Query 022772
Match_columns 292
No_of_seqs 132 out of 538
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.8E-83 6.1E-88 612.8 17.6 290 1-290 1-290 (390)
2 2vgn_A DOM34; translation term 100.0 5.9E-77 2E-81 567.7 32.7 287 1-290 1-296 (386)
3 3j15_A Protein pelota; ribosom 100.0 3.3E-78 1.1E-82 571.0 13.3 277 1-290 1-279 (357)
4 3oby_A Protein pelota homolog; 100.0 3.9E-75 1.3E-79 547.8 25.7 263 1-288 1-263 (352)
5 3obw_A Protein pelota homolog; 100.0 1.3E-73 4.4E-78 539.9 27.8 263 1-290 21-284 (364)
6 3agj_B Protein pelota homolog; 100.0 1.6E-70 5.6E-75 518.9 33.4 266 1-289 3-270 (358)
7 2qi2_A Pelota, cell division p 100.0 1.2E-70 4.2E-75 517.1 19.9 263 1-288 1-264 (347)
8 3e20_C Eukaryotic peptide chai 100.0 2.8E-41 9.5E-46 326.2 -9.1 225 41-289 64-303 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 7.8E-40 2.7E-44 316.8 -8.9 246 28-289 34-298 (437)
10 3agk_A Peptide chain release f 100.0 7.3E-33 2.5E-37 263.0 11.4 194 75-289 88-297 (373)
11 3gdz_A Arginyl-tRNA synthetase 67.2 3.9 0.00013 31.1 3.1 28 187-214 59-87 (109)
12 2xsk_A CSGC; chaperone; 1.70A 43.4 64 0.0022 24.3 6.1 43 12-54 2-44 (110)
13 2pk8_A Uncharacterized protein 41.4 92 0.0031 23.1 6.6 39 181-225 14-53 (103)
14 4fzw_C 1,2-epoxyphenylacetyl-C 37.1 73 0.0025 27.7 6.7 55 136-211 15-69 (274)
15 3mcp_A Glucokinase; structural 33.1 78 0.0027 28.9 6.4 77 181-261 239-319 (366)
16 3u61_B DNA polymerase accessor 31.6 69 0.0024 27.8 5.7 46 202-258 48-94 (324)
17 4htl_A Beta-glucoside kinase; 29.8 70 0.0024 27.8 5.3 66 182-254 218-283 (297)
18 3r8e_A Hypothetical sugar kina 29.0 1E+02 0.0035 27.0 6.4 70 181-253 240-310 (321)
19 3lao_A Enoyl-COA hydratase/iso 25.3 1.7E+02 0.0059 24.9 7.0 28 184-211 39-66 (258)
20 4db3_A Glcnac kinase, N-acetyl 24.4 1.2E+02 0.0042 26.7 6.0 69 182-254 250-318 (327)
21 2llw_A Heat shock protein STI1 24.0 62 0.0021 22.5 3.1 27 250-276 10-36 (71)
22 4dey_A Voltage-dependent L-typ 23.9 1.5E+02 0.0051 26.9 6.5 76 200-286 140-227 (337)
23 2gup_A ROK family protein; sug 22.1 1E+02 0.0035 26.4 4.9 44 182-225 208-251 (292)
24 3htv_A D-allose kinase, alloki 22.1 1.3E+02 0.0044 26.4 5.6 67 181-253 219-290 (310)
25 3vgl_A Glucokinase; ROK family 22.0 2.2E+02 0.0074 24.8 7.1 71 181-254 232-304 (321)
26 1oa8_A Ataxin-1; RNA binding, 21.7 2.8E+02 0.0096 21.7 6.8 85 13-130 24-110 (133)
27 2a6a_A Hypothetical protein TM 20.4 3.7E+02 0.013 22.4 8.3 33 178-212 45-78 (218)
28 3tvt_A Disks large 1 tumor sup 20.1 63 0.0022 28.6 3.1 24 201-226 99-122 (292)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-83 Score=612.83 Aligned_cols=290 Identities=37% Similarity=0.688 Sum_probs=245.5
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
|||+++++.++++|.|+|+||++||||||||||++||.|+|+|+|||++++++|+++++|++++|+|+||+++|||++++
T Consensus 1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~ 80 (390)
T 3mca_B 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ 80 (390)
T ss_dssp -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence 99999999999999999999999999999999999999999999999999888988999999999999999999999999
Q ss_pred EEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEE
Q 022772 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (292)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (292)
|||+|+|+.+|+++++|+|||++|+||+||+++|+||++|++++|++|++++.++++++|+||+|.|+||+|+++++.++
T Consensus 81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~ 160 (390)
T 3mca_B 81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR 160 (390)
T ss_dssp EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcE
Q 022772 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (292)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki 240 (292)
+++++++||||++|++++++++++||++|++++.+++++.+++|||||||||+|++|++||.+++.+.+++.|++++++|
T Consensus 161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~ 240 (390)
T 3mca_B 161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240 (390)
T ss_dssp EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence 99999999999887778999999999999999999999999999999999999999999999999888889888888899
Q ss_pred EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 241 ~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
+++|+||||++||+|+|++|+++++|+++++++|.++|++||++|++|+.
