Query 022776
Match_columns 292
No_of_seqs 21 out of 23
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 06:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4673 Transcription factor T 95.1 0.13 2.8E-06 54.8 9.7 99 63-163 413-511 (961)
2 PHA02562 46 endonuclease subun 93.8 3.2 7E-05 39.9 15.1 122 36-159 263-391 (562)
3 PF12329 TMF_DNA_bd: TATA elem 93.7 0.29 6.2E-06 37.7 6.5 68 88-162 2-69 (74)
4 PRK11637 AmiB activator; Provi 93.4 1.8 4E-05 41.3 12.8 82 79-160 161-253 (428)
5 KOG0996 Structural maintenance 93.1 0.82 1.8E-05 50.8 11.1 191 63-275 483-699 (1293)
6 COG2433 Uncharacterized conser 92.8 0.37 8.1E-06 50.3 7.6 117 134-277 482-607 (652)
7 PF06005 DUF904: Protein of un 92.6 0.98 2.1E-05 35.0 7.9 67 92-158 5-71 (72)
8 PF12718 Tropomyosin_1: Tropom 92.2 0.69 1.5E-05 39.2 7.3 71 93-163 2-72 (143)
9 PF13863 DUF4200: Domain of un 91.3 4.3 9.3E-05 32.2 10.5 81 76-163 31-111 (126)
10 TIGR02169 SMC_prok_A chromosom 91.3 2.4 5.3E-05 43.4 11.3 35 197-236 522-556 (1164)
11 KOG0963 Transcription factor/C 90.3 3.8 8.3E-05 43.0 11.8 94 40-136 240-341 (629)
12 KOG0995 Centromere-associated 90.3 4.1 8.8E-05 42.5 11.9 96 39-136 187-304 (581)
13 PHA02562 46 endonuclease subun 90.2 4.5 9.7E-05 38.9 11.4 30 63-92 217-246 (562)
14 PF04156 IncA: IncA protein; 90.1 3.4 7.3E-05 34.9 9.5 85 29-117 82-170 (191)
15 KOG0250 DNA repair protein RAD 89.9 2 4.4E-05 47.3 9.9 58 74-131 268-328 (1074)
16 TIGR02168 SMC_prok_B chromosom 89.9 6.7 0.00015 40.0 12.9 11 149-159 381-391 (1179)
17 PF07106 TBPIP: Tat binding pr 89.6 0.95 2.1E-05 38.2 5.8 69 100-169 74-144 (169)
18 PRK11637 AmiB activator; Provi 89.0 2.6 5.6E-05 40.4 8.9 40 99-138 76-115 (428)
19 PF11932 DUF3450: Protein of u 88.2 2.2 4.8E-05 38.1 7.4 58 99-156 57-114 (251)
20 PF05010 TACC: Transforming ac 87.9 6.1 0.00013 36.0 10.1 95 63-157 66-185 (207)
21 COG3883 Uncharacterized protei 87.6 2.6 5.7E-05 39.9 7.8 62 94-155 41-102 (265)
22 PF15619 Lebercilin: Ciliary p 87.6 7.3 0.00016 34.9 10.2 39 127-165 119-157 (194)
23 TIGR02169 SMC_prok_A chromosom 87.5 11 0.00024 38.8 12.7 7 260-266 574-580 (1164)
24 PRK09039 hypothetical protein; 87.3 9.5 0.0002 36.4 11.4 87 69-162 91-187 (343)
25 PF00170 bZIP_1: bZIP transcri 87.1 3.2 7E-05 30.2 6.5 55 107-161 7-61 (64)
26 PF11559 ADIP: Afadin- and alp 86.3 6.8 0.00015 32.4 8.8 64 93-156 82-149 (151)
27 KOG4807 F-actin binding protei 85.6 6.9 0.00015 40.2 10.0 88 63-159 418-538 (593)
28 PF11559 ADIP: Afadin- and alp 85.5 5.9 0.00013 32.8 8.0 74 87-160 55-128 (151)
29 KOG0933 Structural maintenance 85.2 13 0.00028 41.6 12.3 104 23-138 717-827 (1174)
30 PF12325 TMF_TATA_bd: TATA ele 85.1 13 0.00027 31.4 9.8 66 97-162 43-111 (120)
31 PF05701 WEMBL: Weak chloropla 84.8 12 0.00026 37.5 11.2 129 28-161 211-351 (522)
32 PF15290 Syntaphilin: Golgi-lo 84.7 3.3 7.3E-05 40.2 7.0 69 92-167 62-144 (305)
33 PF04111 APG6: Autophagy prote 84.4 8.5 0.00018 36.4 9.5 128 34-178 15-145 (314)
34 PF06818 Fez1: Fez1; InterPro 84.2 4.9 0.00011 36.9 7.5 88 51-138 12-106 (202)
35 PF04156 IncA: IncA protein; 84.1 13 0.00029 31.3 9.7 53 66-118 95-150 (191)
36 cd00632 Prefoldin_beta Prefold 83.8 9.8 0.00021 30.1 8.3 82 79-161 5-98 (105)
37 PF00038 Filament: Intermediat 83.7 18 0.00039 32.6 10.9 94 65-161 164-276 (312)
38 PF10211 Ax_dynein_light: Axon 83.4 14 0.0003 32.7 9.9 104 47-160 64-183 (189)
39 PF09403 FadA: Adhesion protei 83.3 17 0.00036 31.1 9.9 81 77-157 24-117 (126)
40 PF10174 Cast: RIM-binding pro 82.8 8.2 0.00018 41.3 9.6 95 62-160 297-405 (775)
41 TIGR03495 phage_LysB phage lys 82.8 14 0.0003 32.0 9.3 88 76-167 15-102 (135)
42 KOG2751 Beclin-like protein [S 82.4 16 0.00034 37.3 10.9 125 34-178 149-278 (447)
43 TIGR02168 SMC_prok_B chromosom 82.2 28 0.0006 35.7 12.7 12 146-157 385-396 (1179)
44 PF12718 Tropomyosin_1: Tropom 81.9 13 0.00029 31.5 8.9 32 130-161 112-143 (143)
45 KOG0994 Extracellular matrix g 81.9 10 0.00022 43.2 10.1 93 69-163 1655-1747(1758)
46 PF10186 Atg14: UV radiation r 81.6 11 0.00025 32.8 8.6 73 65-137 26-102 (302)
47 smart00338 BRLZ basic region l 80.9 7.4 0.00016 28.3 6.1 54 108-161 8-61 (65)
48 KOG0977 Nuclear envelope prote 80.5 9.2 0.0002 39.6 8.7 109 42-161 49-190 (546)
49 PF05266 DUF724: Protein of un 79.8 18 0.00038 32.4 9.3 56 96-158 122-184 (190)
50 PRK02224 chromosome segregatio 79.7 37 0.00079 35.1 12.7 13 148-160 413-425 (880)
51 PF11500 Cut12: Spindle pole b 78.4 9.2 0.0002 33.8 7.0 67 100-166 79-145 (152)
52 COG1196 Smc Chromosome segrega 78.4 32 0.0007 37.5 12.4 41 195-240 514-554 (1163)
53 PRK10884 SH3 domain-containing 78.3 14 0.00031 33.4 8.3 46 116-161 122-167 (206)
54 smart00787 Spc7 Spc7 kinetocho 78.0 18 0.0004 34.5 9.3 77 82-159 153-237 (312)
55 PRK04863 mukB cell division pr 77.8 25 0.00054 40.2 11.7 46 6-57 277-322 (1486)
56 PF10174 Cast: RIM-binding pro 77.6 25 0.00054 37.8 11.1 45 13-59 288-332 (775)
57 PF13815 Dzip-like_N: Iguana/D 77.6 7.4 0.00016 31.7 5.8 54 103-156 64-117 (118)
58 TIGR01843 type_I_hlyD type I s 77.3 36 0.00078 31.1 10.7 31 144-176 250-280 (423)
59 PF09787 Golgin_A5: Golgin sub 76.5 87 0.0019 31.4 15.8 131 5-136 194-347 (511)
60 TIGR00634 recN DNA repair prot 76.5 15 0.00034 36.6 8.8 80 80-162 145-224 (563)
61 PRK10884 SH3 domain-containing 76.3 12 0.00026 33.8 7.4 63 98-163 93-155 (206)
62 PF10186 Atg14: UV radiation r 76.3 47 0.001 29.0 10.8 87 78-164 57-150 (302)
63 PF14662 CCDC155: Coiled-coil 76.3 6.5 0.00014 36.0 5.6 53 107-159 3-55 (193)
64 TIGR03185 DNA_S_dndD DNA sulfu 76.1 40 0.00087 34.3 11.7 31 128-158 437-467 (650)
65 PRK02224 chromosome segregatio 75.5 31 0.00067 35.6 10.8 56 109-164 346-401 (880)
66 KOG4603 TBP-1 interacting prot 75.3 12 0.00027 34.5 7.1 71 98-169 79-151 (201)
67 COG1196 Smc Chromosome segrega 74.8 34 0.00074 37.3 11.4 40 123-162 797-836 (1163)
68 PRK13454 F0F1 ATP synthase sub 74.4 45 0.00097 29.0 10.1 62 75-136 49-111 (181)
69 PF05667 DUF812: Protein of un 74.1 41 0.00089 35.0 11.3 40 123-162 444-483 (594)
70 PF14931 IFT20: Intraflagellar 73.7 23 0.0005 29.8 7.9 41 116-163 70-110 (120)
71 PF08317 Spc7: Spc7 kinetochor 73.6 78 0.0017 29.8 12.1 74 91-164 209-293 (325)
72 KOG4657 Uncharacterized conser 73.6 33 0.00071 32.7 9.6 10 78-87 24-33 (246)
73 PF10046 BLOC1_2: Biogenesis o 73.3 32 0.00068 27.4 8.2 48 111-158 51-98 (99)
74 PF08317 Spc7: Spc7 kinetochor 73.2 20 0.00044 33.6 8.2 53 110-162 214-266 (325)
75 PF12325 TMF_TATA_bd: TATA ele 73.0 9.7 0.00021 32.1 5.5 62 89-161 21-82 (120)
76 PF04859 DUF641: Plant protein 72.5 7.1 0.00015 33.6 4.7 32 106-137 88-119 (131)
77 cd07658 F-BAR_NOSTRIN The F-BA 72.2 51 0.0011 29.8 10.2 51 126-176 171-221 (239)
78 PRK08475 F0F1 ATP synthase sub 71.9 59 0.0013 27.9 10.1 62 75-136 40-102 (167)
79 KOG0161 Myosin class II heavy 71.7 56 0.0012 38.7 12.6 71 94-164 1044-1121(1930)
80 PF10146 zf-C4H2: Zinc finger- 71.5 42 0.00091 31.0 9.7 51 63-117 36-86 (230)
81 PF11932 DUF3450: Protein of u 71.5 40 0.00087 30.2 9.4 69 102-171 39-107 (251)
82 PF04859 DUF641: Plant protein 71.4 7.3 0.00016 33.5 4.5 49 108-163 76-124 (131)
83 PRK09174 F0F1 ATP synthase sub 71.2 54 0.0012 29.4 10.1 59 74-132 70-129 (204)
84 PRK13729 conjugal transfer pil 71.0 17 0.00038 37.2 7.7 69 85-162 58-126 (475)
85 PRK06231 F0F1 ATP synthase sub 70.8 41 0.00088 30.0 9.2 62 75-136 66-128 (205)
86 KOG1962 B-cell receptor-associ 70.8 11 0.00025 34.9 5.9 58 105-162 151-208 (216)
87 PF03961 DUF342: Protein of un 70.7 21 0.00046 34.6 8.0 68 92-159 335-408 (451)
88 PF14662 CCDC155: Coiled-coil 70.1 88 0.0019 28.9 11.3 127 7-138 34-191 (193)
89 PF05529 Bap31: B-cell recepto 70.1 19 0.00041 30.9 6.8 34 119-159 154-187 (192)
90 PF14988 DUF4515: Domain of un 69.9 29 0.00064 31.3 8.2 48 114-161 49-99 (206)
91 PF14988 DUF4515: Domain of un 69.7 44 0.00094 30.2 9.2 73 77-149 22-108 (206)
92 PF15619 Lebercilin: Ciliary p 69.6 22 0.00047 31.9 7.2 74 86-159 56-130 (194)
93 PF09728 Taxilin: Myosin-like 69.6 70 0.0015 30.4 11.0 70 45-114 110-183 (309)
94 TIGR00606 rad50 rad50. This fa 69.5 84 0.0018 34.9 12.9 113 45-160 694-812 (1311)
95 COG4487 Uncharacterized protei 69.2 34 0.00073 34.9 9.2 52 105-163 93-145 (438)
96 PF12998 ING: Inhibitor of gro 69.2 12 0.00027 28.4 5.0 99 44-158 3-104 (105)
97 PF11544 Spc42p: Spindle pole 68.8 14 0.0003 29.7 5.2 53 109-161 2-54 (76)
98 PF09726 Macoilin: Transmembra 68.5 17 0.00036 38.4 7.2 32 131-162 550-581 (697)
99 PF06785 UPF0242: Uncharacteri 68.5 32 0.00069 34.6 8.7 78 80-157 63-151 (401)
100 PF12329 TMF_DNA_bd: TATA elem 68.1 37 0.00081 26.1 7.4 63 67-136 2-64 (74)
101 PF08614 ATG16: Autophagy prot 68.0 9.4 0.0002 33.2 4.6 90 66-155 81-173 (194)
102 PF04111 APG6: Autophagy prote 67.8 32 0.0007 32.6 8.4 68 90-157 42-109 (314)
103 smart00787 Spc7 Spc7 kinetocho 66.6 51 0.0011 31.6 9.4 17 148-164 272-288 (312)
104 PF08581 Tup_N: Tup N-terminal 66.6 44 0.00096 26.5 7.6 61 98-158 11-75 (79)
105 PF08614 ATG16: Autophagy prot 66.5 36 0.00078 29.6 7.8 22 138-159 135-156 (194)
106 KOG0250 DNA repair protein RAD 66.4 94 0.002 35.1 12.5 50 67-119 366-415 (1074)
107 PF12252 SidE: Dot/Icm substra 66.3 15 0.00033 41.5 6.6 48 123-173 1041-1093(1439)
108 PF05667 DUF812: Protein of un 66.2 22 0.00048 36.9 7.5 61 100-160 323-383 (594)
109 PRK03947 prefoldin subunit alp 66.0 67 0.0015 26.2 8.9 38 123-160 91-128 (140)
110 PF05615 THOC7: Tho complex su 65.2 70 0.0015 26.3 8.9 38 127-164 75-112 (139)
111 KOG0963 Transcription factor/C 65.2 37 0.00079 36.1 8.8 26 133-158 317-342 (629)
112 PRK06569 F0F1 ATP synthase sub 65.0 89 0.0019 27.6 9.9 91 74-164 27-127 (155)
113 PF05266 DUF724: Protein of un 64.8 39 0.00085 30.2 7.9 56 105-160 110-172 (190)
114 KOG0999 Microtubule-associated 64.8 42 0.00091 35.9 9.2 119 38-160 4-141 (772)
115 PF07352 Phage_Mu_Gam: Bacteri 64.8 30 0.00065 29.0 6.8 64 99-168 4-67 (149)
116 KOG0971 Microtubule-associated 64.2 83 0.0018 35.6 11.5 117 28-159 417-551 (1243)
117 PF15294 Leu_zip: Leucine zipp 64.2 44 0.00095 32.1 8.5 91 64-159 130-227 (278)
118 PF07106 TBPIP: Tat binding pr 63.7 54 0.0012 27.7 8.2 47 115-161 112-159 (169)
119 PF01608 I_LWEQ: I/LWEQ domain 63.6 16 0.00035 32.1 5.2 52 105-161 84-139 (152)
120 PRK15422 septal ring assembly 63.2 44 0.00096 27.1 7.1 65 93-157 6-77 (79)
121 PF09730 BicD: Microtubule-ass 63.2 1.4E+02 0.0029 32.3 12.6 27 31-57 289-315 (717)
122 COG1579 Zn-ribbon protein, pos 63.1 1.4E+02 0.0029 28.2 12.0 62 30-91 40-114 (239)
123 PF15290 Syntaphilin: Golgi-lo 63.1 10 0.00022 37.0 4.2 40 122-161 64-103 (305)
124 PF15254 CCDC14: Coiled-coil d 63.1 50 0.0011 36.2 9.5 41 64-105 425-465 (861)
125 PRK03918 chromosome segregatio 62.9 99 0.0022 31.8 11.3 16 40-55 167-182 (880)
126 PF10473 CENP-F_leu_zip: Leuci 62.8 1E+02 0.0023 26.8 11.0 122 28-159 17-138 (140)
127 PF10146 zf-C4H2: Zinc finger- 62.7 1.2E+02 0.0027 28.0 10.9 66 67-136 23-91 (230)
128 PF01920 Prefoldin_2: Prefoldi 62.6 65 0.0014 24.3 8.9 40 123-162 59-98 (106)
129 PRK14473 F0F1 ATP synthase sub 62.6 93 0.002 26.1 10.2 60 75-134 26-86 (164)
130 COG3883 Uncharacterized protei 62.6 40 0.00086 32.2 7.9 65 92-156 32-96 (265)
131 PF09726 Macoilin: Transmembra 62.5 1.3E+02 0.0029 31.9 12.4 38 134-176 630-667 (697)
132 KOG3091 Nuclear pore complex, 62.4 52 0.0011 34.2 9.1 85 76-169 312-411 (508)
133 PRK06975 bifunctional uroporph 62.4 55 0.0012 34.0 9.4 19 77-95 343-361 (656)
134 KOG0996 Structural maintenance 62.3 26 0.00055 39.8 7.4 47 85-131 894-940 (1293)
135 PF14362 DUF4407: Domain of un 62.2 52 0.0011 30.0 8.4 19 143-161 185-203 (301)
136 PRK09039 hypothetical protein; 61.7 86 0.0019 30.1 10.0 59 104-162 115-180 (343)
137 PF06818 Fez1: Fez1; InterPro 60.8 30 0.00065 31.9 6.6 71 94-164 20-104 (202)
138 PRK10869 recombination and rep 60.7 52 0.0011 33.3 8.8 68 95-163 154-221 (553)
139 PF07888 CALCOCO1: Calcium bin 60.5 90 0.002 32.7 10.5 28 30-57 138-165 (546)
140 PF09325 Vps5: Vps5 C terminal 60.3 1.1E+02 0.0024 26.2 11.3 25 67-91 122-146 (236)
141 PF05911 DUF869: Plant protein 60.2 70 0.0015 34.5 10.0 62 98-166 589-650 (769)
142 PF07888 CALCOCO1: Calcium bin 60.2 1E+02 0.0022 32.3 10.9 31 28-58 150-180 (546)
143 PRK14471 F0F1 ATP synthase sub 59.6 1.1E+02 0.0023 25.8 10.1 63 74-136 25-88 (164)
144 PF13870 DUF4201: Domain of un 59.3 1.1E+02 0.0024 26.0 9.8 105 63-169 30-141 (177)
145 PRK14474 F0F1 ATP synthase sub 59.2 1.2E+02 0.0026 27.9 10.2 62 75-136 23-85 (250)
146 KOG1850 Myosin-like coiled-coi 59.2 1.1E+02 0.0025 30.8 10.6 136 44-179 210-351 (391)
147 TIGR02338 gimC_beta prefoldin, 59.2 87 0.0019 25.1 8.2 41 122-162 63-103 (110)
148 CHL00118 atpG ATP synthase CF0 59.2 1.1E+02 0.0023 25.8 10.1 60 75-134 40-100 (156)
149 PF00261 Tropomyosin: Tropomyo 59.0 65 0.0014 28.9 8.3 40 102-141 152-191 (237)
150 PLN03188 kinesin-12 family pro 58.7 76 0.0016 36.5 10.2 102 66-176 1162-1271(1320)
151 PF10234 Cluap1: Clusterin-ass 58.5 99 0.0021 29.5 9.7 20 144-163 201-220 (267)
152 PF06005 DUF904: Protein of un 57.8 24 0.00053 27.4 4.7 49 102-164 8-56 (72)
153 PF12777 MT: Microtubule-bindi 57.7 19 0.00042 33.9 5.0 22 33-56 156-177 (344)
154 KOG0614 cGMP-dependent protein 57.5 19 0.00041 38.4 5.2 55 107-161 19-73 (732)
155 KOG0933 Structural maintenance 56.7 58 0.0013 36.8 8.8 34 143-176 961-994 (1174)
156 CHL00019 atpF ATP synthase CF0 56.6 1.3E+02 0.0028 25.9 10.0 62 74-135 41-103 (184)
157 PF13166 AAA_13: AAA domain 56.2 2.2E+02 0.0048 28.7 12.2 35 128-162 419-453 (712)
158 KOG0946 ER-Golgi vesicle-tethe 56.1 2E+02 0.0044 32.1 12.6 44 91-134 730-773 (970)
159 TIGR03321 alt_F1F0_F0_B altern 56.0 1.5E+02 0.0033 26.7 10.1 60 74-133 22-82 (246)
160 COG4942 Membrane-bound metallo 55.9 74 0.0016 32.3 8.8 73 80-163 38-110 (420)
161 PF02403 Seryl_tRNA_N: Seryl-t 55.8 38 0.00082 26.4 5.6 31 127-157 68-98 (108)
162 PRK13428 F0F1 ATP synthase sub 55.1 1.2E+02 0.0027 30.0 10.1 61 74-134 18-79 (445)
