Query 022773
Match_columns 292
No_of_seqs 147 out of 504
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 1E-88 3.4E-93 631.3 23.3 256 20-291 8-264 (285)
2 1uoc_A POP2; hydrolase, DEDD n 100.0 3.3E-88 1.1E-92 627.6 25.3 263 15-292 7-288 (289)
3 2d5r_A CCR4-NOT transcription 100.0 2.3E-88 7.9E-93 618.8 23.5 251 23-289 1-252 (252)
4 2p51_A SPCC18.06C protein; DED 100.0 5.9E-88 2E-92 633.6 25.8 257 19-291 18-274 (333)
5 3d45_A Poly(A)-specific ribonu 100.0 7.9E-61 2.7E-65 475.9 20.7 252 24-287 2-418 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 2.2E-53 7.6E-58 414.8 19.4 238 25-274 1-398 (430)
7 1w0h_A 3'-5' exonuclease ERI1; 98.8 5E-07 1.7E-11 78.0 18.1 175 47-275 11-197 (204)
8 3v9w_A Ribonuclease T; DEDD nu 98.7 1.5E-07 5E-12 83.5 12.9 189 35-275 26-223 (235)
9 1zbh_A 3'-5' exonuclease ERI1; 98.6 2.2E-06 7.5E-11 79.2 17.3 175 46-274 78-264 (299)
10 2f96_A Ribonuclease T; RNAse, 98.6 1.1E-06 3.7E-11 77.4 14.0 186 39-275 22-215 (224)
11 2xri_A ERI1 exoribonuclease 3; 98.5 1.1E-05 3.9E-10 71.1 18.2 171 47-273 32-214 (224)
12 1zbu_A ERI-1 homolog, 3'-5' ex 98.4 4.7E-06 1.6E-10 78.9 15.2 176 46-274 128-314 (349)
13 2gui_A DNA polymerase III epsi 98.4 2.2E-06 7.5E-11 73.5 11.6 172 46-272 9-184 (194)
14 2p1j_A POLIII, DNA polymerase 98.4 6.4E-06 2.2E-10 70.5 13.5 164 43-272 9-175 (186)
15 3mxm_B Three prime repair exon 98.3 4.7E-06 1.6E-10 74.7 12.2 180 47-275 13-217 (242)
16 3cg7_A CRN-4, cell death-relat 98.3 1.8E-05 6.1E-10 73.5 15.9 173 47-273 20-209 (308)
17 1y97_A Three prime repair exon 98.2 1.4E-05 4.8E-10 70.6 12.8 179 46-274 10-211 (238)
18 2qxf_A Exodeoxyribonuclease I; 98.2 1.4E-05 4.9E-10 78.7 12.7 177 43-272 6-200 (482)
19 1wlj_A Interferon stimulated g 98.0 2.5E-05 8.6E-10 67.0 9.2 158 45-275 4-171 (189)
20 2igi_A Oligoribonuclease; RNAs 98.0 0.00014 4.7E-09 61.4 13.5 170 45-275 4-179 (180)
21 3u3y_B Three prime repair exon 97.9 7.7E-05 2.6E-09 69.7 12.1 182 47-275 13-217 (314)
22 2gbz_A Oligoribonuclease; ORN, 97.6 0.00051 1.7E-08 59.0 11.5 172 44-275 7-183 (194)
23 3tr8_A Oligoribonuclease; tran 97.5 0.0027 9.2E-08 54.7 14.5 169 44-275 7-183 (186)
24 2kfn_A Klenow fragment of DNA 95.2 0.49 1.7E-05 47.4 15.7 84 173-273 87-193 (605)
25 2hbj_A Exosome complex exonucl 53.3 40 0.0014 31.8 8.1 86 173-275 156-256 (410)
26 1yt3_A Ribonuclease D, RNAse D 37.4 98 0.0034 28.4 8.0 85 174-275 72-172 (375)
27 3saf_A Exosome component 10; e 34.2 98 0.0034 29.4 7.5 85 174-275 180-279 (428)
28 2i52_A Hypothetical protein; s 29.2 22 0.00076 28.3 1.7 44 181-224 19-65 (121)
29 4g3h_A Arginase (ROCF); rossma 28.8 69 0.0024 29.3 5.2 62 29-99 209-280 (330)
30 2ogf_A Hypothetical protein MJ 27.7 25 0.00085 28.0 1.7 44 181-224 24-70 (122)
31 4i4d_A Peptide synthetase NRPS 26.8 77 0.0026 22.8 4.3 36 238-274 24-62 (93)
32 2cg5_B Fatty acid synthase; tr 24.6 90 0.0031 23.1 4.3 38 236-273 12-54 (91)
33 2fi0_A Conserved domain protei 24.5 59 0.002 23.4 3.2 37 135-171 22-75 (81)
34 1dny_A Non-ribosomal peptide s 24.0 75 0.0026 22.9 3.7 36 238-274 22-60 (91)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-88 Score=631.27 Aligned_cols=256 Identities=48% Similarity=0.846 Sum_probs=246.2
Q ss_pred CCcEEEEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeee
Q 022773 20 NSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLT 99 (292)
Q Consensus 20 ~~~~v~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt 99 (292)
.+.+|||||++||++||+.|+++|++|+||||||||||++++|.+.+ .+++|+||+++|+|||.+++||+|||
T Consensus 8 ~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~-------~~t~d~~Y~~lr~nvd~l~iIQlGLt 80 (285)
T 4gmj_B 8 HSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEF-------RSNADYQYQLLRCNVDLLKIIQLGLT 80 (285)
T ss_dssp --CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCC-------TTSTTHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCcc-------CCCHHHHHHHHHHHHHhhcceeEEEE
Confidence 45679999999999999999999999999999999999999998887 88999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCeeEEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcce
Q 022773 100 LSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSW 179 (292)
Q Consensus 100 ~~~~~g~~p~~g~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~w 179 (292)
+|+++|+.|. .+++|||||+ |++.+|+|+++||+||++|||||||+.++|||+..|+|++++||++++++++|
T Consensus 81 ~f~~~g~~p~------~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~W 153 (285)
T 4gmj_B 81 FMNEQGEYPP------GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKW 153 (285)
T ss_dssp EECTTSCCCS------SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEE
T ss_pred eeccCCCcCC------CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCce
Confidence 9999999884 5789999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhH
Q 022773 180 VTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDS 259 (292)
Q Consensus 180 v~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS 259 (292)
|+|||+|||+||+|+|+|++||+++.+|+++++.+| |.|||||||++.|.++++||++||+.|+|+| +|++|||||||
T Consensus 154 vtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~F-P~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r-~g~~HqAGsDS 231 (285)
T 4gmj_B 154 LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDS 231 (285)
T ss_dssp EESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC-SCEEEHHHHGGGSTTCCSCHHHHHHHTTCCC-CSCTTSHHHHH
T ss_pred EEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHC-chhhhHHHHHHhccccCChHHHHHHhCCCCC-CCCCCcchhHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-CccccceEeccCC
Q 022773 260 LLTWHAFQKIRDVYFVHDG-PEKHAGVLYGLEV 291 (292)
Q Consensus 260 ~lT~~~F~~l~~~~~~~~~-~~~~~g~i~Gl~~ 291 (292)
|||++||++|+++||++.+ .++|+|+|||||+
T Consensus 232 llT~~~F~kl~~~~f~~~~~~~~~~g~l~Glg~ 264 (285)
T 4gmj_B 232 LLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGS 264 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHhcCCcchHHhCCEEeccCC
Confidence 9999999999999998654 5689999999985
No 2
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=3.3e-88 Score=627.61 Aligned_cols=263 Identities=36% Similarity=0.665 Sum_probs=239.2
Q ss_pred CCCCCCCcEEEEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccce
Q 022773 15 NSSSSNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLI 94 (292)
Q Consensus 15 ~~~~~~~~~v~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~ii 94 (292)
..+++..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+ .+++++||+++|+|||.+++|
T Consensus 7 ~~p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f-------~~~~d~~Yq~lr~nVd~l~iI 79 (289)
T 1uoc_A 7 FLPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTF-------RSKVDYHYQTMRANVDFLNPI 79 (289)
T ss_dssp CCCCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC-----------------CHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCccc-------CCCHHHHHHHHHHhhhhccce
Confidence 3444557999999999999999999999999999999999999999998776 567899999999999999999
Q ss_pred eeeeeeecCCCCCCCCCCCCCCeeEEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCcccc
Q 022773 95 QVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCN 174 (292)
Q Consensus 95 QlGLt~~~~~g~~p~~g~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~ 174 (292)
|+|||+++++|+.|.. .+++|||||+ |++.+|+|+++||+||+++||||||+.++||||..|+|+|++||||++
T Consensus 80 QlGLt~~~~~g~~p~~-----~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~ 153 (289)
T 1uoc_A 80 QLGLSLSDANGNKPDN-----GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMD 153 (289)
T ss_dssp EEEEEEECTTCCCCSS-----SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSC
T ss_pred EEEEEEEccCCCcCCC-----CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccC
Confidence 9999999999999852 4789999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccc---------------hHHHH
Q 022773 175 ESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG---------------GLDRV 239 (292)
Q Consensus 175 ~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~---------------~L~~l 239 (292)
++++||+|||+||||||+|+|++++||+++.+|.++|+.+| |.|||||||++.|.++++ ||++|
T Consensus 154 ~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F-P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~l 232 (289)
T 1uoc_A 154 DSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM-PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTL 232 (289)
T ss_dssp TTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC-SSEEEHHHHHHHHTTTCC-------------CCSHHHH
T ss_pred CCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhC-ccceeHHHHHHHHHhccCcccccccccccccCCCHHHH
Confidence 99999999999999999999999999999999999999999 999999999999988766 69999
Q ss_pred HHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhcC----CCCCccccceEeccCCC
Q 022773 240 ARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV----HDGPEKHAGVLYGLEVY 292 (292)
Q Consensus 240 a~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~~----~~~~~~~~g~i~Gl~~~ 292 (292)
|+.|||+| +|++|||||||++|++||+||++.++. +.+.++++|+||||+.+
T Consensus 233 A~~L~v~r-~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 233 ADELGLPR-FSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp HHHTTCCC-CGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred HHHcCCCc-cCcccccHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 99999999 999999999999999999999999873 22478999999999874
No 3
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=2.3e-88 Score=618.81 Aligned_cols=251 Identities=49% Similarity=0.864 Sum_probs=242.7
Q ss_pred EEEEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeec
Q 022773 23 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSD 102 (292)
Q Consensus 23 ~v~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~ 102 (292)
.|||||++||++||+.|+++|++|+||||||||||++++|.+.+ .+++++|||++|+|||.+++||+|||+++
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f-------~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~ 73 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEF-------RSNADYQYQLLRCNVDLLKIIQLGLTFMN 73 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCC-------SSHHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCC-------CCCHHHHHHHHHHhhhhcceeEEEEEEEc
Confidence 48999999999999999999999999999999999999998776 67899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeeEEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcceEEe
Q 022773 103 SSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTF 182 (292)
Q Consensus 103 ~~g~~p~~g~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wv~f 182 (292)
++|+.|. .+++|||||+ |++.+|+|+++||+||+++||||||+.++|||+..|+|+|++|||+++++++||+|
T Consensus 74 ~~g~~p~------~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witf 146 (252)
T 2d5r_A 74 EQGEYPP------GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSF 146 (252)
T ss_dssp TTSCCCS------SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEES
T ss_pred cCCCCCC------CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEe
Confidence 9999884 4789999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHH
Q 022773 183 HSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLT 262 (292)
