Your job contains 1 sequence.
>022773
MGVEDFSTDLDSNSNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVY
RPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIW
EFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWV
TFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA
RTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022773
(292 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 1054 1.5e-106 1
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 1054 1.5e-106 1
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 741 2.2e-73 1
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 709 5.5e-70 1
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 660 8.5e-65 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 583 1.2e-56 1
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 583 1.2e-56 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 583 1.2e-56 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 583 1.2e-56 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 583 1.2e-56 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 580 2.5e-56 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 576 6.8e-56 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 576 6.8e-56 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 576 6.8e-56 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 576 6.8e-56 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 576 6.8e-56 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 576 6.8e-56 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 574 1.1e-55 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 574 1.1e-55 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 573 1.4e-55 1
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 572 1.8e-55 1
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 568 4.8e-55 1
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 557 7.0e-54 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 544 1.7e-52 1
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 386 5.3e-45 2
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 456 3.5e-43 1
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 456 3.5e-43 1
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 424 8.7e-40 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 401 1.5e-39 2
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 421 1.8e-39 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 419 2.9e-39 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 245 5.1e-39 2
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 245 5.1e-39 2
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 384 1.5e-35 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 274 7.9e-33 2
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 313 5.0e-28 1
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 293 6.6e-26 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 279 6.8e-24 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 279 6.8e-24 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 267 3.8e-23 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 255 7.0e-22 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 247 4.9e-21 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 188 7.3e-20 2
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 234 1.2e-19 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 224 1.4e-18 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 218 5.8e-18 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 218 5.8e-18 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 212 2.5e-17 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 188 8.8e-15 1
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 169 1.3e-12 1
UNIPROTKB|H0YBT3 - symbol:CNOT7 "CCR4-NOT transcription c... 127 8.2e-08 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 122 3.0e-07 1
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 200/269 (74%), Positives = 229/269 (85%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D Y +L
Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLL 71
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
K+NVDAL+LIQVGLTLSD +GNLPDLG + FIWEFNFRDFD+A DAHAPDSIELLR
Sbjct: 72 KANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRR 131
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP L
Sbjct: 132 QGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGAL 191
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQS-LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
EF V+RV FG +YDVKH+M+FC+ L+GGLDRVARTL+V+RAVGKCHQAGSDSLLTW
Sbjct: 192 GEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTW 251
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGLEVY 292