163 TIGR02894 DNA_bind_RsfA transc 54.8 71 0.0015 28.8 7.7 39 120-158 105-143 (161)
164 KOG1899 LAR transmembrane tyro 54.4 3.3E+02 0.0072 30.0 16.0 146 7-164 109-291 (861)
165 TIGR02231 conserved hypothetic 54.2 80 0.0017 31.2 8.7 48 117-164 129-176 (525)
166 TIGR03545 conserved hypothetic 54.1 64 0.0014 33.3 8.3 18 63-80 164-181 (555)
167 PRK14472 F0F1 ATP synthase sub 53.9 1.4E+02 0.003 25.4 10.1 62 74-135 35-97 (175)
168 PF10481 CENP-F_N: Cenp-F N-te 53.6 44 0.00096 32.8 6.6 67 115-185 84-151 (307)
169 PF10234 Cluap1: Clusterin-ass 53.5 44 0.00095 31.8 6.5 75 85-159 163-237 (267)
170 PF15397 DUF4618: Domain of un 53.4 1.7E+02 0.0037 27.9 10.4 89 44-132 8-108 (258)
171 PRK01156 chromosome segregatio 53.2 79 0.0017 33.0 8.9 49 128-176 411-460 (895)
172 TIGR03752 conj_TIGR03752 integ 53.1 88 0.0019 32.3 9.0 59 101-159 76-135 (472)
173 PF09730 BicD: Microtubule-ass 52.9 67 0.0015 34.5 8.4 59 80-138 23-81 (717)
174 cd07596 BAR_SNX The Bin/Amphip 52.8 1.2E+02 0.0027 25.0 8.4 33 24-57 22-54 (218)
175 PRK09841 cryptic autophosphory 52.7 1.8E+02 0.0038 30.3 11.2 131 27-169 273-406 (726)
176 cd07663 BAR_SNX5 The Bin/Amphi 52.5 1.3E+02 0.0029 27.8 9.3 88 68-159 121-217 (218)
177 TIGR01843 type_I_hlyD type I s 51.8 1.5E+02 0.0033 27.1 9.6 6 171-176 269-274 (423)
178 TIGR01554 major_cap_HK97 phage 51.5 48 0.001 31.1 6.5 36 98-133 27-62 (378)
179 PRK01156 chromosome segregatio 51.4 1E+02 0.0022 32.2 9.4 20 98-117 643-662 (895)
180 KOG4643 Uncharacterized coiled 51.4 3.2E+02 0.007 31.3 13.3 69 20-96 463-531 (1195)
181 PF09325 Vps5: Vps5 C terminal 51.3 50 0.0011 28.3 6.0 49 96-144 133-181 (236)
182 PF07798 DUF1640: Protein of u 51.2 1.6E+02 0.0035 25.4 9.4 33 144-176 135-167 (177)
183 PF03962 Mnd1: Mnd1 family; I 51.0 74 0.0016 28.2 7.2 27 93-119 71-97 (188)
184 TIGR02680 conserved hypothetic 50.9 1E+02 0.0023 34.6 9.8 42 31-72 209-253 (1353)
185 COG0216 PrfA Protein chain rel 50.5 1E+02 0.0022 31.0 8.7 88 64-163 15-106 (363)
186 PF08826 DMPK_coil: DMPK coile 50.4 66 0.0014 24.5 5.9 31 131-161 30-60 (61)
187 PRK10636 putative ABC transpor 50.2 82 0.0018 32.1 8.3 66 94-159 559-631 (638)
188 KOG0239 Kinesin (KAR3 subfamil 50.2 92 0.002 33.0 8.8 48 115-162 230-277 (670)
189 PF08172 CASP_C: CASP C termin 49.9 80 0.0017 29.4 7.6 34 129-162 89-122 (248)
190 PF12777 MT: Microtubule-bindi 49.8 93 0.002 29.5 8.1 38 96-133 219-256 (344)
191 KOG4398 Predicted coiled-coil 49.8 34 0.00073 33.9 5.3 77 85-176 21-97 (359)
192 PF11945 WASH_WAHD: WAHD domai 49.6 54 0.0012 31.4 6.5 58 105-165 18-75 (297)
193 PF00769 ERM: Ezrin/radixin/mo 49.5 62 0.0013 29.7 6.7 63 92-161 51-117 (246)
194 PRK11519 tyrosine kinase; Prov 49.0 1.7E+02 0.0038 30.4 10.5 128 28-167 274-404 (719)
195 PF10805 DUF2730: Protein of u 49.0 1.4E+02 0.0031 24.1 9.5 65 96-160 33-99 (106)
196 TIGR01000 bacteriocin_acc bact 48.9 1.3E+02 0.0027 29.3 9.0 51 68-118 142-192 (457)
197 PRK12704 phosphodiesterase; Pr 48.7 1.5E+02 0.0033 30.2 9.8 12 224-235 225-236 (520)
198 COG5185 HEC1 Protein involved 48.6 3.5E+02 0.0076 28.8 12.4 22 36-57 219-240 (622)
199 KOG0161 Myosin class II heavy 48.6 2.4E+02 0.0053 33.8 12.4 19 22-40 839-857 (1930)
200 PF14197 Cep57_CLD_2: Centroso 48.5 82 0.0018 24.2 6.2 54 100-160 14-67 (69)
201 PF04912 Dynamitin: Dynamitin 48.5 2.6E+02 0.0056 26.9 11.6 121 31-158 250-386 (388)
202 PF07200 Mod_r: Modifier of ru 48.3 91 0.002 25.6 6.9 60 100-159 29-88 (150)
203 PRK05759 F0F1 ATP synthase sub 48.1 1.5E+02 0.0033 24.2 10.1 60 75-134 22-82 (156)
204 KOG0971 Microtubule-associated 48.1 1.7E+02 0.0036 33.3 10.5 63 80-142 300-362 (1243)
205 PRK14139 heat shock protein Gr 48.0 23 0.0005 31.8 3.6 31 106-136 33-63 (185)
206 PF10018 Med4: Vitamin-D-recep 47.9 43 0.00094 29.2 5.2 73 108-183 25-99 (188)
207 KOG0995 Centromere-associated 47.8 63 0.0014 34.1 7.1 43 79-121 282-324 (581)
208 PF07227 DUF1423: Protein of u 47.7 1.6E+02 0.0035 30.3 9.8 86 22-136 358-443 (446)
209 PF05600 DUF773: Protein of un 47.3 2.9E+02 0.0062 28.3 11.5 128 18-147 353-488 (507)
210 KOG3647 Predicted coiled-coil 47.3 1.1E+02 0.0024 30.2 8.3 76 79-161 48-154 (338)
211 PRK15422 septal ring assembly 47.0 42 0.0009 27.2 4.6 41 117-164 9-49 (79)
212 KOG4674 Uncharacterized conser 46.7 1.3E+02 0.0029 35.7 10.0 96 66-161 1167-1285(1822)
213 PF04102 SlyX: SlyX; InterPro 46.5 86 0.0019 23.6 6.0 41 114-161 6-46 (69)
214 cd07627 BAR_Vps5p The Bin/Amph 46.4 2.1E+02 0.0045 25.3 9.3 15 42-56 39-53 (216)
215 PF13863 DUF4200: Domain of un 46.0 1.5E+02 0.0032 23.5 9.1 30 135-164 69-98 (126)
216 PF12128 DUF3584: Protein of u 46.0 81 0.0018 34.8 8.0 9 49-57 540-548 (1201)
217 PF07334 IFP_35_N: Interferon- 45.9 36 0.00077 27.3 4.0 19 144-162 11-29 (76)
218 PF12711 Kinesin-relat_1: Kine 45.3 28 0.0006 28.3 3.4 12 125-136 2-13 (86)
219 KOG2398 Predicted proline-seri 45.2 1.3E+02 0.0028 31.7 8.9 25 139-163 163-187 (611)
220 KOG3119 Basic region leucine z 45.1 65 0.0014 30.0 6.2 61 87-164 193-253 (269)
221 KOG0976 Rho/Rac1-interacting s 44.7 1.8E+02 0.0039 32.9 10.1 89 27-116 105-201 (1265)
222 COG3879 Uncharacterized protei 44.5 63 0.0014 30.7 6.1 63 109-176 54-116 (247)
223 TIGR03319 YmdA_YtgF conserved 44.3 1.9E+02 0.0042 29.4 9.8 12 224-235 219-230 (514)
224 COG4942 Membrane-bound metallo 44.1 1.2E+02 0.0027 30.8 8.3 64 63-137 42-105 (420)
225 cd07621 BAR_SNX5_6 The Bin/Amp 44.0 2.1E+02 0.0045 26.5 9.2 88 68-159 122-218 (219)
226 cd07651 F-BAR_PombeCdc15_like 43.9 1.1E+02 0.0023 27.1 7.2 34 127-160 151-184 (236)
227 PRK14158 heat shock protein Gr 43.7 32 0.0007 31.1 3.9 33 128-160 42-74 (194)
228 PF05701 WEMBL: Weak chloropla 43.6 2.3E+02 0.0049 28.7 10.1 136 23-162 283-429 (522)
229 PF03962 Mnd1: Mnd1 family; I 43.6 1.6E+02 0.0034 26.2 8.1 16 144-159 146-161 (188)
230 PRK04778 septation ring format 43.4 3.7E+02 0.008 27.3 12.3 23 35-57 317-339 (569)
231 PF10046 BLOC1_2: Biogenesis o 43.4 1.1E+02 0.0023 24.5 6.4 46 92-137 53-98 (99)
232 PRK08476 F0F1 ATP synthase sub 43.2 2E+02 0.0043 24.1 10.1 43 74-116 24-66 (141)
233 PRK00846 hypothetical protein; 43.1 90 0.0019 24.9 5.8 54 110-163 11-64 (77)
234 smart00502 BBC B-Box C-termina 42.9 1.4E+02 0.0031 22.4 10.1 71 70-140 11-86 (127)
235 KOG0980 Actin-binding protein 42.9 1.6E+02 0.0034 33.0 9.4 86 79-165 423-526 (980)
236 PRK06568 F0F1 ATP synthase sub 42.6 2.3E+02 0.0051 24.8 10.0 60 74-133 21-81 (154)
237 PF00769 ERM: Ezrin/radixin/mo 42.5 1.6E+02 0.0035 27.1 8.2 38 102-139 79-116 (246)
238 PF05557 MAD: Mitotic checkpoi 42.5 8.3 0.00018 39.7 0.0 117 41-160 60-198 (722)
239 PF10211 Ax_dynein_light: Axon 42.1 1.5E+02 0.0032 26.3 7.7 64 88-158 124-188 (189)
240 PF06548 Kinesin-related: Kine 41.9 1.8E+02 0.004 30.3 9.2 20 137-156 463-482 (488)
241 PF03938 OmpH: Outer membrane 41.8 1.3E+02 0.0029 24.4 6.9 16 155-172 121-136 (158)
242 PRK13453 F0F1 ATP synthase sub 41.6 2.3E+02 0.0049 24.3 10.1 61 75-135 36-97 (173)
243 PF05529 Bap31: B-cell recepto 41.4 1.1E+02 0.0023 26.4 6.5 18 144-161 165-182 (192)
244 PRK14146 heat shock protein Gr 41.4 41 0.00089 30.8 4.3 41 121-161 49-89 (215)
245 TIGR03752 conj_TIGR03752 integ 41.1 1.4E+02 0.003 30.9 8.3 83 80-170 66-155 (472)
246 PF14915 CCDC144C: CCDC144C pr 41.0 2.5E+02 0.0053 27.8 9.6 94 66-163 6-100 (305)
247 PF05837 CENP-H: Centromere pr 40.8 2E+02 0.0042 23.3 8.2 63 99-162 11-73 (106)
248 PRK04863 mukB cell division pr 40.5 6.6E+02 0.014 29.4 14.0 34 129-162 445-478 (1486)
249 PF03399 SAC3_GANP: SAC3/GANP/ 40.5 89 0.0019 26.1 5.8 18 74-91 30-47 (204)
250 KOG2129 Uncharacterized conser 40.3 1.7E+02 0.0037 30.6 8.7 135 38-175 60-233 (552)
251 KOG4673 Transcription factor T 40.2 4.6E+02 0.01 29.3 12.1 55 100-154 490-544 (961)
252 PF15272 BBP1_C: Spindle pole 40.2 3E+02 0.0066 25.4 9.5 30 117-146 98-127 (196)
253 cd07664 BAR_SNX2 The Bin/Amphi 40.1 2.4E+02 0.0052 26.0 9.0 15 42-56 57-71 (234)
254 PRK14162 heat shock protein Gr 40.1 36 0.00079 30.8 3.7 27 110-136 44-70 (194)
255 PF14073 Cep57_CLD: Centrosome 39.9 1.1E+02 0.0024 27.9 6.6 74 89-162 9-86 (178)
256 COG1842 PspA Phage shock prote 39.9 1.4E+02 0.0031 27.5 7.4 56 97-159 84-139 (225)
257 PRK13460 F0F1 ATP synthase sub 39.7 2.4E+02 0.0052 24.1 10.1 62 74-135 33-95 (173)
258 COG5185 HEC1 Protein involved 39.7 76 0.0017 33.5 6.2 48 79-126 318-365 (622)
259 PRK05724 acetyl-CoA carboxylas 39.5 42 0.00091 32.6 4.2 24 146-169 34-57 (319)
260 PRK04406 hypothetical protein; 39.5 1.3E+02 0.0028 23.4 6.2 43 110-159 9-51 (75)
261 PF09304 Cortex-I_coil: Cortex 39.4 2.4E+02 0.0052 24.0 9.0 72 69-144 5-76 (107)
262 cd07623 BAR_SNX1_2 The Bin/Amp 39.3 2.8E+02 0.006 24.8 9.0 12 44-55 49-60 (224)
263 TIGR01144 ATP_synt_b ATP synth 39.1 2.1E+02 0.0046 23.3 9.7 61 75-135 13-74 (147)
264 PF00804 Syntaxin: Syntaxin; 39.1 1.3E+02 0.0027 22.1 5.9 26 137-162 46-71 (103)
265 PF07111 HCR: Alpha helical co 39.0 2.7E+02 0.0058 30.5 10.2 70 86-164 584-656 (739)
266 PF10376 Mei5: Double-strand r 38.8 76 0.0016 29.2 5.6 49 110-158 136-192 (221)
267 PF10481 CENP-F_N: Cenp-F N-te 38.7 75 0.0016 31.2 5.7 61 102-162 15-75 (307)
268 PRK00409 recombination and DNA 38.5 1.7E+02 0.0036 31.3 8.7 18 119-136 559-576 (782)
269 CHL00198 accA acetyl-CoA carbo 38.4 41 0.00089 32.8 4.0 16 258-273 152-167 (322)
270 PF04880 NUDE_C: NUDE protein, 38.2 50 0.0011 29.5 4.2 16 99-114 8-23 (166)
271 PRK10698 phage shock protein P 38.0 3.1E+02 0.0067 24.9 9.4 41 124-164 97-137 (222)
272 COG3524 KpsE Capsule polysacch 37.6 2.9E+02 0.0063 27.9 9.6 93 68-162 158-266 (372)
273 COG4026 Uncharacterized protei 37.4 3.2E+02 0.0068 26.7 9.5 52 108-159 152-203 (290)
274 PRK12704 phosphodiesterase; Pr 37.2 2.4E+02 0.0051 28.9 9.2 30 170-203 197-226 (520)
275 cd07664 BAR_SNX2 The Bin/Amphi 36.7 3.4E+02 0.0074 25.0 10.7 23 68-90 121-143 (234)
276 PRK14163 heat shock protein Gr 36.7 40 0.00086 31.2 3.4 27 110-136 45-71 (214)
277 PRK04778 septation ring format 36.4 2.8E+02 0.0061 28.1 9.6 60 103-162 353-412 (569)
278 PF13747 DUF4164: Domain of un 36.3 1.9E+02 0.0041 23.1 6.8 25 129-153 35-59 (89)
279 TIGR00998 8a0101 efflux pump m 36.3 2.3E+02 0.0049 25.5 8.1 6 194-199 210-215 (334)
280 cd00890 Prefoldin Prefoldin is 36.3 2.1E+02 0.0045 22.4 8.8 37 125-161 86-122 (129)
281 PF15397 DUF4618: Domain of un 36.2 2.3E+02 0.005 27.1 8.4 33 125-164 192-224 (258)
282 PTZ00419 valyl-tRNA synthetase 36.1 1.4E+02 0.0031 32.3 7.9 58 96-160 927-991 (995)
283 KOG2129 Uncharacterized conser 36.0 5.5E+02 0.012 27.1 13.4 23 180-202 374-396 (552)
284 PF06476 DUF1090: Protein of u 36.0 1.2E+02 0.0026 25.4 5.8 45 91-137 63-107 (115)
285 PRK07353 F0F1 ATP synthase sub 35.9 2.3E+02 0.0051 22.8 10.1 60 75-134 23-83 (140)
286 PF00430 ATP-synt_B: ATP synth 35.9 2.1E+02 0.0046 22.3 7.7 42 75-116 17-58 (132)
287 PF03245 Phage_lysis: Bacterio 35.9 2.2E+02 0.0047 23.8 7.4 38 144-187 46-83 (125)
288 smart00307 ILWEQ I/LWEQ domain 35.7 1.1E+02 0.0024 28.1 6.1 56 102-162 128-188 (200)
289 PRK14143 heat shock protein Gr 35.7 49 0.0011 30.8 3.9 27 110-136 72-98 (238)
290 PRK13729 conjugal transfer pil 35.6 83 0.0018 32.4 5.8 38 125-162 82-119 (475)
291 PF02403 Seryl_tRNA_N: Seryl-t 35.4 2.1E+02 0.0046 22.2 7.4 59 103-161 34-95 (108)
292 PF09798 LCD1: DNA damage chec 35.3 52 0.0011 35.0 4.4 20 117-136 6-25 (654)
293 COG2433 Uncharacterized conser 35.0 1.2E+02 0.0025 32.7 6.8 64 100-163 424-497 (652)
294 PF13094 CENP-Q: CENP-Q, a CEN 35.0 2.1E+02 0.0046 24.0 7.2 36 86-121 19-57 (160)
295 PF06103 DUF948: Bacterial pro 34.6 1.9E+02 0.0041 22.0 6.3 53 88-140 30-82 (90)
296 PF14932 HAUS-augmin3: HAUS au 34.5 3.4E+02 0.0073 24.9 9.0 16 45-60 6-21 (256)
297 PRK07352 F0F1 ATP synthase sub 34.4 2.9E+02 0.0063 23.5 10.0 59 77-135 39-98 (174)
298 TIGR01069 mutS2 MutS2 family p 34.3 2.1E+02 0.0045 30.6 8.6 25 92-116 519-543 (771)
299 TIGR02977 phageshock_pspA phag 34.3 3.4E+02 0.0073 24.2 9.4 40 125-164 98-137 (219)
300 PRK14145 heat shock protein Gr 34.3 58 0.0013 29.7 4.0 28 108-135 48-75 (196)
301 PF14362 DUF4407: Domain of un 34.2 2E+02 0.0044 26.2 7.5 41 123-170 132-172 (301)
302 KOG4674 Uncharacterized conser 34.2 3.6E+02 0.0077 32.4 10.9 124 30-160 124-251 (1822)
303 PRK09778 putative antitoxin of 33.6 47 0.001 27.9 3.0 19 30-48 78-96 (97)
304 PF08657 DASH_Spc34: DASH comp 33.5 1.3E+02 0.0028 28.3 6.3 56 67-138 158-213 (259)
305 PF04102 SlyX: SlyX; InterPro 33.3 80 0.0017 23.8 4.0 31 106-136 12-42 (69)
306 TIGR01730 RND_mfp RND family e 32.9 3.4E+02 0.0073 23.8 9.5 31 125-162 101-131 (322)
307 PRK14148 heat shock protein Gr 32.9 60 0.0013 29.5 3.9 10 126-135 61-70 (195)
308 PF10473 CENP-F_leu_zip: Leuci 32.8 3.3E+02 0.0072 23.7 9.8 27 70-96 14-40 (140)
309 cd07665 BAR_SNX1 The Bin/Amphi 32.8 4.1E+02 0.0088 24.7 9.3 14 44-57 59-72 (234)
310 TIGR01005 eps_transp_fam exopo 32.5 5.8E+02 0.013 26.4 14.4 19 95-113 313-331 (754)
311 PF04849 HAP1_N: HAP1 N-termin 32.3 2.4E+02 0.0052 27.6 8.0 58 103-160 211-268 (306)
312 KOG2629 Peroxisomal membrane a 32.2 2.6E+02 0.0056 27.6 8.2 64 97-160 131-195 (300)
313 PF11221 Med21: Subunit 21 of 32.0 1.5E+02 0.0033 25.0 5.9 72 76-158 65-136 (144)
314 KOG1029 Endocytic adaptor prot 31.9 2.7E+02 0.0058 31.4 9.0 47 114-160 530-576 (1118)
315 PRK13461 F0F1 ATP synthase sub 31.8 3E+02 0.0066 22.9 10.1 61 75-135 23-84 (159)
316 PRK04325 hypothetical protein; 31.8 1.8E+02 0.0039 22.4 5.8 28 125-159 22-49 (74)
317 COG4026 Uncharacterized protei 31.7 1.2E+02 0.0027 29.4 5.9 9 102-110 167-175 (290)
318 PRK05431 seryl-tRNA synthetase 31.5 1.7E+02 0.0036 28.9 7.0 30 130-159 70-99 (425)
319 PF00038 Filament: Intermediat 31.4 4E+02 0.0086 24.1 10.6 86 76-161 189-290 (312)
320 KOG0240 Kinesin (SMY1 subfamil 31.3 7E+02 0.015 26.9 12.7 34 2-35 338-374 (607)
321 PF00170 bZIP_1: bZIP transcri 30.9 2.1E+02 0.0045 20.7 6.1 12 144-155 51-62 (64)
322 COG5293 Predicted ATPase [Gene 30.9 2.4E+02 0.0053 29.8 8.2 28 131-158 340-367 (591)