T Consensus 241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g 290 (390)
T 3mca_B 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDR 290 (390)
T ss_dssp EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999998753
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=5.9e-77 Score=567.68 Aligned_cols=287 Identities=24% Similarity=0.453 Sum_probs=256.7
Q ss_pred Ceeeeee---cccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecC
Q 022772 1 MKILRRN---LVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKE 77 (292)
Q Consensus 1 Mki~~~~---~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~ 77 (292)
|||++++ +++ ++|.|+|+||++||||||||||++||.|+|+|+|+|++ +++|+ +++|++++|+|+||+++|||+
T Consensus 1 Mki~~~~~~~~~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~ 77 (386)
T 2vgn_A 1 MKVISLKKDSFNK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDMK 77 (386)
T ss_dssp CEEEEEEECSSCT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETT
T ss_pred CeeeeeccccccC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecCC
Confidence 9999999 777 89999999999999999999999999999999999998 67778 899999999999999999999
Q ss_pred CCeEEEEEEEeecccc-----cccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEE
Q 022772 78 GSVLRIRGKNILENEH-----VKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLV 152 (292)
Q Consensus 78 ~~~Lri~G~i~~~~e~-----v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll 152 (292)
+++|||+|+|+++|++ |++|+|||++|+||+||+++|++|++|++++|++|++++.++.+++|+||+|.|+||++
T Consensus 78 ~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l 157 (386)
T 2vgn_A 78 DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLV 157 (386)
T ss_dssp TTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEE
Confidence 9999999999999998 99999999999999999999999999999999999998888899999999999999999
Q ss_pred ccceEEEEEEEEEecCCCCCCCcc-hhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccc
Q 022772 153 GRSMTITRSRIETSIPRKHGPAIA-GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR 231 (292)
Q Consensus 153 ~~~~~~~~~~i~~~ip~K~~~~~s-~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~ 231 (292)
+++++.+++++++++||||+++++ ++++++++||++|++++.+++++.+++|||||||||+|++|++|+.+++++.+++
T Consensus 158 ~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~ 237 (386)
T 2vgn_A 158 TSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237 (386)
T ss_dssp CSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCH
T ss_pred ECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999887644 4899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcEEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 232 PIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 232 ~~~~~~~ki~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
.|+.|+++|+++|+||++++|++|+|++|+++++|+|+++++|.++|++||++|++++.
T Consensus 238 ~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~ 296 (386)
T 2vgn_A 238 KILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDD 296 (386)
T ss_dssp HHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCS
T ss_pred hhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999889999999999999999999999999999999999999999999999998753
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-78 Score=571.01 Aligned_cols=277 Identities=25% Similarity=0.408 Sum_probs=263.3
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCC-CCccceEEEEEEEEEEEEEEeecCCC
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMAS-GSRDAERVKLKLEIKVEVVDYDKEGS 79 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~v~f~~~~~ 79 (292)
|||++++ +++|.|+|+||++||||||||||++||.|+|+|+|||++++++ ++++++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~---~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~ 77 (357)
T 3j15_A 1 MEILEEK---PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFAN 77 (357)
T ss_dssp CCCEECS---TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTT
T ss_pred CceeEec---CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCC
Confidence 9999999 7899999999999999999999999999999999999988776 47789999999999999999999999
Q ss_pred eEEEEEEEeecc-cccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEE
Q 022772 80 VLRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 158 (292)
Q Consensus 80 ~Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 158 (292)
+|||+|+|+++| ++|++|+|||++|+||+||+++|++|++|++++|++|++++.++.+++|+||+|+|+||++++++++
T Consensus 78 ~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~ 157 (357)
T 3j15_A 78 QVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVE 157 (357)
T ss_dssp EEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEE
Confidence 999999999999 8999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCC
Q 022772 159 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 238 (292)
Q Consensus 159 ~~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ 238 (292)
+++++++++||||+ ++.+++++++||++|++++.+++++.+++|||||||||+|++|++||.++++++ ++
T Consensus 158 ~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~l--------~~ 227 (357)
T 3j15_A 158 ILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPEL--------AK 227 (357)
T ss_dssp EEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCCS--------SC
T ss_pred EEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHHh--------hC
Confidence 99999999999975 456889999999999999999999999999999999999999999999875332 56
Q ss_pred cEEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 239 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 239 ki~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
+|+++|+||+|++||+|+|++|+++++|+|+++++|.++|++||++|++|+.
