BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022773
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMJ|B Chain B, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
Caf1
pdb|4GMJ|D Chain D, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
Caf1
pdb|4GMJ|F Chain F, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
Caf1
Length = 285
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 175/266 (65%), Gaps = 19/266 (7%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L
Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLL 65
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTT 118
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 119 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 178
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 179 LDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 236
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 237 AFFKMREMFFEDHIDDAKYCGHLYGL 262
>pdb|2D5R|A Chain A, Crystal Structure Of A Tob-Hcaf1 Complex
Length = 252
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 175/266 (65%), Gaps = 19/266 (7%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVL 84
EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L
Sbjct: 4 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLL 55
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 56 RCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTT 108
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 109 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEE 168
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 169 LDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGM 226
Query: 265 AFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 227 AFFKMREMFFEDHIDDAKYCGHLYGL 252
>pdb|2P51|A Chain A, Crystal Structure Of The S. Pombe Pop2p Deadenylation
Subunit
pdb|3G0Z|A Chain A, Structure Of S. Pombe Pop2p - Zn2+ And Mn2+ Bound Form
pdb|3G10|A Chain A, Structure Of S. Pombe Pop2p - Mg2+ And Mn2+ Bound Form
Length = 333
Score = 220 bits (560), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 167/267 (62%), Gaps = 20/267 (7%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD--HYK 82
R+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP K SD HY+
Sbjct: 24 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARP---------LGVFKSSDDYHYQ 74
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
L++NVD+L +IQ+GL LSD GN P W+FNF F++ D +AP+SIELL
Sbjct: 75 TLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNFT-FNLQDDMYAPESIELL 127
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GIDF+++++ G++ FAEL++ SGLV E V+W+TFHS YDF YL+K +T+ LP+
Sbjct: 128 TKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPA 187
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+EF +L ++F N YD+K+IM+ + GL +A L + R +G HQAGSD+LLT
Sbjct: 188 EYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLT 245
Query: 263 WHAFQKIRDVYFVHDGPEKHAGVLYGL 289
F +IR YF + LYGL
Sbjct: 246 ARIFFEIRSRYFDGSIDSRMLNQLYGL 272
>pdb|4B8A|B Chain B, Structure Of Yeast Not1 Mif4g Domain Co-Crystallized With
Caf1
Length = 286
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 36/286 (12%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K HY+ +
Sbjct: 14 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARP------IGTFRS-KVDYHYQTM 66
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
++NVD LN IQ+GL+LSD++GN PD G W+FNF +FD + + +S+ELLR
Sbjct: 67 RANVDFLNPIQLGLSLSDANGNKPDNGPS-----TWQFNF-EFDPKKEIMSTESLELLRK 120
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S+P+
Sbjct: 121 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 180
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYG---------------GLDRVARTLDVSRAV 249
++F + + N YD+ + + Q L +A L + R
Sbjct: 181 EDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPR-F 238
Query: 250 GKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-----KHAGVLYGLE 290
G SLL +F ++ + +H P K+ GV+YG++
Sbjct: 239 SIFTTTGGQSLLMLLSFCQLSKLS-MHKFPNGTDFAKYQGVIYGID 283
>pdb|4B8C|A Chain A, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|C Chain C, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|E Chain E, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|F Chain F, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 288
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 36/286 (12%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K HY+ +
Sbjct: 16 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTM 68
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
++NVD LN IQ+GL+LSD++GN PD G W+FNF +FD + + +S+ELLR
Sbjct: 69 RANVDFLNPIQLGLSLSDANGNKPDNGPS-----TWQFNF-EFDPKKEIMSTESLELLRK 122
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S+P+
Sbjct: 123 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 182
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYG---------------GLDRVARTLDVSRAV 249
++F + + N YD+ + + Q L +A L + R
Sbjct: 183 EDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPR-F 240
Query: 250 GKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-----KHAGVLYGLE 290
G SLL +F ++ + +H P K+ GV+YG++
Sbjct: 241 SIFTTTGGQSLLMLLSFCQLSKLS-MHKFPNGTDFAKYQGVIYGID 285
>pdb|1UOC|A Chain A, X-Ray Structure Of The Rnase Domain Of The Yeast Pop2
Protein
pdb|1UOC|B Chain B, X-Ray Structure Of The Rnase Domain Of The Yeast Pop2
Protein
Length = 289
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 36/286 (12%)
Query: 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVL 84
R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K HY+ +
Sbjct: 17 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTM 69
Query: 85 KSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRL 144
++NVD LN IQ+GL+LSD++GN PD G W+FNF +FD + + +S+ELLR
Sbjct: 70 RANVDFLNPIQLGLSLSDANGNKPDNGPS-----TWQFNF-EFDPKKEIMSTESLELLRK 123
Query: 145 QGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 204
GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S+P+
Sbjct: 124 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 183
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYG---------------GLDRVARTLDVSRAV 249
++F + + N YD+ + + Q L +A L + R
Sbjct: 184 EDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPR-F 241
Query: 250 GKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-----KHAGVLYGLE 290
G SLL +F ++ + +H P K+ GV+YG++
Sbjct: 242 SIFTTTGGQSLLMLLSFCQLSKLS-MHKFPNGTDFAKYQGVIYGID 286
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN +S + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDIATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + +PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + + G+
Sbjct: 111 SSIDFLASQGFDFNKVFRNGI 131
>pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 4 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGF---DTPEERYQKLK 60
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPD-------- 137
+ L Q GL + FNF F +PD
Sbjct: 61 KHSMDFLLFQFGLCAF-------KYDHTDSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSS 113
Query: 138 SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + G+
Sbjct: 114 SIDFLASQGFDFNKVFCSGI 133
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 151 RNRKE--GVDSVRFAELMMSSGLVCNESV--SWVTFHSAYDFGYLVKILT 196
RN +E G+D F + S + N+S S FH++YD Y++K +T
Sbjct: 88 RNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTIT 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,757,812
Number of Sequences: 62578
Number of extensions: 358932
Number of successful extensions: 683
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 9
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)