=169.53 Aligned_cols=198 Identities=12% Similarity=0.175 Sum_probs=169.7
Q ss_pred cCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEcc
Q 022772 76 KEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGR 154 (292)
Q Consensus 76 ~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~ 154 (292)
|.++..-.+|.++.+. ..-+--+++++|-+||...-| |.++||++.|.+.+.... .+++++||...+.++++.+
T Consensus 85 Ppnglvly~gti~ted---gkekkv~idfepfkpintslyLcdNkfhte~l~~Ll~sd~--kfgfivmDg~~tlfgtl~g 159 (431)
T KOG0688|consen 85 PPNGLVLYTGTIVTED---GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALKELLESDN--KFGFIVMDGNGTLFGTLQG 159 (431)
T ss_pred CCCceEEEeeeeEccC---CceeeeecccccccccccceEecCCccchHHHHHHHhhcc--cccEEEEcCCceeEEEecc
Confidence 6688888999998654 123456899999999987766 999999999999998866 7999999999999999999
Q ss_pred ceEEEEEEEEEecCCCCCCCcch-------hHHHHHHHHHHHHHHHHhcc---CcCCccEEEEECCcccHHHHHHH-HHH
Q 022772 155 SMTITRSRIETSIPRKHGPAIAG-------YESALNKFFENVLQAFLKHV---DFNVVRCAVIASPGFTKDQFHRH-LLL 223 (292)
Q Consensus 155 ~~~~~~~~i~~~ip~K~~~~~s~-------~~~~~~~Ff~~v~~~l~~~~---~~~~vk~IiIaGPGf~kd~f~~y-l~~ 223 (292)
+.-.+++++.+.+|+||++|+++ |.+..+.|.+.+++...+++ +..++.++|+||..-+|.++.+. |++
T Consensus 160 ntrevLhkftVdlPkkhgrggqSalrfarlR~ekRhnYVrkvae~a~q~fi~~~~~Nv~gLilaGsadfKtelsqSd~fd 239 (431)
T KOG0688|consen 160 NTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAELAVQRFITNDKPNVAGLILAGSADFKTELSQSDMFD 239 (431)
T ss_pred chHhhhheeeecCccccCccchhHHhhhhhhhhhhccceeeecccceeEEecCCCcceeEEEEecccccccccchhhhcc
Confidence 99999999999999999887543 66677899999999998887 56789999999999888888763 444
Q ss_pred HHHhcccccccccCCc-EEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 224 EAERRQLRPIIENKSR-IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 224 ~~~~~~~~~~~~~~~k-i~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
. |+ +.+ +.++++||||++|++++|.-. .++|++.++++|.+++.+||++++.|+.
T Consensus 240 ~--rl--------qskvi~~vdvsyGGengfnQaIeL~--aevlsnvk~vqekkli~~yfdEisqdtg 295 (431)
T KOG0688|consen 240 P--RL--------QSKVLKTVDVSYGGENGFNQAIELS--AEVLSNVKFVQEKKLIGKYFDEISQDTG 295 (431)
T ss_pred h--HH--------hhhHHhhhcccccchhhHHHHHHHH--HhhhhcceeeehhhHHHHHhhhhhcccC
Confidence 4 22 344 357999999999999999976 9999999999999999999999998763
No 11
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=92.69 E-value=0.66 Score=38.05 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=53.9
Q ss_pred EEEEEeCCeEEEEEEccceEEEE---------------EEEEEecCCCCCCCc----------chhHHHHHHHHHHHHHH
Q 022772 138 AVVLMQEGLAHILLVGRSMTITR---------------SRIETSIPRKHGPAI----------AGYESALNKFFENVLQA 192 (292)
Q Consensus 138 ~~vvid~g~A~i~ll~~~~~~~~---------------~~i~~~ip~K~~~~~----------s~~~~~~~~Ff~~v~~~ 192 (292)
.+||.|.+.|-|+...+.....+ ..+...-||....+. +..+...++|.++|++.
