BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022773
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/281 (72%), Positives = 236/281 (83%), Gaps = 6/281 (2%)
Query: 13 NSNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYF 72
S + S+ I+IR+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D
Sbjct: 3 KSEADLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VL 57
Query: 73 RQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATD 132
R+ P+ Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG N ++IWEFNFRDFD+ D
Sbjct: 58 RRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERD 117
Query: 133 AHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 192
HAPDSIELLR GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLV
Sbjct: 118 PHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLV 177
Query: 193 KILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVGK 251
KILTRR LP L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V+RAVGK
Sbjct: 178 KILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGK 237
Query: 252 CHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 292
CHQAGSDSLLTW AFQ++RD+YFV DG EKHAGVLYGLEV+
Sbjct: 238 CHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/273 (73%), Positives = 232/273 (84%), Gaps = 9/273 (3%)
Query: 21 SIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH 80
+++ REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D
Sbjct: 16 TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDL 67
Query: 81 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIE 140
Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG + FIWEFNFRDFD+A DAHAPDSIE
Sbjct: 68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIE 127
Query: 141 LLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSL 200
LLR QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR L
Sbjct: 128 LLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRREL 187
Query: 201 PSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVARTLDVSRAVGKCHQAGSDS 259
P L EF V+RV FG +YDVKH+M+FC+ L+GGLDRVARTL+V+RAVGKCHQAGSDS
Sbjct: 188 PGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDS 247
Query: 260 LLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 292
LLTWHAFQ++RD+YFV DGPEKHAGVLYGLEV+
Sbjct: 248 LLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 200/273 (73%), Gaps = 13/273 (4%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
+SI IREVW NLESE LI +V+D +PF++MDTEFPG+V RP T +
Sbjct: 8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY------- 60
Query: 80 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDS 138
HY+ LK+NV+ L +IQ+GLT SD GNLP G+ +NK+ IW+FNFR+FD+ +D +A DS
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDS 118
Query: 139 IELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRR 198
IELLR GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT +
Sbjct: 119 IELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQ 178
Query: 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSD 258
+LP F ++ V+F +YD+KH+M+FC SL+GGL+++A LDV R VG CHQAGSD
Sbjct: 179 NLPETQTGFFEMISVYFP-RVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSD 236
Query: 259 SLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 291
SLLT F+K+++ +F+ EK++GVLYGL V
Sbjct: 237 SLLTSCTFRKLQENFFI-GSMEKYSGVLYGLGV 268
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 286 bits (733), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 198/279 (70%), Gaps = 14/279 (5%)
Query: 14 SNSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFR 73
+ + +SI+IREVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y
Sbjct: 2 AETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKY-- 56
Query: 74 QRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATD 132
+Y+ LK NVD L LIQVGLT SD +GNLP G+ +KF IW+FNFR+F+I D
Sbjct: 57 --NNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGED 111
Query: 133 AHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 192
+A +SIELLR GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH YDFGYLV
Sbjct: 112 IYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLV 171
Query: 193 KILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKC 252
K+LT + LP +F +L V+F +YD+KH+M FC L+GGL+R+A + V R VG C
Sbjct: 172 KLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGIC 229
Query: 253 HQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 291
HQAGSDSLLT +F+K+++ YF EK+ GVLYGL V
Sbjct: 230 HQAGSDSLLTLGSFRKLKERYF-PGSTEKYTGVLYGLGV 267
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 281 bits (719), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/274 (52%), Positives = 196/274 (71%), Gaps = 16/274 (5%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPS 78
+SI IREVW NL+ E +LI V+D +P+++MDTEFPG+V RP S Y
Sbjct: 8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY------- 60
Query: 79 DHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDS 138
HY+ LK+NV+ L +IQ+GLT S+ GNLP G+ + IW+FNFR+FD+ +D A DS
Sbjct: 61 -HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDS 117
Query: 139 IELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRR 198
IELL+ GID +N +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT +
Sbjct: 118 IELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQ 177
Query: 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSD 258
+LP +F ++ V+F +YD+KH+M+FC SL+GGL+++A L+V R VG CHQAGSD