T Consensus 228 kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g 279 (357)
T 3j15_A 228 KVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNG 279 (357)
T ss_dssp EECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999999999999999999999998753
No 4
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.9e-75 Score=547.77 Aligned_cols=263 Identities=23% Similarity=0.378 Sum_probs=227.2
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
|||++++ .++++|.|+|+||++||||||||||++||.|+|+| |||+.++++++.+++|++++|+|+||+++|||++++
T Consensus 1 Mki~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~ 78 (352)
T 3oby_A 1 MQIVEEN-LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANR 78 (352)
T ss_dssp CEEEEEC-CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSSC
T ss_pred Cceeeec-cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999999 78999999999999999999999999999999999 999998888744559999999999999999999999
Q ss_pred EEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEE
Q 022772 81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR 160 (292)
Q Consensus 81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~ 160 (292)
|||+|+|+++|++ |+|||++|+||+||+++| ||++|++++|++|++++.++.+++|+||+|+|+||+|++++++++
T Consensus 79 Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~ 154 (352)
T 3oby_A 79 LRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEI 154 (352)
T ss_dssp EEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEE
Confidence 9999999999988 999999999999999999 999999999999999888899999999999999999999999999
Q ss_pred EEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcE
Q 022772 161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240 (292)
Q Consensus 161 ~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki 240 (292)
+++++++|||+. +.+ ++||++|++++.++ +++|||||||||+|++|++||.++++++ +++|
T Consensus 155 ~~i~~~ipkK~g---~~r----~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~l--------~~kv 215 (352)
T 3oby_A 155 FEERMGYGKGMG---DSR----KEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPEM--------AKNA 215 (352)
T ss_dssp EEEEC-----------CC----CCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHHH--------HTTE
T ss_pred EEEeccCCCccc---hhH----HHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHHh--------hCcE
Confidence 999999999863 223 89999999999998 7999999999999999999999975443 4688
Q ss_pred EEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcc
Q 022772 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNV 288 (292)
Q Consensus 241 ~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~ 288 (292)
+++|+||||++||+|+|++|+++++|+|+++++|.++|++||++|++|
T Consensus 216 v~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d 263 (352)
T 3oby_A 216 VVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG 263 (352)
T ss_dssp EECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999986
No 5
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-73 Score=539.93 Aligned_cols=263 Identities=20% Similarity=0.283 Sum_probs=227.5
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
|||++++ .++|.|+|+||++||||||||||++||.|+|+|+|+|+. |+ +++|++++|+|+||+++|||++++
T Consensus 21 Mki~~~~---~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~Ve~ief~~~~~~ 92 (364)
T 3obw_A 21 MRILEFD---EKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILKVDYTEFQEFTNR 92 (364)
T ss_dssp ------C---CCCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTTE
T ss_pred cEEEEec---CCCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999988 689999999999999999999999999999999999973 33 579999999999999999999999
Q ss_pred EEEEEEEeecc-cccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEE
Q 022772 81 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 159 (292)
Q Consensus 81 Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 159 (292)
|||+|+|+.++ +++++|+|||++|+||+||+++|++|++|++++|++|++. ++.+++|+||+|+|+||+|+++++++
T Consensus 93 Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d~g~A~i~~l~~~~~~~ 170 (364)
T 3obw_A 93 LRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVDFDEYLIAIPFEQGIKI 170 (364)
T ss_dssp EEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEEEEECSSCEEC
T ss_pred EEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEECCcEEEEEEeCCEEEE
Confidence 99999999977 8999999999999999999999999999999999999985 56999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCc
Q 022772 160 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 239 (292)
Q Consensus 160 ~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~k 239 (292)
++++++++|||++ +++++||++|++++.+++++.+++|||||||||+|++|++||.++.. +.+
T Consensus 171 ~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~----------~~~ 233 (364)
T 3obw_A 171 LSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK----------NKK 233 (364)
T ss_dssp CCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC----------CSE
T ss_pred EEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh----------cCe
Confidence 9999999999963 57799999999999999999999999999999999999999987531 347
Q ss_pred EEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcccC
Q 022772 240 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVRF 290 (292)
Q Consensus 240 i~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~~ 290 (292)
+.++|+||+|++||+|+|++|+++++|+++++++|.++|++||++|++|+.
T Consensus 234 i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g 284 (364)
T 3obw_A 234 IYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPE 284 (364)
T ss_dssp EEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred EEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 889999999999999999999999999999999999999999999998753
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=1.6e-70 Score=518.94 Aligned_cols=266 Identities=21% Similarity=0.319 Sum_probs=250.8
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCe
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV 80 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~ 80 (292)
|||+++++. +|.|+|+||++||||||||||++||.|+|+|+|||++ |+++++|++++|+|+||+++|||+++.
T Consensus 3 Mki~~~~~~---~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~ 75 (358)
T 3agj_B 3 MRVEVLDNK---RRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTGK 75 (358)
T ss_dssp CEEEECSSS---SCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSCE
T ss_pred CEEEEeecc---CCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCCE
Confidence 999999953 8999999999999999999999999999999999976 666789999999999999999999999
Q ss_pred EEEEEEEeecc-cccccCcEEEEEEccCCeeEEEEcc-CChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEE
Q 022772 81 LRIRGKNILEN-EHVKIGAFHTLEIELHRAFVLRKDL-WDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTI 158 (292)
Q Consensus 81 Lri~G~i~~~~-e~v~~G~~HTl~i~~~~~i~i~K~~-w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~ 158 (292)
|||+|+|+.+| ++|++|+|||++|+||+||+++|+| |++|++++|++| +.++.+++|+||+|.|+||+++++++.
T Consensus 76 Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~i~~l~~~~~~ 152 (358)
T 3agj_B 76 LRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFALAVLAGHGMK 152 (358)
T ss_dssp EEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEEEEEEESSCEE
T ss_pred EEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 99999999999 8999999999999999999999985 999999999999 446699999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCC
Q 022772 159 TRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 238 (292)
Q Consensus 159 ~~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ 238 (292)
+++++++++|||| | +++++++++||++|++++.+++++.++++||||||||+|++|.+||..++.+ .