HAFQ++RD+YFV DGPEKHAGVLYGLEV+
Sbjct: 252 HAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 199/269 (73%), Positives = 229/269 (85%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D R+ P+ Y +L
Sbjct: 15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLL 69
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
KSNVDAL+LIQVGLTLSD+ GNLPDLG N ++IWEFNFRDFD+ D HAPDSIELLR
Sbjct: 70 KSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRR 129
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP L
Sbjct: 130 HGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVAL 189
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V+RAVGKCHQAGSDSLLTW
Sbjct: 190 REFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTW 249
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGLEVY 292
AFQ++RD+YFV DG EKHAGVLYGLEV+
Sbjct: 250 QAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 147/268 (54%), Positives = 196/268 (73%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
REVW NLESE LI +V+D +PF++MDTEFPG+V RP T + HY+ L
Sbjct: 13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLR 143
K+NV+ L +IQ+GLT SD GNLP G+ +NK+ IW+FNFR+FD+ +D +A DSIELLR
Sbjct: 66 KTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLR 123
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP
Sbjct: 124 QSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPET 183
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
F ++ V+F +YD+KH+M+FC SL+GGL+++A LDV R VG CHQAGSDSLLT
Sbjct: 184 QTGFFEMISVYFPR-VYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTS 241
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGLEV 291
F+K+++ +F+ EK++GVLYGL V
Sbjct: 242 CTFRKLQENFFI-GSMEKYSGVLYGLGV 268
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 144/268 (53%), Positives = 191/268 (71%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
REVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y +Y+ L
Sbjct: 13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLR 143
K NVD L LIQVGLT SD +GNLP G+ +KF IW+FNFR+F+I D +A +SIELLR
Sbjct: 66 KENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLR 122
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH YDFGYLVK+LT + LP
Sbjct: 123 QCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLK 182
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
+F +L V+F +YD+KH+M FC L+GGL+R+A + V R VG CHQAGSDSLLT
Sbjct: 183 QADFFKLLYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTL 240
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGLEV 291
+F+K+++ YF EK+ GVLYGL V
Sbjct: 241 GSFRKLKERYFP-GSTEKYTGVLYGLGV 267
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 132/267 (49%), Positives = 182/267 (68%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKV 83
REVW NLE E LI Q ID +P+++MDTEFPG+V + +P+ PY + + Y
Sbjct: 17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDT 74
Query: 84 LKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLR 143
LK+NV+ L LIQ+GLTLSD GNLP G+ N + IW+FNFR+F++ +D A DSIELLR
Sbjct: 75 LKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLR 132
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH YDFGYL+K+L+ + LP
Sbjct: 133 KSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 192
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
+ +F + FF +YD+K++M FC +LYGGL+++A L V R VG HQAGSDSLLT
Sbjct: 193 ISDFFDQMEKFFPV-VYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTL 250
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGLE 290
F K+++ +F K++G L+GL+
Sbjct: 251 RTFIKMKEFFFT-GSLLKYSGFLFGLD 276
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/266 (47%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/266 (47%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/266 (47%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/266 (47%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/266 (47%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 122/266 (45%), Positives = 181/266 (68%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA+NLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 13 EVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 64
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 65 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAS 117
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++SV W++FHS YDFGY+VK+LT LP
Sbjct: 118 SGLQFQKHEEEGIDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEE 177
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 178 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 235
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 236 AFFRMKELFFEDTIDDAKYCGRLYGL 261