T Consensus 2 wVvVaD~~~Ar~f~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~d~~Gr~~~~~g~~~~~~~~~~~~~~~~~~Fa~~vA~~ 81 (138)
T PF10116_consen 2 WVVVADGSRARIFENEGDESEPLLELEELDHPESRLKDRDLVSDRPGRFHDSAGQRGSMEERTDPKEEEEERFAREVADR 81 (138)
T ss_pred EEEEEecceeEEEEecCCCCCcchhhhhhcccccccchhhhccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57888999999988877754111 233445555321110 12667889999999999
Q ss_pred HHhccCcCCccEEEEECCcccHHHHHHHH
Q 022772 193 FLKHVDFNVVRCAVIASPGFTKDQFHRHL 221 (292)
Q Consensus 193 l~~~~~~~~vk~IiIaGPGf~kd~f~~yl 221 (292)
|.+...-...+.+||++|--+=-.+.+-|
T Consensus 82 L~~~~~~~~~~~LvlvA~p~~LG~LR~~L 110 (138)
T PF10116_consen 82 LEKARRAGKFDRLVLVAPPRFLGLLREHL 110 (138)
T ss_pred HHHHHHhCCCCeEEEEECHHHHHHHHHHh
Confidence 99998766777777777763333333333
No 12
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=68.52 E-value=68 Score=29.88 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=56.5
Q ss_pred EEEEEEeCCeEEEEEEccceEEEEEEEEEe-------------cCC------CCCCCc--chhHHHHHHHHHHHHHHHHh
Q 022772 137 LAVVLMQEGLAHILLVGRSMTITRSRIETS-------------IPR------KHGPAI--AGYESALNKFFENVLQAFLK 195 (292)
Q Consensus 137 ~~~vvid~g~A~i~ll~~~~~~~~~~i~~~-------------ip~------K~~~~~--s~~~~~~~~Ff~~v~~~l~~ 195 (292)
+++|-+..+...++++.+........+..+ +|- |...+. ......++.++++++..+.+
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i~~~~~~~~~~Ae~~k~~~~~~~~~~~~~~~~~~~~l~~eI~~ 269 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYGLNPEEAGEAKQQGGLPLLYDPEVLRRFKGELVDEIRR 269 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHHHHHcCCCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 778888899999999988887777666642 110 000110 00122344555566555555
Q ss_pred ccCc-------CCccEEEEECCcccHHHHHHHHHHHH
Q 022772 196 HVDF-------NVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 196 ~~~~-------~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
.+++ ..+..|+|+|-|.--..|.+++.+..
T Consensus 270 ~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 270 SLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred HHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 5432 25889999998887788988887764
No 13
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=60.75 E-value=9.5 Score=28.31 Aligned_cols=27 Identities=15% Similarity=0.459 Sum_probs=20.8
Q ss_pred HHHHHHHHhccCcC-CccEEEEECCccc
Q 022772 187 ENVLQAFLKHVDFN-VVRCAVIASPGFT 213 (292)
Q Consensus 187 ~~v~~~l~~~~~~~-~vk~IiIaGPGf~ 213 (292)
.+|++.+.+++... .++.+=++||||+
T Consensus 54 ~~iA~~i~~~l~~~~~i~~vev~gpGFi 81 (85)
T PF03485_consen 54 REIAEEIAEKLEKSPIIEKVEVAGPGFI 81 (85)
T ss_dssp HHHHHHHHHCHCTTTTEEEEEEETTTEE
T ss_pred HHHHHHHHHhcCCCCCEEEEEEcCCcEE
Confidence 46788888777433 3889999999986
No 14
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=60.17 E-value=52 Score=32.92 Aligned_cols=132 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred eecCCCeEEEEEEEeecccccccC---cEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEE
Q 022772 74 YDKEGSVLRIRGKNILENEHVKIG---AFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHIL 150 (292)
Q Consensus 74 f~~~~~~Lri~G~i~~~~e~v~~G---~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ 150 (292)
||+.+=+++++-=+ +|..|.| ..+-..|. .+|++ ...-..++.+.+++|... +=.++=|+...|++.
T Consensus 146 Fd~~TMSvHLKeg~---~P~aK~GkpG~~k~v~l~-d~pl~--~~ele~ia~eIi~~a~~~----~~sfIEi~r~GatVv 215 (604)
T COG1855 146 FDEETMSVHLKEGV---PPMAKKGKPGEWKLVRLS-DKPLT--REELEEIAREIIERAKRD----PDSFIEIDRPGATVV 215 (604)
T ss_pred cCCcceEEeeccCC---CcccccCCCCcEEEEEcC-CccCC--HHHHHHHHHHHHHHHhhC----cCceEEEccCCceEE
Confidence 67666666666422 3444444 43333321 11111 112334445555554332 347999999999999
Q ss_pred EEccceEEEEE-------EEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEEC-CcccHHHHHHHHH
Q 022772 151 LVGRSMTITRS-------RIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIAS-PGFTKDQFHRHLL 222 (292)
Q Consensus 151 ll~~~~~~~~~-------~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaG-PGf~kd~f~~yl~ 222 (292)
-++.+.+.+-. +|+..=|=-+-. -..| ..-+ ++.+.|.+ .-.+|+||| ||-=|..|.+-|.
T Consensus 216 Qlrn~RIvIarPPfSd~~EITavRPvvk~~-ledY-~L~d----kl~eRL~e-----raeGILIAG~PGaGKsTFaqAlA 284 (604)
T COG1855 216 QLRNYRIVIARPPFSDRWEITAVRPVVKLS-LEDY-GLSD----KLKERLEE-----RAEGILIAGAPGAGKSTFAQALA 284 (604)
T ss_pred EeccEEEEEecCCCCCceEEEEEeeeEEec-hhhc-CCCH----HHHHHHHh-----hhcceEEecCCCCChhHHHHHHH
Confidence 99999887742 344433421000 0000 0001 22233332 466899988 6899999998766
Q ss_pred HHHH
Q 022772 223 LEAE 226 (292)
Q Consensus 223 ~~~~ 226 (292)
+-+.