Sbjct: 178 NLPDSQTDFFKLINVYFP-TVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSD 235
Query: 259 SLLTWHAFQKIRDVYFVHDGP-EKHAGVLYGLEV 291
SLLT F+K+++ +FV GP K++GVLYGL V
Sbjct: 236 SLLTSCTFRKLKENFFV--GPLHKYSGVLYGLGV 267
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/276 (49%), Positives = 187/276 (67%), Gaps = 16/276 (5%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPS 78
++I IREVW NLE E LI Q ID +P+++MDTEFPG+V + +P+ PY S
Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPY------S 65
Query: 79 DHYK----VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAH 134
HY+ LK+NV+ L LIQ+GLTLSD GNLP G+ N + IW+FNFR+F++ +D
Sbjct: 66 IHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMF 123
Query: 135 APDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKI 194
A DSIELLR ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH YDFGYL+K+
Sbjct: 124 ALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKL 183
Query: 195 LTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQ 254
L+ + LP + +F + FF +YD+K++M FC +LYGGL+++A L V R VG HQ
Sbjct: 184 LSGKELPEEISDFFDQMEKFFP-VVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQ 241
Query: 255 AGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLE 290
AGSDSLLT F K+++ +F K++G L+GL+
Sbjct: 242 AGSDSLLTLRTFIKMKEFFFT-GSLLKYSGFLFGLD 276
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 176/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 EELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 176/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 EELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 176/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 EELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 176/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 EELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 231 bits (588), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 183/274 (66%), Gaps = 23/274 (8%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
NS +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D
Sbjct: 8 NSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSID 59
Query: 80 H-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDS 138
+ Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DS
Sbjct: 60 YQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDS 112
Query: 139 IELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRR 198
I+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT
Sbjct: 113 IDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDS 172
Query: 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSD 258
LP EF +L +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSD
Sbjct: 173 RLPEEEHEFFHILNLFFP-SIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSD 230
Query: 259 SLLTWHAFQKIRDVYF---VHDGPEKHAGVLYGL 289
SLLT AF ++++++F + D K+ G LYGL
Sbjct: 231 SLLTGMAFFRMKELFFEDSIDDA--KYCGRLYGL 262
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 183/274 (66%), Gaps = 23/274 (8%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
NS +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D
Sbjct: 8 NSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSID 59
Query: 80 H-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDS 138
+ Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DS
Sbjct: 60 YQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDS 112
Query: 139 IELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRR 198
I+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT
Sbjct: 113 IDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDS 172
Query: 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSD 258
LP EF +L +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSD
Sbjct: 173 RLPEEEHEFFHILNLFFP-SIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSD 230
Query: 259 SLLTWHAFQKIRDVYF---VHDGPEKHAGVLYGL 289
SLLT AF ++++++F + D K+ G LYGL
Sbjct: 231 SLLTGMAFFRMKELFFEDSIDDA--KYCGRLYGL 262
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 175/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ + + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 VEQDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 175/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NLE E + I QV ++ +I+MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG++++ FAEL+M+SG+V E V W++FHS YDFGYL+KIL+ LP
Sbjct: 117 TSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPD 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 EEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 175/268 (65%), Gaps = 19/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YK 82
I EVWA NL+ + + I QVI +Y +++MDTEFPG+V RP R +D+ Y+
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQ 63
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL
Sbjct: 64 LLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELL 116
Query: 143 RLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPS 202
GI F+++ +EG+++ FAEL M+SG+V E V W++FHS YDFGYL+KILT +LP
Sbjct: 117 TSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPE 176
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT
Sbjct: 177 VELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLT 234
Query: 263 WHAFQKIRDVYFV-HDGPEKHAGVLYGL 289
AF K+R+++F H K+ G LYGL
Sbjct: 235 GMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 168/268 (62%), Gaps = 20/268 (7%)