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/266 (45%), Positives = 180/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/266 (45%), Positives = 180/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/266 (45%), Positives = 180/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/266 (45%), Positives = 180/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/266 (45%), Positives = 180/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 125/266 (46%), Positives = 177/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NLE E + I QV ++ +I+MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTS 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG++++ FAEL+M+SG+V E V W++FHS YDFGYL+KIL+ LP
Sbjct: 119 SGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 VDFFEILRLFFPI-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 123/268 (45%), Positives = 174/268 (64%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
REVWA NLE E LI +++D YP +++DTEFPG V +P ++ S R Y P +Y+ L
Sbjct: 48 REVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKP-IE-SMRMY-----PDYNYQTL 100
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+SNVD L +IQ G+T SDS+G LP W+FNF+ F + D ++P +IELL+
Sbjct: 101 RSNVDLLKIIQFGITFSDSTGCLPV------PTCTWQFNFK-FSLKDDMYSPYAIELLKS 153
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GIDF+R G+D F+EL +SSG+V N+ + W+ FH YDFGYL+K+L+ LP
Sbjct: 154 CGIDFQRIEDYGIDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLLKVLSCSELPKSE 213
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR++F IYDVK++M+ C++L GGL +A L+V R VG HQAGSDSLLT
Sbjct: 214 SDFFDLLRIYFPC-IYDVKYLMKSCKNLKGGLSGLAEDLNVVR-VGPQHQAGSDSLLTNS 271
Query: 265 AFQKIRDVYFVHD-GPEKHAGVLYGLEV 291
F K+R+ +F ++ K+ G+LYG V
Sbjct: 272 TFFKLREEFFENEIDDHKYKGILYGYNV 299
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 122/266 (45%), Positives = 178/266 (66%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-PSTRPYFRQRKPSDHYKVL 84
EVWASN+E E I Q+I Y +I+MDTEFPG+V RP + ST Y Y++L
Sbjct: 14 EVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDY--------QYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L ++Q+GLT + G+ P G W+FNF+ F++ D ++ DSI+LL+
Sbjct: 66 RCNVDLLKIVQLGLTFMNEDGDYPP----GTTT--WQFNFK-FNLTEDMYSQDSIDLLQN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SGLV E+V W++FHS YDFGYLVK+LT LP
Sbjct: 119 SGLQFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF IYDVK++M+ C++L GGL VA L++ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFQILNLFFPA-IYDVKYLMKSCKNLKGGLQEVADQLELKR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDNIDDAKYCGRLYGL 262
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 122/266 (45%), Positives = 179/266 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I + + Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT
Sbjct: 179 HEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFVHDGPE-KHAGVLYGL 289
AF ++++++F + K+ G LYGL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 117/254 (46%), Positives = 172/254 (67%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-PSTRPYFRQRKPSDHYKV 83
R+VW NLE EF I +V+ +Y +++MDTEFPG+V RP + ST Y HY++
Sbjct: 22 RDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADY--------HYQL 73
Query: 84 LKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLR 143
L+ NVD L +IQ+GLT D G P G + W+FNF+ F+++ D +A DSI+LL+
Sbjct: 74 LRCNVDLLRIIQLGLTFMDDDGKTPP----GYST--WQFNFK-FNLSEDMYAQDSIDLLQ 126
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
GI F+++ ++G+D + FAEL+MSSG+V E++ W+ FHS YDFGYL+K+LT ++LP
Sbjct: 127 NSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPD 186
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
EF +L ++F N I+D+K++M+ C++L GGL VA L++ R VG HQAGSD+LLT
Sbjct: 187 ESEFFDLLHIYFPN-IFDIKYLMKSCKNLKGGLQEVADQLELRR-VGPQHQAGSDALLTG 244
Query: 264 HAFQKIRDVYFVHD 277
AF K+R+V +D
Sbjct: 245 MAFFKMREVQHTND 258
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 121/270 (44%), Positives = 169/270 (62%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD-HYKV 83
++VW NL+ E E I ++D Y +I+MDTEFPG+V TRP R SD HY+
Sbjct: 10 KDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIV--------TRPVGNFRSTSDYHYQT 61
Query: 84 LKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLR 143
L+ NVD L +IQ+GLT SDS GNL W+FNF+ F ++ D +A DSI+LL
Sbjct: 62 LRLNVDQLKIIQLGLTFSDSEGNL------AKPTCTWQFNFK-FSLSEDMYAQDSIDLLS 114
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
GI+F++N G+D + F E +MSSG+V N+++ W++FHS YDFGYL+K LT LP
Sbjct: 115 RSGIEFKKNEANGIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLD 174
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
+F R +F IYD+K+IM+ C++L GGL +A LD+ R +G HQAGSDSLLT
Sbjct: 175 EADFFGSARTYFPC-IYDIKYIMKSCKNLKGGLSELADDLDIKR-IGPQHQAGSDSLLTS 232
Query: 264 HAFQKIRDVYFVHD-GPEKHAGVLYGLEVY 292
F K+R ++F + K+ +LYGL +
Sbjct: 233 TTFFKMRKMFFENQLDDSKYLNILYGLSSF 262