323 PF09787 Golgin_A5: Golgin sub 30.9 5.4E+02 0.012 25.9 10.5 6 170-175 341-346 (511)
324 PRK11546 zraP zinc resistance 30.8 1.5E+02 0.0033 26.0 5.9 18 147-164 96-113 (143)
325 PF13805 Pil1: Eisosome compon 30.7 4.7E+02 0.01 25.2 9.6 119 38-176 92-213 (271)
326 PF05008 V-SNARE: Vesicle tran 30.7 2.2E+02 0.0048 20.9 7.5 55 95-156 22-77 (79)
327 TIGR00513 accA acetyl-CoA carb 30.6 76 0.0017 30.8 4.4 25 249-273 137-164 (316)
328 PF12709 Kinetocho_Slk19: Cent 30.6 3.1E+02 0.0066 22.6 8.2 31 131-161 47-77 (87)
329 PRK00295 hypothetical protein; 30.5 91 0.002 23.7 4.0 28 125-159 18-45 (68)
330 PRK14144 heat shock protein Gr 30.4 62 0.0013 29.6 3.6 6 79-84 9-14 (199)
331 COG0419 SbcC ATPase involved i 30.4 2.8E+02 0.0061 29.6 8.8 113 42-160 586-701 (908)
332 KOG0979 Structural maintenance 30.3 3.2E+02 0.007 31.1 9.4 44 47-90 227-272 (1072)
333 PRK00888 ftsB cell division pr 30.3 70 0.0015 26.0 3.5 20 98-117 34-53 (105)
334 KOG0977 Nuclear envelope prote 30.2 6.8E+02 0.015 26.5 12.8 32 29-60 93-124 (546)
335 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.2 3.1E+02 0.0068 22.6 10.3 22 140-161 91-112 (132)
336 PRK14151 heat shock protein Gr 29.8 56 0.0012 29.0 3.1 28 109-136 24-51 (176)
337 KOG0993 Rab5 GTPase effector R 29.8 2.6E+02 0.0056 29.3 8.1 24 28-51 24-47 (542)
338 PF14282 FlxA: FlxA-like prote 29.8 2.4E+02 0.0053 22.8 6.6 56 97-159 18-77 (106)
339 PLN02678 seryl-tRNA synthetase 29.8 1.9E+02 0.0041 29.2 7.1 32 128-159 73-104 (448)
340 PF10498 IFT57: Intra-flagella 29.6 4.1E+02 0.0089 26.1 9.2 74 87-160 237-314 (359)
341 PF10498 IFT57: Intra-flagella 29.6 4.4E+02 0.0096 25.9 9.4 14 145-158 333-346 (359)
342 PRK14147 heat shock protein Gr 29.5 52 0.0011 29.1 2.8 31 125-165 38-68 (172)
343 PHA03332 membrane glycoprotein 29.5 2.3E+02 0.0049 32.7 8.1 57 98-157 891-947 (1328)
344 PF10168 Nup88: Nuclear pore c 29.3 4.9E+02 0.011 27.9 10.3 25 137-161 689-713 (717)
345 PF10205 KLRAQ: Predicted coil 29.3 1.4E+02 0.0029 25.2 5.1 67 87-157 5-71 (102)
346 PF12562 DUF3746: Protein of u 29.2 22 0.00049 25.3 0.4 12 275-286 1-12 (37)
347 PRK00106 hypothetical protein; 29.2 4.6E+02 0.01 27.3 9.8 12 224-235 240-251 (535)
348 PRK14140 heat shock protein Gr 29.0 91 0.002 28.2 4.4 29 107-135 39-67 (191)
349 KOG4552 Vitamin-D-receptor int 29.0 1.7E+02 0.0038 28.1 6.3 54 87-140 46-102 (272)
350 TIGR01554 major_cap_HK97 phage 28.9 2E+02 0.0042 27.2 6.7 14 125-138 26-39 (378)
351 KOG0018 Structural maintenance 28.8 1.4E+02 0.003 34.0 6.4 114 33-158 165-287 (1141)
352 KOG2264 Exostosin EXT1L [Signa 28.8 1.1E+02 0.0024 33.2 5.5 45 118-162 99-150 (907)
353 KOG0978 E3 ubiquitin ligase in 28.8 3.3E+02 0.0071 29.6 8.9 53 105-164 573-625 (698)
354 PF05483 SCP-1: Synaptonemal c 28.8 3.8E+02 0.0082 29.6 9.3 47 116-162 244-304 (786)
355 COG4575 ElaB Uncharacterized c 28.7 1.5E+02 0.0033 25.1 5.3 52 101-155 11-63 (104)
356 PRK14127 cell division protein 28.6 2.1E+02 0.0045 24.0 6.1 10 127-136 52-61 (109)
357 TIGR00414 serS seryl-tRNA synt 28.6 2E+02 0.0043 28.3 6.9 9 262-270 228-236 (418)
358 KOG4552 Vitamin-D-receptor int 28.5 2E+02 0.0043 27.7 6.6 77 33-118 10-101 (272)
359 COG1579 Zn-ribbon protein, pos 28.3 5.2E+02 0.011 24.5 11.1 30 198-236 179-209 (239)
360 PRK14154 heat shock protein Gr 28.2 65 0.0014 29.6 3.3 29 108-136 55-83 (208)
361 PRK14160 heat shock protein Gr 28.0 3.3E+02 0.0071 25.2 7.8 41 95-135 51-91 (211)
362 PRK13182 racA polar chromosome 27.8 1.7E+02 0.0037 26.0 5.8 33 101-133 88-120 (175)
363 COG3937 Uncharacterized conser 27.1 2.3E+02 0.0049 24.3 6.1 62 93-160 34-103 (108)
364 COG3355 Predicted transcriptio 27.1 53 0.0011 28.3 2.4 26 20-45 20-49 (126)
365 KOG1666 V-SNARE [Intracellular 27.0 5E+02 0.011 24.7 8.8 25 143-168 75-99 (220)
366 PRK00736 hypothetical protein; 26.9 1.1E+02 0.0025 23.2 4.0 28 125-159 18-45 (68)
367 PLN03230 acetyl-coenzyme A car 26.8 83 0.0018 32.1 4.1 14 260-273 221-234 (431)
368 PRK05431 seryl-tRNA synthetase 26.6 2.6E+02 0.0057 27.6 7.3 63 103-165 33-98 (425)
369 PRK00409 recombination and DNA 26.5 5.4E+02 0.012 27.6 10.0 87 22-114 496-582 (782)
370 PRK02119 hypothetical protein; 26.5 3E+02 0.0064 21.3 6.2 29 125-160 22-50 (73)
371 COG5374 Uncharacterized conser 26.5 2.2E+02 0.0048 26.5 6.3 28 92-119 137-164 (192)
372 KOG0978 E3 ubiquitin ligase in 26.4 5.2E+02 0.011 28.1 9.9 33 63-95 311-343 (698)
373 TIGR03319 YmdA_YtgF conserved 26.1 5.2E+02 0.011 26.4 9.5 6 197-202 214-219 (514)
374 PRK00295 hypothetical protein; 26.0 2.7E+02 0.0058 21.2 5.8 25 129-153 8-32 (68)
375 KOG4593 Mitotic checkpoint pro 26.0 7E+02 0.015 27.4 10.7 32 137-168 272-303 (716)
376 PF10205 KLRAQ: Predicted coil 25.9 4E+02 0.0088 22.4 8.0 37 132-169 25-61 (102)
377 PRK13455 F0F1 ATP synthase sub 25.7 4.3E+02 0.0093 22.7 9.5 60 75-135 44-106 (184)
378 cd00632 Prefoldin_beta Prefold 25.3 1.1E+02 0.0024 24.1 3.8 6 151-156 95-100 (105)
379 PF07795 DUF1635: Protein of u 25.2 2E+02 0.0044 26.9 5.9 53 108-160 8-60 (214)
380 PRK14900 valS valyl-tRNA synth 25.1 2.5E+02 0.0054 31.1 7.5 62 96-164 840-908 (1052)
381 KOG0979 Structural maintenance 25.0 7.2E+02 0.016 28.5 10.9 66 98-163 262-334 (1072)
382 PRK14155 heat shock protein Gr 24.9 58 0.0013 29.8 2.4 48 108-165 16-63 (208)
383 PF10267 Tmemb_cc2: Predicted 24.8 6.3E+02 0.014 25.5 9.6 16 125-140 275-290 (395)
384 PF06810 Phage_GP20: Phage min 24.6 3E+02 0.0065 23.8 6.6 15 129-143 54-68 (155)
385 TIGR03156 GTP_HflX GTP-binding 24.6 84 0.0018 29.9 3.5 103 62-164 52-178 (351)
386 PF05791 Bacillus_HBL: Bacillu 24.6 4.8E+02 0.01 22.8 8.5 29 134-162 150-178 (184)
387 PF06810 Phage_GP20: Phage min 24.4 2.3E+02 0.005 24.5 5.8 21 149-169 118-138 (155)
388 PF12240 Angiomotin_C: Angiomo 24.3 1.9E+02 0.0041 27.1 5.5 42 105-163 3-44 (205)
389 PLN02943 aminoacyl-tRNA ligase 24.3 2.9E+02 0.0063 30.2 7.7 59 96-161 887-952 (958)
390 PRK05771 V-type ATP synthase s 24.3 1.9E+02 0.0042 29.5 6.1 39 126-164 93-131 (646)
391 KOG0980 Actin-binding protein 24.2 3.5E+02 0.0075 30.5 8.3 29 85-113 488-516 (980)
392 TIGR01000 bacteriocin_acc bact 24.2 6.7E+02 0.015 24.4 9.8 20 99-118 237-256 (457)
393 PRK00736 hypothetical protein; 24.2 3E+02 0.0064 21.0 5.7 31 128-158 7-37 (68)
394 COG1344 FlgL Flagellin and rel 24.0 4.4E+02 0.0096 25.0 8.1 80 76-163 43-128 (360)
395 PRK14159 heat shock protein Gr 24.0 1.2E+02 0.0026 27.1 4.1 30 125-161 29-58 (176)
396 PRK14475 F0F1 ATP synthase sub 23.7 4.6E+02 0.0099 22.3 10.0 60 75-135 28-89 (167)
397 cd00890 Prefoldin Prefoldin is 23.7 1.2E+02 0.0025 23.8 3.6 30 106-135 95-124 (129)
398 PF07716 bZIP_2: Basic region 23.6 2.7E+02 0.0059 19.7 5.7 42 112-160 11-52 (54)
399 TIGR02231 conserved hypothetic 23.6 3.8E+02 0.0083 26.6 7.9 31 134-164 139-169 (525)
400 COG3074 Uncharacterized protei 23.5 1.4E+02 0.0031 24.2 4.1 45 114-165 6-50 (79)
401 PF07412 Geminin: Geminin; In 23.5 2.7E+02 0.0058 25.9 6.3 35 102-136 115-149 (200)
402 PRK14149 heat shock protein Gr 23.5 1E+02 0.0022 28.0 3.7 30 125-161 42-71 (191)
403 PF10828 DUF2570: Protein of u 23.5 3.3E+02 0.0071 22.0 6.2 11 76-86 18-28 (110)
404 PRK14160 heat shock protein Gr 23.4 1.1E+02 0.0024 28.2 3.9 18 144-161 79-96 (211)
405 PF15070 GOLGA2L5: Putative go 23.4 5.5E+02 0.012 27.2 9.3 40 76-118 24-63 (617)
406 PF07139 DUF1387: Protein of u 23.3 6.1E+02 0.013 25.0 9.0 75 76-152 190-268 (302)
407 KOG0288 WD40 repeat protein Ti 23.2 2.7E+02 0.0058 28.9 6.8 12 122-133 51-62 (459)
408 PF05278 PEARLI-4: Arabidopsis 23.2 3.9E+02 0.0084 25.9 7.5 20 36-55 143-162 (269)
409 KOG4593 Mitotic checkpoint pro 23.2 4.3E+02 0.0094 28.9 8.6 49 107-155 121-173 (716)
410 PRK03992 proteasome-activating 23.1 1.6E+02 0.0036 28.2 5.1 49 127-176 16-64 (389)
411 KOG3990 Uncharacterized conser 23.0 1.8E+02 0.004 28.5 5.4 44 121-164 248-298 (305)
412 PF05757 PsbQ: Oxygen evolving 22.9 2.1E+02 0.0045 26.3 5.5 60 68-129 115-183 (202)
413 PF05130 FlgN: FlgN protein; 22.8 3.5E+02 0.0076 20.6 9.1 30 66-95 37-66 (143)
414 PRK04325 hypothetical protein; 22.7 1.5E+02 0.0033 22.9 4.0 33 128-160 11-43 (74)
415 PRK09343 prefoldin subunit bet 22.5 4.5E+02 0.0097 21.7 8.2 39 122-160 67-105 (121)
416 PF09731 Mitofilin: Mitochondr 22.4 4.5E+02 0.0096 26.3 8.1 21 40-60 221-241 (582)
417 PTZ00454 26S protease regulato 22.4 1.6E+02 0.0034 28.9 4.9 36 127-162 30-65 (398)
418 PF09763 Sec3_C: Exocyst compl 22.1 7.5E+02 0.016 25.6 9.9 80 81-160 13-95 (701)
419 PF03271 EB1: EB1-like C-termi 22.0 63 0.0014 22.9 1.6 17 71-87 2-18 (43)
420 PF08581 Tup_N: Tup N-terminal 22.0 4.1E+02 0.0089 21.1 7.4 48 86-136 27-74 (79)
421 COG1510 Predicted transcriptio 21.9 2.1E+02 0.0046 26.2 5.3 75 95-176 101-175 (177)
422 KOG0243 Kinesin-like protein [ 21.9 1.2E+03 0.027 26.7 14.7 105 63-167 504-613 (1041)
423 PF13815 Dzip-like_N: Iguana/D 21.9 2.3E+02 0.005 23.1 5.1 35 100-134 82-116 (118)
424 KOG2751 Beclin-like protein [S 21.9 3.6E+02 0.0078 27.9 7.4 27 252-279 335-361 (447)
425 PF04350 PilO: Pilus assembly 21.8 1.7E+02 0.0037 23.2 4.2 41 127-168 31-71 (144)
426 TIGR01069 mutS2 MutS2 family p 21.8 4.1E+02 0.0089 28.5 8.1 24 93-116 527-550 (771)
427 PF10018 Med4: Vitamin-D-recep 21.7 3.4E+02 0.0073 23.7 6.4 45 110-162 14-58 (188)
428 PF04420 CHD5: CHD5-like prote 21.7 2.3E+02 0.005 24.4 5.3 54 99-161 41-94 (161)
429 KOG0964 Structural maintenance 21.7 6E+02 0.013 29.3 9.5 106 65-170 271-388 (1200)
430 PF01025 GrpE: GrpE; InterPro 21.6 22 0.00048 29.4 -0.9 11 202-212 105-115 (165)
431 TIGR02971 heterocyst_DevB ABC 21.6 3.8E+02 0.0082 24.3 6.9 19 192-210 208-226 (327)
432 PF10883 DUF2681: Protein of u 21.5 2.3E+02 0.005 23.1 4.9 23 100-122 25-47 (87)
433 PRK02119 hypothetical protein; 21.4 1.7E+02 0.0036 22.6 4.0 33 127-159 10-42 (73)
434 PF06632 XRCC4: DNA double-str 21.3 4.1E+02 0.0088 26.1 7.5 22 140-161 187-208 (342)
435 PF00261 Tropomyosin: Tropomyo 21.2 6.1E+02 0.013 22.8 11.6 30 31-60 25-54 (237)
436 PF05377 FlaC_arch: Flagella a 21.2 1.3E+02 0.0028 22.9 3.2 13 146-158 20-32 (55)
437 PF13870 DUF4201: Domain of un 21.1 5.2E+02 0.011 22.0 10.5 25 64-88 4-28 (177)
438 PF15070 GOLGA2L5: Putative go 21.1 4.8E+02 0.01 27.6 8.3 32 105-136 101-132 (617)
439 PF07798 DUF1640: Protein of u 21.1 5.4E+02 0.012 22.2 8.2 56 41-98 50-105 (177)
440 PF05278 PEARLI-4: Arabidopsis 21.0 6.2E+02 0.014 24.5 8.4 11 93-103 171-181 (269)
441 PF02994 Transposase_22: L1 tr 21.0 1.4E+02 0.0029 29.1 4.2 81 78-159 103-184 (370)
442 PF04394 DUF536: Protein of un 20.9 1.7E+02 0.0036 21.3 3.6 13 146-158 30-42 (45)
443 PRK05729 valS valyl-tRNA synth 20.9 3.5E+02 0.0076 29.0 7.4 58 96-160 809-873 (874)
444 cd07596 BAR_SNX The Bin/Amphip 20.9 4.8E+02 0.01 21.5 15.2 24 67-90 104-127 (218)
445 PF07464 ApoLp-III: Apolipopho 20.8 2.8E+02 0.006 24.4 5.7 88 33-130 29-117 (155)
446 PF13514 AAA_27: AAA domain 20.7 1.1E+03 0.025 25.8 12.7 22 162-183 973-994 (1111)
447 PRK14161 heat shock protein Gr 20.6 3E+02 0.0064 24.6 5.9 44 104-161 11-54 (178)
448 COG1382 GimC Prefoldin, chaper 20.5 5.6E+02 0.012 22.1 8.2 36 80-116 13-48 (119)
449 PF06785 UPF0242: Uncharacteri 20.4 3.4E+02 0.0074 27.7 6.8 68 97-164 133-219 (401)
450 PRK03598 putative efflux pump 20.4 5.8E+02 0.013 23.3 7.9 15 145-159 157-171 (331)
451 KOG0612 Rho-associated, coiled 20.4 3.6E+02 0.0079 31.3 7.7 81 79-159 433-527 (1317)
452 KOG0976 Rho/Rac1-interacting s 20.3 1.3E+03 0.029 26.5 13.3 56 112-167 256-311 (1265)
453 PF05557 MAD: Mitotic checkpoi 20.3 34 0.00074 35.3 0.0 42 92-133 179-220 (722)
454 PF02185 HR1: Hr1 repeat; Int 20.1 3.7E+02 0.0079 19.8 6.6 33 128-167 35-67 (70)
No 1
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.15 E-value=0.13 Score=54.77 Aligned_cols=99 Identities=25% Similarity=0.313 Sum_probs=83.5
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
.-.+-|+|+.+|+|-+--|.|.+-..++..|.+ .|.+--+|-|.-|...=|.|--.----..+|.+|.||..+-+++.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~ 490 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLE 490 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 456779999999999999999998888888877 788888888888888877764222222578999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhc
Q 022776 143 KKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 143 Kkk~eEIs~L~~ELe~lrksr 163 (292)
+++.+-|.+|.-|++.|+.+-
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il 511 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSIL 511 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 2
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.78 E-value=3.2 Score=39.87 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=59.9
Q ss_pred HhhhchhhHHhHHHHHHHHhcC-----CCCC--CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 022776 36 MLEYTDDQLADFMAWFDLLRQK-----PKDG--EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE 108 (292)
Q Consensus 36 ~lElaEDDLeDFka~~~~Lt~e-----lken--SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iq 108 (292)
-.+..+.+++.++.-+.++... |... +. ..++..|-...+..=.|++.++..... +.....+.+++...+.
T Consensus 263 ~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~-~~~~~~~~~~~~~~i~ 340 (562)
T PHA02562 263 AAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDE-LEEIMDEFNEQSKKLL 340 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444566677777777777431 1111 12 566666666666776666666665552 2222223444444444
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.+.+.+......-...-.++.+|+.++.+++....+..+++..|..+|..+
T Consensus 341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 444444443333333334444444444444444444444444444444433
No 3
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.69 E-value=0.29 Score=37.67 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=54.0
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
++..+|+.|+..++ .|+..-+.|......-.+.|-+|++++.+.|......+..+..+..+++.|+..