Query: 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD--HY 81
IR+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP K SD HY
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARP---------LGVFKSSDDYHY 75
Query: 82 KVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIEL 141
+ L++NVD+L +IQ+GL LSD GN P W+FNF F++ D +AP+SIEL
Sbjct: 76 QTLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNFT-FNLQDDMYAPESIEL 128
Query: 142 LRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 201
L GIDF+++++ G++ FAEL++ SGLV E V+W+TFHS YDF YL+K +T+ LP
Sbjct: 129 LTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLP 188
Query: 202 SGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLL 261
+ +EF +L ++F N YD+K+IM+ + GL +A L + R +G HQAGSD+LL
Sbjct: 189 AEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALL 246
Query: 262 TWHAFQKIRDVYFVHDGPEKHAGVLYGL 289
T F +IR YF + LYGL
Sbjct: 247 TARIFFEIRSRYFDGSIDSRMLNQLYGL 274
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 146/257 (56%), Gaps = 20/257 (7%)
Query: 22 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHY 81
+ I V+ SN+E EF I ++ YP+++MDTEFPG+V P FR ++ ++
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQ 74
Query: 82 KVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIEL 141
+V NV+ L LIQVG + + G LP G +W+FNF +F A D + +S+E+
Sbjct: 75 QVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEM 126
Query: 142 LRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 201
LR GIDF + G+ + F EL+ +SGL+ + ++W+TF S YDFGYL+K +T LP
Sbjct: 127 LRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLP 186
Query: 202 SGLDEFLTVLRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGS 257
F + F + +D+K ++R C S L GGL VA LDV R G HQAGS
Sbjct: 187 KEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGS 244
Query: 258 DSLLTWHAFQKIRDVYF 274
D+LLT F KI+ +F
Sbjct: 245 DALLTAATFFKIKKQFF 261
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 36/291 (12%)
Query: 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSD 79
N + +R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K
Sbjct: 156 NYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FR-SKVDY 208
Query: 80 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSI 139
HY+ +++NVD LN IQ+GL+LSD++GN PD G W+FNF +FD + + +S+
Sbjct: 209 HYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS-----TWQFNF-EFDPKKEIMSTESL 262
Query: 140 ELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRS 199
ELLR GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S
Sbjct: 263 ELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDS 322
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG---------------GLDRVARTLD 244
+P+ ++F + + N YD+ + + Q L +A L
Sbjct: 323 MPNNKEDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELG 381
Query: 245 VSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPE-----KHAGVLYGLE 290
+ R G SLL +F ++ + +H P K+ GV+YG++
Sbjct: 382 LPR-FSIFTTTGGQSLLMLLSFCQLSKLS-MHKFPNGTDFAKYQGVIYGID 430
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 147/272 (54%), Gaps = 30/272 (11%)
Query: 23 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYK 82
+ R VW SN++ E +++ + R+P I+ DTE+PG+++R D S+ + Y+
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYR 58
Query: 83 VLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELL 142
+K NV+ LIQ G TL ++ G + GG +WE NF +F +D SIE L
Sbjct: 59 AMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFL 109
Query: 143 RLQGIDFERNRKEGVDSVR---FAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRS 199
R G+D ++ R EGVD F +LM + + V +VTF AYDF Y + IL
Sbjct: 110 RRHGLDLQKIRDEGVDMFGYGFFPKLM--TVFRSQKHVEFVTFQGAYDFAYFLSILNHGK 167
Query: 200 LPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGS 257
LP EF T + FG +YD K + FC+ L + GL ++A+ L ++R VG+ H AGS
Sbjct: 168 LPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGS 225
Query: 258 DSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 289
DSL+T F K++ VY + G++YG+
Sbjct: 226 DSLMTALVFIKLKHVY---EDSRFARGLIYGI 254
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 119/249 (47%), Gaps = 29/249 (11%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N ++E I + I++DTEFPG + +D S +R +K
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD---------MK 54
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQ 145
NVD +LIQ+GLTL G G WE N DF+ + SI L+
Sbjct: 55 FNVDNTHLIQLGLTL---------FGKGITK--TWEINLSDFNESKSLKNDKSIAFLKNN 103
Query: 146 GIDFERNRKEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPS 202
G+D ++ R+EG+ E M + NE + WVTF +YD YL+K LTR+ LP
Sbjct: 104 GLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPE 160
Query: 203 GLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSL 260
EF ++ G +YDVK + C L GL R+A L + R VGK H AGSDS
Sbjct: 161 TSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRR-VGKAHHAGSDSE 219
Query: 261 LTWHAFQKI 269
LT F K+
Sbjct: 220 LTARVFTKL 228
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 113/247 (45%), Gaps = 23/247 (9%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N E E I + I++DTEFPG + +D S +R +K
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRD---------MK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQ 145
NVD +LIQ+G TL D G WE N DFD SI L+
Sbjct: 59 FNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSN 108
Query: 146 GIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGL 204
G++ ++ R+EG+ F + ++WV F +YD YLVK LT + LP