Q Consensus 183 hg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT 262 (292)
||+||||||+|+|+|++||+++.+|.++++.+| |+|||||||++.|.++++||++||+.|+++| +|++|||||||++|
T Consensus 147 hg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~F-P~iyD~K~l~~~~~~l~~gL~~la~~L~v~r-~g~~HqAGsDsllT 224 (252)
T 2d5r_A 147 HSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLT 224 (252)
T ss_dssp SCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC-SCEEEHHHHGGGCTTCCSSHHHHHHHHTCCC-CSSTTSHHHHHHHH
T ss_pred cCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHC-cchhhHHHHHHHhcccCCCHHHHHHHcCCCc-cCcccchhhhHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhcCCCC-CccccceEecc
Q 022773 263 WHAFQKIRDVYFVHDG-PEKHAGVLYGL 289 (292)
Q Consensus 263 ~~~F~~l~~~~~~~~~-~~~~~g~i~Gl 289 (292)
++||+||++.++++.+ .++++|+||||
T Consensus 225 ~~~F~km~~~~f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 225 GMAFFKMREMFFEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp HHHHHHHHHHTSCSSCCHHHHTTBCTTC
T ss_pred HHHHHHHHHHhcCCCCCHHHcCCEecCC
Confidence 9999999999998654 57999999997
No 4
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=5.9e-88 Score=633.65 Aligned_cols=257 Identities=46% Similarity=0.799 Sum_probs=247.0
Q ss_pred CCCcEEEEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeee
Q 022773 19 SNSIIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGL 98 (292)
Q Consensus 19 ~~~~~v~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGL 98 (292)
+..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+ .++.++|||++|+|||.+++||+||
T Consensus 18 ~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f-------~~~~e~~Yq~lR~NVd~l~iIQlGL 90 (333)
T 2p51_A 18 SQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVF-------KSSDDYHYQTLRANVDSLKIIQIGL 90 (333)
T ss_dssp CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCC-------SSSHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeecccccccccccc-------CCCHHHHHHHHHHhhhhccceEEEE
Confidence 557889999999999999999999999999999999999999998776 6678999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCeeEEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcc
Q 022773 99 TLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVS 178 (292)
Q Consensus 99 t~~~~~g~~p~~g~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~ 178 (292)
|+++++|+.|. .+++|||||+ |++.+|+|+++||+||+++||||||+.++|||+..|+|+|++||||++++++
T Consensus 91 t~fd~~G~~p~------~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~ 163 (333)
T 2p51_A 91 ALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVT 163 (333)
T ss_dssp EEECTTSCCCT------TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCE
T ss_pred EEEccCCCCCC------CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCce
Confidence 99999999984 4899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhh
Q 022773 179 WVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSD 258 (292)
Q Consensus 179 wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsD 258 (292)
||+|||+||||||+|+|+|++||+++.+|+++|+.+| |.|||||||++.|.++++||++||+.|+++| +|++||||||
T Consensus 164 Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~F-P~iYD~K~l~~~~~~l~ggL~~lA~~L~v~R-ig~~HqAGsD 241 (333)
T 2p51_A 164 WITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYF-PKNYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSD 241 (333)
T ss_dssp EEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHS-SSEEEHHHHHTTTTCCCCCHHHHHHHTTCCC-CSCTTSHHHH
T ss_pred EEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHC-cchhhHHHHHHHhccccCCHHHHHHHcCCCc-cCcchhhhhH
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccceEeccCC
Q 022773 259 SLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 291 (292)
Q Consensus 259 S~lT~~~F~~l~~~~~~~~~~~~~~g~i~Gl~~ 291 (292)
||||++||+||++.++++.+.++++|+||||++
T Consensus 242 SlLT~~~F~kl~~~~f~~~~~~~~~g~l~Gl~~ 274 (333)
T 2p51_A 242 ALLTARIFFEIRSRYFDGSIDSRMLNQLYGLGS 274 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCGGGTTCCTTC--
T ss_pred HHHHHHHHHHHHHHhcCCCchhhhCCEEeccCc
Confidence 999999999999999986678899999999985
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.9e-61 Score=475.86 Aligned_cols=252 Identities=23% Similarity=0.314 Sum_probs=206.4
Q ss_pred EEEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC
Q 022773 24 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS 103 (292)
Q Consensus 24 v~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~ 103 (292)
|+|||++||+++|+.|+++|++|+||||||||||++.+|.+..... ..+++++||+++|+||+.+++||+|||+|++
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~---~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~ 78 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTS---GFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 78 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------C---BSCCHHHHHHHHHHHHTTBCEEEEEEEEEEE
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCcccccc---ccCCHHHHHHHHHHHHHhcccceEEEEEEec
Confidence 6899999999999999999999999999999999998875431000 1678999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeeEEEEeecccCC-----CCC---CCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHH--------
Q 022773 104 SGNLPDLGSGGNNKFIWEFNFRDFDI-----ATD---AHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMM-------- 167 (292)
Q Consensus 104 ~g~~p~~g~~~~~~~~w~FNF~~F~~-----~~d---~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~-------- 167 (292)
+|+.+ .|++|||||++||. ..| +|+++||+||++||||||+++++||||.+++|...
T Consensus 79 ~~~~~-------~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~ 151 (507)
T 3d45_A 79 DHTDS-------KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEK 151 (507)
T ss_dssp CSSSS-------CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC-
T ss_pred CCCCC-------ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhh
Confidence 99865 59999999999987 444 99999999999999999999999999999887542
Q ss_pred ---HcC-------------------------------------cc---cc------------------------------
Q 022773 168 ---SSG-------------------------------------LV---CN------------------------------ 174 (292)
Q Consensus 168 ---~Sg-------------------------------------lv---~~------------------------------ 174 (292)
.+| +. ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~ 231 (507)
T 3d45_A 152 RSQANGAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKE 231 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcc
Confidence 111 11 00
Q ss_pred -------------------------------------------CCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHH
Q 022773 175 -------------------------------------------ESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVL 211 (292)
Q Consensus 175 -------------------------------------------~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l 211 (292)
.+..||.+|+.+||+||++.|+ +|||+++.+|++.+
T Consensus 232 ~~i~v~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i 310 (507)
T 3d45_A 232 RHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMA 310 (507)
T ss_dssp --------------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHH
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHH
Confidence 0345777777899999999999 89999999999999
Q ss_pred HhhcCCcccchHHHHHh--hhhc--cchHHHHHHHcCC-----CC------------CCCCCccchhhHHHHHHHHHHHH
Q 022773 212 RVFFGNNIYDVKHIMRF--CQSL--YGGLDRVARTLDV-----SR------------AVGKCHQAGSDSLLTWHAFQKIR 270 (292)
Q Consensus 212 ~~~F~P~iyDtK~la~~--~~~l--~~~L~~la~~L~v-----~r------------~~g~~HqAGsDS~lT~~~F~~l~ 270 (292)
+.+| |.|||||||++. +.++ .++|+.|++.|+. ++ ..++.||||||||||+.||++|+
T Consensus 311 ~~lF-P~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~ 389 (507)
T 3d45_A 311 ICVF-PRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 389 (507)
T ss_dssp HHHC-SCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHhC-CceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999 999999999998 4454 6789999999973 33 14678999999999999999999
Q ss_pred HHhcC----C--------CCCccccceEe
Q 022773 271 DVYFV----H--------DGPEKHAGVLY 287 (292)
Q Consensus 271 ~~~~~----~--------~~~~~~~g~i~ 287 (292)
+.+.. . ..+..+.|+|+
T Consensus 390 ~~l~~~~~~~~~~~~~~~~~l~~~~N~l~ 418 (507)
T 3d45_A 390 NYLGSLLSPPKMCVSARSKLIEPFFNKLF 418 (507)
T ss_dssp HHHCC---------CCSCSSSGGGTTEEC
T ss_pred HHHhhccCCcccccccchhHHHhhheeee
Confidence 98751 0 11356888776
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=2.2e-53 Score=414.84 Aligned_cols=238 Identities=24% Similarity=0.330 Sum_probs=194.3
Q ss_pred EEeCccCHHHHHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCC
Q 022773 25 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS 104 (292)
Q Consensus 25 ~eV~~~Nf~eel~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~ 104 (292)
+|||++||.+.|+.|+++|++|+||||||||||++.+|....... ..+++++||+++|+||+.+++||+|||+|+++
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~---~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~ 77 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTN---GFDTPEERYQKLKKHSMDFLLFQFGLCTFKYD 77 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC--------CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEE
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccc---cCCCHHHHHHHHHHHHhhcceeeEEEEEEeec
Confidence 589999999999999999999999999999999998876321000 16789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeEEEEeecccCCC--------CCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHH------H----
Q 022773 105 GNLPDLGSGGNNKFIWEFNFRDFDIA--------TDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL------M---- 166 (292)
Q Consensus 105 g~~p~~g~~~~~~~~w~FNF~~F~~~--------~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~------l---- 166 (292)
|+.+ .|++|||||++||.. +++|+++||+||++||||||+++++||||.++.|. +
T Consensus 78 ~~~~-------~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~ 150 (430)
T 2a1r_A 78 YTDS-------KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKR 150 (430)
T ss_dssp TTTT-------EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC-------
T ss_pred CCCC-------ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhh
Confidence 9875 599999999999531 35899999999999999999999999999765422 0
Q ss_pred -----------H---H---------------------------------------cCc----c----c------------
Q 022773 167 -----------M---S---------------------------------------SGL----V----C------------ 173 (292)
Q Consensus 167 -----------~---~---------------------------------------Sgl----v----~------------ 173 (292)
. . +|. + .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~ 230 (430)
T 2a1r_A 151 SQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETL 230 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcccccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeee
Confidence 0 0 000 0 0
Q ss_pred -----------------------------------------------cCCcceEEeeCc-hhHHHHHHHhCCCCCCCCHH
Q 022773 174 -----------------------------------------------NESVSWVTFHSA-YDFGYLVKILTRRSLPSGLD 205 (292)
Q Consensus 174 -----------------------------------------------~~~~~wv~fhg~-yD~~yL~k~l~~~~LP~~~~ 205 (292)
.++-++|+.||+ +|+.|+++.|. +|||+++.