T Consensus 2 sl~~~l~EKDe~Ia-------~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIA-------QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777766555 455566666666666688999999999999999999999999999999999864
No 4
>PRK11637 AmiB activator; Provisional
Probab=93.42 E-value=1.8 Score=41.34 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=47.9
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEK-----------LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT 147 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqK-----------Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~e 147 (292)
-++|...-.++..-++....+++++...++. +.+....|+..-.++...+..|+.+..+.+....+...
T Consensus 161 l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~ 240 (428)
T PRK11637 161 FGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555666666666655555544444332 22333335555566666788887766666666666666
Q ss_pred HHHHHHHHHHHHH
Q 022776 148 EISRLTQELELLR 160 (292)
Q Consensus 148 EIs~L~~ELe~lr 160 (292)
+.++|...|+.+.
T Consensus 241 ~~~~L~~~I~~l~ 253 (428)
T PRK11637 241 NESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666553
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=0.82 Score=50.84 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=108.2
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
+..+|+..++...+-+-.++++-|+++-.+++..+....+- ..|...++.++....++-++|..++.++..|....
T Consensus 483 ~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~----e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 483 KLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKV----EELKGKLLASSESLKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66788899999999999999999999998887766555544 45555566666677788888888888777444444
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCCccccccccccccccccCCCCcccc-----------cccccccccccccCCCCCcc
Q 022776 143 KKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQN-----------RSSTAGIKGRLRKSGSSSVT 211 (292)
Q Consensus 143 Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~~~~~~~s~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 211 (292)
+++-.++.+|..+.++|++--.+ +=+++.-.+.+.+-.+-+| -.-..||.|||-.-|+-..
T Consensus 559 ~~~~k~l~~~~~e~~~~~~~~~~-------~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~- 630 (1293)
T KOG0996|consen 559 KEKEKELPKLRKEERNLKSQLNK-------LRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDE- 630 (1293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccch-
Confidence 44433333333333322221111 1111111111111110000 0114688999988776432
Q ss_pred CCCCCccccccccCCCCCCcceeccccCCC---------------CCCccccccccccccccccccccccccCcccccc
Q 022776 212 PLSNYSTTTAQSLGGKNGDNVVVNKQMPAA---------------QVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSS 275 (292)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~n~~~~k~~~~~---------------~~p~~~~~~k~~r~~krk~~~~~~~~etpklfss 275 (292)
-|. +|-|.+|.-=++|||-..-+|. -+++ + ..+--.++.+++.+-..+|+||.=
T Consensus 631 ---kYD--vAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~L----D-ki~~~~~~l~~i~tpenvPRLfDL 699 (1293)
T KOG0996|consen 631 ---KYD--VAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIIL----D-KIKDHQKKLAPITTPENVPRLFDL 699 (1293)
T ss_pred ---HHH--HHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEeh----H-hhhhhhhccCCCCCCCCcchHhhh
Confidence 222 2333344444677776654442 1222 1 122235667787788899999973
No 6
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.37 Score=50.32 Aligned_cols=117 Identities=26% Similarity=0.302 Sum_probs=66.3
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhhcC----CCCccccc--ccc--ccccccccCCCCcccccccccccc-ccccc
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKSRT----ASDTPVLN--RCT--RIAGATTSNAGDSVQNRSSTAGIK-GRLRK 204 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~----a~~tpvl~--~ct--~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~ 204 (292)
++..++....+++.+|++|+.+|..+|+-|. .-.|||.. --| .|+.+- ...||+ |.+
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e------------~~~gik~GDv-- 547 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAE------------EEYGIKEGDV-- 547 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHH------------HhhccccCcE--
Confidence 3334444455899999999999999997664 34477432 111 111111 112221 110
Q ss_pred CCCCCccCCCCCccccccccCCCCCCcceeccccCCCCCCccccccccccccccccccccccccCcccccccc
Q 022776 205 SGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKF 277 (292)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~n~~~~k~~~~~~~p~~~~~~k~~r~~krk~~~~~~~~etpklfss~f 277 (292)
--|---|.-++.+|+-.++..+.+|.+..+++.++-.- -.+.+|+++|+.|.-.+---.|
T Consensus 548 ---i~v~~~sG~g~~~a~~li~~~~raii~~~~~s~~A~e~----------f~~~~iPv~~~~dV~i~~ld~~ 607 (652)
T COG2433 548 ---ILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAAEE----------FFKNEIPVLPEGDVQIIRLDEF 607 (652)
T ss_pred ---EEEEcCCCcchHhHHHHhccCcceEEccCccchHHHHH----------HhhcCCceeecCceEEEEecce
Confidence 00111123356688889999999999998886543222 2455788887766654433333
No 7
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.57 E-value=0.98 Score=34.99 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=58.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
.|..=+.-|.+|-+.|+-|+..+++|+..|..-.++...|+.+...+..+...|.+.|.-|-..|+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445566789999999999999999999999999999999999999999999999999998877764
No 8
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.20 E-value=0.69 Score=39.24 Aligned_cols=71 Identities=27% Similarity=0.410 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
+..-++|++.|++.+..+.+.+-+|...+..++.+|.-|+.++...|..+.+..+.+..+...|+..-+..
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~ 72 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK 72 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556788888888888888888888888888888888888888777777777777777776666654443
No 9
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=91.29 E-value=4.3 Score=32.18 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=53.1
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
...|.+++-.|..+..-+-+=+.-+.....+...-.+..+.-.....++..+|.+|.+++..| ..+|++|...
T Consensus 31 ~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l-------~~~~~k~e~~ 103 (126)
T PF13863_consen 31 KQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEEL-------KSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 345777777666666555444444444444455555566666667788899999999999844 5667777777
Q ss_pred HHHHHhhc
Q 022776 156 LELLRKSR 163 (292)
Q Consensus 156 Le~lrksr 163 (292)
|+.+....
T Consensus 104 l~~~~~Y~ 111 (126)
T PF13863_consen 104 LEEYKKYE 111 (126)
T ss_pred HHHHHHHH
Confidence 77666544
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.28 E-value=2.4 Score=43.44 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=18.0
Q ss_pred ccccccccCCCCCccCCCCCccccccccCCCCCCcceecc
Q 022776 197 GIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNK 236 (292)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~n~~~~k 236 (292)
|+.|+|..-.+. -..|.+.-.-..|++ -.+|||.-
T Consensus 522 g~~g~l~dli~v----~~~y~~Aie~~lg~~-l~~ivv~~ 556 (1164)
T TIGR02169 522 GVHGTVAQLGSV----GERYATAIEVAAGNR-LNNVVVED 556 (1164)
T ss_pred CceecHHHhcCc----CHHHHHHHHHHhhhh-hCCEEECC
Confidence 556666332222 256666554445544 45677644
No 11
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.30 E-value=3.8 Score=43.04 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=55.1
Q ss_pred chhhHHhHHHHHHHHhcC-------C-CCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 022776 40 TDDQLADFMAWFDLLRQK-------P-KDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLL 111 (292)
Q Consensus 40 aEDDLeDFka~~~~Lt~e-------l-kenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLl 111 (292)
.-+||+|-++.|-+|..+ + +.|+.++..=...++-..||-|| ||+...-+...=+-.-+--.+.+.+.-
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~---kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ---KDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777666665 2 22555555545556667888888 444444444433333333344444444
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 112 ASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 112 q~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
..+..|...+..|+.+|-.|+.++.
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566777777888877777664
No 12
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.27 E-value=4.1 Score=42.51 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=51.1
Q ss_pred hchhhHHhHHHHHHHHhcC----CCC--C-C---------------ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhh
Q 022776 39 YTDDQLADFMAWFDLLRQK----PKD--G-E---------------PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSK 96 (292)
Q Consensus 39 laEDDLeDFka~~~~Lt~e----lke--n-S---------------eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K 96 (292)
.++|+... +.||||+..- ++. + + --..++.+|-+..+=+-+|++-.|.+=. ++.+-
T Consensus 187 ~~ed~~m~-k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~-~~esl 264 (581)
T KOG0995|consen 187 EAEDKTMN-KLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPG-KEESL 264 (581)
T ss_pred chHHHHHH-HHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHH
Confidence 45777777 7777777654 111 1 1 1233444555555555555554443322 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+..-+.-+-++.|.+.++.++.+-.+..+..+.+|+.++.
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333444556666666666666666666666666665555
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.16 E-value=4.5 Score=38.94 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=15.9
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHh
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSK 92 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~ 92 (292)
+...++..|.++....=.|...++.++.++
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.11 E-value=3.4 Score=34.91 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCC----ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHH
Q 022776 29 EASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGE----PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRAN 104 (292)
Q Consensus 29 E~sl~kl~lElaEDDLeDFka~~~~Lt~elkenS----eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAn 104 (292)
+..-.+..+-..+.+|.+|..++..+..++..-. .-..+......+=+..|..|+.|++++.++. .++.+..
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~----~~~~~~~ 157 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ----KELQDSR 157 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3344444444455777777777777766643311 0112222333333444555555555555544 3333444
Q ss_pred HHHHHHHHHHHHH
Q 022776 105 ERIEKLLASTEQL 117 (292)
Q Consensus 105 E~iqKLlq~~E~L 117 (292)
+.++.+...++.+
T Consensus 158 ~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 158 EEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.92 E-value=2 Score=47.31 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=38.0
Q ss_pred hhhhhhhhHHhhhhhHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTS---KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKL 131 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~---~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RL 131 (292)
...++|-+..+.+.+|-. .++.++..++...+++.+.+..++.+-..-.++...|.++
T Consensus 268 k~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~ 328 (1074)
T KOG0250|consen 268 KAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL 328 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 457999999999988764 4566667777777777777777666653333333333333
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.89 E-value=6.7 Score=39.99 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022776 149 ISRLTQELELL 159 (292)
Q Consensus 149 Is~L~~ELe~l 159 (292)
+..+.+++..+
T Consensus 381 ~~~l~~~~~~~ 391 (1179)
T TIGR02168 381 LETLRSKVAQL 391 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.63 E-value=0.95 Score=38.18 Aligned_cols=69 Identities=19% Similarity=0.326 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH--HhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI--AQMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKl--aeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
...-...|..|+..+.+|+.....-..++..|...+ .+|.........+|..|+..|+.||+. +..+||
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~-~~~vs~ 144 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG-SKPVSP 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCH
Confidence 333344455555555555544444444555554433 255555667778888888888888873 334555
No 18
>PRK11637 AmiB activator; Provisional
Probab=89.01 E-value=2.6 Score=40.39 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
++...+..|..+...++.++..-..-+.+|..++.++++.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443344444444444444433
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.18 E-value=2.2 Score=38.11 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
+..+.+..++.|..++++|+.....-..+|.+|+.++.+++.-..+..--+.+.-++|
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333333333333333
No 20
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.89 E-value=6.1 Score=36.02 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=55.5
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHH------------------------HHHHHHHHHHHHHHHHH-HH
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA------------------------EVDRANERIEKLLASTE-QL 117 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~------------------------EvaQAnE~iqKLlq~~E-~L 117 (292)
....+|..++.|+|-+---+.-||..|+++++.-+- .+.+-....+.|....+ +|
T Consensus 66 ~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL 145 (207)
T PF05010_consen 66 LSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKL 145 (207)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999998875320 11122222223333222 25
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 118 QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 118 Qs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
+.+|.+-+.-....+++++-+.+..++..-.+.-|...|+
T Consensus 146 ~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 146 EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556555555555555555555555555555555554444
No 21
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.64 E-value=2.6 Score=39.95 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 94 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 94 K~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
..=+.++..++..|+.|+..++.+|...++.+.+|.++++++.+.+...+..++.|-....-
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788899999999999999999999999999999987766666666666544433
No 22
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.58 E-value=7.3 Score=34.85 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
+...|+.++..++.-....+..|+.|+..|+..-++...
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555566666666667777777777777777665543
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.48 E-value=11 Score=38.82 Aligned_cols=7 Identities=14% Similarity=0.610 Sum_probs=4.7
Q ss_pred ccccccc
Q 022776 260 AVDVIPI 266 (292)
Q Consensus 260 ~~~~~~~ 266 (292)
++.++|.
T Consensus 574 r~tflpl 580 (1164)
T TIGR02169 574 RATFLPL 580 (1164)
T ss_pred CeeeccH
Confidence 5677775
No 24
>PRK09039 hypothetical protein; Validated
Probab=87.26 E-value=9.5 Score=36.44 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=63.4
Q ss_pred hhhhhhhhhhhhhHHhhh----------hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 69 SAFLDERAFLWNQYKVME----------NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 69 sALLaEKdFVWNQ~k~ME----------~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
.++.+++.-+=+||.... ..+...|...+.+...++-.++.|.+.++.|... |..|++.+...
T Consensus 91 ~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~a 163 (343)
T PRK09039 91 SAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 355556666655555331 1234567777778888888888888888888854 88888888888
Q ss_pred hhcccchhhHHHHHHHHHHHHHhh
Q 022776 139 ETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 139 e~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|...++.+..|..|..+|+.+...
T Consensus 164 e~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 164 EKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999988888887533
No 25
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=87.15 E-value=3.2 Score=30.16 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 107 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 107 iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
..+..+|-......-+.|-..|..|+.++..++..-.....++..|..+++.|+.
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667777888889999999999999988888889999999999888864
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.28 E-value=6.8 Score=32.42 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----hhhhcccchhhHHHHHHHHH
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA----QMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla----eMe~~~Kkk~eEIs~L~~EL 156 (292)
+...+-+++.+.++...|...+..++.....--+++.|++..+. ....+.++++-||.+|..-|
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555556666666666655555544556666654332 55566666666776666554
No 27
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=85.63 E-value=6.9 Score=40.18 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=52.9
Q ss_pred ccchhhhhhhhhhhhhhhhH--HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH---Hhhhh----hhhhhHHHHHHH
Q 022776 63 PKSIEVSAFLDERAFLWNQY--KVMENDLTSKINSKRAEVDRANERIEKLLASTEQ---LQLSN----NEKDETIAKLKT 133 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~--k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~---LQs~n----qeKDdeI~RLqa 133 (292)
+--.||.++.+|=.++-.|| ||+|+..- +.++.+.-+-|.+|..+ |-.-| +-=..+|.||..
T Consensus 418 QyleelqsvqRELeVLSEQYSQKCLEnahL---------aqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 418 QYLEELQSVQRELEVLSEQYSQKCLENAHL---------AQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33468888899999998888 68887543 11222333455555444 32333 334568888877
Q ss_pred HHH-----------------hhhhcccch-------hhHHHHHHHHHHHH
Q 022776 134 QIA-----------------QMETGSKKW-------NTEISRLTQELELL 159 (292)
Q Consensus 134 Kla-----------------eMe~~~Kkk-------~eEIs~L~~ELe~l 159 (292)
=++ |+|++..-+ +.||+-|++|||-+
T Consensus 489 lltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 489 LLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 544 566665544 45566666666654
No 28
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.46 E-value=5.9 Score=32.77 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=57.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 87 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 87 ~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.++...+..+..+.++.+..++.|...++.++....--......|+.++...+...+.-++++.+|..-++..+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888888888777777777777888877777777777777777776666554
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.22 E-value=13 Score=41.60 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=52.5
Q ss_pred cchhhhHHHHHHHHhhhch-----hhHHhHHHHHHHHhcCCCCC--CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhh
Q 022776 23 VGLKLREASLLKLMLEYTD-----DQLADFMAWFDLLRQKPKDG--EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINS 95 (292)
Q Consensus 23 LGlKerE~sl~kl~lElaE-----DDLeDFka~~~~Lt~elken--SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~ 95 (292)
|-++.|++.+++.-++.++ +|+.-...-+.-+.+++++. .-|++ -.-++++|++..+--.+
T Consensus 717 l~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~------------~~~i~~lE~~~~d~~~~ 784 (1174)
T KOG0933|consen 717 LELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKC------------EDKISTLEKKMKDAKAN 784 (1174)
T ss_pred HHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHhhhh
Confidence 4567788888888887765 23333333333333333321 11111 22345666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
++.++.-++-.|+.+.+.+++--..-.++.++..+|+.+..+|
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l 827 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL 827 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555555544444444444444444444433
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.06 E-value=13 Score=31.40 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 97 RAEVDRANERIEKLLASTEQLQLSNNEKD---ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~nqeKD---deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
..+-++|++.|-+|...+++++....+-+ .++..|+.+..-+--..-+|.|++.+|+.+++-|+.-
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666654433222 2333444444444556678899999999999888753
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.80 E-value=12 Score=37.48 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCC-CccchhhhhhhhhhhhhhhhHHh-----------hhhhHHHhhhh
Q 022776 28 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG-EPKSIEVSAFLDERAFLWNQYKV-----------MENDLTSKINS 95 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~~~Lt~elken-SeK~kEVsALLaEKdFVWNQ~k~-----------ME~Dyt~~LK~ 95 (292)
.+...|+.-++.++..|.+...=+ -.+..|... ..-..+|..|.+| |.++.. ...++...|..
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~E----l~~~~~~~l~~~~~~~~~~~~~~~~l~s 285 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAE----LEAAKESKLEEEAEAKEKSSELQSSLAS 285 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHhhhhhhhHHHHHHH
Confidence 344556666666766666655544 111111111 1223444444433 233322 22334445666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
-..|..++...+++.......|+....-=-.+|.+.+..+..+.-......-.|+.|..+|..+|.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 666666666666655555555554444444455555555554444444445555555555554443
No 32
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=84.68 E-value=3.3 Score=40.16 Aligned_cols=69 Identities=29% Similarity=0.431 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh--------------cccchhhHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET--------------GSKKWNTEISRLTQELE 157 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~--------------~~Kkk~eEIs~L~~ELe 157 (292)
=|..|++-|---. .||..+.+.| +++|-||..|+.+|+.|.. -.|++..||..|++=+|
T Consensus 62 PLQQKEV~iRHLk---akLkes~~~l----~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 62 PLQQKEVCIRHLK---AKLKESENRL----HDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433221 2444455555 4799999999999987643 47999999999999999
Q ss_pred HHHhhcCCCC
Q 022776 158 LLRKSRTASD 167 (292)
Q Consensus 158 ~lrksr~a~~ 167 (292)
-||++=.--+
T Consensus 135 TmrssL~ekD 144 (305)
T PF15290_consen 135 TMRSSLAEKD 144 (305)
T ss_pred HHHhhhchhh
Confidence 9999876443
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.35 E-value=8.5 Score=36.38 Aligned_cols=128 Identities=18% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHHhhhchhhHHhHHHHHHHHhcCCCC---CCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHH
Q 022776 34 KLMLEYTDDQLADFMAWFDLLRQKPKD---GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKL 110 (292)
Q Consensus 34 kl~lElaEDDLeDFka~~~~Lt~elke---nSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKL 110 (292)
+.-++.++.|...|..|...|...-.. -.+-..|++.|-.|..-.-.+++-+|+ |-++....+..|
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~-----------e~~~l~~el~~l 83 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEK-----------EREELDQELEEL 83 (314)
T ss_dssp ---------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344566666666777776666521100 012334444444444444444444444 334444444445
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccccc
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIA 178 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~~~ 178 (292)
....++|+....+.=.+...++-++.+++......+..+.-..+.|+.||+ |-|+|.+-.|.
T Consensus 84 e~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k------tNv~n~~F~I~ 145 (314)
T PF04111_consen 84 EEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK------TNVYNDTFHIW 145 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--------TTTTT--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCchhceeeEe
Confidence 555555544333444444445555555555555777888888888888886 45666666554
No 34
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.21 E-value=4.9 Score=36.92 Aligned_cols=88 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHhcCCCCC----CccchhhhhhhhhhhhhhhhHHhhhhhH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022776 51 FDLLRQKPKDG----EPKSIEVSAFLDERAFLWNQYKVMENDL---TSKINSKRAEVDRANERIEKLLASTEQLQLSNNE 123 (292)
Q Consensus 51 ~~~Lt~elken----SeK~kEVsALLaEKdFVWNQ~k~ME~Dy---t~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqe 123 (292)
|++|-+.|++- +.|..||-+|-+--.=.=.+++..|... .+.+..|..|.......++......+.|......
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 55566666652 5677777776553333333344333322 3345555555555555555555555555544444
Q ss_pred hhhHHHHHHHHHHhh
Q 022776 124 KDETIAKLKTQIAQM 138 (292)
Q Consensus 124 KDdeI~RLqaKlaeM 138 (292)
-+.+|..|+..++.+
T Consensus 92 le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 92 LEAELAELREELACA 106 (202)
T ss_pred hHHHHHHHHHHHHhh
Confidence 455666666655554
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.06 E-value=13 Score=31.34 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHh
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~L---K~K~~EvaQAnE~iqKLlq~~E~LQ 118 (292)
.|+.++.....-+=.++.-++.++.... +..+.++....+.+..+.+....|+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555554333 5666677777777777777777777
No 36
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.82 E-value=9.8 Score=30.07 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=54.6
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh------------hhhhhhhhHHHHHHHHHHhhhhcccchh
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ------------LSNNEKDETIAKLKTQIAQMETGSKKWN 146 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQ------------s~nqeKDdeI~RLqaKlaeMe~~~Kkk~ 146 (292)
-+||+.|..++. .|-.....+...-.........++.|. -.-..+++-+..|...+..++...++.+
T Consensus 5 ~~~~q~l~~~~~-~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 5 LAQLQQLQQQLQ-AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888776 333444444444444444455555442 1235678888889998888888888888
Q ss_pred hHHHHHHHHHHHHHh
Q 022776 147 TEISRLTQELELLRK 161 (292)
Q Consensus 147 eEIs~L~~ELe~lrk 161 (292)
..+..|..++..++.