T Consensus 285 efy~ 288 (604)
T COG1855 285 EFYA 288 (604)
T ss_pred HHHH
Confidence 6553
No 15
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.11 E-value=23 Score=36.31 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCcC-CccEEEEECCccc
Q 022772 187 ENVLQAFLKHVDFN-VVRCAVIASPGFT 213 (292)
Q Consensus 187 ~~v~~~l~~~~~~~-~vk~IiIaGPGf~ 213 (292)
++||+.+.+.++.+ .+..|-+|||||.
T Consensus 57 ~eiA~~i~~~l~~~~~~~~veiaGpgfI 84 (577)
T COG0018 57 REIAEEIAEKLDTDEIIEKVEIAGPGFI 84 (577)
T ss_pred HHHHHHHHHhccccCcEeEEEEcCCCEE
Confidence 46777777777544 4788999999975
No 16
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=48.01 E-value=87 Score=29.53 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=59.3
Q ss_pred cCChhhHHHHHhhcCCCCCCcEEEEEEe-CCeEEEEEEccceEEEEEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 022772 116 LWDSLALDTLHQAADPTASADLAVVLMQ-EGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFL 194 (292)
Q Consensus 116 ~w~~~~le~L~ea~~~~~~~~~~~vvid-~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~ 194 (292)
.+..+..+.|++.- -...++-+. +-.-++-++.+..- ..-+-+-||= . -.+...+.|.+.+...+.
T Consensus 62 ~tg~~~~~~l~~~g-----i~~~fv~v~g~TRinvki~~~~~~---~~Tein~~Gp---~--is~~~~~~~l~~~~~~l~ 128 (310)
T COG1105 62 FTGEFFVALLKDEG-----IPDAFVEVKGDTRINVKILDEEDG---EETEINFPGP---E--ISEAELEQFLEQLKALLE 128 (310)
T ss_pred ccHHHHHHHHHhcC-----CCceEEEccCCCeeeEEEEecCCC---cEEEecCCCC---C--CCHHHHHHHHHHHHHhcc
Confidence 46667777777642 244566554 34567777665310 0112233331 1 124455666665544443
Q ss_pred hccCcCCccEEEEEC---CcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHHHHhcC
Q 022772 195 KHVDFNVVRCAVIAS---PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDA 259 (292)
Q Consensus 195 ~~~~~~~vk~IiIaG---PGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~EvL~~ 259 (292)
+-++||++| ||.-.+.|.+. .+.+.+ .+..+++|+|- ..|+++|+-
T Consensus 129 ------~~d~VvlsGSlP~g~~~d~y~~l-i~~~~~---------~g~~vilD~Sg---~~L~~~L~~ 177 (310)
T COG1105 129 ------SDDIVVLSGSLPPGVPPDAYAEL-IRILRQ---------QGAKVILDTSG---EALLAALEA 177 (310)
T ss_pred ------cCCEEEEeCCCCCCCCHHHHHHH-HHHHHh---------cCCeEEEECCh---HHHHHHHcc
Confidence 345699999 56555555444 344321 34667888775 355555553
No 17
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=46.17 E-value=1.5e+02 Score=23.89 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=51.9
Q ss_pred hhHHHHHhhcCC-CCCCcEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhcc
Q 022772 120 LALDTLHQAADP-TASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHV 197 (292)
Q Consensus 120 ~~le~L~ea~~~-~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~ 197 (292)
-.|+.+++.... +...-++.|---++...-+.++..+++.+--.+.. .....+..+..||++|.+.-.+.+
T Consensus 35 ~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~~~-------~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 35 SSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHDMS-------DNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp HHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEECGG-------G-S--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEecc-------cCCcchHHHHHHHHHHHHHHHHHc
Confidence 457888887766 66667788888899999999999998888655521 112357889999999999988876
No 18
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=45.18 E-value=78 Score=26.72 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccc
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 251 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~ 251 (292)
++.+..+. +.+... .+...+|.+-||-=|+.|.+.+++.+.+. ...|+.++++.-...
T Consensus 7 ~m~~~~~~----~~~~a~-~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--------~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 7 AMKRLREQ----AKRAAS-SDLPVLITGETGTGKELLARAIHNNSPRK--------NGPFISVNCAALPEE 64 (168)
T ss_dssp HHHHHHHH----HHHHTT-STS-EEEECSTTSSHHHHHHHHHHCSTTT--------TS-EEEEETTTS-HH
T ss_pred HHHHHHHH----HHHHhC-CCCCEEEEcCCCCcHHHHHHHHHHhhhcc--------cCCeEEEehhhhhcc
Confidence 44444444 444433 23556777778999999999999876433 347999998775444
No 19
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=44.71 E-value=51 Score=29.99 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAE 226 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~ 226 (292)
.+++|...++..+......-++..|||+|+....+.|.+.+.+...
T Consensus 213 ~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~~~~~~~~~i~~~l~ 258 (291)
T PRK05082 213 LINRSAQAIARLIADLKATLDCQCVVLGGSVGLAEGYLELVQAYLA 258 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccHHHHHHHHHHHHH
Confidence 3445666666666665566678999999998777777776665553
No 20
>PRK09557 fructokinase; Reviewed
Probab=44.21 E-value=88 Score=28.58 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
.+++|.+.++.++......-++..|||+|+....+.|.+.+.+..