T Consensus 231 ~~~~~~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~-~pLP~~~~ 309 (430)
T 2a1r_A 231 ETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY-CPLPADLS 309 (430)
T ss_dssp --------------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CCCCSSHH
T ss_pred eecCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhc-cCCCCCHH
Confidence 001124678877 99999999998 89999999
Q ss_pred HHHHHHHhhcCCcccchHHHHHhhh--hc--cchHHHHHHHcCCCC-----------------CCCCCccchhhHHHHHH
Q 022773 206 EFLTVLRVFFGNNIYDVKHIMRFCQ--SL--YGGLDRVARTLDVSR-----------------AVGKCHQAGSDSLLTWH 264 (292)
Q Consensus 206 ~F~~~l~~~F~P~iyDtK~la~~~~--~l--~~~L~~la~~L~v~r-----------------~~g~~HqAGsDS~lT~~ 264 (292)
+|++.++.+| |.|||||||++.++ .+ .++|+.+.+.|.-.. ..++.|+|||||||||.
T Consensus 310 eFk~~i~~lF-P~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~ 388 (430)
T 2a1r_A 310 EFKEMTTCVF-PRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGL 388 (430)
T ss_dssp HHHHHHHHHC-SSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHH
Confidence 9999999999 99999999998864 22 357999999885321 14678999999999999
Q ss_pred HHHHHHHHhc
Q 022773 265 AFQKIRDVYF 274 (292)
Q Consensus 265 ~F~~l~~~~~ 274 (292)
||++|++.+.
T Consensus 389 vFi~l~~~l~ 398 (430)
T 2a1r_A 389 CFISMANYLG 398 (430)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 7
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.78 E-value=5e-07 Score=78.01 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=113.2
Q ss_pred CceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC-CCCCCCCCCCCCCeeEEEEeec
Q 022773 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNFR 125 (292)
Q Consensus 47 ~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~-~g~~p~~g~~~~~~~~w~FNF~ 125 (292)
.||++|+|.||+.... . ...-.|||||...++. +|+ ..-.|+.+
T Consensus 11 ~~vviD~ETTGl~~~~-----------~-------------~~~~~Iieigav~~~~~~g~-----------i~~~f~~l 55 (204)
T 1w0h_A 11 YICIIDFEATCEEGNP-----------P-------------EFVHEIIEFPVVLLNTHTLE-----------IEDTFQQY 55 (204)
T ss_dssp EEEECCCEECCCTTCC-----------T-------------TSCCCEEEEEEEEEETTTCS-----------EEEEEEEE
T ss_pred EEEEEEEecCCcCCCC-----------C-------------CCCCcEEEEEEEEEECCCCE-----------EeeeeeeE
Confidence 5899999999975311 0 1234699999999985 564 23457766
Q ss_pred ccCCCC-CCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHH----HHcCccccCCcceEEeeCchhHH-HHHHHhC--C
Q 022773 126 DFDIAT-DAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELM----MSSGLVCNESVSWVTFHSAYDFG-YLVKILT--R 197 (292)
Q Consensus 126 ~F~~~~-d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l----~~Sglv~~~~~~wv~fhg~yD~~-yL~k~l~--~ 197 (292)
..+.. ....+.+.+. +|+.=..+. +|.+.....+.+ ....+ ..+....|++++.+|+. +|-+.+. |
T Consensus 56 -v~P~~~~~i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~ 129 (204)
T 1w0h_A 56 -VRPEINTQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSR 129 (204)
T ss_dssp -BCCSSSCSCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHT
T ss_pred -ECCCCCCccCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhC
Confidence 34333 2455555443 788876664 466665433332 22211 11222345555569997 8877654 2
Q ss_pred CCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhc---cchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhc
Q 022773 198 RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL---YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 274 (292)
Q Consensus 198 ~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l---~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~ 274 (292)
-++|. ++ ..++||+.+++..-.. ..+|+.+++.+|++. .|.+|.|-.|+..|+++|.+|.+...
T Consensus 130 ~~~p~-----------~~-~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 130 LKYPP-----------FA-KKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp CCCCG-----------GG-SEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcc-----------cc-cceEEHHHHHHHHhCCCCccchHHHHHHHcCCCC-CCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 33332 23 3577998887764222 247999999999998 67889999999999999999988753
Q ss_pred C
Q 022773 275 V 275 (292)
Q Consensus 275 ~ 275 (292)
.
T Consensus 197 ~ 197 (204)
T 1w0h_A 197 E 197 (204)
T ss_dssp C
T ss_pred e
Confidence 3
No 8
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.71 E-value=1.5e-07 Score=83.54 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=121.4
Q ss_pred HHHHHHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeec--CCCCCCCCCC
Q 022773 35 EFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSD--SSGNLPDLGS 112 (292)
Q Consensus 35 el~~I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~--~~g~~p~~g~ 112 (292)
++..+.+.++...||++|+|.||+... .-.|||||+..++ ++|+.
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~----------------------------~~~IieIgav~~~~~~~g~i----- 72 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK----------------------------TDALLEIAAITLKMDEQGWL----- 72 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT----------------------------TBCEEEEEEEEEEECTTSCE-----
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC----------------------------CCeEEEEEEEEEEEcCCCcc-----
Confidence 344466678889999999999997421 1258999999876 35542
Q ss_pred CCCCeeEEEEeecccCCC-CCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHc--Ccccc---CCcceEEeeCch
Q 022773 113 GGNNKFIWEFNFRDFDIA-TDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSS--GLVCN---ESVSWVTFHSAY 186 (292)
Q Consensus 113 ~~~~~~~w~FNF~~F~~~-~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--glv~~---~~~~wv~fhg~y 186 (292)
.....|+.+ .... .....+.+.+ -+|+.-......|.+.....+.+..- ..+.. ++..+|+++..+
T Consensus 73 ----~~~~~f~~~-v~P~~~~~i~~~~~~---i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~f 144 (235)
T 3v9w_A 73 ----MPDTTLHFH-VEPFVGANLQPEALA---FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANF 144 (235)
T ss_dssp ----EEEEEEEEE-BCCCTTCBCCHHHHH---HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHH
T ss_pred ----cccceEEEE-ECCCCCCCCCHHHHH---HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHH
Confidence 245677776 3433 3345555554 37887765667787766544333221 00000 233445555569
Q ss_pred hHHHHHHHhCCCCCCCCHHHHHHHHHhhcCC-cccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHHHHH
Q 022773 187 DFGYLVKILTRRSLPSGLDEFLTVLRVFFGN-NIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHA 265 (292)
Q Consensus 187 D~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P-~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~ 265 (292)
|+.+|.+.+....+|.. -|.+ .++||..+++.+-. .-+|+.+++.+|++...+..|.|..|+..|+++
T Consensus 145 D~~~L~~~~~~~g~~~~----------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l 213 (235)
T 3v9w_A 145 DHSFMMAAAERASLKRN----------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVL 213 (235)
T ss_dssp HHHHHHHHHHHTTCCCC----------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC----------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHH
Confidence 99999777642222100 0101 46799988886532 247999999999987334789999999999999
Q ss_pred HHHHHHHhcC
Q 022773 266 FQKIRDVYFV 275 (292)
Q Consensus 266 F~~l~~~~~~ 275 (292)
|.+|.+++..
T Consensus 214 ~~~l~~~l~~ 223 (235)
T 3v9w_A 214 FCEIVNRWKR 223 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 9
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.58 E-value=2.2e-06 Score=79.17 Aligned_cols=175 Identities=13% Similarity=0.022 Sum_probs=115.0
Q ss_pred CCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC-CCCCCCCCCCCCCeeEEEEee
Q 022773 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNF 124 (292)
Q Consensus 46 ~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~-~g~~p~~g~~~~~~~~w~FNF 124 (292)
-.||+||+|.||+...+ +...-.|||||+..++. +|+ ..-.|+.
T Consensus 78 ~~~vviD~ETTGl~~~~------------------------~~~~~~IIeIgaV~v~~~~g~-----------i~~~f~~ 122 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP------------------------PEFVHEIIEFPVVLLNTHTLE-----------IEDTFQQ 122 (299)
T ss_dssp SEEEEECCEECCCTTCC------------------------TTCCCCEEEEEEEEEETTTCC-----------EEEEEEE
T ss_pred ceEEEEEeecccCCCCC------------------------CCCCCceEEEEEEEEECCCCe-----------Eeeeeee
Confidence 36899999999985321 11234599999999986 343 3456776
Q ss_pred cccCCCC-CCCChhHHHHHHHcCCChhhhhhcCCChHHHHHH----HHHcCccccCCcceEEeeCchhHH-HHHHHhC--
Q 022773 125 RDFDIAT-DAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL----MMSSGLVCNESVSWVTFHSAYDFG-YLVKILT-- 196 (292)
Q Consensus 125 ~~F~~~~-d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~----l~~Sglv~~~~~~wv~fhg~yD~~-yL~k~l~-- 196 (292)
+ ..... ....+.+.+. +||.=..+. +|.+.....+. +...++- .+....|++++.+|+. ||-+.+.
T Consensus 123 l-V~P~~~~~i~~~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~ 196 (299)
T 1zbh_A 123 Y-VRPEINTQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLS 196 (299)
T ss_dssp E-BCCSSSCSCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHT
T ss_pred e-ecCCCCCCCCHHHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHc
Confidence 6 33333 2455555544 788876654 56666553333 2222211 1123456666679999 9887653
Q ss_pred CCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhcc---chHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHh
Q 022773 197 RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLY---GGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVY 273 (292)
Q Consensus 197 ~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~---~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~ 273 (292)
|.++|. ++ ..++|++.+....-++. -+|+.+++.+|++. .|.+|.|-.|+..|+.+|.+|.+..
T Consensus 197 g~~~p~-----------~~-~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 197 RLKYPP-----------FA-KKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp TBCCCG-----------GG-SEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCc-----------cc-chHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCC-CCCCCChHHHHHHHHHHHHHHHHhC
Confidence 344442 23 35779987766542222 47999999999997 7788999999999999999998875
Q ss_pred c
Q 022773 274 F 274 (292)
Q Consensus 274 ~ 274 (292)
.
T Consensus 264 ~ 264 (299)
T 1zbh_A 264 C 264 (299)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.56 E-value=1.1e-06 Score=77.42 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=118.2
Q ss_pred HHHHhhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC--CCCCCCCCCCCCC
Q 022773 39 ISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS--SGNLPDLGSGGNN 116 (292)
Q Consensus 39 I~~~i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~--~g~~p~~g~~~~~ 116 (292)
+.+-+++..||++|+|.||+.. . .-.|||||+..++. +|+.