T Consensus 84 ~~~~~l~~~~~elk~ 98 (105)
T cd00632 84 RQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877764
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.66 E-value=18 Score=32.64 Aligned_cols=94 Identities=24% Similarity=0.408 Sum_probs=53.8
Q ss_pred chhhhhhhhhhhhhhhhH--------HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---
Q 022776 65 SIEVSAFLDERAFLWNQY--------KVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT--- 133 (292)
Q Consensus 65 ~kEVsALLaEKdFVWNQ~--------k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa--- 133 (292)
..++++.|++ +|.|| ..+|.-|...+......+.++++.+..+...+-.+...-+.-..+|..|+.
T Consensus 164 ~~dL~~~L~e---iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 164 SSDLSAALRE---IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp ---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhh---HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 4556666654 44444 267888888888877777666666666655555554444444444444433
Q ss_pred ----HHHhh----hhcccchhhHHHHHHHHHHHHHh
Q 022776 134 ----QIAQM----ETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 134 ----KlaeM----e~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+.++ ......+...|..|+.+|..||.
T Consensus 241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 33322 33444566677777777777664
No 38
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.42 E-value=14 Score=32.66 Aligned_cols=104 Identities=22% Similarity=0.297 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCCCCccchhhhhhhhhhhh----hhhhHHhhhhhHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHh
Q 022776 47 FMAWFDLLRQKPKDGEPKSIEVSAFLDERAF----LWNQYKVMENDLTSKINSKRAE----VDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 47 Fka~~~~Lt~elkenSeK~kEVsALLaEKdF----VWNQ~k~ME~Dyt~~LK~K~~E----vaQAnE~iqKLlq~~E~LQ 118 (292)
|-.||+=|-- .|+-=-+||+. |||.|..+=.-|..+.++-... +.++......+...+..|.
T Consensus 64 y~~~F~ELIR----------QVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~ 133 (189)
T PF10211_consen 64 YSQCFDELIR----------QVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELE 133 (189)
T ss_pred HHHHHHHHHH----------HHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778876653 34444445554 6999998777787777654332 2222222345555555555
Q ss_pred hhhhhhhhHHHHHHHHHHh--------hhhcccchhhHHHHHHHHHHHHH
Q 022776 119 LSNNEKDETIAKLKTQIAQ--------METGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 119 s~nqeKDdeI~RLqaKlae--------Me~~~Kkk~eEIs~L~~ELe~lr 160 (292)
....+-..++..|+.+... +....|+..+||..|+..-+.|+
T Consensus 134 ~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 134 EEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443 23334445555555555444443
No 39
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=83.29 E-value=17 Score=31.08 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=49.4
Q ss_pred hhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------------HHHhhhhccc
Q 022776 77 FLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT-------------QIAQMETGSK 143 (292)
Q Consensus 77 FVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa-------------KlaeMe~~~K 143 (292)
=|-++|+.+|..|-.+.+.-++.-.+=...++.+.+.+.++...-++.++.|.+|.+ -+.+-....+
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 356789999999986665544333333334456666666666666666777777754 3344555556
Q ss_pred chhhHHHHHHHHHH
Q 022776 144 KWNTEISRLTQELE 157 (292)
Q Consensus 144 kk~eEIs~L~~ELe 157 (292)
+.+.+|.+.++.+.
T Consensus 104 ~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 104 KLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.81 E-value=8.2 Score=41.28 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH-------------
Q 022776 62 EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETI------------- 128 (292)
Q Consensus 62 SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI------------- 128 (292)
++|+.|+.+|..+-.=.=||+.-| ...-+.|+ ..+..+...+..|+..++.|..--.+|...|
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lk---esl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDM-RQHIEVLK---ESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999988888888887 55555664 3555556666666666666654444443333
Q ss_pred -HHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 129 -AKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 129 -~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+++.++.+|.-....++-+|+.|...+++|.
T Consensus 373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555666667777777755443
No 41
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=82.77 E-value=14 Score=31.96 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=69.1
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
.|+|-++..+-. .+......+..+...+..+-..+.-|+..++..+..-.+|...++...+....-...|.+|.+|
T Consensus 15 ~~~~~~~~~l~~----~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 15 GWQSQRLRNARA----DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666655444 4445566667777777778888888888888889999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 022776 156 LELLRKSRTASD 167 (292)
Q Consensus 156 Le~lrksr~a~~ 167 (292)
.|.+|.-=.+.+
T Consensus 91 Ne~lR~Wa~t~L 102 (135)
T TIGR03495 91 NEDLRRWADTPL 102 (135)
T ss_pred CHHHHHHhcCCC
Confidence 999998655433
No 42
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=82.40 E-value=16 Score=37.29 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=72.6
Q ss_pred HHHhhhchhhHHhHHHHHHHHhcCCCCCC--ccchhhhhhhhhhhhhhhhHHhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 022776 34 KLMLEYTDDQLADFMAWFDLLRQKPKDGE--PKSIEVSAFLDERAFLWNQYKVME---NDLTSKINSKRAEVDRANERIE 108 (292)
Q Consensus 34 kl~lElaEDDLeDFka~~~~Lt~elkenS--eK~kEVsALLaEKdFVWNQ~k~ME---~Dyt~~LK~K~~EvaQAnE~iq 108 (292)
..-.|.++||-+-+++|+..|..+-+..+ .+.+|...|-.|.-=...|++-+| .|....|..++.+..++.|+-.
T Consensus 149 d~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~ 228 (447)
T KOG2751|consen 149 DKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEED 228 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999876652 222233332223222334444333 3455556666666666666555
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccccc
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIA 178 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~~~ 178 (292)
...+.-...+...-+=+++|.-|++++.. -+..+++.| .|-|++-|-.|.
T Consensus 229 ~~~~ey~~~~~q~~~~~del~Sle~q~~~-----------------s~~qldkL~---ktNv~n~~F~I~ 278 (447)
T KOG2751|consen 229 QYWREYNNFQRQLIEHQDELDSLEAQIEY-----------------SQAQLDKLR---KTNVFNATFHIW 278 (447)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHH-----------------HHHHHHHHH---hhhhhhheeeEe
Confidence 55555555555555555666666555431 123444554 377888887753
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=82.24 E-value=28 Score=35.70 Aligned_cols=12 Identities=8% Similarity=0.432 Sum_probs=4.6
Q ss_pred hhHHHHHHHHHH
Q 022776 146 NTEISRLTQELE 157 (292)
Q Consensus 146 ~eEIs~L~~ELe 157 (292)
..++..+..+++
T Consensus 385 ~~~~~~~~~~~~ 396 (1179)
T TIGR02168 385 RSKVAQLELQIA 396 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 44
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.93 E-value=13 Score=31.53 Aligned_cols=32 Identities=13% Similarity=0.428 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 130 KLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 130 RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+.-++..++.....|...+..|...+..+++
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~~k~ 143 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKEAKK 143 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Confidence 34446667777777888888888887766543
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.88 E-value=10 Score=43.25 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=69.0
Q ss_pred hhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhH
Q 022776 69 SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTE 148 (292)
Q Consensus 69 sALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eE 148 (292)
+|+-||+.|- ++..-=+--..+|.++-.....|.+.|++|+...+.|-..+++|-+.|..|+.+.-.-+--...+-.+
T Consensus 1655 ~A~~a~q~~~--~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1655 QALSAEQGLE--ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555666553 33332233345777777888899999999999999999999999999999987666555555566778
Q ss_pred HHHHHHHHHHHHhhc
Q 022776 149 ISRLTQELELLRKSR 163 (292)
Q Consensus 149 Is~L~~ELe~lrksr 163 (292)
|-.|+.+|+.++.--
T Consensus 1733 L~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1733 LAGLEKRVESVLDHI 1747 (1758)
T ss_pred hhhHHHHHHHHHHHH
Confidence 888999998877643
No 46
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.64 E-value=11 Score=32.81 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=37.8
Q ss_pred chhhhhhhhhhhhhhhhHHhhhh-h---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 65 SIEVSAFLDERAFLWNQYKVMEN-D---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 65 ~kEVsALLaEKdFVWNQ~k~ME~-D---yt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
..++..+.++++-+=.+....=. + -.........++.+..+.+..|...+++++.....+-..|..++..+..
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433222 0 1112334445566666666666666666666666666666666555543
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=80.90 E-value=7.4 Score=28.26 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
....+|-+..+..-+.|-..|..|+.++..++.....+..+++.|..++..|+.
T Consensus 8 rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 8 RRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777778888888888888888888888888888888888887764
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.49 E-value=9.2 Score=39.64 Aligned_cols=109 Identities=26% Similarity=0.336 Sum_probs=72.2
Q ss_pred hhHHhHHHHHHHHhcCCCC----------C-----------------------CccchhhhhhhhhhhhhhhhHHhhhhh
Q 022776 42 DQLADFMAWFDLLRQKPKD----------G-----------------------EPKSIEVSAFLDERAFLWNQYKVMEND 88 (292)
Q Consensus 42 DDLeDFka~~~~Lt~elke----------n-----------------------SeK~kEVsALLaEKdFVWNQ~k~ME~D 88 (292)
|-|++|.--+-||.++... . .+-.++...|..+=+=+|-+++.+.+-
T Consensus 49 DRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7899999999999988222 0 144456666666666778888765554
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 89 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 89 yt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
|. ++..++..|.+++.-.+.-+..++ -+|.-++.....|+.+.+..+.|+++|..+|+.+|+
T Consensus 129 ~~----~~~k~~~~~re~~~~~~~~l~~le-------Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 129 LE----KAEKERRGAREKLDDYLSRLSELE-------AEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HH----HHHHHHhhhHHHHHHHhhhhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44 444456666665555444444443 456666677777777777788888888888887776
No 49
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.83 E-value=18 Score=32.41 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLS-------NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~-------nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
++++-.+.-+.|.+|.+.+.+||.. .+.+|.+|.||+..+. ..+++|...+.+-+.
T Consensus 122 ~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~-------~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 122 KEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE-------ALKEEIENAELEFQS 184 (190)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444455567777777777777764 6677777888777776 456666666555544
No 50
>PRK02224 chromosome segregation protein; Provisional
Probab=79.65 E-value=37 Score=35.06 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 022776 148 EISRLTQELELLR 160 (292)
Q Consensus 148 EIs~L~~ELe~lr 160 (292)
.+..|..+++.++
T Consensus 413 ~l~~l~~~~~~l~ 425 (880)
T PRK02224 413 FLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 51
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=78.43 E-value=9.2 Score=33.78 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 166 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~ 166 (292)
-..|...+.||+++-...-+-+-+||.+-.+|..||.+-+.-+......|.+|-..+..-+..+.++
T Consensus 79 ~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~~~~~~~~ 145 (152)
T PF11500_consen 79 HEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMASKRNSADSE 145 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4567888999999999999999999999999999998888777777888888887777766666544
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.42 E-value=32 Score=37.48 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=23.1
Q ss_pred ccccccccccCCCCCccCCCCCccccccccCCCCCCcceeccccCC
Q 022776 195 TAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPA 240 (292)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~n~~~~k~~~~ 240 (292)
-.|+.|++..-++ +=..|.+.-.- -.|.+-.||||..+-.|
T Consensus 514 ~~Gv~G~v~~li~----v~~~y~~Aie~-alG~~l~~vVV~~~~~a 554 (1163)
T COG1196 514 LPGVYGPVAELIK----VKEKYETALEA-ALGNRLQAVVVENEEVA 554 (1163)
T ss_pred CCCccchHHHhcC----cChHHHHHHHH-HcccccCCeeeCChHHH
Confidence 5677776654432 22256554444 34455578888765544
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.27 E-value=14 Score=33.41 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 116 QLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 116 ~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+||...+.-+..|..|+.+..++.........++..|+.+++.++.
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666655555666666666666665553
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.95 E-value=18 Score=34.48 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHhhhhhHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHhhhhcccchhhHHHHHH
Q 022776 82 YKVMENDLTSKINSKRAE----VDRANERIEKLLASTEQLQLSNNEK----DETIAKLKTQIAQMETGSKKWNTEISRLT 153 (292)
Q Consensus 82 ~k~ME~Dyt~~LK~K~~E----vaQAnE~iqKLlq~~E~LQs~nqeK----DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~ 153 (292)
+..|.+|+.-+ ...... +.+--+.-+.|...+++|+....+- -+++.+++.++++.......+..+++.+.
T Consensus 153 ~~~l~~D~~~L-~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 153 LEGLKEDYKLL-MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777643 322221 2233344455666666666555552 33566666655544444444444444444
Q ss_pred HHHHHH
Q 022776 154 QELELL 159 (292)
Q Consensus 154 ~ELe~l 159 (292)
++|+.+
T Consensus 232 ~~l~~l 237 (312)
T smart00787 232 EELQEL 237 (312)
T ss_pred HHHHHH
Confidence 444433
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.79 E-value=25 Score=40.18 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcC
Q 022776 6 VAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 6 ~~~E~~~~lEaAk~dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~e 57 (292)
.++|-+..+|.| .|.+ .+..-...+++.++..|.....-+..|..+
T Consensus 277 ~~eERR~liEEA-----ag~r-~rk~eA~kkLe~tE~nL~rI~diL~ELe~r 322 (1486)
T PRK04863 277 HANERRVHLEEA-----LELR-RELYTSRRQLAAEQYRLVEMARELAELNEA 322 (1486)
T ss_pred CHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888 5666 334444455666777777766666666555
No 56
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.63 E-value=25 Score=37.77 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=35.4
Q ss_pred HHHHhhhhhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCC
Q 022776 13 LLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPK 59 (292)
Q Consensus 13 ~lEaAk~dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elk 59 (292)
.++.++++ ||.+.-|+.-++..++.......|++.-|+.|--.|.
T Consensus 288 k~d~~~~e--L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 288 KMDRLKLE--LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35555444 6888888999999999999999999999998865543
No 57
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=77.59 E-value=7.4 Score=31.65 Aligned_cols=54 Identities=30% Similarity=0.371 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
|+=.|+=|+-+.+.|......-.+++..++.+..++....++++++|..|..|+
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334667777777777777777777777777777777777778888888877764
No 58
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.28 E-value=36 Score=31.10 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 144 KWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
....++..+..+++.++.... .|.|.-||+.
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~--~~~i~AP~dG 280 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQ--RLIIRSPVDG 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcEEECCCCc
Confidence 445566666666666554333 3455555544
No 59
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=76.50 E-value=87 Score=31.36 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhhhhhhc-----chhhhHHHHHHHHhhhchhhHHhHHHHHHHH-------hcCCCCCC--------cc
Q 022776 5 IVAQELIHLLDAAKSDMVV-----GLKLREASLLKLMLEYTDDQLADFMAWFDLL-------RQKPKDGE--------PK 64 (292)
Q Consensus 5 ~~~~E~~~~lEaAk~dl~L-----GlKerE~sl~kl~lElaEDDLeDFka~~~~L-------t~elkenS--------eK 64 (292)
+...++..+.. |...+.= |.-+..+.+++..+++.+-+|.+||.+..-. -..||.++ -.
T Consensus 194 ~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~ 272 (511)
T PF09787_consen 194 IERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTN 272 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccc
Confidence 34445555554 3333332 3334467788889999999999999552221 11155521 11
Q ss_pred chhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHH
Q 022776 65 SIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSN---NEKDETIAKLKTQIA 136 (292)
Q Consensus 65 ~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~n---qeKDdeI~RLqaKla 136 (292)
..|+-.|-.|++++=.++.-|+.....+--.-.....++......+.+...+++... ..+++++.++..++.
T Consensus 273 ~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~ 347 (511)
T PF09787_consen 273 SIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELY 347 (511)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 245778888999998888877777633322222223333333444444444433222 222555666555553
No 60
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.48 E-value=15 Score=36.60 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+|+..++ +|++ +.....+..++-.+.+.+.+.+++++....+...++..|+.++.|++..-=+ ..|-..|+.++..|
T Consensus 145 ~~~~lLD-~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~-~~E~e~L~~e~~~L 221 (563)
T TIGR00634 145 EQRQLLD-TFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ-PGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC-CCcHHHHHHHHHHH
Confidence 4555664 4555 5566777888888888888888888888888888888888888888776543 44555555555555
Q ss_pred Hhh
Q 022776 160 RKS 162 (292)
Q Consensus 160 rks 162 (292)
...
T Consensus 222 ~n~ 224 (563)
T TIGR00634 222 SNL 224 (563)
T ss_pred hCH
Confidence 443
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.35 E-value=12 Score=33.80 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
..+.+....+++|.+.++.++ ++-+..-..++.+++.-.....+.+++.++|..+|+.++...
T Consensus 93 ~rlp~le~el~~l~~~l~~~~---~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID---NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333 222344444555555444445556666666666666666544
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.29 E-value=47 Score=29.04 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred hhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-------HHHHHHHhhhhcccchhhHHH
Q 022776 78 LWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIA-------KLKTQIAQMETGSKKWNTEIS 150 (292)
Q Consensus 78 VWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~-------RLqaKlaeMe~~~Kkk~eEIs 150 (292)
-+.+.+..=......+..-+.++++..+.++.....+++++...+.+...+. .....+.+........+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLS 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333344444455666666666666666666666555555554 333334444444455555555
Q ss_pred HHHHHHHHHHhhcC
Q 022776 151 RLTQELELLRKSRT 164 (292)
Q Consensus 151 ~L~~ELe~lrksr~ 164 (292)
.+...+..-|..--
T Consensus 137 ~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 137 QLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666655555433
No 63
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.28 E-value=6.5 Score=36.04 Aligned_cols=53 Identities=32% Similarity=0.478 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 107 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 107 iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.|+.+++.||..|+.=.++-..|+..+.-|+...-+.-++|..|...+..+
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999988888888888888777766554
No 64
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.08 E-value=40 Score=34.30 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
|..+++++.......+..+++|..++.+++.
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333334444444444444433
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=75.53 E-value=31 Score=35.56 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
.+....+.|.....+..+++..+...+.+.+...+...++|..|+.+|+.++....
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444555555555666666666667777777777777766554
No 66
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.27 E-value=12 Score=34.47 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH--hhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA--QMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla--eMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
.|..+--++|++|...+..||...-.=+.||..|..-|+ ||+-...+.++|.-.-+..|.++|.-++ -|||
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~-~vtp 151 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN-HVTP 151 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCH
Confidence 567777888888888888888776666777777776554 4444444444444444555666666554 4777
No 67
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.80 E-value=34 Score=37.33 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+...+|..++..+..++.....|.....+|.++++.+...
T Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~ 836 (1163)
T COG1196 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666666666666666666665543
No 68
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=74.40 E-value=45 Score=29.00 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=41.2
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKla 136 (292)
+.|+|.-+.-+=.+=...+...-.++.++.+.++++++..+. |+....+-...|...+.+..
T Consensus 49 ~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 49 TRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888665443444447777777888888888777776655 66666666666666655443
No 69
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.07 E-value=41 Score=35.01 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.|-++|..++.++.+++.+.+.|++.+++|..+++.|-+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556677778888899999999999999999999998664
No 70
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=73.66 E-value=23 Score=29.82 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=28.7
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 116 QLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 116 ~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
.|.+....+..+-..|++.++ +++.|.++|..|+++|.+--
T Consensus 70 ~l~s~~k~R~~~~q~lq~~I~-------Ek~~eLERl~~E~~sL~kve 110 (120)
T PF14931_consen 70 LLKSEAKQREAQQQQLQALIA-------EKKMELERLRSEYESLQKVE 110 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555 99999999999999998753
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.63 E-value=78 Score=29.79 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=42.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccch-----------hhHHHHHHHHHHHH
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKW-----------NTEISRLTQELELL 159 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk-----------~eEIs~L~~ELe~l 159 (292)
..|..-+.+.+...+.|+...+.+++|+..-+..+.+|..+.++..++.....++ ..||.+|.++++.|
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3455555566666666665555556666555555555555555555443333322 24577777777777
Q ss_pred HhhcC
Q 022776 160 RKSRT 164 (292)
Q Consensus 160 rksr~ 164 (292)
-+.-+
T Consensus 289 e~~~g 293 (325)
T PF08317_consen 289 EKLTG 293 (325)
T ss_pred HHHHC
Confidence 66555
No 72
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.59 E-value=33 Score=32.74 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=6.3
Q ss_pred hhhhHHhhhh
Q 022776 78 LWNQYKVMEN 87 (292)
Q Consensus 78 VWNQ~k~ME~ 87 (292)
+|||+.+|..