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 119/266 (44%), Positives = 168/266 (63%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKV 83
R+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP V S+ Y HY+
Sbjct: 26 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQT 77
Query: 84 LKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLR 143
L++NVD+L +IQ+GL LSD GN P W+FNF F++ D +AP+SIELL
Sbjct: 78 LRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLT 130
Query: 144 LQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 203
GIDF+++++ G++ FAEL++ SGLV E V+W+TFHS YDF YL+K +T+ LP+
Sbjct: 131 KSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAE 190
Query: 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTW 263
+EF +L ++F N YD+K+IM+ + GL +A L + R +G HQAGSD+LLT
Sbjct: 191 YEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTA 248
Query: 264 HAFQKIRDVYFVHDGPEKHAGVLYGL 289
F +IR YF + LYGL
Sbjct: 249 RIFFEIRSRYFDGSIDSRMLNQLYGL 274
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 115/244 (47%), Positives = 166/244 (68%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT +
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGN 236
Query: 265 AFQK 268
A+++
Sbjct: 237 AYEE 240
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 386 (140.9 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 87/214 (40%), Positives = 124/214 (57%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-PSTRPYFRQ--RKPSDHY 81
REVW NL E ++ +I+RY +ISMDT FPG+V RP S R Y Q R D
Sbjct: 127 REVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRDYHYQCLRANVDML 186
Query: 82 KVLKSNVDALNLIQVGLTLSDSSGNLPDL-GSGGNNK-------FIWEFNFRDFDIATDA 133
V++ + N +S ++ +L G+ G + W+FNF+ F + D
Sbjct: 187 NVIQIGITLFNEDGENPPARPNSTDVAELLGAAGRRSAQQGPLPYTWQFNFQ-FSLKDDM 245
Query: 134 HAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVK 193
++ IE L GIDF ++G++ FA LM+SSG+VC+ES+SW++FHSAYDFGYL+K
Sbjct: 246 YSQSQIESLLQAGIDFVALERDGINPKEFASLMISSGMVCDESISWISFHSAYDFGYLLK 305
Query: 194 ILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMR 227
+L LP DEF +LR+FF N +YDVK+ M+
Sbjct: 306 LLWCNMLPEDQDEFKQLLRLFFPN-VYDVKYFMK 338
Score = 104 (41.7 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 236 LDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLE 290
L+ +A L V R G HQAGSDSLLT AF ++R+ F PE G ++GLE
Sbjct: 369 LETLAEVLKVKRT-GPAHQAGSDSLLTGRAFFQMREKVFGGKLPEDILGQVWGLE 422
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 96/208 (46%), Positives = 140/208 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSL 232
+F +LR+FF IYDVK++M+ C++L
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNL 205
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 96/208 (46%), Positives = 140/208 (67%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSL 232
+F +LR+FF IYDVK++M+ C++L
Sbjct: 179 LDFFEILRLFFPV-IYDVKYLMKSCKNL 205
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 101/252 (40%), Positives = 145/252 (57%)
Query: 27 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKS 86
V+ SN+E EF I ++ YP+++MDTEFPG+V P T FR ++ ++ +V
Sbjct: 26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP---LGT---FRSKEDFNYQQVF-C 78
Query: 87 NVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQG 146
NV+ L LIQVG + + G LP G +W+FNF +F A D + +S+E+LR G
Sbjct: 79 NVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAG 131
Query: 147 IDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDE 206
IDF + G+ + F EL+ +SGL+ + ++W+TF S YDFGYL+K +T LP
Sbjct: 132 IDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEEST 191
Query: 207 FLTVLRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
F + F + +D+K ++R C S L GGL VA LDV R G HQAGSD+LLT
Sbjct: 192 FFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLT 249
Query: 263 WHAFQKIRDVYF 274
F KI+ +F
Sbjct: 250 AATFFKIKKQFF 261
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 401 (146.2 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 84/206 (40%), Positives = 131/206 (63%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP T FR K HY+ +
Sbjct: 161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPI---GT---FRS-KVDYHYQTM 213
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
++NVD LN IQ+GL+LSD++GN PD N W+FNF +FD + + +S+ELLR
Sbjct: 214 RANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRK 267
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S+P+
Sbjct: 268 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 327
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQ 230
++F + + N YD+ + + Q
Sbjct: 328 EDFEWWVHQYMPN-FYDLNLVYKIIQ 352
Score = 37 (18.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 256 GSDSLLTWHAFQKIRDVYFVHDGPE-----KHAGVLYGLE 290
G SLL +F ++ + +H P K+ GV+YG++