T Consensus 224 ~l~~~~~~La~~l~~l~~~ldP~~IvlgG~~~~~~~~~~~l~~~~ 268 (301)
T PRK09557 224 AFRRYEDRLAKSLAHVINILDPDVIVLGGGMSNVDRLYPTLPALL 268 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccchHHHHHHHHHHH
Confidence 455666667777776666678999999998765666776555544
No 21
>smart00536 AXH domain in Ataxins and HMG containing proteins. unknown function
Probab=43.58 E-value=87 Score=25.17 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=49.9
Q ss_pred CceEEEeccCC--chhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCeEEEEEEEeec
Q 022772 13 PGSVKMEPVDS--DDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILE 90 (292)
Q Consensus 13 ~g~v~l~pE~~--dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~Lri~G~i~~~ 90 (292)
+|..+ ..|+. ||+-.- -...++-.+.+.|.-++... ++. .+-.+.|++......
T Consensus 12 ~G~~k-rvEDl~teDfi~s-a~~s~~~~l~~stv~~i~~~---~~~-----------~~v~itF~~g~~~~~-------- 67 (116)
T smart00536 12 NGSNK-KVEDLKTEDFIRS-AECSNDEEIQMSTVKRIGSS---GLP-----------SVVTLTFDPGVEDAL-------- 67 (116)
T ss_pred CCCee-eeeccchhhhHhh-hccCCcccccceeEEEeCCC---CCc-----------ceEEEEEEecCccce--------
Confidence 34443 66777 887655 66677778999988888532 211 122566665433333
Q ss_pred ccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHh
Q 022772 91 NEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQ 127 (292)
Q Consensus 91 ~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~e 127 (292)
-|+++.+..||=++-..|+++.=++=-+
T Consensus 68 ---------v~~ev~~eHPfFV~gqGWsSc~P~lT~~ 95 (116)
T smart00536 68 ---------LTVECQVEHPFFVKGKGWSSCYPSLTVQ 95 (116)
T ss_pred ---------EEEEEecCCCeEEcCccccccChhhhhh
Confidence 3566666777766656999877554443
No 22
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.15 E-value=52 Score=31.35 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhccC-------cCCccEEEEECCcccHHHHHHHHHHHH
Q 022772 180 SALNKFFENVLQAFLKHVD-------FNVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 180 ~~~~~Ff~~v~~~l~~~~~-------~~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
..+..|..++.+.+.+.++ ..++++|+++|||-.-..+.+++.++.
T Consensus 259 ~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 259 EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 3567899999999988764 347999999999999999988887764
No 23
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.85 E-value=1.4e+02 Score=27.27 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAE 226 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~ 226 (292)
.+++|.+.++..+...++.-++..|||+|+-...+.|.+.+.+...
T Consensus 225 ~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~ 270 (303)
T PRK13310 225 HVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLP 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHH
Confidence 4556666666666666666688999999975444566665555543
No 24
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=34.68 E-value=1.2e+02 Score=22.85 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=11.9
Q ss_pred CccEEEEECCcccHHHHHHHHHHHHHh
Q 022772 201 VVRCAVIASPGFTKDQFHRHLLLEAER 227 (292)
Q Consensus 201 ~vk~IiIaGPGf~kd~f~~yl~~~~~~ 227 (292)
+++ |+++||. |++|+..+..+
T Consensus 27 ePD-ivL~G~e-----f~e~~~~~~l~ 47 (85)
T PF08967_consen 27 EPD-IVLVGPE-----FYEFLSEEVLE 47 (85)
T ss_dssp ----EEEE-HH-----HHHHHHH---E
T ss_pred CCC-EEEEcHH-----HHHHHHHHHHH
Confidence 344 8899997 89998886433
No 25
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.42 E-value=1.1e+02 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=34.2
Q ss_pred CccEEEEECCcccHHHHHH-------HHHHHHHhcccccc----------cccCCcEEEEecCCCccchHHHHhcC
Q 022772 201 VVRCAVIASPGFTKDQFHR-------HLLLEAERRQLRPI----------IENKSRIILVHTSSGYKHSLREVLDA 259 (292)
Q Consensus 201 ~vk~IiIaGPGf~kd~f~~-------yl~~~~~~~~~~~~----------~~~~~ki~~~~tS~~~~~gl~EvL~~ 259 (292)
+.+ ++||||.|-.-.|-. ++.++ ++.+.+ -.=++++.++.++. +-.|++++|..
