Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>022776
MKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD
GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS
NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGA
TTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPA
AQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKNSFPHLNVR

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022776
        (292 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2198586 - symbol:AT1G19980 "AT1G19980" species...   287  2.9e-25   1
UNIPROTKB|Q9X0R4 - symbol:smc "Chromosome partition prote...   120  0.00055   1


>TAIR|locus:2198586 [details] [associations]
            symbol:AT1G19980 "AT1G19980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:BT003883
            EMBL:BT004950 IPI:IPI00526774 RefSeq:NP_173427.1 UniGene:At.41727
            IntAct:Q84JE5 PaxDb:Q84JE5 PRIDE:Q84JE5 EnsemblPlants:AT1G19980.1
            GeneID:838587 KEGG:ath:AT1G19980 TAIR:At1g19980 eggNOG:NOG325418
            InParanoid:Q84JE5 OMA:RTSQVTP PhylomeDB:Q84JE5
            ProtClustDB:CLSN2912831 ArrayExpress:Q84JE5 Genevestigator:Q84JE5
            Uniprot:Q84JE5
        Length = 342

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 65/159 (40%), Positives = 100/159 (62%)

Query:    64 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE 123
             K  EVS  L E  F WNQ+K +E++ T K+  K  E+ +AN +I  L++  EQLQ SN E
Sbjct:   161 KKCEVSDLLRENGFAWNQFKCIESEFTDKLKRKDDEIVQANTKISSLISYQEQLQSSNQE 220

Query:   124 KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTS 183
             KDETI++LK ++A+MET S K + EIS+LT++LE  +KSR    TPVL RCT++   +  
Sbjct:   221 KDETISRLKAKMAEMETNSTKKDEEISKLTRDLESAKKSR--GFTPVLTRCTKLEKRSNG 278

Query:   184 NA-GDSV---QNRSSTAGIKGRLRKSG----SSSVTPLS 214
             N  G  +   +++S+ +    ++ KS     + ++TP+S
Sbjct:   279 NTVGSHISTKKDKSAASTTNEKVSKSSKRKRAKNMTPVS 317


>UNIPROTKB|Q9X0R4 [details] [associations]
            symbol:smc "Chromosome partition protein Smc"
            species:243274 "Thermotoga maritima MSB8" [GO:0042802 "identical
            protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
            InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
            PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
            EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0007062
            SUPFAM:SSF75553 KO:K03529 TIGRFAMs:TIGR02168 EMBL:AGIJ01000001
            PIR:A72287 RefSeq:NP_228987.1 PDB:1E69 PDB:1GXJ PDB:1GXK PDB:1GXL
            PDBsum:1E69 PDBsum:1GXJ PDBsum:1GXK PDBsum:1GXL SMR:Q9X0R4
            GeneID:898303 KEGG:tma:TM1182 PATRIC:23937304 OMA:NNEVHAL
            ProtClustDB:CLSK875623 EvolutionaryTrace:Q9X0R4 Uniprot:Q9X0R4
        Length = 1170

 Score = 120 (47.3 bits), Expect = 0.00055, P = 0.00055
 Identities = 35/140 (25%), Positives = 63/140 (45%)

Query:    34 KLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKI 93
             KL+ +Y   Q  D +        K  D E K +E+S  LDE      +YK    ++    
Sbjct:   281 KLLEDYKKRQ-NDLVEMKGFYSSKLADSENKYVELSTRLDELEKRREEYKKRLEEMEYIF 339

Query:    94 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLT 153
                  + +R  + +EK     E L    N+K++   +++ +I+++E    K   E+ R+ 
Sbjct:   340 KGVMGDYERKAKELEKFEKEKENLLSRFNDKEKEFLRVRDEISKLEKQILKLENELLRIG 399

Query:   154 QELELLRKSRTASDTPVLNR 173
             + LE L K R  ++  +L R
Sbjct:   400 ETLEDLEKRRKITENQILTR 419


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.339    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       292   0.00090  115 3  11 23  0.45    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.79u 0.08s 35.87t   Elapsed:  00:00:01
  Total cpu time:  35.79u 0.08s 35.87t   Elapsed:  00:00:01
  Start:  Fri May 10 18:26:40 2013   End:  Fri May 10 18:26:41 2013

Back to top