T Consensus 24 i~n~~s~~D~ 33 (246)
T KOG4657|consen 24 IHNQRSKIDS 33 (246)
T ss_pred HHHHHHHHHH
Confidence 5777766654
No 73
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=73.30 E-value=32 Score=27.43 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
...+++....-+..=+.|..+..++.+||..+...|+-+.+|+..+..
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333334444556688888999999999999999999999877643
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.15 E-value=20 Score=33.59 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+.+.+..+......+-.++..|+.++........+..++++++..+++.+.+.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555555555555555555555555555555543
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.98 E-value=9.7 Score=32.06 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 89 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 89 yt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+.+.|+.++.|+.+..+.++.|.+.-+.| .+||++|-.+..++. ....++..|+++++.|..
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l-------~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDEL-------REEIVKLMEENEELR----ALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 55678888888877777777666665555 467888776665443 334455566666666544
No 76
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=72.46 E-value=7.1 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
.+.-....++.||+..+.||.+|.+|+.++.+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666666666666653
No 77
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=72.20 E-value=51 Score=29.80 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
.++.+|.+++..-+..+.+|+.+....-..|+.+|..+-...+-+++.|-.
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~ 221 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYES 221 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999998888999999999999999999999988777778777754
No 78
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=71.92 E-value=59 Score=27.93 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=43.7
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKla 136 (292)
+-|+|.-+.-+=..-...+.+.-.+++++.+.++.+++..++ |.....+-++.|...+.+..
T Consensus 40 ~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 40 WYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999887666666678888888888888888887776665 55555555555555555443
No 79
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.72 E-value=56 Score=38.71 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 94 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 94 K~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla-------eMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++.+.+..-++|.+..+....++|+...-+|..++..++.++. .+....++.-..|..|..+|+.-|-+|.
T Consensus 1044 rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666777777777777777777777766444 4444445555555666666666665553
No 80
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.48 E-value=42 Score=31.00 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL 117 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~L 117 (292)
+=.+|...|+.||.+.=.+++-+.+|+-. .+..+.||.+.-.+.+..+..+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~----lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINT----LENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999988888888888753 4556666655444444443333
No 81
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.47 E-value=40 Score=30.23 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcccc
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVL 171 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl 171 (292)
++++.+.++....+.|+..-..=..+|..|+.....++........+|..|+.+++.+...|. .++|+|
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~-~l~p~m 107 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ-ELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333344444444433433333334444445555555556666666666666666666655554 344433
No 82
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=71.44 E-value=7.3 Score=33.48 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
..|.+.+.++|+....++-.+.+|++++. .+|.||..|..+|+.+....
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~-------~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELR-------AKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888888888888886 99999999999999886654
No 83
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=71.25 E-value=54 Score=29.38 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=37.7
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLK 132 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLq 132 (292)
-+.|+|.-+.-|=.+=.+.+..--.++.++.+.+++++...++ |.....+-.+.|..-+
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888776554555557777777888888888887777666 4444444444444333
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.03 E-value=17 Score=37.17 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=40.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 85 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 85 ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
...+|.++... ..+++.++++..|.+.++.|+.+.+ .+..+..+++...++.++||..|+..++-++..
T Consensus 58 V~~~FddkVnq--SALteqQ~kasELEKqLaaLrqElq-------~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 58 VDTTFDDKVRQ--HATTEMQVTAAQMQKQYEEIRRELD-------VLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred ecchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34455555444 4556666677777777777753322 122333334444447788888888888666655
No 85
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=70.81 E-value=41 Score=29.99 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=41.1
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKla 136 (292)
+-|+|.-+.-+=.+-...+...-.++..+.+.++.+++..+. |+....+-.+.|...+.+..
T Consensus 66 ~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 66 IFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788777666666667777777888888887777666655 55555555555555555443
No 86
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.79 E-value=11 Score=34.88 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|+..++.+..+.|+...++++.+..+++.+...|.--+++.+.|.-+|..|-++|+..
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3345555556666777777888888888888889999999999999999998888764
No 87
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=70.75 E-value=21 Score=34.64 Aligned_cols=68 Identities=28% Similarity=0.392 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLS------NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~------nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.++.-+.++.+..+.+.+|.+.+..++.. ..++-..+.++.....++....+++++++..|..+|+.+
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555666666776666666542 345567777777777777666677777777777776666
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.09 E-value=88 Score=28.90 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHHHHHHHHhhhc---hhhHHhHHHHHHHHhcCCCC----CCc-------cchhhhh--
Q 022776 7 AQELIHLLDAAKSDMVVGLKLREASLLKLMLEYT---DDQLADFMAWFDLLRQKPKD----GEP-------KSIEVSA-- 70 (292)
Q Consensus 7 ~~E~~~~lEaAk~dl~LGlKerE~sl~kl~lEla---EDDLeDFka~~~~Lt~elke----nSe-------K~kEVsA-- 70 (292)
.+|...+|-+--++|.-+.+ ..|..++-+ +++|+|.++....|..+-.. +.. =..+|..
T Consensus 34 ~ee~na~L~~e~~~L~~q~~-----s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 34 AEEGNAQLAEEITDLRKQLK-----SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444455554444 446666666 99999999999888766111 100 0111111
Q ss_pred -----hhhhhhhhhhhHHhh--h--------hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 71 -----FLDERAFLWNQYKVM--E--------NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 71 -----LLaEKdFVWNQ~k~M--E--------~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
|+++.+-+-.+++-+ + -.|..++-.+++.+-.-|-.|..|-+.+++.-+..++=.-+|+||+..|
T Consensus 109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 109 EENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333322 1 1355667777888888888888888888888888888888888888877
Q ss_pred Hhh
Q 022776 136 AQM 138 (292)
Q Consensus 136 aeM 138 (292)
..|
T Consensus 189 ~q~ 191 (193)
T PF14662_consen 189 SQM 191 (193)
T ss_pred Hhh
Confidence 655
No 89
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.06 E-value=19 Score=30.92 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=21.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 119 LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 119 s~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
..+.+..+||..|+.++.+ ++.++..|+...+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~-------~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEK-------KEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4455667778888887774 555555555555444
No 90
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=69.94 E-value=29 Score=31.27 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=27.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhccc---chhhHHHHHHHHHHHHHh
Q 022776 114 TEQLQLSNNEKDETIAKLKTQIAQMETGSK---KWNTEISRLTQELELLRK 161 (292)
Q Consensus 114 ~E~LQs~nqeKDdeI~RLqaKlaeMe~~~K---kk~eEIs~L~~ELe~lrk 161 (292)
+..|+..--++..++..|+.++..|.--.. .-..||..|..++..++.
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~ 99 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRA 99 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454444555666666666665543332 234567777777766654
No 91
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=69.68 E-value=44 Score=30.20 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=49.1
Q ss_pred hhhhhHH-----------hhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 77 FLWNQYK-----------VMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ---LSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 77 FVWNQ~k-----------~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQ---s~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
-+|+||. -|+++|+..+..-+....|=...+..|.+.+..|. ..-..=+.+|..|+.++..|+...
T Consensus 22 ~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 22 KLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788874 46778887777766666666666666666555544 333444778888988888777776
Q ss_pred cchhhHH
Q 022776 143 KKWNTEI 149 (292)
Q Consensus 143 Kkk~eEI 149 (292)
.....++
T Consensus 102 ~~~l~~~ 108 (206)
T PF14988_consen 102 AEKLQEA 108 (206)
T ss_pred HHHHHHH
Confidence 6655544
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.58 E-value=22 Score=31.89 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=41.8
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh-hHHHHHHHHHHHH
Q 022776 86 ENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN-TEISRLTQELELL 159 (292)
Q Consensus 86 E~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~-eEIs~L~~ELe~l 159 (292)
|+++..+|.....||..-.+...+.+.....++..-.++|.+|.++++++..+.-++++++ .|..+|..+|..+
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~ 130 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQL 130 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 5555666666666666666666666666666666666666666666666665555554333 2244444444443
No 93
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.57 E-value=70 Score=30.42 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=50.2
Q ss_pred HhHHHHHHHHhcCCCCC---Cccchhhhhhhhhh-hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022776 45 ADFMAWFDLLRQKPKDG---EPKSIEVSAFLDER-AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST 114 (292)
Q Consensus 45 eDFka~~~~Lt~elken---SeK~kEVsALLaEK-dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~ 114 (292)
+.|++-+..+...+.++ +.+..+--..|++| ..+-.||..=|..|...++.|+.|+.-+..+++.....+
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~ 183 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEA 183 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46888777777776664 34455555666665 457799999999999999999999976665555544433
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.51 E-value=84 Score=34.88 Aligned_cols=113 Identities=10% Similarity=0.120 Sum_probs=56.4
Q ss_pred HhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 022776 45 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK 124 (292)
Q Consensus 45 eDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeK 124 (292)
.+|..=+.-....+ .++..++.+-+.+..=..+++..+..+|....+.+..++....+.+..+...++.+...-.+-
T Consensus 694 ~~f~~~L~~~~~~~---p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~ 770 (1311)
T TIGR00606 694 QEFISDLQSKLRLA---PDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770 (1311)
T ss_pred HHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444333332 223333333333333334556666666665544444555555666666665555555555555
Q ss_pred hhHHHHHHHHHHhhhhcccch------hhHHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKW------NTEISRLTQELELLR 160 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk------~eEIs~L~~ELe~lr 160 (292)
+.++..+++++..++++.+.. ..+|..|+..|+.+.
T Consensus 771 ~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554443333 455555555555443
No 95
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=34 Score=34.92 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH-HHHHHHHHHhhc
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR-LTQELELLRKSR 163 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~-L~~ELe~lrksr 163 (292)
.+++.=+.+.+.+...|.++|.++.-|+.++. +...++++ |...++.+++-|
T Consensus 93 ~~~q~e~~~~~~~~~~N~e~dke~~~le~~L~-------~~~~e~~~~lq~~~e~~~kkr 145 (438)
T COG4487 93 LALQDEIAKLEALELLNLEKDKELELLEKELD-------ELSKELQKQLQNTAEIIEKKR 145 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555566677777776666665 33444444 444444444444
No 96
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=69.18 E-value=12 Score=28.38 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=56.7
Q ss_pred HHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHhhh
Q 022776 44 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA---EVDRANERIEKLLASTEQLQLS 120 (292)
Q Consensus 44 LeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~---EvaQAnE~iqKLlq~~E~LQs~ 120 (292)
|+||...++.|=.++..+ -.+|..|-+. +++.+.-++..+...++.-.. ...+.......++...+.+...
T Consensus 3 le~f~d~~~~LP~el~r~---l~~irelD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l 76 (105)
T PF12998_consen 3 LEDFLDSLENLPAELQRN---LTLIRELDAK---SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALEL 76 (105)
T ss_dssp HHHHHTSGGGHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHH---HHHHHHhhhh---HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554443321 1222222222 566777777777766665543 3346666677777777777777
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 121 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 121 nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
.++|=....++..-+ +.-|.+|..++..
T Consensus 77 ~deKv~lA~~~~d~v----------~~hi~rLD~dl~~ 104 (105)
T PF12998_consen 77 SDEKVALAQQAYDLV----------DRHIRRLDQDLKK 104 (105)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Confidence 788877777666655 4566666665543
No 97
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.80 E-value=14 Score=29.71 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.|++.+.+|...-..|++||.||..-+.-+..-.-+-.+-..+|.+++..++-
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888899999998664433333333444444445555555544
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.47 E-value=17 Score=38.37 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=23.2
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 131 LKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 131 LqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|+.++..+..+.|.++|++..|+.|++.||+.
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444458899999999999999986
No 99
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.47 E-value=32 Score=34.65 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=43.8
Q ss_pred hhHHhhhh----hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH-------HHHHhhhhcccchhhH
Q 022776 80 NQYKVMEN----DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLK-------TQIAQMETGSKKWNTE 148 (292)
Q Consensus 80 NQ~k~ME~----Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLq-------aKlaeMe~~~Kkk~eE 148 (292)
||+|+--. ....+|-.++.-..+--|.+++-|+..++||..||+=-+++.+.+ .+...||.+.-..+||
T Consensus 63 ~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 63 KQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56665322 222355556666777778888888888888888876544443332 2333444444444444
Q ss_pred HHHHHHHHH
Q 022776 149 ISRLTQELE 157 (292)
Q Consensus 149 Is~L~~ELe 157 (292)
...|+-.|+
T Consensus 143 n~~lqlqL~ 151 (401)
T PF06785_consen 143 NQCLQLQLD 151 (401)
T ss_pred HHHHHHhHH
Confidence 444444333
No 100
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.13 E-value=37 Score=26.12 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
.+..+|+|||.--.|+..==. .|-. -..+-+..|.||.+.+.+++....+-...|..+..++.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGe----kLSk---~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGE----KLSK---KELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHH----HHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888887777642111 1222 23445667888888888777555544444444444444
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.96 E-value=9.4 Score=33.16 Aligned_cols=90 Identities=13% Similarity=0.250 Sum_probs=31.0
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDL---TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dy---t~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
.|+..+.+.++=+=.|+..+.... -..+..+...++.....+..|...+..|...-.+|..-|..|++++.-+....
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555554444332 22344444555555555555555555555555555555555555555333333
Q ss_pred cchhhHHHHHHHH
Q 022776 143 KKWNTEISRLTQE 155 (292)
Q Consensus 143 Kkk~eEIs~L~~E 155 (292)
.-..+.+.+|+.|
T Consensus 161 ~~~e~k~~~l~~E 173 (194)
T PF08614_consen 161 NMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.81 E-value=32 Score=32.59 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=43.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 90 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 90 t~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
..-+..-+.|..+.......|.+.+++|+....+=+.+|..|+.+..++...-.+.-.+...+..++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777777778888888888888888888888888777665444343333444443333
No 103
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.65 E-value=51 Score=31.56 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhcC
Q 022776 148 EISRLTQELELLRKSRT 164 (292)
Q Consensus 148 EIs~L~~ELe~lrksr~ 164 (292)
||.+|.+.++.|-+.-+
T Consensus 272 Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 272 EIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45555555555544444
No 104
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.55 E-value=44 Score=26.45 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhccc----chhhHHHHHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSK----KWNTEISRLTQELEL 158 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~K----kk~eEIs~L~~ELe~ 158 (292)
.|.+...-.+..+...-+.++..-+.--.|+..++.++-+||..-. .-.+||.+|+.+|+.
T Consensus 11 ~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 11 QEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433333334444433333334445555555555554332 234677777777764
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.46 E-value=36 Score=29.61 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=10.0
Q ss_pred hhhcccchhhHHHHHHHHHHHH
Q 022776 138 METGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 138 Me~~~Kkk~eEIs~L~~ELe~l 159 (292)
.+...++++.-|+.|.||+..|
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555444
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.41 E-value=94 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQL 119 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs 119 (292)
.+.++-.+.|+.--|.-..+.+....+.. +..+...++.-|.+.+|.||.
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~---~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGS---ELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445544544444444333332 233333344444444444443
No 107
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=66.34 E-value=15 Score=41.50 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=39.3
Q ss_pred hhhhHHHHHHH-----HHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcccccc
Q 022776 123 EKDETIAKLKT-----QIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNR 173 (292)
Q Consensus 123 eKDdeI~RLqa-----KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ 173 (292)
+|-+.+.-|+| .=.||..-..++++.|...+++|+.|. .|-+|||++-
T Consensus 1041 eKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQ---RAV~TPVvtd 1093 (1439)
T PF12252_consen 1041 EKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQ---RAVVTPVVTD 1093 (1439)
T ss_pred HhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHH---Hhhccccccc
Confidence 56677788877 334888899999999999999999984 5678999864
No 108
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.17 E-value=22 Score=36.86 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.......++.|+..++.|...-.+-.++|..++..+.+|.....+...+..+|+.++...+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666667777777777666666666666666666666443
No 109
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.96 E-value=67 Score=26.24 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
..++-|..|+.++..++...+++.+.|..+.+.++.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777777777776654
No 110
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=65.21 E-value=70 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
+..+-+..-.+++......+++|+.|+.+|+..+.-|-
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444778889999999988776653
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.18 E-value=37 Score=36.10 Aligned_cols=26 Identities=27% Similarity=0.343 Sum_probs=15.9
Q ss_pred HHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 133 TQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 133 aKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
+.+..++...+.++.+|.+|+.+|+.
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555556777777777766653
No 112
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=64.96 E-value=89 Score=27.60 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=53.7
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-----HHHHHH----HHHhhhhcccc
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDET-----IAKLKT----QIAQMETGSKK 144 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDde-----I~RLqa----KlaeMe~~~Kk 144 (292)
-+.|+|--+.-+=..-.+.+...-.+++++.+.++++.+..++.=..+..+... ..+|.+ +.+.++...++
T Consensus 27 l~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 27 VYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888877655555556777777888888888888877766632222222222 333433 44456655554
Q ss_pred -hhhHHHHHHHHHHHHHhhcC
Q 022776 145 -WNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 145 -k~eEIs~L~~ELe~lrksr~ 164 (292)
.+++|....-..+++|.+-+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ 127 (155)
T PRK06569 107 SINQNIEDINLAAKQFRTNKS 127 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 35566666555556655443
No 113
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=64.82 E-value=39 Score=30.24 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh-------cccchhhHHHHHHHHHHHHH
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET-------GSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~-------~~Kkk~eEIs~L~~ELe~lr 160 (292)
+...++-+.+++-.....+.+.+|..|+.++-+++- .-...+.||++|+.+.+.|.
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455566777777777777766555 34566678888876666554
No 114
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=42 Score=35.94 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=80.7
Q ss_pred hhchhhHHhHHHHHHHHhcCCCCCCccch---h-hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022776 38 EYTDDQLADFMAWFDLLRQKPKDGEPKSI---E-VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAS 113 (292)
Q Consensus 38 ElaEDDLeDFka~~~~Lt~elkenSeK~k---E-VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~ 113 (292)
+.++.++++++.=|..|+.++.+.++-.. | ==+||.||--+--||.-||.+|- .++ .|.+|-+|+..+-+..
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd-~~R---~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYD-LAR---TELDQTKEALGQYRSQ 79 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHH
Confidence 34677888999999999999877532111 1 12488999999999999999997 333 5778888777665543
Q ss_pred HH------------HHhhhh---hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 114 TE------------QLQLSN---NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 114 ~E------------~LQs~n---qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
-. .||.++ ..+--.|..|++++.+......+..+|..+|...-+.+.
T Consensus 80 hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~ 141 (772)
T KOG0999|consen 80 HKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLK 141 (772)
T ss_pred HHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 244332 234556777777777777777777777777666555443
No 115
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=64.75 E-value=30 Score=29.04 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
+|..|-.+|..|+..+..+ ...-+++|.+++...+ ...+..+.+|..|+..|+.-....-+.+|
T Consensus 4 ~a~~al~ki~~l~~~~~~i---~~~~~~~I~~i~~~~~---~~~~~l~~~i~~l~~~l~~y~e~~r~e~~ 67 (149)
T PF07352_consen 4 EADWALRKIAELQREIARI---EAEANDEIARIKEWYE---AEIAPLQNRIEYLEGLLQAYAEANRDELT 67 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHCTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHhcc
Confidence 4444555555555554444 4555788988888775 45567888999999999888877766665
No 116
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.24 E-value=83 Score=35.55 Aligned_cols=117 Identities=24% Similarity=0.275 Sum_probs=77.8
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHHHH-HhcC-----C---CCC-Cccch----hhhhhhhhhhhhhhhH----HhhhhhH
Q 022776 28 REASLLKLMLEYTDDQLADFMAWFDL-LRQK-----P---KDG-EPKSI----EVSAFLDERAFLWNQY----KVMENDL 89 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~~~-Lt~e-----l---ken-SeK~k----EVsALLaEKdFVWNQ~----k~ME~Dy 89 (292)
|....++..++.+|.-+.||+--+|. |-+| | +.| .+|-+ +|-.|=+=.+ +-.|+ +-+|.|+
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee-~~EQL~Esn~ele~DL 495 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE-MNEQLQESNRELELDL 495 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44556777888899999999987774 3333 1 112 11111 2222211111 11222 3455555
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 90 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 90 t~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
. .|+++|+-++..|++.++..|-...++|.+|.+...-++ +.++.|..|.++-.+.