T Consensus 76 ~pD-v~iaGPaFNagrYG~acg~va~aV~e~---~~IP~vtaMy~ENpgvd~yk~~vyIv~t~~-sa~gmr~al~~ 146 (431)
T TIGR01917 76 NPD-IFIAGPAFNAGRYGMAAGAITKAVQDE---LGIKAFTAMYEENPGADMFKKEVYVIPTAD-SAAGMRKALPA 146 (431)
T ss_pred CCC-EEEEcCccCCccHHHHHHHHHHHHHHh---hCCCeEEEecccChHHHHHhhCcEEEECCC-chhhHHHHHHH
Confidence 344 889999997777643 23332 222222 11245678888888 67899998875
No 26
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.95 E-value=4.8e+02 Score=27.58 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=59.3
Q ss_pred EEEEEEeecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeE
Q 022772 68 KVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLA 147 (292)
Q Consensus 68 ~Ve~v~f~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A 147 (292)
-|+.|.|.|-.++.-|+|-+ . |+-.-+.| +...|. .|.... +.+-.+|- .+.+..++|=.-.|.|
T Consensus 411 fVTcVaFnPvDDryFiSGSL-D-------~KvRiWsI-~d~~Vv----~W~Dl~-~lITAvcy-~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSL-D-------GKVRLWSI-SDKKVV----DWNDLR-DLITAVCY-SPDGKGAVIGTFNGYC 475 (712)
T ss_pred eeEEEEecccCCCcEeeccc-c-------cceEEeec-CcCeeE----eehhhh-hhheeEEe-ccCCceEEEEEeccEE
Confidence 38899999999999999965 1 33333443 233333 355444 55555553 3446889999999999
Q ss_pred EEEEEccceEEEEEEEEEecCC
Q 022772 148 HILLVGRSMTITRSRIETSIPR 169 (292)
Q Consensus 148 ~i~ll~~~~~~~~~~i~~~ip~ 169 (292)
.||...+...+.-..|...-.+
T Consensus 476 ~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred EEEEccCCeEEEeeeEeeccCc
Confidence 9999888877777776665333
No 27
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=28.69 E-value=2.8e+02 Score=25.87 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=55.6
Q ss_pred cEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCC-------C--------------CC--cchhHHHHHHHHHHHHHH
Q 022772 136 DLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKH-------G--------------PA--IAGYESALNKFFENVLQA 192 (292)
Q Consensus 136 ~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~-------~--------------~~--~s~~~~~~~~Ff~~v~~~ 192 (292)
.+++|-+.....+++++.+........+. +++.. . .+ .......+..|++++++.
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~--~G~~~l~~~i~~~~~i~~~~Ae~~k~~~~l~~~~~~~~l~~~~~~l~~E 258 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIP--IGGNDLTEAIARELGIDFEEAEELKRSGGLPEEYDQDALRPFLEELARE 258 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES---SHHHHHHHHHHHTT--HHHHHHHHHHT------HHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEe--eCHHHHHHHHHHhcCCCHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Confidence 57888889999999999888766555442 22210 0 00 000123466788888888
Q ss_pred HHhccCc-------CCccEEEEECCcccHHHHHHHHHHHH
Q 022772 193 FLKHVDF-------NVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 193 l~~~~~~-------~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
+.+.++| ..++.|+++|.|--=..+.+||.++.
T Consensus 259 I~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l 298 (340)
T PF11104_consen 259 IRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL 298 (340)
T ss_dssp HHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH
Confidence 8777642 36899999999987788888887774
No 28
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=27.33 E-value=54 Score=25.48 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.0
Q ss_pred EEEeecCCCeEEEEEEEeeccc
Q 022772 71 VVDYDKEGSVLRIRGKNILENE 92 (292)
Q Consensus 71 ~v~f~~~~~~Lri~G~i~~~~e 92 (292)
.|.||+.+++|+|+|.-..++.
T Consensus 2 ~V~Fd~~~g~l~i~GeSypEn~ 23 (99)
T PF09345_consen 2 EVDFDFDTGRLEISGESYPENA 23 (99)
T ss_pred eEEEEccCCEEEEecccCccCH
Confidence 4889999999999998876664
No 29
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=26.31 E-value=1.6e+02 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 183 NKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 183 ~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
..+++++.+++.+.-.-+++++|||.|.|
T Consensus 29 ~~~~~~l~~~l~~~~~d~~vr~vVl~g~g 57 (260)
T PRK07511 29 PDMYAAGIEALNTAERDPSIRAVVLTGAG 57 (260)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEECCC
Confidence 45666666677665545689999999977
No 30
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=25.15 E-value=1.4e+02 Score=25.34 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=23.9
Q ss_pred EEEEEeecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEE
Q 022772 69 VEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVL 112 (292)
Q Consensus 69 Ve~v~f~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i 112 (292)
...++|....+.++|+|.++ -+++++|+++|++
T Consensus 32 ~S~l~~~~d~~~i~vsGn~t-----------~~wdi~P~DrI~~ 64 (164)
T smart00675 32 ISNLVVDMDPDGLHISGNIT-----------VIWDVQPTDRISA 64 (164)
T ss_pred hhheEEEEcCCeEEEeeeEE-----------EEEecCCCCeEEE
Confidence 34556666778899999875 3677888888775
No 31
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.05 E-value=2.8e+02 Score=20.27 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhccCcCCccEEEEECCccc
Q 022772 183 NKFFENVLQAFLKHVDFNVVRCAVIASPGFT 213 (292)
Q Consensus 183 ~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~ 213 (292)
..+++.+.+.+.++ ++.+|.|+.||.+
T Consensus 37 ~~~~~~l~~~i~~~----~~~~i~Ig~pg~v 63 (99)
T smart00732 37 EADAARLKKLIKKY----QPDLIVIGLPLNM 63 (99)
T ss_pred chHHHHHHHHHHHh----CCCEEEEeCCcCC
Confidence 34555555555543 5889999999987
No 32
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=23.75 E-value=2.1e+02 Score=28.86 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=40.7
Q ss_pred eEEEEEEEEEEEEEEeecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEE
Q 022772 59 ERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRK 114 (292)
Q Consensus 59 ~r~~~~L~i~Ve~v~f~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K 114 (292)
+-|.+...-+|++++|++.++.-++++..+..+ |..++++|.+++=+-+.-
T Consensus 220 ~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~-----g~~~~i~l~~~DlV~vT~ 270 (500)
T PF06100_consen 220 QGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD-----GKEETIDLGPDDLVFVTN 270 (500)
T ss_pred CCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC-----CCeeEEEeCCCCEEEEEC
Confidence 456778888999999999988888888776643 777889999888766544
No 33
>PRK09698 D-allose kinase; Provisional
Probab=23.23 E-value=2.7e+02 Score=25.27 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccHH-HHHHHHHHHHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKD-QFHRHLLLEAE 226 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd-~f~~yl~~~~~ 226 (292)
.+++|.+.++..+...++.-++..|||+|...-.. .|.+++.+...