T Consensus 153 ~~~~i~~~vpkK~--g-~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~----------~ 219 (358)
T 3agj_B 153 ILEDTSARLPGKD--D-PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPS----------L 219 (358)
T ss_dssp EEEEEECCCCCTT--S-TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTT----------S
T ss_pred EEEEEEecCCCCC--c-hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhh----------c
Confidence 9999999999998 3 4588999999999999999999988999999999999999999999988631 2
Q ss_pred cEEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhccc
Q 022772 239 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 239 ki~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
++.++++|+++++|++|+|++++++++|+++++++|.++|++|++++++++
T Consensus 220 ~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~ 270 (358)
T 3agj_B 220 KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSR 270 (358)
T ss_dssp EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCG
T ss_pred eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 678999999999999999999999999999999999999999999999874
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=1.2e-70 Score=517.10 Aligned_cols=263 Identities=22% Similarity=0.393 Sum_probs=225.9
Q ss_pred CeeeeeecccCCCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEecc-CCCCccceEEEEEEEEEEEEEEeecCCC
Q 022772 1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQM-ASGSRDAERVKLKLEIKVEVVDYDKEGS 79 (292)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~v~f~~~~~ 79 (292)
|||+++++. +|.|+|+||++||||||||||++||.|+|+|+|+|++++ .+|+++++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~~~---~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~ 77 (347)
T 2qi2_A 1 MRILEEDLK---NSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDN 77 (347)
T ss_dssp CEEEEEETT---TTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEE
T ss_pred CceeEeecc---CcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCCC
Confidence 999999953 899999999999999999999999999999999999854 5667789999999999999999999999
Q ss_pred eEEEEEEEeecccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEE
Q 022772 80 VLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTIT 159 (292)
Q Consensus 80 ~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~ 159 (292)
+||++|.++.+|++ ++|+|||++++||+||+++| ||++|++++|++|++++.++.+++|+||+|.|+||+++++++++
T Consensus 78 ~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~ 155 (347)
T 2qi2_A 78 RLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQ 155 (347)
T ss_dssp EEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEE
T ss_pred EEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEE
Confidence 99999999999998 78999999999999999999 99999999999999976667999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCc
Q 022772 160 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 239 (292)
Q Consensus 160 ~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~k 239 (292)
++++++++|||++ +|++.. ++||++|++++.++ | +|||||||||+|++|.+|+.+++ +++
T Consensus 156 ~~~i~~~~~Kk~~--~s~f~r--~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~-----------~~~ 215 (347)
T 2qi2_A 156 VGTVYSGRSGKYA--EGNYSE--ASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRG-----------VNV 215 (347)
T ss_dssp EEEEECCHHHHC------CCH--HHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTS-----------CCC
T ss_pred EEEEeecCCCccc--cchhhH--HHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhh-----------cce
Confidence 9999999888865 334433 89999999999998 3 99999999999999999998875 246
Q ss_pred EEEEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhcc
Q 022772 240 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNV 288 (292)
Q Consensus 240 i~~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~ 288 (292)
++++|+||++++|++|+|++|+++++|+|+++++|.++|++||++|+++
T Consensus 216 i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d 264 (347)
T 2qi2_A 216 IGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD 264 (347)
T ss_dssp SCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7789999999999999999999999999999999999999999999987
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-41 Score=326.21 Aligned_cols=225 Identities=17% Similarity=0.225 Sum_probs=87.7
Q ss_pred EEeEE-EEEeccCCCCccceEEEEEEEEEEEEEEeecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEc-cCC
Q 022772 41 AVTVR-KVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWD 118 (292)
Q Consensus 41 a~T~R-kv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~w~ 118 (292)
|.|.| |+++++.+|+-++.+.+++|..+| |.++.++++|.|+.++ +.|+|||++|+||+||+++|+ ||+
T Consensus 64 asnIksk~~r~~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~ 134 (441)
T 3e20_C 64 ASNIKSRVNRLSVLSAITSTRERLKLYNKV------PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDN 134 (441)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEES
T ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhccC------CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCC
Confidence 44445 555556666556777778888777 9999999999998765 458999999999999999998 999
Q ss_pred hhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCC-cch------hHHHHHHHHHHHHH
Q 022772 119 SLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAG------YESALNKFFENVLQ 191 (292)
Q Consensus 119 ~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~-~s~------~~~~~~~Ff~~v~~ 191 (292)
+|++++|++|+++.. .+++|+||++.|.++.+.++++.+++++++++||||++| +|+ +++++++||++|++