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~-------------~---------------~~~IieIg~v~~~~~~~g~i--------- 64 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNS-------------A---------------TDALLEIAATTVGMDEKGFL--------- 64 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCT-------------T---------------TBCEEEEEEEEEEECTTSCE---------
T ss_pred hhccccCCcEEEEEeeCCCCCC-------------C---------------CCeeEEEEEEEEEEcCCCcc---------
Confidence 4566778899999999999731 0 13599999999873 5542
Q ss_pred eeEEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHc--Cccc---cCCcceEEeeCchhHHHH
Q 022773 117 KFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSS--GLVC---NESVSWVTFHSAYDFGYL 191 (292)
Q Consensus 117 ~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--glv~---~~~~~wv~fhg~yD~~yL 191 (292)
.....|+.+.-|.......+.+.+. +||.=......|.+.....+.+..- ..+. ..+...|++++.+|+.+|
T Consensus 65 ~~~~~f~~lV~P~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL 141 (224)
T 2f96_A 65 FPEHTYFFRIEPFEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFL 141 (224)
T ss_dssp EEEEEEEEEBCCCTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHH
T ss_pred cccceEEEEECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHH
Confidence 2356677763333233455555544 7988766777888765432222210 0000 012234444456999998
Q ss_pred HHHhCCCCCCCCHHHHHHHHHhhcCC-cccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHH
Q 022773 192 VKILTRRSLPSGLDEFLTVLRVFFGN-NIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIR 270 (292)
Q Consensus 192 ~k~l~~~~LP~~~~~F~~~l~~~F~P-~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~ 270 (292)
.+.+....++. .-|.+ .++||..+++..-. .-+|+.+++.+|++......|-|-.|++.|+++|.+|.
T Consensus 142 ~~~~~~~g~~~----------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~ 210 (224)
T 2f96_A 142 NAAVARTGIKR----------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIV 210 (224)
T ss_dssp HHHHHHHTCCC----------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCc----------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHH
Confidence 87764211210 00101 47799888876421 23799999999998622368999999999999999998
Q ss_pred HHhcC
Q 022773 271 DVYFV 275 (292)
Q Consensus 271 ~~~~~ 275 (292)
+++..
T Consensus 211 ~~~~~ 215 (224)
T 2f96_A 211 NRWKE 215 (224)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
No 11
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.47 E-value=1.1e-05 Score=71.09 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=110.8
Q ss_pred CceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCC-CCCCCCCCCCCCeeEEEEeec
Q 022773 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSS-GNLPDLGSGGNNKFIWEFNFR 125 (292)
Q Consensus 47 ~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~-g~~p~~g~~~~~~~~w~FNF~ 125 (292)
.||++|+|.||+... . +.-.|||||...++.. ++ ..-.|+.+
T Consensus 32 ~~vviD~ETTGl~~~------------~--------------d~~~IieIgav~v~~~~~~-----------i~~~f~~l 74 (224)
T 2xri_A 32 YFLVLDFEATCDKPQ------------I--------------HPQEIIEFPILKLNGRTME-----------IESTFHMY 74 (224)
T ss_dssp EEEEECCEECCCC-C------------C--------------SSCCEEEEEEEEEETTTCC-----------EEEEEEEE
T ss_pred eEEEEEEEcCCCCCC------------C--------------CCcceEEEEEEEEecCCcE-----------EeeeeeeE
Confidence 599999999997421 1 2236999999988754 32 34567776
Q ss_pred ccCCCC-CCCChhHHHHHHHcCCChhhhhhcCCChHHHH----HHHHHcCccc-cCCcceEEeeCchhHHHHH-HHhC--
Q 022773 126 DFDIAT-DAHAPDSIELLRLQGIDFERNRKEGVDSVRFA----ELMMSSGLVC-NESVSWVTFHSAYDFGYLV-KILT-- 196 (292)
Q Consensus 126 ~F~~~~-d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~----e~l~~Sglv~-~~~~~wv~fhg~yD~~yL~-k~l~-- 196 (292)
..+.. ....+.+.+. +||.=..+ .+|.+..... +.+....+|- |....|++. |.+|+.+|+ +.+.
T Consensus 75 -V~P~~~~~i~~~~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~ 148 (224)
T 2xri_A 75 -VQPVVHPQLTPFCTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYL 148 (224)
T ss_dssp -CCCSSSCSCCHHHHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHH
T ss_pred -ECCCCCCcCCHHHHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHh
Confidence 33333 2455555544 78886654 4577665533 3333444443 224567766 589999855 3332
Q ss_pred CCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhc--cchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHh
Q 022773 197 RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVY 273 (292)
Q Consensus 197 ~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l--~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~ 273 (292)
|-++|. +| ...+|++...+....+ .-+|..+++.+|++. .+.+|.|-.|+..|+++|.+|.++.
T Consensus 149 g~~~p~-----------~~-~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~-~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 149 GLPVAD-----------YF-KQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQH-IGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp TCCCCG-----------GG-SCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcc-----------cc-cceEeHHHHHHHHhccCCCCCHHHHHHHcCCCC-CCCCcChHHHHHHHHHHHHHHHHcC
Confidence 344442 23 3566865444433332 247999999999997 6889999999999999999998763
No 12
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.42 E-value=4.7e-06 Score=78.93 Aligned_cols=176 Identities=14% Similarity=0.030 Sum_probs=113.3
Q ss_pred CCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC-CCCCCCCCCCCCCeeEEEEee
Q 022773 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNF 124 (292)
Q Consensus 46 ~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~-~g~~p~~g~~~~~~~~w~FNF 124 (292)
-.||+||+|.||+...+ +...-.|||||+..++. +|+ ..-.|+.
T Consensus 128 ~~~vviD~ETTGl~~~~------------------------~~~~deIIEIgaV~vd~~~g~-----------i~~~f~~ 172 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP------------------------PEFVHEIIEFPVVLLNTHTLE-----------IEDTFQQ 172 (349)
T ss_dssp SEEEECCCEECCCTTCC------------------------TTCCCCEEECCEEEEETTTTE-----------EEEEECC
T ss_pred CeEEEEEEecCCCCCcC------------------------CCCCCeEEEEEEEEEECCCce-----------EeEEEEE
Confidence 36899999999984311 11234599999999985 343 3456776
Q ss_pred cccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHH----HHHHcCccccCCcceEEeeCchhHH-HHHHHhC--C
Q 022773 125 RDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAE----LMMSSGLVCNESVSWVTFHSAYDFG-YLVKILT--R 197 (292)
Q Consensus 125 ~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e----~l~~Sglv~~~~~~wv~fhg~yD~~-yL~k~l~--~ 197 (292)
+.-|.......+.+.+. +||.=..+. ++.+.....+ .+....+- .+....|++++.+|+. ||-+.+. |
T Consensus 173 lVkP~~~~~I~~~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g 247 (349)
T 1zbu_A 173 YVRPEINTQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSR 247 (349)
T ss_dssp BEECSSSCSCCHHHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTT
T ss_pred EECCCCCCCCCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhC
Confidence 63332222455555544 788766654 4655544333 22222111 1113455666679999 9877653 3
Q ss_pred CCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhcc---chHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhc
Q 022773 198 RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLY---GGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 274 (292)
Q Consensus 198 ~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~---~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~ 274 (292)
.++|. ++ -.+.|++.+....-++. -+|+.+++.+|++. .|.+|.|-.|+..|+.+|.+|.+...
T Consensus 248 ~~~p~-----------~~-~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 248 LKYPP-----------FA-KKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp BCCCG-----------GG-SEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcc-----------cc-chHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44442 22 35679988766542332 47999999999997 77889999999999999999988753
No 13
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.40 E-value=2.2e-06 Score=73.54 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=106.4
Q ss_pred CCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEEeec
Q 022773 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFR 125 (292)
Q Consensus 46 ~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~FNF~ 125 (292)
.+||++|+|.||+.... . | -+.-.|||||...++ +|+. ....|+.+
T Consensus 9 ~~~vviD~ETTGl~~~~-----------~------~------~~~~~Iieig~v~~~-~~~~----------~~~~f~~l 54 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG-----------A------H------YEGHKIIEIGAVEVV-NRRL----------TGNNFHVY 54 (194)
T ss_dssp CEEEEEEEEESCCCSSS-----------S------T------TTTCCEEEEEEEEEE-TTEE----------CSCCEEEE
T ss_pred CCEEEEEeeCCCCCCcc-----------c------C------CCCCEEEEEEEEEEE-CCeE----------eccEEEEE
Confidence 57999999999985311 0 0 012469999999887 3432 11235544
Q ss_pred ccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcceEEeeCchhHHHHHHHhC--CCCCCCC
Q 022773 126 DFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT--RRSLPSG 203 (292)
Q Consensus 126 ~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wv~fhg~yD~~yL~k~l~--~~~LP~~ 203 (292)
.++.. ...+.+.+. +|+.=+.+. ++.+.....+.+.. ++ .+...|++++.+|+.+|.+.+. |.+.|.
T Consensus 55 -v~P~~-~i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~--~l--~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~- 123 (194)
T 2gui_A 55 -LKPDR-LVDPEAFGV---HGIADEFLL-DKPTFAEVADEFMD--YI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPK- 123 (194)
T ss_dssp -CCCSS-CCCHHHHHH---HCCCHHHHT-TSCCHHHHHHHHHH--HH--TTSEEEETTHHHHHHHHHHHHHHTCSCCCC-
T ss_pred -ECcCC-cCCHHHHHh---hCcCHHHHh-CCCCHHHHHHHHHH--HH--CCCeEEEEchHHhHHHHHHHHHHcCCCCcc-
Confidence 33322 445555443 788866553 45555443333321 11 1223455555699999988764 344442
Q ss_pred HHHHHHHHHhhcCCcccchHHHHHhh-hhccchHHHHHHHcCCCCCCC-CCccchhhHHHHHHHHHHHHHH
Q 022773 204 LDEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVG-KCHQAGSDSLLTWHAFQKIRDV 272 (292)
Q Consensus 204 ~~~F~~~l~~~F~P~iyDtK~la~~~-~~l~~~L~~la~~L~v~r~~g-~~HqAGsDS~lT~~~F~~l~~~ 272 (292)
.. .+ ..++||..+++.. ++...+|+.+++.+|++. .+ .+|.|-.|+..|+++|.+|.+.