T Consensus 216 ~~~~~~~~la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~ 262 (302)
T PRK09698 216 FIQSLLENLARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQ 262 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHH
Confidence 45666666777777776666899999999754332 34555555543
No 34
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=23.06 E-value=2.2e+02 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.+++++.+++.+.-+-+++++|||.|.|
T Consensus 30 ~~~~~l~~~l~~~~~d~~vr~vvl~g~g 57 (249)
T PRK05870 30 EMSAQLRAAVAAAEADPDVHALVVTGAG 57 (249)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 3444455555444333679999999988
No 35
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=23.04 E-value=2.2e+02 Score=25.52 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 183 NKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 183 ~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
..++.++.+.+.+.-.-..+++|||.|.|
T Consensus 32 ~~~~~el~~~l~~~~~d~~vr~vVltg~g 60 (260)
T PRK07827 32 ARLVAQLHDGLRAAAADPAVRAVVLTHTG 60 (260)
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Confidence 45555666666554433578999999998
No 36
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=23.00 E-value=1.9e+02 Score=25.83 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.++.++.+++.+.-.-+++++|||.|.|
T Consensus 30 ~~~~~l~~~l~~~~~d~~v~~vVl~g~g 57 (260)
T PRK05980 30 ALIDRLLARLDAIEVDESVRAVILTGAG 57 (260)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence 4455555555443333579999999976
No 37
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.84 E-value=1.6e+02 Score=29.01 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=33.5
Q ss_pred CccEEEEECCcccHHHHHH-------HHHHHHHhcccccc----------cccCCcEEEEecCCCccchHHHHhcC
Q 022772 201 VVRCAVIASPGFTKDQFHR-------HLLLEAERRQLRPI----------IENKSRIILVHTSSGYKHSLREVLDA 259 (292)
Q Consensus 201 ~vk~IiIaGPGf~kd~f~~-------yl~~~~~~~~~~~~----------~~~~~ki~~~~tS~~~~~gl~EvL~~ 259 (292)
+.+ ++||||.|-.-.|-. ++.++ ++.+.+ -.=++++.++.++.. -.|++++|..
T Consensus 76 ~pD-v~iaGPaFNagrYG~acg~va~aV~e~---~~IP~vt~My~ENpgvd~yk~~vyIv~t~~s-a~gmr~al~~ 146 (431)
T TIGR01918 76 EPD-IFIAGPAFNAGRYGVACGEICKVVQDK---LNVPAVTSMYVENPGVDMFKKDVYVMITGDS-AAGMRKDLPA 146 (431)
T ss_pred CCC-EEEEcCccCCccHHHHHHHHHHHHHHh---hCCCeEEEecccChHHHHHhhCcEEEECCcc-hhhHHHHHHH
Confidence 344 889999997777643 23322 222222 112456778888877 7789988864
No 38
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=22.83 E-value=4.2e+02 Score=23.88 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=22.3
Q ss_pred EEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 164 ETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 164 ~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
+-+-|.+++.=. ..+++++.+++.+.-.-+++++|||.|.|
T Consensus 25 tlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 65 (269)
T PRK06127 25 TFNNPARHNAMS-------LDMWEALPQALAAAEDDDAIRVVVLTGAG 65 (269)
T ss_pred EecCCCccCCCC-------HHHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 344577643322 23334444444433333579999999976
No 39
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=22.81 E-value=1.2e+02 Score=20.95 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCceEEEeccCCchhhhHhhhcCCCCEEEEEe
Q 022772 11 NGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVT 43 (292)
Q Consensus 11 ~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T 43 (292)
++.|.+.+..-+ ++.-..++.+.+||.|...-
T Consensus 24 D~tg~i~~~~~~-~~~~~~~~~l~~g~~v~v~G 55 (75)
T PF01336_consen 24 DGTGSIQVVFFN-EEYERFREKLKEGDIVRVRG 55 (75)
T ss_dssp ETTEEEEEEEET-HHHHHHHHTS-TTSEEEEEE
T ss_pred ECCccEEEEEcc-HHhhHHhhcCCCCeEEEEEE
Confidence 677888888777 77888888999999999884
No 40
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=22.46 E-value=2e+02 Score=26.06 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCC---------------------CCC-cchhHHHHHHHHHHHHHHHH
Q 022772 137 LAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKH---------------------GPA-IAGYESALNKFFENVLQAFL 194 (292)
Q Consensus 137 ~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~---------------------~~~-~s~~~~~~~~Ff~~v~~~l~ 194 (292)
.+++-|..|...++++.+..+... ...++.+.+ ... .......++.+++++.+.+.