T Consensus 135 ~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae 212 (441)
T 3e20_C 135 KFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAE 212 (441)
T ss_dssp SCCCTTGGGGC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 799999999999999999999999999999999997765 444 67889999999999
Q ss_pred HHHhccC---cCCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccCCcE-EEEecCCCccchHHHHhcChhHHHH
Q 022772 192 AFLKHVD---FNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNM 265 (292)
Q Consensus 192 ~l~~~~~---~~~vk~IiIaGPGf~kd~f~~--yl~~~~~~~~~~~~~~~~~ki-~~~~tS~~~~~gl~EvL~~~~v~~~ 265 (292)
++.++++ +.++++||||||||+|++|.+ |+... + ++++ .++|+||||++|++|+|++ ++++
T Consensus 213 ~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~---L--------~~kvv~~vdvs~gg~~Gl~EvL~~--~~~~ 279 (441)
T 3e20_C 213 GAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQR---L--------QSRIIKTVDVSYGGDAGFNQAIEL--AADT 279 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHH---H--------HhheEEEEECCCCCccCHHHHHHH--HHHH
Confidence 9999986 578999999999999999998 55332 1 2344 5789999999999999998 6899
Q ss_pred hhhhhHHHHHHHHHHHHHHHhccc
Q 022772 266 IKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 266 l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
|+++++++|.++|++|+++|++++
T Consensus 280 L~d~k~~~E~~lle~f~~~l~~d~ 303 (441)
T 3e20_C 280 LSNVKYVQEKKLIQRFFDEISLDS 303 (441)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999874
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=7.8e-40 Score=316.79 Aligned_cols=246 Identities=12% Similarity=0.134 Sum_probs=207.9
Q ss_pred hHhhhcCCCCEEEEEeEEEEEec--cCCCCccceEEEEEEEEEEEEEEe-----ecCCCeEEEEEEEeecccccccCcEE
Q 022772 28 FAYNLIAPGDSVMAVTVRKVLRQ--MASGSRDAERVKLKLEIKVEVVDY-----DKEGSVLRIRGKNILENEHVKIGAFH 100 (292)
Q Consensus 28 ~Lynli~~GD~V~a~T~Rkv~~~--~~~g~~~~~r~~~~L~i~Ve~v~f-----~~~~~~Lri~G~i~~~~e~v~~G~~H 100 (292)
.+|++|.|||.|.+.|.|++... +++-.++.+|..+.++|+++..+| .|.++.+.++|.++.++.+ ++||
T Consensus 34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g~---~~~~ 110 (437)
T 1dt9_A 34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGK---EKKV 110 (437)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGGC---EEEE
T ss_pred EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCCc---eEEE
Confidence 36889999999999999997532 122223678999999999999999 7788888888888765532 6899
Q ss_pred EEEEccCCee--EEEEccCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCCc-ch
Q 022772 101 TLEIELHRAF--VLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAI-AG 177 (292)
Q Consensus 101 Tl~i~~~~~i--~i~K~~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~-s~ 177 (292)
|++++|++|| +++| ||++|++++|++|+++ .+.+++|+||+|.|+||+++++++.++++++.++|+|+++|+ |+
T Consensus 111 tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~ 187 (437)
T 1dt9_A 111 NIDFEPFKPINTSLYL-CDNKFHTEALTALLSD--DSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSA 187 (437)
T ss_dssp EEEECCSCCTTCCEEE-EESSCCCHHHHHHCCC--CCEEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCS
T ss_pred EEEecCCCCCceeEEE-ecChhhHHHHHHHhcC--CCCEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcch
Confidence 9999999999 6777 9999999999999988 458999999999999999999999999999999999987654 43
Q ss_pred ------hHHHHHHHHHHHHHHHHhccCcC---CccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCC
Q 022772 178 ------YESALNKFFENVLQAFLKHVDFN---VVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSG 248 (292)
Q Consensus 178 ------~~~~~~~Ff~~v~~~l~~~~~~~---~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~ 248 (292)
++++.++||++|++++.+++++. ++++||||||||+|++|.+|... ++.|.. ..+.++|+|||
T Consensus 188 ~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l------~~~L~~--~vv~~v~~s~g 259 (437)
T 1dt9_A 188 LRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMF------DQRLQS--KVLKLVDISYG 259 (437)
T ss_dssp HHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSS------CTTTTT--TCCCEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhcc------ChhhHh--cEEEEEecCCC
Confidence 36677899999999999999653 79999999999999999874221 122221 13567899999
Q ss_pred ccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhccc
Q 022772 249 YKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 249 ~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
+++|++|+|++ ++++|+++++++|.++|++|++++++++
T Consensus 260 ~~~gl~E~l~~--~~~~l~~~k~~~e~~ll~~f~~~l~~d~ 298 (437)
T 1dt9_A 260 GENGFNQAIEL--STEVLSNVKFIQEKKLIGRYFDEISQDT 298 (437)
T ss_dssp TTHHHHHHHHH--HSSTTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998 5999999999999999999999999874
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.98 E-value=7.3e-33 Score=262.99 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=162.8
Q ss_pred ecCCCeEEEEEEEeecccccccCcEEEEEEccCCeeEEEEc-cCChhhHHHHHhhcCCCCCCcEEEEEEeCCeEEEEEEc
Q 022772 75 DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVG 153 (292)
Q Consensus 75 ~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~ 153 (292)
.|..+..-++|... ..|+|||++++|+.||+++|+ ||+.|++++|.++++.. +.+++|+||+|.|+||+++
T Consensus 88 ~~~~Gl~vf~~~~~------~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~--~~~~vvvvd~~~A~i~~~~ 159 (373)
T 3agk_A 88 TPPNGLVLFCGEDM------STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDN--NAIGIIIVERDQATIGLLK 159 (373)
T ss_dssp CCTTCEEEEEEC-----------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCS--CEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEecCC------CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCC--CCEEEEEEeCCcEEEEEEe