T Consensus 124 ~~--------~~-~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 124 TN--------TF-CKVTDSLAVARKMFPGKRNSLDALCARYEIDN-SKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp GG--------GT-SEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCC-TTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred cc--------cc-CceeeHHHHHHHHcCCCCCCHHHHHHHcCcCC-CCCCCCChHHHHHHHHHHHHHHHhc
Confidence 10 11 3577887776653 344568999999999998 66 5899999999999999998764
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.36 E-value=6.4e-06 Score=70.50 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=103.9
Q ss_pred hhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEE
Q 022773 43 IDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEF 122 (292)
Q Consensus 43 i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~F 122 (292)
+...+||++|+|.||+.. . .-.|||||+..++ +|+ ..-.|
T Consensus 9 l~~~~~v~iD~ETTGl~~-------------~---------------~~~IieIg~v~~~-~g~-----------i~~~f 48 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDP-------------Q---------------VDEIIEIGAVKIQ-GGQ-----------IVDEY 48 (186)
T ss_dssp ----CEEEEEEEESCSCT-------------T---------------TCCEEEEEEEEEE-TTE-----------EEEEE
T ss_pred CcCCCEEEEEEECCCCCC-------------C---------------CCeEEEEEEEEEE-CCE-----------EEEEE
Confidence 456789999999999731 1 0148999998886 443 23456
Q ss_pred eecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcceEEeeCchhHHHHHHHhC--CCCC
Q 022773 123 NFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT--RRSL 200 (292)
Q Consensus 123 NF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wv~fhg~yD~~yL~k~l~--~~~L 200 (292)
+.+ ..+.. ...+.+.+ -+|+.-..+. ++.+.....+.+.. .+ .+...|++++.+|+.+|.+.+. |.+.
T Consensus 49 ~~l-v~P~~-~i~~~~~~---i~GIt~~~l~-~~~~~~~v~~~~~~--~l--~~~~lv~hn~~fD~~~L~~~~~~~g~~~ 118 (186)
T 2p1j_A 49 HTL-IKPSR-EISRKSSE---ITGITQEMLE-NKRSIEEVLPEFLG--FL--EDSIIVAHNANFDYRFLRLWIKKVMGLD 118 (186)
T ss_dssp EEE-CBCSS-CCCHHHHH---HHCCCHHHHT-TCCBHHHHHHHHHH--HS--SSCEEEETTHHHHHHHHHHHHHHHHCCC
T ss_pred EEE-ECcCC-CCCHHHhh---hcCCCHHHHh-cCCCHHHHHHHHHH--HH--CCCEEEEECcHHHHHHHHHHHHHcCCCC
Confidence 665 33322 34444433 3788766544 46665554444432 12 1224445555699999887663 1222
Q ss_pred CCCHHHHHHHHHhhcCCcccchHHHHHhhhhc-cchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 022773 201 PSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL-YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDV 272 (292)
Q Consensus 201 P~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l-~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~ 272 (292)
| ...++||..+++...+. .-+|+.+++.+|++. .+ .|.|-.|+..|+.+|.+|.+.
T Consensus 119 ~--------------~~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~-~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 119 W--------------ERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGP-FR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp C--------------CCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCS-TT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred C--------------CCCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCC-CC-CcCHHHHHHHHHHHHHHHHHH
Confidence 2 13467998887765422 357999999999987 44 699999999999999998765
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.33 E-value=4.7e-06 Score=74.74 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=113.1
Q ss_pred CceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCC-------C-CCCCCCCCCCee
Q 022773 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSG-------N-LPDLGSGGNNKF 118 (292)
Q Consensus 47 ~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g-------~-~p~~g~~~~~~~ 118 (292)
.||++|+|.||+... .=.|||||+..++.++ + .|. +.+.....
T Consensus 13 ~~vv~D~ETTGl~~~----------------------------~d~IiEIgav~v~~~~~~~~~~~~~~~~-~~~~~~~v 63 (242)
T 3mxm_B 13 TLIFLDLEATGLPSS----------------------------RPEVTELCLLAVHRRALENTSISQGHPP-PVPRPPRV 63 (242)
T ss_dssp EEEEEEEEESSCGGG----------------------------CCCEEEEEEEEEEHHHHHTSCCCCSSSC-CCCCCCSC
T ss_pred eEEEEEeecCCCCCC----------------------------CCeeEEEEEEEecCCccccccccccccc-ccccccch
Confidence 599999999998421 1469999998876431 0 010 00000123
Q ss_pred EEEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCC-hH-HHHHHHHH--cCccccCCcceEEeeC-chhHHHHHH
Q 022773 119 IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVD-SV-RFAELMMS--SGLVCNESVSWVTFHS-AYDFGYLVK 193 (292)
Q Consensus 119 ~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~-~~-~f~e~l~~--Sglv~~~~~~wv~fhg-~yD~~yL~k 193 (292)
...|+.. .+.. ....+.+. +-||+.=..+...|+| .. ...+.+.. .++ .+...+|++++ .+|+.||-+
T Consensus 64 ~~~~~~l-i~P~-~~i~~~~~---~i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~ 136 (242)
T 3mxm_B 64 VDKLSLC-IAPG-KACSPGAS---EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQT 136 (242)
T ss_dssp CEEEEEE-CCCS-SCCCHHHH---HHHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHH
T ss_pred hheeEEE-ECCC-CCCCHHHH---HhcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHH
Confidence 4566765 4443 24555554 4599999999888864 42 44433332 121 11234555555 799999999
Q ss_pred HhCCCCCCCCHHHHHHHHHhhcCC-cccchHHHHHhhh-h--------c-cchHHHHHHH-cCCCCCCCCCccchhhHHH
Q 022773 194 ILTRRSLPSGLDEFLTVLRVFFGN-NIYDVKHIMRFCQ-S--------L-YGGLDRVART-LDVSRAVGKCHQAGSDSLL 261 (292)
Q Consensus 194 ~l~~~~LP~~~~~F~~~l~~~F~P-~iyDtK~la~~~~-~--------l-~~~L~~la~~-L~v~r~~g~~HqAGsDS~l 261 (292)
.+....+|.. +.+ .++||-.+++.+. . + .-+|+.+++. +|++. . .+|.|-+|++.
T Consensus 137 ~~~r~g~~~~-----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~-~-~~H~Al~Da~a 203 (242)
T 3mxm_B 137 ELARLSTPSP-----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP-T-DSHTAEGDDLT 203 (242)
T ss_dssp HHHTSSSCCT-----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCC-S-STTSHHHHHHH
T ss_pred HHHHcCCCCC-----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCC-C-CCcChHHHHHH
Confidence 8853323211 112 3568877777532 1 1 2379999976 99987 3 47999999999
Q ss_pred HHHHHHHHHHHhcC
Q 022773 262 TWHAFQKIRDVYFV 275 (292)
Q Consensus 262 T~~~F~~l~~~~~~ 275 (292)
|+++|.++.+.+.+
T Consensus 204 ta~l~~~~~~~~~~ 217 (242)
T 3mxm_B 204 LLSICQWKPQALLQ 217 (242)
T ss_dssp HHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 16
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.30 E-value=1.8e-05 Score=73.54 Aligned_cols=173 Identities=16% Similarity=0.231 Sum_probs=112.6
Q ss_pred CceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecC-CCCCCCCCCCCCCeeEEEEeec
Q 022773 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDS-SGNLPDLGSGGNNKFIWEFNFR 125 (292)
Q Consensus 47 ~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~-~g~~p~~g~~~~~~~~w~FNF~ 125 (292)
.||+||+|.||+... .+ | ...|||||...++. +|+. .....|+-+
T Consensus 20 ~~vviD~ETTGl~~~------------~d-----~--------~~eIIEIgaV~vd~~~g~i---------~~~~~f~~l 65 (308)
T 3cg7_A 20 TLLILDFETTSDAAN------------QD-----Y--------PCEVIQFAIVAYDVPNDKI---------REDISFNKY 65 (308)
T ss_dssp EEEEEEEEECCBTTB------------CS-----C--------CCCEEEEEEEEEETTTTEE---------EEEEEEEEE
T ss_pred eEEEEEeecCCCCCC------------CC-----C--------CCCeEEEEEEEEEcCCCEE---------eeccceeeE
Confidence 589999999998532 11 1 24699999999985 4531 122257766
Q ss_pred ccCCCCC-CCChhHHHHHHHcCCChhhhhhcCCChHHHH----HHHHHcCccccCCcceEEeeCchhH-HHHHHHhC--C
Q 022773 126 DFDIATD-AHAPDSIELLRLQGIDFERNRKEGVDSVRFA----ELMMSSGLVCNESVSWVTFHSAYDF-GYLVKILT--R 197 (292)
Q Consensus 126 ~F~~~~d-~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~----e~l~~Sglv~~~~~~wv~fhg~yD~-~yL~k~l~--~ 197 (292)
.+.... ...+.+.+. +||.=..+. +|.+..... +.+....++ .-+..|+ .+|.+|+ .+|-+.+. |
T Consensus 66 -V~P~~~p~i~~~~~~l---tGIt~e~v~-~ap~~~evl~~f~~~l~~~~lv-ahn~~lv-~~g~fD~~~fL~~~~~~~g 138 (308)
T 3cg7_A 66 -VKPVLNRTLTKNCVDF---TGIPQRSID-TADTFDVVYEQFQQWLITLGLE-EGKFAFV-CDSRQDLWRIAQYQMKLSN 138 (308)
T ss_dssp -CBCSSBCSCCHHHHHH---HCCCHHHHH-TSCBHHHHHHHHHHHHHHHCCC-TTSEEEE-ESSSHHHHTHHHHHHHHTT
T ss_pred -ECCCCCCCCCHHHHHH---cCCCHHHHh-cCCCHHHHHHHHHHHHHhCCcC-CcceEEe-ccCcccHHHHHHHHHHHcC
Confidence 333332 255555543 888876654 477766533 333334443 2234454 4578999 68766543 3
Q ss_pred CCCCCCHHHHHHHHHhhcCCcccchHHHHHhh-hhc-------cchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHH
Q 022773 198 RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QSL-------YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 269 (292)
Q Consensus 198 ~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~-~~l-------~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l 269 (292)
-++|. +| ...+||+-+++.. +.. .-+|..+++.+|++. .+..|.|-.|+..|+++|.+|
T Consensus 139 ~~~p~-----------~~-~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~HrAl~DA~ata~l~~~l 205 (308)
T 3cg7_A 139 IQMPA-----------FF-RQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPT-IGRAHDAMDDCLNIATILQRM 205 (308)
T ss_dssp CCCCG-----------GG-SEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHH
T ss_pred CCCch-----------hh-cceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCC-CCCCcCHHHHHHHHHHHHHHH
Confidence 44443 23 3467998777653 222 237999999999998 788899999999999999999
Q ss_pred HHHh
Q 022773 270 RDVY 273 (292)
Q Consensus 270 ~~~~ 273 (292)
.+..