Sbjct: 392 GGQSLLMLLSFCQLSKLS-MHKFPNGTDFAKYQGVIYGID 430
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 90/199 (45%), Positives = 133/199 (66%)
Query: 35 EFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNL 93
E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L+ NVD L +
Sbjct: 3 EMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLLRCNVDLLKI 54
Query: 94 IQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNR 153
IQ+GLT + G P G+ W+FNF+ F++ D +A DSIELL GI F+++
Sbjct: 55 IQLGLTFMNEQGEYPP-GTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHE 107
Query: 154 KEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRV 213
+EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP +F +LR+
Sbjct: 108 EEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRL 167
Query: 214 FFGNNIYDVKHIMRFCQSL 232
FF IYDVK++M+ C++L
Sbjct: 168 FFPV-IYDVKYLMKSCKNL 185
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 89/214 (41%), Positives = 131/214 (61%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VW NL E ++ +++RYP+ISMDTEFPG+V RP + T K HY+ L
Sbjct: 139 RDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARP-IGSFTN------KADYHYQTL 191
Query: 85 KSNVDALNLIQVGLTLSDSSGNLP--DL--GSG---GNNKF----IWEFNFRDFDIATDA 133
+ NVD L +IQ+G+TL G +P D +G GN W+FNFR F + D
Sbjct: 192 RCNVDLLKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFR-FSLEEDM 250
Query: 134 HAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVK 193
+A +S +L GIDF + K G+D + F L++SSGLV + V W++FHS YDFGYL+K
Sbjct: 251 YAQESTAMLAKAGIDFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGYLMK 310
Query: 194 ILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMR 227
I+ ++LP +EF +L +FF + +YD+K++M+
Sbjct: 311 IMLCQALPENEEEFHKLLNIFFPS-LYDIKYLMK 343
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 245 (91.3 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 184 SAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTL 243
+ YDFGY+VK+LT LP EF +L +FF + IYDVK++M+ C++L GGL VA L
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 244 DVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-KHAGVLYGL 289
D+ R +G+ HQAGSDSLLT AF ++++++F + K+ G LYGL
Sbjct: 163 DLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 208
Score = 188 (71.2 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFR 125
+ NVD L +IQ+GLT ++ G P SG N W+FNF+
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK 100
Score = 42 (19.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 182 FHSAYDFGYLVKILTRRSLPSGLDE 206
F S YD YL+K + ++L GL E
Sbjct: 135 FPSIYDVKYLMK--SCKNLKGGLQE 157
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 245 (91.3 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 184 SAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTL 243
+ YDFGY+VK+LT LP EF +L +FF + IYDVK++M+ C++L GGL VA L
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 244 DVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-KHAGVLYGL 289
D+ R +G+ HQAGSDSLLT AF ++++++F + K+ G LYGL
Sbjct: 163 DLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 208
Score = 188 (71.2 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFR 125
+ NVD L +IQ+GLT ++ G P SG N W+FNF+
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK 100
Score = 42 (19.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 182 FHSAYDFGYLVKILTRRSLPSGLDE 206
F S YD YL+K + ++L GL E
Sbjct: 135 FPSIYDVKYLMK--SCKNLKGGLQE 157
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 134 HAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVK 193
++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK
Sbjct: 2 YSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVK 61
Query: 194 ILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCH 253
+LT LP EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G+ H
Sbjct: 62 LLTDSRLPEEEHEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQH 119
Query: 254 QAGSDSLLTWHAFQKIRDVYFVHDGPE-KHAGVLYGL 289
QAGSDSLLT AF ++++++F + K+ G LYGL
Sbjct: 120 QAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 156
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 274 (101.5 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 73/194 (37%), Positives = 97/194 (50%)
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
Y+ +K NVD +LIQ+GLTL G G WE N DF+ + SI
Sbjct: 50 YRDMKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIA 98
Query: 141 LLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTR 197
L+ G+D ++ R+EG+ E M + NE + WVTF +YD YL+K LTR
Sbjct: 99 FLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTR 155
Query: 198 RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQA 255
+ LP EF ++ G +YDVK + C L GL R+A L + R VGK H A
Sbjct: 156 KPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRR-VGKAHHA 214