Confidence 45555555566442 579999999999999999998 89999999999999884 5999999999999999999
Q ss_pred cceEEEEEEEEEecCCCCCCCc-ch------hHHHHHHHHHHHHHHHHhcc---C-cCCccEEEEECCcccHHHHH--HH
Q 022772 154 RSMTITRSRIETSIPRKHGPAI-AG------YESALNKFFENVLQAFLKHV---D-FNVVRCAVIASPGFTKDQFH--RH 220 (292)
Q Consensus 154 ~~~~~~~~~i~~~ip~K~~~~~-s~------~~~~~~~Ff~~v~~~l~~~~---~-~~~vk~IiIaGPGf~kd~f~--~y 220 (292)
++++.++.+++.++|+||++++ |+ +++.+++||++|++++.+++ + +.++++||||||||+|++|. +|
T Consensus 160 ~~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~ 239 (373)
T 3agk_A 160 GARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNY 239 (373)
T ss_dssp TTEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSC
T ss_pred CcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhh
Confidence 9999999999999999987653 44 78889999999999999998 3 57899999999999999999 88
Q ss_pred HHHHHHhcccccccccCCcEE--EEecCCCccchHHHHhcChhHHHHhhhhhHHHHHHHHHHHHHHHhccc
Q 022772 221 LLLEAERRQLRPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNVR 289 (292)
Q Consensus 221 l~~~~~~~~~~~~~~~~~ki~--~~~tS~~~~~gl~EvL~~~~v~~~l~d~k~~~E~~~le~F~~~l~~~~ 289 (292)
|..++ +++++ ++|+||++++|++|+|++ +.++|+++++++|.++|++|++++++++
T Consensus 240 l~~~l-----------~~~vi~~~v~~s~~~~~g~~E~l~~--~~~~l~~~~~~~e~~~l~~f~~~l~~~~ 297 (373)
T 3agk_A 240 LDYRL-----------KKILAPELVDVAYQGLQGLKEAVMK--AEKVVEAQMYRDAVNAMEEFKLHLAKGT 297 (373)
T ss_dssp SCHHH-----------HTTBCSSCEECCCCHHHHHHHHHHH--CTTCGGGHHHHHHHHHHHHHHHHHHTTC
T ss_pred cChHh-----------hhCceeEEEccCCCccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88664 24666 799999999999999996 6999999999999999999999998764
No 11
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=67.23 E-value=3.9 Score=31.11 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=21.1
Q ss_pred HHHHHHHHhccCcC-CccEEEEECCcccH
Q 022772 187 ENVLQAFLKHVDFN-VVRCAVIASPGFTK 214 (292)
Q Consensus 187 ~~v~~~l~~~~~~~-~vk~IiIaGPGf~k 214 (292)
++|++.+.++++.. -+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 47888888877533 37889999999753
No 12
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=43.45 E-value=64 Score=24.29 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=21.2
Q ss_pred CCceEEEeccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCC
Q 022772 12 GPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASG 54 (292)
Q Consensus 12 ~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g 54 (292)
|++.|.+-....+|+|.+-=.+..-+-..|.-.=.+.+++..|
T Consensus 2 ~S~QitF~Ttqqg~~ytI~PqVTlt~aC~CqV~i~~~R~G~~G 44 (110)
T 2xsk_A 2 GSSQITFNTTQQGDMYTIIPEVTLTQSXLXRVQILSLREGSSG 44 (110)
T ss_dssp -CCEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEEEEECSSC
T ss_pred CcceEEEeccccCceEEEEEEEEeeccceeeEEEEEEEeccCC
Confidence 3556666666667777655444444444443333333334334
No 13
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=41.40 E-value=92 Score=23.10 Aligned_cols=39 Identities=8% Similarity=-0.094 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcc-CcCCccEEEEECCcccHHHHHHHHHHHH
Q 022772 181 ALNKFFENVLQAFLKHV-DFNVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~-~~~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
-+.+-...|-+++++.- +=.+++ ||++||. |++|+.++.
T Consensus 14 dlirIl~~ieekinELk~dG~ePD-IiL~G~e-----ayef~~e~v 53 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPD-IILFGRE-----AYNFLSNLL 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC-EEEECHH-----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCC-eEEEcHH-----HHHHHHHHH
Confidence 34555555555555542 222454 8899998 888888774
No 14
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=37.08 E-value=73 Score=27.70 Aligned_cols=55 Identities=11% Similarity=0.347 Sum_probs=31.7
Q ss_pred cEEEEEEeCCeEEEEEEccceEEEEEEEEEecCCCCCCCcchhHHHHHHHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 136 DLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 136 ~~~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
++..+=+++|.|.|.+ +=|.|++.=+ ...+.++.+++.+.-.-+.+++|||.|-|
T Consensus 15 e~il~~~~~gVa~itl--------------nRP~~~NAl~-------~~m~~~L~~al~~~~~d~~vr~vVltg~G 69 (274)
T 4fzw_C 15 EFILSHVEKGVMTLTL--------------NRPERLNSFN-------DEMHAQLAECLKQVERDDTIRCLLLTGAG 69 (274)
T ss_dssp -CEEEEEETTEEEEEE--------------CCTTTTSCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred ccEEEEEECCEEEEEE--------------cCcCccCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4455556777766655 4487643322 23444444454444333679999998766
No 15
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=33.08 E-value=78 Score=28.91 Aligned_cols=77 Identities=12% Similarity=-0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCccc-HHHHHHHHHHHHHhcccccccccCCcEE---EEecCCCccchHHHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQLRPIIENKSRII---LVHTSSGYKHSLREV 256 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~-kd~f~~yl~~~~~~~~~~~~~~~~~ki~---~~~tS~~~~~gl~Ev 256 (292)
.+++|.+.++..+....+.-++ .|||+|.-.- .+.|.+.+.+...+.......++. .+. +-+.+ ...+++.+
T Consensus 239 ~l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~~~~~~~~~-~i~~s~~~~~~--~~~~~~~f 314 (366)
T 3mcp_A 239 AFEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARF-GRLQKEVYDLD--EEKSFAGF 314 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHTTCC---------CCEEEETT--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhcchhccCCc-eEEEeecCCch--hHHHHHHH
Confidence 3556666666666666555578 8999987654 356777776665443222211111 111 12222 26688888
Q ss_pred hcChh
Q 022772 257 LDAPN 261 (292)
Q Consensus 257 L~~~~ 261 (292)
|.+|.