T Consensus 206 ~~~~ 209 (308)
T 3cg7_A 206 INMG 209 (308)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8764
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.22 E-value=1.4e-05 Score=70.63 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCC-CCCC---CCCCCCeeEEE
Q 022773 46 YPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGN-LPDL---GSGGNNKFIWE 121 (292)
Q Consensus 46 ~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~-~p~~---g~~~~~~~~w~ 121 (292)
.+||++|+|.||+... .-.|||||+..++.++. .+.. +........-.
T Consensus 10 ~~~v~iD~ETTGl~~~----------------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 61 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV----------------------------EPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDK 61 (238)
T ss_dssp SEEEEEEEEESSCGGG----------------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEE
T ss_pred CeEEEEEeeCCCcCCC----------------------------CCcEEEEEEEEeccccccccccccccccccccccee
Confidence 4699999999997410 12599999998875310 0000 00000012345
Q ss_pred EeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChH--HHHHHHHH--cCccccCCcceEEeeC-chhHHHHHHHhC
Q 022773 122 FNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSV--RFAELMMS--SGLVCNESVSWVTFHS-AYDFGYLVKILT 196 (292)
Q Consensus 122 FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~--~f~e~l~~--Sglv~~~~~~wv~fhg-~yD~~yL~k~l~ 196 (292)
|+.+ .+... ...+.+.+ -+|+.=..+...|.|.. ...+.+.. .++ .+...+|++++ .+|+.+|.+.+.
T Consensus 62 f~~l-v~P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~--~~~~~lVahN~~~FD~~fL~~~~~ 134 (238)
T 1y97_A 62 LTLC-MCPER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQ--AGPICLVAHNGFDYDFPLLCAELR 134 (238)
T ss_dssp EEEE-CCCSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTS--CSSEEEEETTTTTTHHHHHHHHHH
T ss_pred eEEE-ECCCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhC--CCCCEEEecCchhhhHHHHHHHHH
Confidence 6665 34333 44555543 48999888877777652 33333321 111 11235566666 799999988764
Q ss_pred --CCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhh----------hc-cchHHHHHH-HcCCCCCCCCCccchhhHHHH
Q 022773 197 --RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ----------SL-YGGLDRVAR-TLDVSRAVGKCHQAGSDSLLT 262 (292)
Q Consensus 197 --~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~----------~l-~~~L~~la~-~L~v~r~~g~~HqAGsDS~lT 262 (292)
|.++|.. ..++||..+++.+. ++ .-+|+.+++ .+|++. ...|.|-.|++.|
T Consensus 135 ~~g~~~~~~-------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~--~~~H~Al~Da~~t 199 (238)
T 1y97_A 135 RLGARLPRD-------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEP--SAAHSAEGDVHTL 199 (238)
T ss_dssp HHTCCCCTT-------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCC--C---CHHHHHHHH
T ss_pred HcCCCCCCC-------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCC--ccCccHHHHHHHH
Confidence 2333310 13678877776652 22 347999999 499986 4579999999999
Q ss_pred HHHHHHHHHHhc
Q 022773 263 WHAFQKIRDVYF 274 (292)
Q Consensus 263 ~~~F~~l~~~~~ 274 (292)
+++|.+|.+.+.
T Consensus 200 a~l~~~l~~~~~ 211 (238)
T 1y97_A 200 LLIFLHRAAELL 211 (238)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.16 E-value=1.4e-05 Score=78.68 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=111.6
Q ss_pred hhcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEE
Q 022773 43 IDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEF 122 (292)
Q Consensus 43 i~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~F 122 (292)
+...+||++|+|.||+... . -.|||||...++.+|+.- ..+|
T Consensus 6 ~~~~~~vv~DlETTGl~p~------------~----------------d~IIEIgaV~vd~~g~ii----------~~~f 47 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA------------L----------------DRPAQFAAIRTDSEFNVI----------GEPE 47 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT------------T----------------SCEEEEEEEEECTTSCBC----------SCCE
T ss_pred CCCCCEEEEEEECCCCCCC------------C----------------CeEEEEEEEEEECCCeEE----------eeee
Confidence 4567899999999997410 0 259999999998777632 1125
Q ss_pred eecccCCCCCC-CChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcceEEeeC-chhHHHHHHHhCCCCC
Q 022773 123 NFRDFDIATDA-HAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHS-AYDFGYLVKILTRRSL 200 (292)
Q Consensus 123 NF~~F~~~~d~-~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wv~fhg-~yD~~yL~k~l~~~~L 200 (292)
+.+ ..+..+. ..++++ .-+||.=..+...|.+...+.+.+.. .+..++..+|+++| .+|+.+|-+.+...-+
T Consensus 48 ~~l-VkP~~~ilp~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~ 121 (482)
T 2qxf_A 48 VFY-CKPADDYLPQPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 (482)
T ss_dssp EEE-BCCCTTCCCCHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTS
T ss_pred EEE-ECCCCCCCCCHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHhCC
Confidence 655 4444443 356666 45999998888889885554444331 11112334444442 6999999887753222
Q ss_pred CCCHHHHHHHHHhh-cCCcccchHHHHHhhhh--------------c-cchHHHHHHHcCCCCCCCCCccchhhHHHHHH
Q 022773 201 PSGLDEFLTVLRVF-FGNNIYDVKHIMRFCQS--------------L-YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWH 264 (292)
Q Consensus 201 P~~~~~F~~~l~~~-F~P~iyDtK~la~~~~~--------------l-~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~ 264 (292)
|.-. ..| .+...+||--+++.+.. . .-+|+.+++.+|++. +.+|.|-+|++.|+.
T Consensus 122 ~~~~-------~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~--~~aHrAL~DA~aTa~ 192 (482)
T 2qxf_A 122 DPYA-------WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNAHDAMADVYATIA 192 (482)
T ss_dssp CSSG-------GGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC--C---CTTHHHHHHHH
T ss_pred Cccc-------cccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC--CCCCCHHHHHHHHHH
Confidence 2110 011 00235688777666531 1 126999999999986 457999999999999
Q ss_pred HHHHHHHH
Q 022773 265 AFQKIRDV 272 (292)
Q Consensus 265 ~F~~l~~~ 272 (292)
+|.+|++.
T Consensus 193 l~~~l~~~ 200 (482)
T 2qxf_A 193 MAKLVKTR 200 (482)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 19
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.98 E-value=2.5e-05 Score=66.97 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=93.2
Q ss_pred cCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEEee
Q 022773 45 RYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNF 124 (292)
Q Consensus 45 ~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~FNF 124 (292)
..+||++|+|.||+... . .-.++|+|+. +.+|+ . . |+.
T Consensus 4 ~~~~vviD~ETTGl~~~------------~---------------~~~iiei~~v--~~~g~----------~-i--~~~ 41 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH------------R---------------ESGLARCSLV--NVHGA----------V-L--YDK 41 (189)
T ss_dssp --CEEEEEEEEEEETTT------------T---------------EEEEEEEEEE--CTTCC----------E-E--EEE
T ss_pred CCeEEEEEeECcCcCCC------------C---------------CceEEEEEEE--eCCCC----------E-E--Eee
Confidence 46899999999997410 0 2347799875 44553 1 2 554
Q ss_pred cccCCCCCCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHHcCccccCCcceEEeeC-chhHHHHHHHhCCCCCCCC
Q 022773 125 RDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHS-AYDFGYLVKILTRRSLPSG 203 (292)
Q Consensus 125 ~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wv~fhg-~yD~~yL~k~l~~~~LP~~ 203 (292)
+ ..+.. ...+.+.+. +||.=..+. ++.+.....+.+.. ++ .+ ..++.|+ .+|+.+|-+ .+|.
T Consensus 42 l-V~P~~-~i~~~~~~i---~GIt~~~l~-~a~~~~~v~~~~~~--~l--~~-~~lV~hn~~fD~~~L~~-----~~~~- 104 (189)
T 1wlj_A 42 F-IRPEG-EITDYRTRV---SGVTPQHMV-GATPFAVARLEILQ--LL--KG-KLVVGHDLKHDFQALKE-----DMSG- 104 (189)
T ss_dssp E-EECSS-CEEECCHHH---HCCCHHHHT-TCEEHHHHHHHHHH--HH--TT-SEEEESSHHHHHHHTTC-----CCTT-
T ss_pred E-ecCCC-CCCccccCC---CCCCHHHHc-CCCCHHHHHHHHHH--HH--CC-CEEEECCcHHHHHHHHH-----hCCC-
Confidence 4 22222 233334333 677655543 35554443333322 11 12 3455555 599987643 2331
Q ss_pred HHHHHHHHHhhcCCcccchHHHHHhhh--hc----cchHHHHHHH-cCCCCCCCC--CccchhhHHHHHHHHHHHHHHhc
Q 022773 204 LDEFLTVLRVFFGNNIYDVKHIMRFCQ--SL----YGGLDRVART-LDVSRAVGK--CHQAGSDSLLTWHAFQKIRDVYF 274 (292)
Q Consensus 204 ~~~F~~~l~~~F~P~iyDtK~la~~~~--~l----~~~L~~la~~-L~v~r~~g~--~HqAGsDS~lT~~~F~~l~~~~~ 274 (292)
..++||..+....+ .+ .-+|+.+++. +|++. .+. .|.|-.|+..|+++|.+|.+.+.
T Consensus 105 -------------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~-~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 105 -------------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSI-QNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp -------------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCC-SCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCC-CCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 13678876543221 22 3579999998 89986 343 89999999999999999998875
Q ss_pred C
Q 022773 275 V 275 (292)
Q Consensus 275 ~ 275 (292)
.
T Consensus 171 ~ 171 (189)
T 1wlj_A 171 R 171 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.97 E-value=0.00014 Score=61.42 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=98.2
Q ss_pred cCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEEee
Q 022773 45 RYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNF 124 (292)
Q Consensus 45 ~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~FNF 124 (292)
.-+||++|+|.||+... .-.|||||...++.+++ .....|+.
T Consensus 4 ~~~~v~iD~ETTGl~~~----------------------------~~~IieIg~v~~~~~~~----------~~~~~~~~ 45 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE----------------------------RDRIIEIATLVTDANLN----------ILAEGPTI 45 (180)
T ss_dssp GGCEEEEEEEESSSCTT----------------------------TCCEEEEEEEEECTTCC----------EEEEEEEE
T ss_pred CCcEEEEEeeCCCCCCC----------------------------CCceEEEEEEEEcCCCc----------EecCCcce
Confidence 35799999999997410 02599999998876554 22334676
Q ss_pred cccCCCCC---CCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHH--cCccccCCcceEEeeC-chhHHHHHHHhCCC
Q 022773 125 RDFDIATD---AHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMS--SGLVCNESVSWVTFHS-AYDFGYLVKILTRR 198 (292)
Q Consensus 125 ~~F~~~~d---~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wv~fhg-~yD~~yL~k~l~~~ 198 (292)
+ .++... ..++.+.+.-.-+|+.=.. ..+|.+.....+.+.. .+.. .++...++.|| .+|+.+|-+.+.