T Consensus 496 r-------eEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva-------~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 496 R-------EELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVA-------HLQDQLQELTDQQESS 551 (1243)
T ss_pred H-------HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhh
Confidence 5 789999999999999999999999999999999998888 6677777777755443
No 117
>PF15294 Leu_zip: Leucine zipper
Probab=64.22 E-value=44 Score=32.14 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=58.8
Q ss_pred cchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 64 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLA---STEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 64 K~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq---~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
..+||..|.+|++=.=|.++.+|..++..++.|..--+|. +.|+. +...... .--+..+|..|+.+|+.|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L----~~lq~~~~~~~~k~~-~~~~~q~l~dLE~k~a~lK~ 204 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL----KELQDEQGDQKGKKD-LSFKAQDLSDLENKMAALKS 204 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccc-ccccccchhhHHHHHHHHHH
Confidence 6799999999999999999999999999998775443333 33332 1111111 12356788899999986655
Q ss_pred ccc----chhhHHHHHHHHHHHH
Q 022776 141 GSK----KWNTEISRLTQELELL 159 (292)
Q Consensus 141 ~~K----kk~eEIs~L~~ELe~l 159 (292)
... .......-|+..|..-
T Consensus 205 e~ek~~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 205 ELEKALQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 422 2222334455555543
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.70 E-value=54 Score=27.73 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=28.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccch-hhHHHHHHHHHHHHHh
Q 022776 115 EQLQLSNNEKDETIAKLKTQIAQMETGSKKW-NTEISRLTQELELLRK 161 (292)
Q Consensus 115 E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk-~eEIs~L~~ELe~lrk 161 (292)
++|.....+-..+|..|++++..+....... .++++++..+...+++
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444444456666677776666544332 4578888877777664
No 119
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=63.61 E-value=16 Score=32.12 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhHHHH---HHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 105 ERIEKLLASTEQLQLSNNE-KDETIAK---LKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqe-KDdeI~R---LqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.++..|+..+.......++ .+..++. -+.|..|||+ ..+|.+|++||+..|.
T Consensus 84 ~At~~LV~av~~~~~~~~~~~~~d~s~ls~~~~k~~eMe~-----Qv~iL~lE~eLe~ar~ 139 (152)
T PF01608_consen 84 KATENLVAAVKAAIEQEEEQEEVDFSKLSLHQAKRQEMEA-----QVRILKLEKELEKARK 139 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH----------HHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3345555555554333333 2233443 3678889987 4568999999988775
No 120
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.19 E-value=44 Score=27.09 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAK-------LKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~R-------LqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
|..-+.-|-||.+-|+=|+-.+++|..-|..=..++.- |..+-.++...-..|.+++.-|-..++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44456678899999999999999988666554444443 444555555555567776666655443
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.17 E-value=1.4e+02 Score=32.31 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHHHHHhhhchhhHHhHHHHHHHHhcC
Q 022776 31 SLLKLMLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 31 sl~kl~lElaEDDLeDFka~~~~Lt~e 57 (292)
...|.-+|++.++|..|..-+.-|+..
T Consensus 289 ~e~Q~qLe~a~~als~q~eki~~L~e~ 315 (717)
T PF09730_consen 289 QESQKQLEHAQGALSEQQEKINRLTEQ 315 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999999999999999887
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.13 E-value=1.4e+02 Score=28.20 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHHHHhhhchhhHHhHHHHHHHHhcCCCC-------------CCccchhhhhhhhhhhhhhhhHHhhhhhHHH
Q 022776 30 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKD-------------GEPKSIEVSAFLDERAFLWNQYKVMENDLTS 91 (292)
Q Consensus 30 ~sl~kl~lElaEDDLeDFka~~~~Lt~elke-------------nSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~ 91 (292)
+.-++.-++-.+-+++||+.-+..+..++.+ +-....|..||..|-+-.=.+...+|.+...
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778888777777776444 2355666677766666555555555554443
No 123
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.12 E-value=10 Score=36.95 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 122 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
|-|...|.-|+++|.|.+.-..+-+.||..|+-.|--||-
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999988877764
No 124
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=63.07 E-value=50 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=33.2
Q ss_pred cchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHH
Q 022776 64 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANE 105 (292)
Q Consensus 64 K~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE 105 (292)
-+=||.+|+.=+-++-||++--.+..- +|..|..|..+.+|
T Consensus 425 ~n~El~sLqSlN~~Lq~ql~es~k~~e-~lq~kneellk~~e 465 (861)
T PF15254_consen 425 CNLELFSLQSLNMSLQNQLQESLKSQE-LLQSKNEELLKVIE 465 (861)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHH-HHHHhHHHHHHHHH
Confidence 356899999999999999988877765 78888888877664
No 125
>PRK03918 chromosome segregation protein; Provisional
Probab=62.92 E-value=99 Score=31.78 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=6.0
Q ss_pred chhhHHhHHHHHHHHh
Q 022776 40 TDDQLADFMAWFDLLR 55 (292)
Q Consensus 40 aEDDLeDFka~~~~Lt 55 (292)
+-+....+..-+..|.
T Consensus 167 ~~~~~~~~~~~~~~l~ 182 (880)
T PRK03918 167 LGEVIKEIKRRIERLE 182 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 126
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.76 E-value=1e+02 Score=26.75 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHH
Q 022776 28 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERI 107 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~i 107 (292)
|+...++-.++.-+-||+...+--..+.. ++.-..+||..|-.+-..|=.-++.++.|+..+-..|+.-... .
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~---daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~----l 89 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLIL---DAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE----L 89 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 44555555566666666665554333332 2334567888888899999999999999999766655443333 4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.+..+.+|.+.+..-..-|..+.++..+|.-. .+..++.|..+|..|
T Consensus 90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~---~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE---SKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Confidence 7777888888888888888888887765555433 344555555555443
No 127
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.67 E-value=1.2e+02 Score=28.01 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred hhhhhhhhhhhhh---hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 67 EVSAFLDERAFLW---NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 67 EVsALLaEKdFVW---NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
|+..+-.|-.|+= +....|..+++..+ .|..|.+++|..|-.-+.++.+...+..+.|.|+..++.
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~----eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHV----EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444442 22333444444333 356677888888888888888777777777777765554
No 128
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.62 E-value=65 Score=24.33 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.+++-+..|+.++..++...++....+..+..+++.+++.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999988888888888888888888887764
No 129
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.60 E-value=93 Score=26.11 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=40.6
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaK 134 (292)
+-|+|.-+.-+=..-...+...-.+++++.+.++.++...+. |.....+-++.|..-+.+
T Consensus 26 ~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~ 86 (164)
T PRK14473 26 RTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQER 86 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888776555555667888888888888888888877766 444445555555544443
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.55 E-value=40 Score=32.24 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
.+-..+.+.-.+++.-+.++..++.|+...++=-.+|..++.++.+.+.+.++.+.+|..|+..+
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777777777777666666666666666677666666666666666665544
No 131
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.54 E-value=1.3e+02 Score=31.95 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
++...+....++|.||..|++.+..+-- |-|-.+-|..
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~~~~a-----v~p~~~~~~~ 667 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIAQLLA-----VMPSDSYCSA 667 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccccccC
Confidence 3334456667888999999988876642 5666666644
No 132
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.43 E-value=52 Score=34.24 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=64.2
Q ss_pred hhhhhhHHhhh---------------hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 76 AFLWNQYKVME---------------NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 76 dFVWNQ~k~ME---------------~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
.-.|.|-. || .|+..+||=-+-+++++.+.|..+...+.+||-.--.=--+|.+++-+.+
T Consensus 312 ~~~W~QA~-~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~---- 386 (508)
T KOG3091|consen 312 QRIWRQAM-KDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHV---- 386 (508)
T ss_pred HHHHHHHh-hcCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----
Confidence 45688865 44 47778888888999999999999999999999333333345666666666
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 141 GSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 141 ~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
+.-.+|-++-..+|-+|++-. ++||
T Consensus 387 ---~Ls~RiLRv~ikqeilr~~G~-~L~~ 411 (508)
T KOG3091|consen 387 ---ELSHRILRVMIKQEILRKRGY-ALTP 411 (508)
T ss_pred ---HHHHHHHHHHHHHHHHhccCC-cCCc
Confidence 567889999998888887544 5655
No 133
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=62.40 E-value=55 Score=33.96 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=14.3
Q ss_pred hhhhhHHhhhhhHHHhhhh
Q 022776 77 FLWNQYKVMENDLTSKINS 95 (292)
Q Consensus 77 FVWNQ~k~ME~Dyt~~LK~ 95 (292)
|+|.|+.-|++....+...
T Consensus 343 ~~~q~~~~~~~~l~~~~~~ 361 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQA 361 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5568899999888866554
No 134
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.27 E-value=26 Score=39.81 Aligned_cols=47 Identities=26% Similarity=0.425 Sum_probs=31.2
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 022776 85 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKL 131 (292)
Q Consensus 85 ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RL 131 (292)
|+.=+-.+++..+++|.++++.+++|-+.+..+++.-..-+--|..+
T Consensus 894 i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 894 IDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKA 940 (1293)
T ss_pred HHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHH
Confidence 44445567888899999999999999777666554433333333333
No 135
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=62.25 E-value=52 Score=30.00 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=7.8
Q ss_pred cchhhHHHHHHHHHHHHHh
Q 022776 143 KKWNTEISRLTQELELLRK 161 (292)
Q Consensus 143 Kkk~eEIs~L~~ELe~lrk 161 (292)
+.+++.+..+..+|+.++.
T Consensus 185 ~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 185 KEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 136
>PRK09039 hypothetical protein; Validated
Probab=61.74 E-value=86 Score=30.09 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKT-------QIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqa-------KlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
...+..|...+..+.....+..-.|.+|+. +++.++......+++.......++.|...
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555545555544 44555566666666666666666666543
No 137
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=60.82 E-value=30 Score=31.88 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH--------------HHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 94 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT--------------QIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 94 K~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa--------------KlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
|.-.+|+.+=--.|-.|...+.++......++..+..|+. ++........-+.+.+..|+.|+..|
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAEL 99 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence 3334444444444555555555555555555555555543 33322222333445556666666666
Q ss_pred HhhcC
Q 022776 160 RKSRT 164 (292)
Q Consensus 160 rksr~ 164 (292)
|..-.
T Consensus 100 r~~l~ 104 (202)
T PF06818_consen 100 REELA 104 (202)
T ss_pred HHHHH
Confidence 66544
No 138
>PRK10869 recombination and repair protein; Provisional
Probab=60.69 E-value=52 Score=33.33 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
....++..+=++.+++.+.+++++...++...++..|+-++.|++...= ...|-.+|+.+...|....
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l-~~gE~eeL~~e~~~L~n~e 221 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP-QPGEFEQIDEEYKRLANSG 221 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777777777777777777766544 2445555666655555443
No 139
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.50 E-value=90 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=15.6
Q ss_pred HHHHHHHhhhchhhHHhHHHHHHHHhcC
Q 022776 30 ASLLKLMLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 30 ~sl~kl~lElaEDDLeDFka~~~~Lt~e 57 (292)
+.+++..+|...-+.++...-..-|..+
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e 165 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEE 165 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655555544433
No 140
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=60.32 E-value=1.1e+02 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=19.9
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHH
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTS 91 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~ 91 (292)
-|.+.|..|+-+|-+|..+++++..
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~k 146 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQK 146 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887763
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.22 E-value=70 Score=34.54 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 166 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~ 166 (292)
.+...-.++..++...-+.|...-++-.+.|..++.++. +....|..|+.+|+.+.+|.++.
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~-------E~E~~L~eLq~eL~~~keS~s~~ 650 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLK-------ESEQKLEELQSELESAKESNSLA 650 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444455555555554 44555666666666666666543
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.20 E-value=1e+02 Score=32.27 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=16.1
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHHHHHhcCC
Q 022776 28 REASLLKLMLEYTDDQLADFMAWFDLLRQKP 58 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~~~Lt~el 58 (292)
+|..-+....+..+++.+.-+.-++-|..+|
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555553
No 143
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=59.57 E-value=1.1e+02 Score=25.77 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=45.9
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKla 136 (292)
=+.|+|.-+.-+=.+-...+...-.++.++.+.++.++...++ |+...++....|..-+....
T Consensus 25 l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14471 25 LAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKE 88 (164)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678898887766667778888888889998888888887776 66666666666655555443
No 144
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=59.32 E-value=1.1e+02 Score=26.00 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHhh---hhhhhhhHHHHHHHHH
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE----QLQL---SNNEKDETIAKLKTQI 135 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E----~LQs---~nqeKDdeI~RLqaKl 135 (292)
++-.++..-|-.-||- |+++==..|..+|..+..|+..---.+.+-++.+. .|+. ....-..+|...+..+
T Consensus 30 ~~ke~lge~L~~iDFe--qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~ 107 (177)
T PF13870_consen 30 RQKEELGEGLHLIDFE--QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEEL 107 (177)
T ss_pred HHHHHhcCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566664 55555567777887777777665444433333222 2221 1111122222222233
Q ss_pred HhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 136 AQMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 136 aeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
++........+.+..++......|+..-+.-..|
T Consensus 108 ~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 108 AKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3223333344555555555566665555544445
No 145
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=59.23 E-value=1.2e+02 Score=27.87 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=40.6
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKla 136 (292)
+.|+|.-+.-+=.+-...+...-.+++++.+.+++++...++ |+...++.+..|...+.+..
T Consensus 23 ~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~ 85 (250)
T PRK14474 23 RRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAAD 85 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888776555555567777777788887777777766555 55555666655555554433
No 146
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=59.22 E-value=1.1e+02 Score=30.76 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=74.7
Q ss_pred HHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022776 44 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE 123 (292)
Q Consensus 44 LeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqe 123 (292)
+++.+-|=..|-.++..-+.|..|...-|+.-+=||.-|+.==.-.+-+++.-+.|..-=..+-.+--..+=+|-..+..
T Consensus 210 ~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~ 289 (391)
T KOG1850|consen 210 LEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTV 289 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHH
Confidence 33333333333333333356777777777777777777764222233344443333322222222212222334456778
Q ss_pred hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC------CCcccccccccccc
Q 022776 124 KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA------SDTPVLNRCTRIAG 179 (292)
Q Consensus 124 KDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a------~~tpvl~~ct~~~~ 179 (292)
+|.+|.+|+.++..+|-+-.-...|-..|...|+-+.---++ --||+..+|+...+
T Consensus 290 ~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k~~~~~la~pe~~~~~~~~~ 351 (391)
T KOG1850|consen 290 RDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAKNAMKDLATPESKPCIILDS 351 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccchhhhhhhhcCccccccccccc
Confidence 899999999999877766665555555555555555433333 24899999986333
No 147
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.17 E-value=87 Score=25.06 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 122 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+.+++-+..|+.++..|+...+.....+..|...++.+++.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999888888888888888888887764
No 148
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.16 E-value=1.1e+02 Score=25.77 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=40.2
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaK 134 (292)
+.|+|.-+.-+=..-...+.+.-.++.++.+.++.++...+. |+....+-.+.+..-+.+
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999876554445557788888888888888887777666 455444445555444443
No 149
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.96 E-value=65 Score=28.87 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
.....+..|....++...-.+...+.|..|..++.+.+.-
T Consensus 152 ~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 152 SVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333445555666666666554443
No 150
>PLN03188 kinesin-12 family protein; Provisional
Probab=58.71 E-value=76 Score=36.46 Aligned_cols=102 Identities=23% Similarity=0.261 Sum_probs=58.7
Q ss_pred hhhhhhhhhh----hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHHHHHh-
Q 022776 66 IEVSAFLDER----AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLA---STEQLQLSNNEKDETIAKLKTQIAQ- 137 (292)
Q Consensus 66 kEVsALLaEK----dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq---~~E~LQs~nqeKDdeI~RLqaKlae- 137 (292)
.|||||-+|| .|+-.+=|-+-. -|+. -+|+.|| |-.|+. ..|+.-+.++++......=..|+.+
T Consensus 1162 ae~s~l~~ereker~~~~~enk~l~~----qlrd-taeav~a---agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1162 AEISALKVEREKERRYLRDENKSLQA----QLRD-TAEAVQA---AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----HHhh-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777664 333333333222 2222 2555555 344443 4455556677776665555556665
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 138 METGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 138 Me~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
|+-+-++-+.||+.|.+-|-.=|--..| +.|..+.|-.
T Consensus 1234 ~~klkrkh~~e~~t~~q~~aes~l~~~~-~~~~~~~~~~ 1271 (1320)
T PLN03188 1234 IDKLKRKHENEISTLNQLVAESRLPKEA-IRPACNDDCM 1271 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhh-cCcccccccc
Confidence 7778788889999998877543333332 5677777654
No 151
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=58.55 E-value=99 Score=29.54 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 022776 144 KWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrksr 163 (292)
+++.|+++...-|+.|.+-|
T Consensus 201 kkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 201 KKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444444433
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.84 E-value=24 Score=27.37 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
+-..+|+.++..+..|| -+|.+|+.+-. ...++...|.++.+.|+.-|.
T Consensus 8 ~LE~ki~~aveti~~Lq-------~e~eeLke~n~-------~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQ-------MENEELKEKNN-------ELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555 23344444444 455777777777777776554
No 153
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.68 E-value=19 Score=33.91 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=8.6
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhc
Q 022776 33 LKLMLEYTDDQLADFMAWFDLLRQ 56 (292)
Q Consensus 33 ~kl~lElaEDDLeDFka~~~~Lt~ 56 (292)
++.+.+..-|.+.+ .++..|..
T Consensus 156 l~~L~~fd~~~i~~--~~~~~l~~ 177 (344)
T PF12777_consen 156 LQRLKNFDKDNIPE--ATIKKLKK 177 (344)
T ss_dssp HHHHHHS-GGG--H--HHHHHHHC
T ss_pred HHHHHhhccccccH--HHHHHHHH
Confidence 44444554555543 23444543
No 154
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=57.55 E-value=19 Score=38.38 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 107 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 107 iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
...|+.-+-+|+.+.+.||.++..-++.+.+......+.+.+|.+|+.||...|+
T Consensus 19 ~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 19 ARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 3455666778888999999999999999999999999999999999999999987
No 155
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.68 E-value=58 Score=36.77 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=27.0
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 143 KKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 143 Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
.+..+++.+|...-+.||+.=.-.+.-+|.+|-.
T Consensus 961 ~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~ 994 (1174)
T KOG0933|consen 961 HEAREELKKLQEKKEKLEKTVNPKNMDMLERAEE 994 (1174)
T ss_pred hHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4557888888888889998888777778888754
No 156
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=56.56 E-value=1.3e+02 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=36.7
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
-+-|.|+-+.-|=..=...+...-.+++++.+.++++++..+. |+....+-.+.|...+...
T Consensus 41 L~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 41 LIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567787765544444446666666666666666666555544 5555555555555555444
No 157
>PF13166 AAA_13: AAA domain
Probab=56.24 E-value=2.2e+02 Score=28.67 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+.+++.++..++...+..+.+|..++.++..++..
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666665555543
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.06 E-value=2e+02 Score=32.11 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=35.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaK 134 (292)
...+.++.|...|-..+++|....+.|+..-.+|+..|.-.+++
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46677888888888888888888888888888888877777653
No 159
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=55.96 E-value=1.5e+02 Score=26.72 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=38.8
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKT 133 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqa 133 (292)
-+.|+|.-+.-+=..-...+...-.+++++.+.++.+++..++ |+....+..+.+..-+.
T Consensus 22 L~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~ 82 (246)
T TIGR03321 22 LKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKE 82 (246)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888776555555567777777888887777777666655 55555555555554443
No 160
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.94 E-value=74 Score=32.32 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=48.9
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+|++.+.+||. .++.++.......++|+..+..+ ..+|..+..++.+-+.+.++.+..|+.+.+.|+.|
T Consensus 38 ~~l~q~q~ei~----~~~~~i~~~~~~~~kL~~~lk~~-------e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIA----ALEKKIREQQDQRAKLEKQLKSL-------ETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 67777777766 33444555555556666555554 45677777777777777778888888888887777
Q ss_pred Hhhc
Q 022776 160 RKSR 163 (292)
Q Consensus 160 rksr 163 (292)
..-+
T Consensus 107 ~~q~ 110 (420)
T COG4942 107 EVQE 110 (420)
T ss_pred HHHH
Confidence 6544
No 161
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.76 E-value=38 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
+...|.+++.++-...+....+...++.+|+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554333333333333333333333
No 162
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=55.10 E-value=1.2e+02 Score=30.04 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=40.2
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaK 134 (292)
-+.|+|.-+.-|=..-...+...-.++++|.+.++.+++..+. |+....+..+.|..-+..
T Consensus 18 L~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~ 79 (445)
T PRK13428 18 VWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARED 79 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678898876665556667777777888888888887766444 555555555555554443
No 163
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.82 E-value=71 Score=28.76 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=18.2
Q ss_pred hhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 120 SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 120 ~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
.++.-.+++..|+.++.+++....+...+++.+..+-+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444444444444444433
No 164
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=54.41 E-value=3.3e+02 Score=29.96 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCC---------------Ccc---chhh
Q 022776 7 AQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG---------------EPK---SIEV 68 (292)
Q Consensus 7 ~~E~~~~lEaAk~dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elken---------------SeK---~kEV 68 (292)
-+|-..||+.++--|.| +.+.+---.|-+-+-+-|.-+||..=..+|... ++| -.||
T Consensus 109 yQerLaRLe~dkesL~L-----QvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev 183 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQL-----QVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV 183 (861)
T ss_pred HHHHHHHHhcchhhhee-----hHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 45677788877766654 566666666777777888888887766664442 122 1233
Q ss_pred hhhhhhhhhhhhhHHhhhh---hHHHhhhh-----------hHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHH
Q 022776 69 SAFLDERAFLWNQYKVMEN---DLTSKINS-----------KRAEVDRANERIE----KLLASTEQLQLSNNEKDETIAK 130 (292)
Q Consensus 69 sALLaEKdFVWNQ~k~ME~---Dyt~~LK~-----------K~~EvaQAnE~iq----KLlq~~E~LQs~nqeKDdeI~R 130 (292)
|.| ==-|-.||+ ||-.+++. |..|+.|-.-.-. .--.++-.|+....+|+++|-|
T Consensus 184 SeL-------KLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 184 SEL-------KLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred HHh-------HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 332 122344552 23333322 2222222111000 0011244466667789999999
Q ss_pred HHHHHH-hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 131 LKTQIA-QMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 131 LqaKla-eMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
|..++. .|-.+-..+-+++.+|+.-||.+-..+.