T Consensus 315 ~~~~~ 319 (366)
T 3mcp_A 315 ARGEA 319 (366)
T ss_dssp HHTTC
T ss_pred hhCch
Confidence 88774
No 16
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.62 E-value=69 Score=27.82 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred ccEEEEEC-CcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHHHHhc
Q 022772 202 VRCAVIAS-PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLD 258 (292)
Q Consensus 202 vk~IiIaG-PGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~EvL~ 258 (292)
...++++| ||.=|..+...+.... ...++.++++..+...+++.+.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l-----------~~~~~~i~~~~~~~~~i~~~~~ 94 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV-----------NADMMFVNGSDCKIDFVRGPLT 94 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT-----------TEEEEEEETTTCCHHHHHTHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh-----------CCCEEEEcccccCHHHHHHHHH
Confidence 45789999 9999999998876653 1256677777666555555443
No 17
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=29.82 E-value=70 Score=27.85 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHH
Q 022772 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 254 (292)
Q Consensus 182 ~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~ 254 (292)
+++|...++..+...++.-++..|||+|.-...+.|.+.+.+...+.. .....+.-+..+...++.
T Consensus 218 ~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~-------~~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 218 ITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFG-------LRDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTC-------CTTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhc-------cCCCeEEECCcCChHHHH
Confidence 445555555555555555578899999966555667776666543221 123344556666666554
No 18
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=29.03 E-value=1e+02 Score=27.01 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccH-HHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 253 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~k-d~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl 253 (292)
.+++|...++..+....+.-++..|||+|.-.-. +.|.+.+.+...+...... ...+.+.-+..+...++
T Consensus 240 ~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~---~~~~~i~~s~l~~~a~~ 310 (321)
T 3r8e_A 240 VWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYY---TDDMYIGKATLENDAGL 310 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHH---HTTCEEEECSSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhccccc---CCCCEEEEcCCCCcHHH
Confidence 3556666666666665555578999999987644 5566666666543321111 12333455555555554
No 19
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=25.30 E-value=1.7e+02 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhccCcCCccEEEEECCc
Q 022772 184 KFFENVLQAFLKHVDFNVVRCAVIASPG 211 (292)
Q Consensus 184 ~Ff~~v~~~l~~~~~~~~vk~IiIaGPG 211 (292)
.++.++.+++.+.-.-+.+++|||.|-|
T Consensus 39 ~~~~~l~~al~~~~~d~~vr~vVltg~g 66 (258)
T 3lao_A 39 AMLADLALAMGEYERSEESRCAVLFAHG 66 (258)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 3344444444443333579999999877
No 20
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=24.38 E-value=1.2e+02 Score=26.67 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchHH
Q 022772 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 254 (292)
Q Consensus 182 ~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl~ 254 (292)
+++|.+.++..+....+.-++..|||+|.-...+.|.+.+.+...+.. ........+.-+..+...++.
T Consensus 250 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~----~~~~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 250 VERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYL----LSVAKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGS----CTTCCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHh----ccccCCCEEEECCCCCcHHHH
Confidence 445555555555555555578899999965444556666665543321 111123344555566555554
No 21
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=24.02 E-value=62 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=22.0
Q ss_pred cchHHHHhcChhHHHHhhhhhHHHHHH
Q 022772 250 KHSLREVLDAPNVMNMIKDTKAAQEVQ 276 (292)
Q Consensus 250 ~~gl~EvL~~~~v~~~l~d~k~~~E~~ 276 (292)
+.++..++++|++..+++|..+..-..
T Consensus 10 ee~~~~~m~dPEi~~im~DP~~~~~lq 36 (71)
T 2llw_A 10 EETYQRAMKDPEVAAIMQDPVMQSILQ 36 (71)
T ss_dssp HHHHHHHHHSHHHHHHHTCTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHhCCHHHHHHHH
Confidence 558888999999999999988776655
No 22
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=23.93 E-value=1.5e+02 Score=26.94 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCccEEEEECCcc--------cHHHHHHHHHHHHHhcccccccccCCcEEEE----ecCCCccchHHHHhcChhHHHHhh
Q 022772 200 NVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMIK 267 (292)
Q Consensus 200 ~~vk~IiIaGPGf--------~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~----~tS~~~~~gl~EvL~~~~v~~~l~ 267 (292)
...+.||+.||-- +++.+++|+.... -++|... +.|.+.+..++-..++..+.+-++
T Consensus 140 p~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F-----------~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~ 208 (337)
T 4dey_A 140 PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRF-----------EGRISITRVTADISLAKRSVLNNPSKHAIIERSNT 208 (337)
T ss_dssp CSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHT-----------TTSEEEEEECSCGGGC-------------------
T ss_pred CCCCceEEECCccccchhHHHHHHHHHHhhHHhc-----------CCccceEeecchhhhcchhhhhcccchhhhccccc
Confidence 3677899999986 3566667766664 2454322 556777777777777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 022772 268 DTKAAQEVQALKDFFNMLT 286 (292)
Q Consensus 268 d~k~~~E~~~le~F~~~l~ 286 (292)
...+..-..-+++.++...
T Consensus 209 ~~~~~ev~seVe~i~~v~~ 227 (337)
T 4dey_A 209 RSSLAEVQSEIERIFELAR 227 (337)
T ss_dssp CCCHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHhHHHHHHHHHh
Confidence 7777765567777777654
No 23
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=22.09 E-value=1e+02 Score=26.40 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhccCcCCccEEEEECCcccHHHHHHHHHHHH
Q 022772 182 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 225 (292)
Q Consensus 182 ~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~kd~f~~yl~~~~ 225 (292)
++++.+.++..+....+.-++..|||+|.-...+.|.+.+.+..