T Consensus 46 l-v~P~~~i~~~i~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~-~~~~~~lv~hn~~fD~~fL~~~~~-- 120 (180)
T 2igi_A 46 A-VHQSDEQLALMDDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWV-PAGKSPICGNSIGQDRRFLFKYMP-- 120 (180)
T ss_dssp E-CCCCHHHHTTCCHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTS-CTTTSCEEESSHHHHHHHHHHHCH--
T ss_pred E-ECCCHHHhhcCCHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhC-CCCCceEEecCHHHHHHHHHHHHH--
Confidence 6 333221 2333444433346776554 4557766554443332 1111 11123466676 699999987752
Q ss_pred CCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 199 ~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
. +...+....+|+..|.+..+.+...+. .+++ ....|.|-.|+..|+.+|.++++.+|.
T Consensus 121 -------~----~~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~--~~~~H~Al~Da~ata~l~~~~~~~~~~ 179 (180)
T 2igi_A 121 -------E----LEAYFHYRYLDVSTLKELARRWKPEIL-----DGFT--KQGTHQAMDDIRESVAELAYYREHFIK 179 (180)
T ss_dssp -------H----HHHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC--CCCCCCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -------H----hccCCCcceeeHHHHHHHHHHhChHhh-----hCCC--CcCCcCcHHHHHHHHHHHHHHHHHhhc
Confidence 1 123342347785444322222222221 1453 356899999999999999999998763
No 21
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.93 E-value=7.7e-05 Score=69.69 Aligned_cols=182 Identities=18% Similarity=0.138 Sum_probs=110.9
Q ss_pred CceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCC-------CCCCCCCCCeeE
Q 022773 47 PFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNL-------PDLGSGGNNKFI 119 (292)
Q Consensus 47 ~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~-------p~~g~~~~~~~~ 119 (292)
.||++|+|-||+... .=.|||||+..++.++.. +..+........
T Consensus 13 tfVv~DlETTGL~~~----------------------------~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~ 64 (314)
T 3u3y_B 13 TLIFLDLEATGLPSS----------------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVV 64 (314)
T ss_dssp EEEEEEEEESSCGGG----------------------------CCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSC
T ss_pred CEEEEEEECCCCCCC----------------------------CCeEEEEEEEEEECCccccccccccccccccccceee
Confidence 599999999998421 235999999988754210 000000001234
Q ss_pred EEEeecccCCCCCCCChhHHHHHHHcCCChhhhhhcCCCh--HHHHHHHHH--cCccccCCcceEEeeC-chhHHHHHHH
Q 022773 120 WEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDS--VRFAELMMS--SGLVCNESVSWVTFHS-AYDFGYLVKI 194 (292)
Q Consensus 120 w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~--~~f~e~l~~--Sglv~~~~~~wv~fhg-~yD~~yL~k~ 194 (292)
..|+.. .+.. ..+.+.+.+ -|||.=+.+...|+|. ....+.+.. .+. .+...+|+++| .+|+.||-+.
T Consensus 65 ~~~~~l-I~P~-~~I~~~a~~---IhGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~e 137 (314)
T 3u3y_B 65 DKLSLC-IAPG-KACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTE 137 (314)
T ss_dssp EEEEEE-CBCS-SCCCHHHHH---HHSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHH
T ss_pred eeEEEE-ECCC-CCCCHHHHH---hcCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHH
Confidence 567765 4443 245666654 3999999999999853 244433322 121 11234455552 6999999998
Q ss_pred hCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhh-hh---------ccchHHHHHHH-cCCCCCCCCCccchhhHHHHH
Q 022773 195 LTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QS---------LYGGLDRVART-LDVSRAVGKCHQAGSDSLLTW 263 (292)
Q Consensus 195 l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~-~~---------l~~~L~~la~~-L~v~r~~g~~HqAGsDS~lT~ 263 (292)
+....++... ....+.||--+++.+ +. -.-+|+.+++. +|++. ...|.|-+|++.|+
T Consensus 138 l~r~Gl~~~~----------~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~--~~aHrAl~DA~ata 205 (314)
T 3u3y_B 138 LARLSTPSPL----------DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP--TDSHTAEGHVLTLL 205 (314)
T ss_dssp HHTSSSCCTT----------TTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCC--SCSSSHHHHHHHHH
T ss_pred HHHcCCCCCC----------CCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCC--CCCCCHHHHHHHHH
Confidence 8532222100 001245665544422 11 12369999999 99986 35899999999999
Q ss_pred HHHHHHHHHhcC
Q 022773 264 HAFQKIRDVYFV 275 (292)
Q Consensus 264 ~~F~~l~~~~~~ 275 (292)
++|.++.+.+..
T Consensus 206 ~lf~~l~~~~l~ 217 (314)
T 3u3y_B 206 SICQWKPQALLQ 217 (314)
T ss_dssp HHHHSSHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.62 E-value=0.00051 Score=59.05 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=95.8
Q ss_pred hcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEEe
Q 022773 44 DRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFN 123 (292)
Q Consensus 44 ~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~FN 123 (292)
...+||++|+|.||+... . -.|||+|.... +|+.. .....|+
T Consensus 7 ~~~~~vviD~ETTGl~p~------------~----------------d~IieIgav~~--~~~~~--------~~~~~~~ 48 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD------------R----------------DSIIEIATIVT--DAQLN--------VLAEGPE 48 (194)
T ss_dssp -CCEEEEEEEEESCSCTT------------T----------------CCEEEEEEEEE--ETTCC--------EEEECCC
T ss_pred CCCCEEEEEeECCCCCCC------------C----------------CccEEEEEEEE--cCCcc--------eeccCce
Confidence 456899999999998421 1 15999998774 34321 1223355
Q ss_pred ecccCCCCC---CCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHH--cCccccCCcceEEeeCchhHHHHHHHhCCC
Q 022773 124 FRDFDIATD---AHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMS--SGLVCNESVSWVTFHSAYDFGYLVKILTRR 198 (292)
Q Consensus 124 F~~F~~~~d---~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wv~fhg~yD~~yL~k~l~~~ 198 (292)
.. .+..+. ...+...+.-.-+|+.=.. ...+.+.....+.+.. .+-+......+|.++..+|+.||-+.+-
T Consensus 49 ~~-v~p~~~i~~~~~~~~~~~~~itGIt~~~-l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~-- 124 (194)
T 2gbz_A 49 LA-IAHSLETLEAMDEWNRNQHRRSGLWQRV-LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS-- 124 (194)
T ss_dssp EE-CCCCHHHHHTSCSHHHHHHHHHTHHHHH-HHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCH--
T ss_pred EE-EeCCHHHhhccchHHHHHHHhhCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHH--
Confidence 54 322211 1122222333347776543 5567776655444432 1222111122444444599999988762
Q ss_pred CCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 199 SLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 199 ~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
.+ ..++.....|+..+.+.++.+... +++ +++ ....|.|-+|+..|+.+|..+++.++.
T Consensus 125 -------~~----~~~~~~~~~d~~~l~~l~~~~~p~---~~~--~i~--~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 125 -------RL----ERYFHYRNLDVSTIKELARRWAPA---VAS--GFA--KSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp -------HH----HHHSCSCEEEHHHHHHHHHHHCGG---GGT--TCC--CCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred -------Hh----cccCCCccccHHHHHHHHHHhCHH---HHh--CCC--CCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 11 234424567887655443322222 111 243 356799999999999999999988763
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.51 E-value=0.0027 Score=54.72 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=103.6
Q ss_pred hcCCceeccccccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhccccceeeeeeeecCCCCCCCCCCCCCCeeEEEEe
Q 022773 44 DRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFN 123 (292)
Q Consensus 44 ~~~~fIAiDtEF~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd~~~iiQlGLt~~~~~g~~p~~g~~~~~~~~w~FN 123 (292)
.+.+||++|+|.||+... .=.|||+|.-..+.+++ .....+.
T Consensus 7 ~~~~~v~~D~ETTGL~p~----------------------------~d~IiEIgaV~~d~~~~----------i~~~~~~ 48 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPE----------------------------RDRIIEIATIVTNSHLD----------ILAEGPA 48 (186)
T ss_dssp CTTCEEEEEEEESSSCTT----------------------------TCCEEEEEEEEECTTCC----------EEEECCC
T ss_pred CCCcEEEEEEECCCCCCC----------------------------CCceEEEEEEEEcCCeE----------EeeeeEE
Confidence 356899999999998532 12489999986554433 1222223
Q ss_pred ecccCCCC--CCCChhHHHHHHHcCCChhhhhhcCCChHHHHHHHHH--cCccccCCcceEEeeC-chhHHHHHHHhCCC
Q 022773 124 FRDFDIAT--DAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMS--SGLVCNESVSWVTFHS-AYDFGYLVKILTRR 198 (292)
Q Consensus 124 F~~F~~~~--d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wv~fhg-~yD~~yL~k~l~~~ 198 (292)
+..-+..+ +...+.+.+--.-+|+. ++...+|.+.....+.+.. .+-+. ++...++.|+ .+|.+||-+-+-
T Consensus 49 ~~i~~p~~~l~~~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~-~~~~~lvghn~~FD~~FL~~~~~-- 124 (186)
T 3tr8_A 49 FAIHQPDKLLTAMDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVS-AGKSPLCGNSVCQDRRFLSRYMP-- 124 (186)
T ss_dssp EECCCCHHHHTTSCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSC-TTCSCEEESSTHHHHHHHHHHCH--
T ss_pred EEEeCCccccccCCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhcc-CCCcEEEEEcHHHhHHHHHHHHH--
Confidence 33112211 12344455555557887 7778888888776665543 11111 2334566777 599999988752
Q ss_pred CCCCCHHHHHHHHHhhcCCcccch---HHHHHhhhhccchHHHHHHHcCCCCCCCCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 199 SLPSGLDEFLTVLRVFFGNNIYDV---KHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 199 ~LP~~~~~F~~~l~~~F~P~iyDt---K~la~~~~~l~~~L~~la~~L~v~r~~g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
.+...|...+.|+ |.|++.. ..++.. +++ ....|.|=.|+.-|...+.-.++.+|.