Query: 256 GSDSLLTWHAFQKI 269
GSDS LT F K+
Sbjct: 215 GSDSELTARVFTKL 228
Score = 100 (40.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N ++E I + I++DTEFPG + +D S R Y+ +K
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDE--IR-------YRDMK 54
Query: 86 SNVDALNLIQVGLTL 100
NVD +LIQ+GLTL
Sbjct: 55 FNVDNTHLIQLGLTL 69
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 81/225 (36%), Positives = 119/225 (52%)
Query: 69 RPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFD 128
R YF + Y+ +K NV+ LIQ G TL ++ G + GG +WE NF +F
Sbjct: 46 RTYF-DSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFG 95
Query: 129 IATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYD 187
+D SIE LR G+D ++ R EGVD + + + + V +VTF AYD
Sbjct: 96 DPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYD 155
Query: 188 FGYLVKILTRRSLPSGLDEFLT-VLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLD 244
F Y + IL LP EF T V++VF +YD K + FC+ L + GL ++A+ L
Sbjct: 156 FAYFLSILNHGKLPETHGEFATEVVKVF--GQVYDTKVMAGFCEGLGEHLGLSKLAQLLQ 213
Query: 245 VSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 289
++R VG+ H AGSDSL+T F K++ VY + G++YG+
Sbjct: 214 ITR-VGRAHHAGSDSLMTALVFIKLKHVY---EDSRFARGLIYGI 254
Score = 142 (55.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R VW SN++ E +++ + R+P I+ DTE+PG+++R D S+ + Y+ +
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAM 60
Query: 85 KSNVDALNLIQVGLTLSDSSGNL 107
K NV+ LIQ G TL ++ G +
Sbjct: 61 KGNVENTKLIQCGFTLFNAKGEI 83
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 65/148 (43%), Positives = 97/148 (65%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP + FR +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGE------FRSN--ADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P G + W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPP----GTST--WQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLV 172
GI F+++ +EG+++ FAEL+M+SG+V
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVV 146
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 279 (103.3 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 71/206 (34%), Positives = 115/206 (55%)
Query: 25 REVWASNLESEFELISQVI-DRYP--FISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD-H 80
+EVW+SNLE EF+ + I D+ FI++ E PG+V RP T F+ SD H
Sbjct: 155 KEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARP---VGT---FKSS--SDYH 206
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
++ L++N D LNLIQ+ L + S N + IW+FNF +D+ + + + +
Sbjct: 207 FQTLRANSDLLNLIQLSLCVIKISKN-----ETISTPVIWQFNFL-YDLTKEMYNEEHLA 260
Query: 141 LL-RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRS 199
+L + I+F+ G+ FAELM+ SGL+ +++++WV+FH+ YD G+ V +L+
Sbjct: 261 MLAQTSQINFQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDD 320
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHI 225
LP +F +F N YD+K+I
Sbjct: 321 LPVDEPDFYWWCAKYFPN-FYDLKYI 345
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 279 (103.3 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 71/206 (34%), Positives = 115/206 (55%)
Query: 25 REVWASNLESEFELISQVI-DRYP--FISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD-H 80
+EVW+SNLE EF+ + I D+ FI++ E PG+V RP T F+ SD H
Sbjct: 155 KEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARP---VGT---FKSS--SDYH 206
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
++ L++N D LNLIQ+ L + S N + IW+FNF +D+ + + + +
Sbjct: 207 FQTLRANSDLLNLIQLSLCVIKISKN-----ETISTPVIWQFNFL-YDLTKEMYNEEHLA 260
Query: 141 LL-RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRS 199
+L + I+F+ G+ FAELM+ SGL+ +++++WV+FH+ YD G+ V +L+
Sbjct: 261 MLAQTSQINFQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDD 320
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHI 225
LP +F +F N YD+K+I
Sbjct: 321 LPVDEPDFYWWCAKYFPN-FYDLKYI 345
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 72/207 (34%), Positives = 104/207 (50%)
Query: 66 PST-RPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNF 124
PST R + + Y + +VD LIQ+GLTL D +G + GG WE NF
Sbjct: 21 PSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINF 71
Query: 125 RDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHS 184
DF + DA SIE LR G+D + R+EG+ F M +++WVTFH
Sbjct: 72 SDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHG 130
Query: 185 AYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVART 242
+YD YL+K T +LP + F + G+ +YD+K + C+ L GL+ +A
Sbjct: 131 SYDIAYLLKGFTGEALPVTSERFSKAVARVLGS-VYDLKVMAGRCEGLSSRLGLETLAHE 189
Query: 243 LDVSRAVGKCHQAGSDSLLTWHAFQKI 269
++R VG H AGS++ LT F K+
Sbjct: 190 FGLNR-VGTAHHAGSNNELTAMVFAKV 215
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 57/135 (42%), Positives = 86/135 (63%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 145 QGIDFERNRKEGVDS 159