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l 251 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAV 251 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHH
Confidence 44555555555555544446788999998754566666655544
No 24
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=22.07 E-value=1.3e+02 Score=26.37 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCc-----ccHHHHHHHHHHHHHhcccccccccCCcEEEEecCCCccchH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 253 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPG-----f~kd~f~~yl~~~~~~~~~~~~~~~~~ki~~~~tS~~~~~gl 253 (292)
...++++.++..+...++.-++..|||+|.- +..+.+.+.+..... .... ...+-++-++.+...|+
T Consensus 219 ~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~----~~~~--~~~~~i~~s~lg~~ag~ 290 (310)
T 3htv_A 219 FVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLR----RPLP--HQVVRFIAASSSDFNGA 290 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTSC----TTTT--TTTCEEEECCCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHhh----cccc--cCCcEEEEcCCCCcHHH
Confidence 4566777777777666666678999999953 344555555444321 1111 12344556666666654
No 25
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=21.97 E-value=2.2e+02 Score=24.84 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhccCcCCccEEEEECCcccH-HHHHHHHHHHHHhccc-ccccccCCcEEEEecCCCccchHH
Q 022772 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 254 (292)
Q Consensus 181 ~~~~Ff~~v~~~l~~~~~~~~vk~IiIaGPGf~k-d~f~~yl~~~~~~~~~-~~~~~~~~ki~~~~tS~~~~~gl~ 254 (292)
.+++|.+.++..+....+.-++..|||+|.-... +.|.+.+.+...+... ... ...+-++-+..+...|+.
T Consensus 232 ~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 232 SFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 4566666666666666555578899999965543 3445555554433211 111 123344555556665553
No 26
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=21.66 E-value=2.8e+02 Score=21.68 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=54.7
Q ss_pred CceEEEeccC--CchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEEeecCCCeEEEEEEEeec
Q 022772 13 PGSVKMEPVD--SDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILE 90 (292)
Q Consensus 13 ~g~v~l~pE~--~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~v~f~~~~~~Lri~G~i~~~ 90 (292)
+|.++ ..|+ .|| +...-....+..+...|..++......|. + .+.|+....
T Consensus 24 ~G~lk-rvEDl~teD-Fv~sA~~s~~~~L~~stv~~I~~s~~~g~-----v---------~ltF~~g~~----------- 76 (133)
T 1oa8_A 24 NGELK-KVEDLKTED-FIQSAEISNDLKIDSSTVERIEDSHSPGV-----A---------VIQFAVGEH----------- 76 (133)
T ss_dssp TSCEE-EGGGCCHHH-HHHHHHHCSSEEEEEEEEEEEEECSSTTE-----E---------EEEEEETTT-----------
T ss_pred CCceE-EeecccHHH-HHHhhccCcccccccceEEEeecCCCCCe-----E---------EEEEeeCCC-----------
Confidence 45565 6777 888 55557788899999999998864322221 0 224543322
Q ss_pred ccccccCcEEEEEEccCCeeEEEEccCChhhHHHHHhhcC
Q 022772 91 NEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAAD 130 (292)
Q Consensus 91 ~e~v~~G~~HTl~i~~~~~i~i~K~~w~~~~le~L~ea~~ 130 (292)
.+.-++++.+..||=++-..|+++.=++=.+...
T Consensus 77 ------~~~v~~ev~~ehPFFV~gqGWsSc~P~~T~~~yg 110 (133)
T 1oa8_A 77 ------RAQVSVEVLVEYPFFVFGQGWSSCCPERTSQLFD 110 (133)
T ss_dssp ------TEEEEEEEETTCCEEETTTEEEESCHHHHHHHHC
T ss_pred ------ccEEEEEecCCCCcEEcCCcccccCHhHhhHhhC
Confidence 2345677777777777766998887776655443
No 27
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=20.44 E-value=3.7e+02 Score=22.36 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCcCCccEEEEE-CCcc
Q 022772 178 YESALNKFFENVLQAFLKHVDFNVVRCAVIA-SPGF 212 (292)
Q Consensus 178 ~~~~~~~Ff~~v~~~l~~~~~~~~vk~IiIa-GPGf 212 (292)
|.+.+--+.+++++... +...++++|.++ |||-
T Consensus 45 Hse~L~p~i~~~L~~a~--~~~~dld~Iav~~GPGs 78 (218)
T 2a6a_A 45 HAEILPVVVKKLLDELD--LKVKDLDVVGVGIGPGG 78 (218)
T ss_dssp GGGHHHHHHHHHHHHHT--CCGGGCSEEEEECCSSC
T ss_pred HHHHHHHHHHHHHHHcC--CCHHHCCEEEEEcCCCc
Confidence 44455556665554432 344678888775 9994
No 28
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=20.10 E-value=63 Score=28.63 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.5
Q ss_pred CccEEEEECCcccHHHHHHHHHHHHH
Q 022772 201 VVRCAVIASPGFTKDQFHRHLLLEAE 226 (292)
Q Consensus 201 ~vk~IiIaGPGf~kd~f~~yl~~~~~ 226 (292)
..+.|||.||| |+.+.+.|.++.+
T Consensus 99 ~~RpvVl~Gp~--K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 99 YTRPVIILGPL--KDRINDDLISEYP 122 (292)
T ss_dssp SCCCEEEESTT--HHHHHHHHHHHCT
T ss_pred CCCeEEEeCCC--HHHHHHHHHHhCh
Confidence 35779999999 9999888777654
Done!