T Consensus 125 -----------~~~~~~~~~~iDvsTl~elar~~---~P~~~~-----~~~--~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 125 -----------RLNQFFHYRHLDVTTLKILAQRW---APQIAA-----AHI--KESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp -----------HHHHHSCSCEEEHHHHHHHHHHH---CHHHHT-----TSC--CCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -----------HcCCCCCCcEEeHHHHHHHHHHH---Cccccc-----cCC--CCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 2344563468893 3355542 222221 443 466899999999999999999998876
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=95.16 E-value=0.49 Score=47.38 Aligned_cols=84 Identities=20% Similarity=0.122 Sum_probs=58.9
Q ss_pred ccCCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhh-c-cchHHHHHHHc-CCCCC-
Q 022773 173 CNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQS-L-YGGLDRVARTL-DVSRA- 248 (292)
Q Consensus 173 ~~~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~-l-~~~L~~la~~L-~v~r~- 248 (292)
.++++.||.++..+|+.+|.+ .|-++| +.++||..++..+.. . .-+|+.|++.+ +++..
T Consensus 87 ~d~~i~kV~hnak~D~~~L~~--~Gi~l~---------------~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 87 EDEKALKVGQNLKYDRGILAN--YGIELR---------------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp TCTTSCEEESSHHHHHHHHHT--TTCCCC---------------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred cCCCCeEEEECcHHHHHHHHH--CCCCCC---------------CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 345677887777799998876 232221 236799998887753 2 45799999877 76531
Q ss_pred ------CCC-------------CccchhhHHHHHHHHHHHHHHh
Q 022773 249 ------VGK-------------CHQAGSDSLLTWHAFQKIRDVY 273 (292)
Q Consensus 249 ------~g~-------------~HqAGsDS~lT~~~F~~l~~~~ 273 (292)
-|. .|-|..|+.+|.+.|.+|...+
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1458899999999999998875
No 25
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=53.28 E-value=40 Score=31.77 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=58.6
Q ss_pred ccCCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHHc-CCCCCC--
Q 022773 173 CNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTL-DVSRAV-- 249 (292)
Q Consensus 173 ~~~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~L-~v~r~~-- 249 (292)
.++++.+|.+...+|+..|.+.+ |- .. .+++||...+..++.-.-||..|++.+ |+.-.-
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~-Gi---------------~~-~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDL-GL---------------YV-VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CC---------------CC-SSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTT
T ss_pred cCCCceEEEEehHHHHHHHHHHc-CC---------------Cc-CCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccc
Confidence 34567788777779998887755 21 12 237899988887753357899998765 543210
Q ss_pred ------------CCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 250 ------------GKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 250 ------------g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
...+-|..|++.+..++-+|+..+-.
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233788999999999999887654
No 26
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=37.40 E-value=98 Score=28.40 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=56.1
Q ss_pred cCCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhc-cchHHHHHHHc-CCCCCC--
Q 022773 174 NESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL-YGGLDRVARTL-DVSRAV-- 249 (292)
Q Consensus 174 ~~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l-~~~L~~la~~L-~v~r~~-- 249 (292)
++++.+|.+..-+|+..|.+.+ |- .. ..++||...+..++.- .-||+.+++.+ |+.-.-
T Consensus 72 d~~i~Kv~h~~k~Dl~~L~~~~-Gi---------------~~-~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 72 DPSITKFLHAGSEDLEVFLNVF-GE---------------LP-QPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-SS---------------CC-SSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTT
T ss_pred CCCceEEEeeHHHHHHHHHHHc-CC---------------CC-CcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCc
Confidence 4556777666669988887644 21 11 2467999888877532 45799998765 643210
Q ss_pred ------------CCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 250 ------------GKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 250 ------------g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
...+-|..|++.+..++-+|+..+-.
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233778999999999999887643
No 27
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=34.15 E-value=98 Score=29.44 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=55.1
Q ss_pred cCCcceEEeeCchhHHHHHHHhCCCCCCCCHHHHHHHHHhhcCCcccchHHHHHhhhhccchHHHHHHH-cCCCCC----
Q 022773 174 NESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVART-LDVSRA---- 248 (292)
Q Consensus 174 ~~~~~wv~fhg~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~F~P~iyDtK~la~~~~~l~~~L~~la~~-L~v~r~---- 248 (292)
++++.+|.+...+|+..|.+.+ |-. . ..++||..++..++.-..||..|++. ||+.-.
T Consensus 180 dp~i~KV~H~~k~Dl~~L~~~~-Gi~---------------~-~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~ 242 (428)
T 3saf_A 180 DPAIVKVFHGADSDIEWLQKDF-GLY---------------V-VNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ 242 (428)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-CCC---------------C-SSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTT
T ss_pred CCCceEEEeehHHHHHHHHHHc-CCC---------------c-CceeechhHHHHhCCCCCCHHHHHHHHcCCCCCcccc
Confidence 4566666655569988776554 211 1 34679998888876324588888654 454320
Q ss_pred --------C--CCCccchhhHHHHHHHHHHHHHHhcC
Q 022773 249 --------V--GKCHQAGSDSLLTWHAFQKIRDVYFV 275 (292)
Q Consensus 249 --------~--g~~HqAGsDS~lT~~~F~~l~~~~~~ 275 (292)
. ...+-|..|+..+.+.+-+|+..+-.
T Consensus 243 ~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 243 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 11244788999999999999887653
No 28
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=29.20 E-value=22 Score=28.27 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=33.6
Q ss_pred EeeCchhHHHHHHHhCCCCC-CCCHHHHHHHHHhhc--CCcccchHH
Q 022773 181 TFHSAYDFGYLVKILTRRSL-PSGLDEFLTVLRVFF--GNNIYDVKH 224 (292)
Q Consensus 181 ~fhg~yD~~yL~k~l~~~~L-P~~~~~F~~~l~~~F--~P~iyDtK~ 224 (292)
+|-+|.-||-|++.|.|.|+ |+|...-.+.+..-. -|.+.|+|.
T Consensus 19 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 65 (121)
T 2i52_A 19 FFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRI 65 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHhhhhhhhhhhhccCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 46777889999999999999 999887766665444 266777653
No 29
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=28.81 E-value=69 Score=29.30 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHHHhhcCC--ceecccc------ccccccCCCCCCCCCCCCCCCCchHHHHHHHhhhc--cccceeeee
Q 022773 29 ASNLESEFELISQVIDRYP--FISMDTE------FPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVD--ALNLIQVGL 98 (292)
Q Consensus 29 ~~Nf~eel~~I~~~i~~~~--fIAiDtE------F~G~~~~~~~~~~~~~~~~~~t~e~rY~~lk~nvd--~~~iiQlGL 98 (292)
+.++++.+..+++.++.+. ||++|.- +||+....++ .-+..+--+.++.-.+ ..+++-+.|
T Consensus 209 ~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~pg---------Glt~~e~~~il~~l~~~~~~~vvg~Di 279 (330)
T 4g3h_A 209 RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENN---------GLSFDELKQLLGLLLESFKDRLKAVEV 279 (330)
T ss_dssp HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCSS---------CBCHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCCC---------CCCHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 5566677888888887655 9999974 5776554333 3366777777777766 556665555
Q ss_pred e
Q 022773 99 T 99 (292)
Q Consensus 99 t 99 (292)
+
T Consensus 280 v 280 (330)
T 4g3h_A 280 T 280 (330)
T ss_dssp E
T ss_pred E
Confidence 5
No 30
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=27.73 E-value=25 Score=28.02 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=33.0
Q ss_pred EeeCchhHHHHHHHhCCCCC-CCCHHHHHHHHHhhc--CCcccchHH
Q 022773 181 TFHSAYDFGYLVKILTRRSL-PSGLDEFLTVLRVFF--GNNIYDVKH 224 (292)
Q Consensus 181 ~fhg~yD~~yL~k~l~~~~L-P~~~~~F~~~l~~~F--~P~iyDtK~ 224 (292)
+|-+|.-||-|++.|.|.|+ |++...--+.+..-. -|.+.|+|.
T Consensus 24 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 70 (122)
T 2ogf_A 24 VFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKV 70 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 47778889999999999999 998877666555433 277777653
No 31
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=26.80 E-value=77 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHcCCCCCCC---CCccchhhHHHHHHHHHHHHHHhc
Q 022773 238 RVARTLDVSRAVG---KCHQAGSDSLLTWHAFQKIRDVYF 274 (292)
Q Consensus 238 ~la~~L~v~r~~g---~~HqAGsDS~lT~~~F~~l~~~~~ 274 (292)
-+++.||++. ++ ...+.|-||+++.+.-.+|++.+.
T Consensus 24 i~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 62 (93)
T 4i4d_A 24 IWAETLGRDS-VGPHEDFAALGGNSIHAIXITNRVEELVD 62 (93)
T ss_dssp HHHHHHTCSC-CCTTCCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCC-CCCCCCHHHcCCcHHHHHHHHHHHHHHhC
Confidence 3567788765 33 466799999999999999998863
No 32
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=24.62 E-value=90 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCC-----CCCCCccchhhHHHHHHHHHHHHHHh
Q 022773 236 LDRVARTLDVSR-----AVGKCHQAGSDSLLTWHAFQKIRDVY 273 (292)
Q Consensus 236 L~~la~~L~v~r-----~~g~~HqAGsDS~lT~~~F~~l~~~~ 273 (292)
.+.||+.|+++. +......-|-||+++...=.+|.+.|
T Consensus 12 ~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~f 54 (91)
T 2cg5_B 12 VEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLEREL 54 (91)
T ss_dssp HHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHH
Confidence 356888999853 12346788999999999988888877
No 33
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.49 E-value=59 Score=23.38 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=28.7
Q ss_pred ChhHHHHHHHcCCChh-----------------hhhhcCCChHHHHHHHHHcCc
Q 022773 135 APDSIELLRLQGIDFE-----------------RNRKEGVDSVRFAELMMSSGL 171 (292)
Q Consensus 135 ~~~Si~fL~~~GfDFn-----------------k~~~~GI~~~~f~e~l~~Sgl 171 (292)
-|++++.|.++||++= ....+||+...+.+.|-..|.
T Consensus 22 ~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 22 HPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp CGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 5788999999998874 235678888888888877665
No 34
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=24.01 E-value=75 Score=22.86 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.7
Q ss_pred HHHHHcCCCCCCC---CCccchhhHHHHHHHHHHHHHHhc
Q 022773 238 RVARTLDVSRAVG---KCHQAGSDSLLTWHAFQKIRDVYF 274 (292)
Q Consensus 238 ~la~~L~v~r~~g---~~HqAGsDS~lT~~~F~~l~~~~~ 274 (292)
-+++.|+++. ++ ..-+.|-||+.+.+.-.+|++.+.
T Consensus 22 i~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 60 (91)
T 1dny_A 22 IWERVLGVSG-IGILDNFFQIGGHSLKAMAVAAQVHREYQ 60 (91)
T ss_dssp HHHHHHTCSS-CCSSCCTTSSCCSSHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCC-CCCCCCHHHcCCCHHHHHHHHHHHHHHHC
Confidence 3567788765 33 345789999999999999998863
Done!