Sbjct: 109 GLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETK 168
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+EF ++ G ++DVK I C L GL R+A L + R VGK H AGSDS LT
Sbjct: 169 EEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELT 227
Query: 263 WHAFQKI 269
F K+
Sbjct: 228 ARVFTKL 234
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 38 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVG 97
LI + Y FI++DTEFP + R + + Y + +VD LIQ+G
Sbjct: 3 LIEDCLRSYRFIAIDTEFP---------STLRETTQHATDEERYMDMSFSVDRAKLIQLG 53
Query: 98 LTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGV 157
LTL D +G + GG WE NF DF + DA SIE LR G+D + R+EG+
Sbjct: 54 LTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGI 103
Query: 158 DSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGN 217
F M +++WVTFH +YD YL+K T +LP + F + G
Sbjct: 104 RIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG- 162
Query: 218 NIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 269
++YD+K + C+ L GL+ +A ++R VG H AGS++ LT F K+
Sbjct: 163 SVYDLKVMAGRCEGLSSRLGLETLAHEFGLNR-VGTAHHAGSNNELTAMVFAKV 215
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 113/247 (45%), Gaps = 23/247 (9%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
EVW N E E + I + + I++DTEFPG + +D S +R +K
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRD---------MK 53
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQ 145
NVD +LIQ+G TL D G WE N DF+ SI L+
Sbjct: 54 FNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSN 103
Query: 146 GIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGL 204
G++ ++ +EG+ F + ++WV F +YD YLVK LT + LP
Sbjct: 104 GLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETK 163
Query: 205 DEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLT 262
+EF + G ++DVK I C L GL R+A L + R VGK H AGSDS LT
Sbjct: 164 EEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELT 222
Query: 263 WHAFQKI 269
F K+
Sbjct: 223 ARVFTKL 229
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN +S + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDIATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + +PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + + G+
Sbjct: 111 SSIDFLASQGFDFNKVFRNGI 131
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN +S + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDIATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + +PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSSPDVKFVCQS 110
Query: 138 -SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + + G+
Sbjct: 111 SSIDFLASQGFDFNKVFRNGI 131
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDIATDAHAPD------- 137
+ L Q GL ++K+I + FNF F + PD
Sbjct: 59 KHSMDFLLFQFGLCTFKYDYT--------DSKYITKSFNFYVFPKPFNRSPPDVKFVCQS 110
Query: 138 -SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + + G+
Sbjct: 111 SSIDFLASQGFDFNKVFRNGI 131
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + + I+ F+++D EF G+ P V T + P + Y LK
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGF---DTPEERYTKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWE-FNFRDFDIATDAHAPD------- 137
+ L Q GL + K++ + FNF F + ++PD
Sbjct: 59 KHSMEFLLFQFGLCTFNYDNT--------EAKYLMKSFNFYIFPKPFNRNSPDKKFVCQS 110
Query: 138 -SIELLRLQGIDFERNRKEGV 157
SI+ L QG DF + + G+
Sbjct: 111 SSIDFLANQGFDFNKVFRNGI 131
>sp|Q7MIS5|FADJ_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain YJ016) GN=fadJ PE=3 SV=1
Length = 705
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 111 GSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEG--VDSVRFAELMMS 168
GSG KF++E + T + P ++ +L++ E+ K+G +++ RF EL+MS
Sbjct: 222 GSGLGRKFVFEQAAKKTHEKTRGNYPATVAILQVIQHGLEKGMKQGLELEAKRFGELVMS 281
Query: 169 SGLVCNESVSWVTFHSAYDFGYLVK 193
+ S+ + T + G K
Sbjct: 282 NESKALRSIFFATTEMKKETGSEAK 306
>sp|Q8DB47|FADJ_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain CMCP6) GN=fadJ PE=3 SV=1
Length = 705
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 111 GSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEG--VDSVRFAELMMS 168
GSG KF++E + T + P ++ +L++ E+ K+G +++ RF EL+MS
Sbjct: 222 GSGLGRKFVFEQAAKKTHEKTRGNYPATVAILQVIQHGLEKGMKQGLELEAKRFGELVMS 281
Query: 169 SGLVCNESVSWVTFHSAYDFGYLVK 193
+ S+ + T + G K
Sbjct: 282 NESKALRSIFFATTEMKKETGSEAK 306
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 191 LVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVG 250
+++ + SL SGL+ F+T L++ GNN+ +K C + GL+R L+V++ +
Sbjct: 1 MIQRINALSLSSGLNWFVTSLKI-HGNNLKTLKQ--SHCYMIITGLNR--DNLNVAKFIE 55
Query: 251 KCHQAG 256
C AG
Sbjct: 56 ACSNAG 61
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 26 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLK 85
E+ SN + + Q I+ F ++D EF G+ P V T + P + Y+ LK
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGF---DTPEERYQKLK 58
Query: 86 SNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPD-------- 137
+ L Q GL + FNF F +PD
Sbjct: 59 KHSMDFLLFQFGLCAF-------KYDHTDSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSS 111
Query: 138 SIELLRLQGIDFER 151
SI+ L QG DF +
Sbjct: 112 SIDFLASQGFDFNK 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,530,759
Number of Sequences: 539616
Number of extensions: 4662329
Number of successful extensions: 10301
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10184
Number of HSP's gapped (non-prelim): 36
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)