T Consensus 137 ~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~i~~~eAE~lK~~~~~~~~~~~ii~~~~~~i~~~i~ 214 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYGISFEEAEQYKRDPKHHKEIFPVVKPVVEKMASIVA 214 (267)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888876654432 222222210 000 00011234567777787777
Q ss_pred hccCcCCccEEEEECCcccHHHHHHHHHHHH
Q 022772 195 KHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 195 ~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
+.++...+..|+++|-|--=..+.+++.+..
T Consensus 215 ~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 215 RHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred HHHhcCCCCEEEEECCcccchhHHHHHHHHh
Confidence 7776667888999987765555666666653
No 41
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=22.15 E-value=2.3e+02 Score=25.28 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=23.5
Q ss_pred EEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 163 IETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 163 i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
++-+=|.|++.=. ..+++++.+++.+.-.-+++++|||.|.|
T Consensus 13 itlnrp~~~Nal~-------~~~~~~l~~a~~~~~~d~~vr~vVl~g~g 54 (248)
T PRK06072 13 VTMSRPDKLNALN-------LEMRNEFISKLKQINADPKIRVVIVTGEG 54 (248)
T ss_pred EEECCcccccCCC-------HHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 3445576643322 23444444444443323579999999988
No 42
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=22.00 E-value=4.4e+02 Score=21.49 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=40.6
Q ss_pred EEeecCCCeEEEEEEEeecc-cccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEE
Q 022772 72 VDYDKEGSVLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHIL 150 (292)
Q Consensus 72 v~f~~~~~~Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ 150 (292)
..-+..+.-+|++|++.-.+ -.++-=. +.+ .-.|+++...+.++.+.+.-+|.|++.+|
T Consensus 62 cg~~kdg~~vrlrg~a~f~~nielkk~a-----------le~---------yP~Lkeiy~tddnpifevfyld~~e~~m~ 121 (132)
T COG5015 62 CGMDKDGVMVRLRGRAEFVENIELKKLA-----------LEI---------YPVLKEIYPTDDNPIFEVFYLDSGEGEMY 121 (132)
T ss_pred EEecCCceEEEEeeeEEeccchHHHHHH-----------hhh---------chhhHhhccCCCCCEEEEEEEeeccEEEE
Confidence 33455678899999987433 2222100 000 12477777777777888888899999999
Q ss_pred EEcc
Q 022772 151 LVGR 154 (292)
Q Consensus 151 ll~~ 154 (292)
-+.+
T Consensus 122 df~g 125 (132)
T COG5015 122 DFSG 125 (132)
T ss_pred EecC
Confidence 8653
No 43
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=21.94 E-value=2.1e+02 Score=22.64 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=25.7
Q ss_pred EEEEEEEEeecCCCeEEEEEEEeecccccccCcEEEEEEcc
Q 022772 66 EIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIEL 106 (292)
Q Consensus 66 ~i~Ve~v~f~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~ 106 (292)
.|.|+..++...++.|.|.=.+--.+ +++++-|++.+.|
T Consensus 29 ~i~v~~~~~~~~gd~L~V~m~idl~~--l~v~s~~~l~ltP 67 (115)
T PF12984_consen 29 QIKVTNVSVEKQGDSLHVDMDIDLSG--LKVKSNRSLILTP 67 (115)
T ss_pred cEEEEeeEEEEECCEEEEEEEEEecc--cccCCCCEEEEEe
Confidence 46677777777788888887775433 3556666666554
No 44
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.51 E-value=71 Score=30.58 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=30.8
Q ss_pred CccEEEEECCcccHHHHHH-------HHHHHHHhcccccc----------cccCCcEEEEecCCCccchHHHHhcC
Q 022772 201 VVRCAVIASPGFTKDQFHR-------HLLLEAERRQLRPI----------IENKSRIILVHTSSGYKHSLREVLDA 259 (292)
Q Consensus 201 ~vk~IiIaGPGf~kd~f~~-------yl~~~~~~~~~~~~----------~~~~~ki~~~~tS~~~~~gl~EvL~~ 259 (292)
+.+ ++||||.|=.-.|-. +++++ ++.+.+ -.=++.+.++.++.+ -.|+++.|..