G+ F+++ +EG+D+
Sbjct: 119 SGLQFQKHEEEGIDT 133
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 68/192 (35%), Positives = 92/192 (47%)
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
Y+ +K NVD +LIQ+G TL D G WE N DFD SI
Sbjct: 54 YRDMKFNVDNTHLIQLGFTLFDRRGFAKT----------WEINLSDFDEHKCFKNDKSIA 103
Query: 141 LLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RS 199
L+ G++ ++ R+EG+ F + ++WV F +YD YLVK LT +
Sbjct: 104 FLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKP 163
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGS 257
LP +EF ++ G ++DVK I C L GL R+A L + R VGK H AGS
Sbjct: 164 LPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGS 222
Query: 258 DSLLTWHAFQKI 269
DS LT F K+
Sbjct: 223 DSELTARVFTKL 234
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 188 (71.2 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFR 125
+ NVD L +IQ+GLT ++ G P SG N W+FNF+
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK 100
Score = 62 (26.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 184 SAYDFGYLVKILTRRSLP 201
+ YDFGY+VK+LT LP
Sbjct: 104 TGYDFGYMVKLLTDSRLP 121
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 66/192 (34%), Positives = 90/192 (46%)
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
Y+ +K NVD +LIQ+G TL D G WE N DF+ SI
Sbjct: 49 YRDMKFNVDNTHLIQLGFTLFDRRGITKT----------WEINLSDFNEHKCFKNDKSIA 98
Query: 141 LLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RS 199
L+ G++ ++ +EG+ F + ++WV F +YD YLVK LT +
Sbjct: 99 FLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKP 158
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGS 257
LP +EF + G ++DVK I C L GL R+A L + R VGK H AGS
Sbjct: 159 LPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGS 217
Query: 258 DSLLTWHAFQKI 269
DS LT F K+
Sbjct: 218 DSELTARVFTKL 229
Score = 112 (44.5 bits), Expect = 0.00057, P = 0.00057
Identities = 30/80 (37%), Positives = 41/80 (51%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N E E + I + + I++DTEFPG + +D S R Y+ +K
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEE--IR-------YRDMK 53
Query: 86 SNVDALNLIQVGLTLSDSSG 105
NVD +LIQ+G TL D G
Sbjct: 54 FNVDNTHLIQLGFTLFDRRG 73
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 39/82 (47%), Positives = 61/82 (74%)
Query: 134 HAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVK 193
++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK
Sbjct: 2 YSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVK 61
Query: 194 ILTRRSLPSGLDEFLTVLRVFF 215
+LT LP EF +L +FF
Sbjct: 62 LLTDSRLPEEEHEFFHILNLFF 83
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 52/118 (44%), Positives = 74/118 (62%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 52/118 (44%), Positives = 74/118 (62%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 47/100 (47%), Positives = 68/100 (68%)
Query: 191 LVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVG 250
+VK+LT LP EF +L +FF + IYDVK++M+ C++L GGL VA LD+ R +G
Sbjct: 1 MVKLLTDSRLPEEEHEFFHILNLFFPS-IYDVKYLMKSCKNLKGGLQEVADQLDLQR-IG 58
Query: 251 KCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-KHAGVLYGL 289
+ HQAGSDSLLT AF ++++++F + K+ G LYGL
Sbjct: 59 RQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 98
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFR 125
+ NVD L +IQ+GLT ++ G P SG N W+FNF+
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK 100
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 169 (64.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWASNLE E I +++ Y +I+MDTEFPG+V RP + FR D+ Y++L
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGE------FRSS--IDYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLP 108
+ NVD L +IQ+GLT ++ G P
Sbjct: 66 RCNVDLLKIIQLGLTFTNEKGEYP 89
>UNIPROTKB|H0YBT3 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000518541 Uniprot:H0YBT3
Length = 91
Score = 127 (49.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 186 YDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL 232
YDFGYL+KILT +LP +F +LR+FF IYDVK++M+ C++L
Sbjct: 3 YDFGYLIKILTNSNLPEEELDFFEILRLFFPV-IYDVKYLMKSCKNL 48
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 122 (48.0 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP 62
EVWASNLE E I +++ Y +I+MDTEFPG+V RP
Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRP 50
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 292 279 0.00081 115 3 11 22 0.47 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 611 (65 KB)
Total size of DFA: 215 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.37u 0.11s 22.48t Elapsed: 00:00:01
Total cpu time: 22.37u 0.11s 22.48t Elapsed: 00:00:01
Start: Fri May 10 18:20:06 2013 End: Fri May 10 18:20:07 2013