T Consensus 80 ~pD-~viaGPaFnagrYG~acg~v~~aV~e~---~~IP~vtaM~~ENpgv~~yk~~~~Ivkt~~~-a~gm~~al~~ 150 (349)
T PF07355_consen 80 KPD-VVIAGPAFNAGRYGVACGEVAKAVQEK---LGIPVVTAMYEENPGVEMYKKDVYIVKTKKS-AAGMRDALPA 150 (349)
T ss_pred CCC-EEEEcCCcCCchHHHHHHHHHHHHHHh---hCCCEEEEecccChhHHHHhhccEEEECCCc-cccHHHHHHH
Confidence 344 889999997777643 22222 222222 111345677777444 6688887764
No 45
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=21.49 E-value=2.2e+02 Score=25.45 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.+++++.+++.+.-.-+++++|||.|.|
T Consensus 31 ~~~~~l~~~l~~~~~d~~vr~vVltg~g 58 (262)
T PRK05995 31 TVIAELTAAFRALDADDSVRAVVLAGAG 58 (262)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4445555555443333579999999988
No 46
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=20.44 E-value=2.4e+02 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.+++++.+++.+.-.-+++++|||.|.|
T Consensus 35 ~~~~~l~~al~~~~~d~~vrvvVltg~g 62 (275)
T PLN02664 35 DFFTEFPKALSSLDQNPNVSVIILSGAG 62 (275)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4444555555443333579999999988
No 47
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=20.43 E-value=4.8e+02 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.++.++.+++.+. + +++++|||.|.|
T Consensus 29 ~~~~~l~~al~~~-~-~~vr~vvltg~g 54 (255)
T PRK08150 29 GLIAALRAAFARL-P-EGVRAVVLHGEG 54 (255)
T ss_pred HHHHHHHHHHHHh-h-cCCeEEEEECCC
Confidence 3444444454432 3 689999999988
No 48
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.36 E-value=4e+02 Score=22.45 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhccCcCCccEEEEEC-CcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHHHHhcCh
Q 022772 183 NKFFENVLQAFLKHVDFNVVRCAVIAS-PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAP 260 (292)
Q Consensus 183 ~~Ff~~v~~~l~~~~~~~~vk~IiIaG-PGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~EvL~~~ 260 (292)
.+.++.|-+.+. +++.||+|. |+---+....++.+..... ..++.-+--|+-...+|++++++|
T Consensus 106 ~~~~~~l~~l~~------~~~~iiiatD~drEGe~I~~~i~~~~~~~--------~~~v~R~~fs~it~~~I~~a~~n~ 170 (170)
T cd03361 106 LETLEALRELAL------EVDEVLIATDPDTEGEKIAWDVYLALRPY--------NKNIKRAEFHEVTRRAILEALRNP 170 (170)
T ss_pred HHHHHHHHHHHh------hCCEEEEecCCCccHHHHHHHHHHHhccC--------CCCeEEEEEecCCHHHHHHHHhCc
Confidence 344544444442 466788888 8766666666666554211 235666677777889999998875
No 49
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.30 E-value=2.1e+02 Score=26.54 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHH
Q 022772 175 IAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHR 219 (292)
Q Consensus 175 ~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~ 219 (292)
.|+| |++.||+.+-..+..+ .....|+..||++..+|..
T Consensus 165 ASK~--Al~~f~etLR~El~~~----~~~i~i~V~PG~V~Te~~~ 203 (282)
T KOG1205|consen 165 ASKH--ALEGFFETLRQELIPL----GTIIIILVSPGPIETEFTG 203 (282)
T ss_pred hHHH--HHHHHHHHHHHHhhcc----CceEEEEEecCceeecccc
Confidence 3455 9999999877776653 2222236999999999754
No 50
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.25 E-value=2.4e+02 Score=25.74 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhccCcCCccEEEEEC--CcccHHHHHHHHHHHHH
Q 022772 182 LNKFFENVLQAFLKHVDFNVVRCAVIAS--PGFTKDQFHRHLLLEAE 226 (292)
Q Consensus 182 ~~~Ff~~v~~~l~~~~~~~~vk~IiIaG--PGf~kd~f~~yl~~~~~ 226 (292)
++++.+.++..+....+.-++..|||+| +.-..+.|.+.+.....
T Consensus 228 ~~~~~~~la~~ianl~~~~~P~~IvigG~g~~~~~~~~~~~l~~~~~ 274 (314)
T COG1940 228 IERAADYLARGLANLINLLDPEVIVIGGGGVSALGDLLLPRLRKLLA 274 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECcccccchhHHHHHHHHHHH
Confidence 4556666666666666666788899987 66666788877776654
No 51
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=20.14 E-value=2.5e+02 Score=25.05 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 183 NKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 183 ~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
..+++++.+++.+.-.-.++++|||.|.|
T Consensus 25 ~~~~~~l~~~l~~~~~d~~vrvvvl~g~g 53 (255)
T PRK06563 25 SAMLDDLALALGEYEADDELRVAVLFAHG 53 (255)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 34555555555544333578999999988
Done!