T Consensus 257 l~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane 291 (861)
T KOG1899|consen 257 LLRTLVQRLMADGEHKSLRDNTLKNALESLMRANE 291 (861)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhch
Confidence 988765 5666666677777788888877766663
No 165
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.19 E-value=80 Score=31.21 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=34.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 117 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
+....+-.+.++..|.+.+.+.+...++.+++|.+|+++|..+...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~ 176 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTGKS 176 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 333344445566666667777777777889999999999998877654
No 166
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.09 E-value=64 Score=33.26 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=10.8
Q ss_pred ccchhhhhhhhhhhhhhh
Q 022776 63 PKSIEVSAFLDERAFLWN 80 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWN 80 (292)
+.-.|+.+.+.++-=-|+
T Consensus 164 ~~~~~~~~~~k~~~~~w~ 181 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWK 181 (555)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666666666
No 167
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.95 E-value=1.4e+02 Score=25.45 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=40.4
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
-+-|+|.-+.-|=.+=...+...-.++.++.+.++.+++..+. |+....+-.+.|..-+.+.
T Consensus 35 L~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a 97 (175)
T PRK14472 35 LKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYA 97 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888876554555557777777788877777777666554 5555555555555554443
No 168
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.56 E-value=44 Score=32.75 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc-ccccccccccccccCC
Q 022776 115 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP-VLNRCTRIAGATTSNA 185 (292)
Q Consensus 115 E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp-vl~~ct~~~~~~~s~~ 185 (292)
+.|.-..+-|...+.-|+.++.---........||.+++-|||..+ +.++... -|++|+. +.+.+..
T Consensus 84 qKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ--~~~~~~~~sl~~~st--pqk~f~~ 151 (307)
T PF10481_consen 84 QKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ--QAASSGDVSLNPCST--PQKSFAT 151 (307)
T ss_pred HHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCccccccCC--chhhccC
Confidence 3333344445555555555555333333344555666666666433 4444444 3788887 6654443
No 169
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.46 E-value=44 Score=31.83 Aligned_cols=75 Identities=15% Similarity=0.353 Sum_probs=50.1
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 85 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 85 ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+|+-....++.-..++.+....+..|......|..--.+|-.|+.|.+.-+.-|++-.=--=+|-++|+.||+.+
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 566566566665566666666666666555556666666667777777777666666666667888888888865
No 170
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=53.44 E-value=1.7e+02 Score=27.92 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=56.1
Q ss_pred HHhHHHHHHHHhcCCCCC------Cc--cchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHH----HHHHH
Q 022776 44 LADFMAWFDLLRQKPKDG------EP--KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANER----IEKLL 111 (292)
Q Consensus 44 LeDFka~~~~Lt~elken------Se--K~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~----iqKLl 111 (292)
|++++.+-++|+....+- .+ --..|.+||.--+..=+=..++|.-+...|..-+.|...+.|+ +..|+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445556666666543330 11 2235777777777777777788888887787777777666554 45677
Q ss_pred HHHHHHhhhhhhhhhHHHHHH
Q 022776 112 ASTEQLQLSNNEKDETIAKLK 132 (292)
Q Consensus 112 q~~E~LQs~nqeKDdeI~RLq 132 (292)
+.+++|.+-.++.-++..-|-
T Consensus 88 ~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666655555553
No 171
>PRK01156 chromosome segregation protein; Provisional
Probab=53.22 E-value=79 Score=33.00 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC-CCccccccccc
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA-SDTPVLNRCTR 176 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a-~~tpvl~~ct~ 176 (292)
|..++.++.++.....+.+.+|..|...+..+++..+. +.-||-..|-+
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~ 460 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT 460 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Confidence 44455555555556667777777788877777776551 12366555644
No 172
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.07 E-value=88 Score=32.27 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIA-KLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~-RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+.+...-+.|++.++.|+.-.+.=|..|. +|+.+-.++.......++++.+|...|+.|
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555433333333332 233333344444444455555554444444
No 173
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=52.85 E-value=67 Score=34.50 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=45.5
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
+.--..|..|...|..-+.|+.|+.-.+...++.++.|...+++=...+..++.+...|
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l 81 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL 81 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999998888888888888888877666665555444333
No 174
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.80 E-value=1.2e+02 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=21.6
Q ss_pred chhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcC
Q 022776 24 GLKLREASLLKLMLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 24 GlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~e 57 (292)
++...=..+++.--+++. ++.+|-.+|..|+..
T Consensus 22 ~l~~~~~~~~k~~~~l~~-~~~elg~~~~~Ls~~ 54 (218)
T cd07596 22 KLSKQAQRLVKRRRELGS-ALGEFGKALIKLAKC 54 (218)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 444444455555666665 788888888888776
No 175
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.69 E-value=1.8e+02 Score=30.34 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=71.4
Q ss_pred hhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhH---HhhhhhHHHhhhhhHHHHHHH
Q 022776 27 LREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQY---KVMENDLTSKINSKRAEVDRA 103 (292)
Q Consensus 27 erE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~---k~ME~Dyt~~LK~K~~EvaQA 103 (292)
+.++.-++.-++.+|..|++|+.--..+.. +.|..+++..-.=+=.|+ +..+.++...+...+-++.+.
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~--------~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l 344 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQRDSVDL--------NLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRAL 344 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 445566777889999999999975433321 111222211110011222 222344445556666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
+..++.|.+.+++++.. -..+...+.++.+++-+.+-..+--..|-...|.++=+....+++
T Consensus 345 ~~~~~~L~~~~~~l~~~----~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~ 406 (726)
T PRK09841 345 LEKRQTLEQERKRLNKR----VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGN 406 (726)
T ss_pred HHHHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 66666666666555422 123334455555666666666666667777777776666654443
No 176
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=52.49 E-value=1.3e+02 Score=27.81 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=51.5
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---------HHHhh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT---------QIAQM 138 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa---------KlaeM 138 (292)
+.++|-+|-=.|-+|..-+..+.-+ +-+..+|.+|.++.+.-.+.-|.+-.+.. .||.|.+. =+..+
T Consensus 121 ~K~ll~rR~ral~~~e~A~~~L~Ka-R~k~kev~~aE~~~~ea~~~Fe~IS~~~k---~El~rF~~~Rv~~Fk~~lve~~ 196 (218)
T cd07663 121 AKDLLYRRARALADYENSNKALDKA-RLKSKDVKQAEAHQQECCQKFEKLSESAK---QELISFKRRRVAAFRKNLIEMT 196 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777788888888887733 33455666665555554444444433322 24444433 12356
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 022776 139 ETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 139 e~~~Kkk~eEIs~L~~ELe~l 159 (292)
|...|-.++.++-|..=+..|
T Consensus 197 E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 197 ELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777776655443
No 177
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.75 E-value=1.5e+02 Score=27.08 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=3.1
Q ss_pred cccccc
Q 022776 171 LNRCTR 176 (292)
Q Consensus 171 l~~ct~ 176 (292)
|..|+=
T Consensus 269 l~~~~i 274 (423)
T TIGR01843 269 LQRLII 274 (423)
T ss_pred HhhcEE
Confidence 555554
No 178
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=51.55 E-value=48 Score=31.14 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 133 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa 133 (292)
.++.++.+.+++|....+.+......-+++|.+++.
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 27 KELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444333333333433333
No 179
>PRK01156 chromosome segregation protein; Provisional
Probab=51.44 E-value=1e+02 Score=32.16 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQL 117 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~L 117 (292)
.++....+.|.++...++.+
T Consensus 643 ~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 643 ILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 180
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.41 E-value=3.2e+02 Score=31.32 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=53.9
Q ss_pred hhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhh
Q 022776 20 DMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSK 96 (292)
Q Consensus 20 dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K 96 (292)
.+..|...+-.++|.-+.+.++..+.+-+.|=..|- .-+.|++.|.+.++|.=+||+.|---|. ++.+|
T Consensus 463 ~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~-------~r~~elsrl~a~~~elkeQ~kt~~~qye-~~~~k 531 (1195)
T KOG4643|consen 463 SLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN-------NRDLELSRLHALKNELKEQYKTCDIQYE-LLSNK 531 (1195)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456677777778887777777777777777666654 5678999999999999999999988887 44444
No 181
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.31 E-value=50 Score=28.25 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 144 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kk 144 (292)
+-.+...|...+++..+..+.|...+..+.+.+..++.++.+++.-...
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~ 181 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQ 181 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888777788888888888866654433
No 182
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.20 E-value=1.6e+02 Score=25.37 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 144 KWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
+.+.+|..|+.++|.+|-.=.-.+.+++--|..
T Consensus 135 ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~a 167 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDTLRWLVGVIFGCVA 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788889999888776533334444444443
No 183
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.02 E-value=74 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQL 119 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs 119 (292)
+..-..+++...+.|+.|...++.+..
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445666667777777777776653
No 184
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=50.94 E-value=1e+02 Score=34.64 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred HHHHHHhhhchhhHHhHHHHHHHHhcC---CCCCCccchhhhhhh
Q 022776 31 SLLKLMLEYTDDQLADFMAWFDLLRQK---PKDGEPKSIEVSAFL 72 (292)
Q Consensus 31 sl~kl~lElaEDDLeDFka~~~~Lt~e---lkenSeK~kEVsALL 72 (292)
.++.-+.++.+++|++...-|..+..- +.+-.+....+..++
T Consensus 209 ~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~ 253 (1353)
T TIGR02680 209 ALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFL 253 (1353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666555432 222234444444444
No 185
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=1e+02 Score=30.97 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=53.0
Q ss_pred cchhhhhhhhhhhhhh--hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHH-HHHHHhhh
Q 022776 64 KSIEVSAFLDERAFLW--NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQL-SNNEKDETIAKL-KTQIAQME 139 (292)
Q Consensus 64 K~kEVsALLaEKdFVW--NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs-~nqeKDdeI~RL-qaKlaeMe 139 (292)
+..||..+|...+.+= .+|+.+=++|+.+- ++..+-....+++..++.++. .++++|.++..+ +.++.
T Consensus 15 r~~el~~~L~~p~v~~d~~~~~~lske~a~l~-----~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~--- 86 (363)
T COG0216 15 RYEELEALLSDPEVISDPDEYRKLSKEYAELE-----PIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIK--- 86 (363)
T ss_pred HHHHHHHHhcCcccccCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---
Confidence 5567778888777664 56777777777442 233333444444444444442 234456665443 33443
Q ss_pred hcccchhhHHHHHHHHHHHHHhhc
Q 022776 140 TGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
+.+.+|..|+.+|+.|---.
T Consensus 87 ----~~~~~~~~le~~L~~lLlPk 106 (363)
T COG0216 87 ----ELEAKIEELEEELKILLLPK 106 (363)
T ss_pred ----HHHHHHHHHHHHHHHhcCCC
Confidence 77888999999999886443
No 186
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.38 E-value=66 Score=24.54 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=21.4
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 131 LKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 131 LqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++.++.+.+.-....-.+|..|+.+++.+|+
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666666666777888888888888774
No 187
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=50.24 E-value=82 Score=32.11 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhh---h--h--hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 94 NSKRAEVDRANERIEKLLASTEQLQLSNNE---K--D--ETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 94 K~K~~EvaQAnE~iqKLlq~~E~LQs~nqe---K--D--deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+..+.++++..+.|++|.+..++|+..-.. + . ..+..|..++.+.+....++-++-.+|..+|+.+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666677777766665533221 1 1 2577777777766666666666667777666665
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.20 E-value=92 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=31.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 115 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 115 E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
..|+....-.+.+|..|+.++.++....+..++..+.+..+++...+.
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 277 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKE 277 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334434444455577777777777777777777777777777665543
No 189
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.95 E-value=80 Score=29.40 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 129 AKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 129 ~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+|.+.+..|+|....+...+|+.|.+|++.||.-
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999864
No 190
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.82 E-value=93 Score=29.45 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 133 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa 133 (292)
|+.++++|++...+.++.+++.|..-++-++.|..|+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~ 256 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQK 256 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333333333333
No 191
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.76 E-value=34 Score=33.88 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=43.4
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 85 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 85 ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
||.+--+++|.| |+.|+|.... |+ -|||-++|.|-++|+- -+++++..-.----..|++||.+--
T Consensus 21 ~~~~~~~~~k~~--------e~~qkl~sr~---~~-~~ekke~i~r~n~k~~---d~v~~~~~~~~~~~erl~~lr~shi 85 (359)
T KOG4398|consen 21 MEKNSEGLLKTK--------EKNQKLYSRA---QR-HQEKKEKIQRHNRKLG---DLVEKKTIDLRSHYERLANLRRSHI 85 (359)
T ss_pred HHHhHHHHHHHH--------HHHHHHHHHH---HH-HHHHHHHHHHhhhhcc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554 3445555533 32 3577888888888653 3333332222222235788888887
Q ss_pred CCCccccccccc
Q 022776 165 ASDTPVLNRCTR 176 (292)
Q Consensus 165 a~~tpvl~~ct~ 176 (292)
-++|.|+-+--+
T Consensus 86 ~el~s~ifpi~e 97 (359)
T KOG4398|consen 86 LELTSVIFPIEE 97 (359)
T ss_pred HHHHheeeeHHH
Confidence 777877665443
No 192
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=49.57 E-value=54 Score=31.44 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
|.|......++.|+.+. ++...|+.+.+..-..-....+++|+.+...++.|+-|+.|
T Consensus 18 Eti~qi~~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kA 75 (297)
T PF11945_consen 18 ETILQIADALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKA 75 (297)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45555556666666444 57888888887776667778999999999999999999874
No 193
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=49.49 E-value=62 Score=29.71 Aligned_cols=63 Identities=32% Similarity=0.453 Sum_probs=29.2
Q ss_pred hhhhhHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 92 KINSKRAEVDRANERIEK----LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqK----Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.|..+..++.++++.+.. .....+.|..-..++..+|.+| ......+..|...|..+|+.+|.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l-------~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARL-------EEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444332 2222333444444444444444 44444666666666666666655
No 194
>PRK11519 tyrosine kinase; Provisional
Probab=49.03 E-value=1.7e+02 Score=30.38 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=62.7
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhh---hhhhhhhHHhhhhhHHHhhhhhHHHHHHHH
Q 022776 28 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDE---RAFLWNQYKVMENDLTSKINSKRAEVDRAN 104 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaE---KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAn 104 (292)
.+..-++..++.+|..|++|+.--..+... .|..+++.. -+=--++++..+.+.......++-.+..+.
T Consensus 274 ~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~--------~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~ 345 (719)
T PRK11519 274 QQLPEVRSRLDVAENKLNAFRQDKDSVDLP--------LEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLL 345 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 344556667888999999998754332211 111111110 000011222233344444445555555566
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD 167 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~ 167 (292)
+.++.|++..++++... ..+...+.++.+++.+.+-..+--..|-+.++.++-+.....
T Consensus 346 ~~~~~L~~~~~~l~~~~----~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~~ 404 (719)
T PRK11519 346 EKRKALEDEKAKLNGRV----TAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTV 404 (719)
T ss_pred HHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 66666666555554221 123333444444555444555556666666777766655443
No 195
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.98 E-value=1.4e+02 Score=24.12 Aligned_cols=65 Identities=17% Similarity=0.368 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEK--DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeK--DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+..++++..+.+...-.-+..++..-+.= .+++.+|+..|++|.-..+....+|.-++.-++.|-
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34666666566666655555555333332 677889999999888888888888877777766653
No 196
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=48.86 E-value=1.3e+02 Score=29.31 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=30.5
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQ 118 (292)
+.++.++...+..++...+..|......-+.+.++....+..+....+.++
T Consensus 142 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 192 (457)
T TIGR01000 142 FNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQ 192 (457)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777766666665555555555555555555555554443
No 197
>PRK12704 phosphodiesterase; Provisional
Probab=48.70 E-value=1.5e+02 Score=30.24 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.7
Q ss_pred cCCCCCCcceec
Q 022776 224 LGGKNGDNVVVN 235 (292)
Q Consensus 224 ~~g~~~~n~~~~ 235 (292)
--||.|+||-.=
T Consensus 225 iigreGrnir~~ 236 (520)
T PRK12704 225 IIGREGRNIRAL 236 (520)
T ss_pred eeCCCcchHHHH
Confidence 468899998543
No 198
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.60 E-value=3.5e+02 Score=28.83 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=16.6
Q ss_pred HhhhchhhHHhHHHHHHHHhcC
Q 022776 36 MLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 36 ~lElaEDDLeDFka~~~~Lt~e 57 (292)
+.+..++|+--=+.+|+|++.-
T Consensus 219 l~qq~~~e~~Vek~lfdY~~~~ 240 (622)
T COG5185 219 LDQQDRYELMVEKLLFDYFTES 240 (622)
T ss_pred HhhccHHHHHHHHHHHHHHHHH
Confidence 4455578888888899998765
No 199
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=48.60 E-value=2.4e+02 Score=33.80 Aligned_cols=19 Identities=26% Similarity=0.120 Sum_probs=7.4
Q ss_pred hcchhhhHHHHHHHHhhhc
Q 022776 22 VVGLKLREASLLKLMLEYT 40 (292)
Q Consensus 22 ~LGlKerE~sl~kl~lEla 40 (292)
.+.-++.++..++..++..
T Consensus 839 ~~~~~~~e~~~l~~~l~~~ 857 (1930)
T KOG0161|consen 839 EMRAKEEEIQKLKEELQKS 857 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3333334444444433333
No 200
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.49 E-value=82 Score=24.24 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.++|+.+++.-.. .+-....|.|.-+.+|.....+ ..+.+.|+..|..||+..|
T Consensus 14 Ld~~~rk~~~~~~---~~k~L~~ERd~~~~~l~~a~~e----~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 14 LDSLTRKNSVHEI---ENKRLRRERDSAERQLGDAYEE----NNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 4455555555443 3444456777777777764431 1234455555555555444
No 201
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.46 E-value=2.6e+02 Score=26.92 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHHhhhchhhHHhHHHHHHHHhcCCCCC-------------CccchhhhhhhhhhhhhhhhHHhhhhhHH---Hhhh
Q 022776 31 SLLKLMLEYTDDQLADFMAWFDLLRQKPKDG-------------EPKSIEVSAFLDERAFLWNQYKVMENDLT---SKIN 94 (292)
Q Consensus 31 sl~kl~lElaEDDLeDFka~~~~Lt~elken-------------SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt---~~LK 94 (292)
+|+.++.=+....|..+...+..|..++..- ..|=.|++.++. .|+.|-.+==... -.|+
T Consensus 250 ~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~----~~~~~~~~lP~lv~RL~tL~ 325 (388)
T PF04912_consen 250 ELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILP----RWDPYAPSLPSLVERLKTLK 325 (388)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHH
Confidence 3444555556677888888888887764221 122233333332 2554432211111 2467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
.-|.+++++..-+..|-+.+..++..-..=+.-|..++.++ ..+.+..+..+..|+..++.
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~---~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKF---KENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 78889999988888888888888888777778888888774 34444445555555555543
No 202
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.26 E-value=91 Score=25.62 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+..-+..++.|...++.|-..|-.+..+|..+++++.+.-...+....+-..+..+++.+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666667777666767777777777777766666666666666666666666
No 203
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=48.13 E-value=1.5e+02 Score=24.24 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=37.4
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaK 134 (292)
+-|+|.-+.-+=.+-.+.+.+.-.++.++.+.++.++...+. |.....+-...+...+.+
T Consensus 22 ~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~e 82 (156)
T PRK05759 22 MKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKR 82 (156)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777765554555557777777888888877777766665 444444444444444443
No 204
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.09 E-value=1.7e+02 Score=33.31 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=42.2
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
.+|+..=.|.++.+.=--.+-+-|.|.+..||..+|-|+.-+++=.-++..|+++|.+-+.+.
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 477777777777776555566667777788888888777666665555666666665444433
No 205
>PRK14139 heat shock protein GrpE; Provisional
Probab=47.98 E-value=23 Score=31.85 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
.+..|.+.++.|+....+-.+...|+++++.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~Aefe 63 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETE 63 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555555666667766653
No 206
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.89 E-value=43 Score=29.18 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc--cccccccccccccc
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP--VLNRCTRIAGATTS 183 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp--vl~~ct~~~~~~~s 183 (292)
+.+.+.+.+|+.....+|..|..+..+|.+++...... +..-...+..+.+.....|++ +|+.-.+|+..+..
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~---~~~~~~~~~~~~~~~~~~v~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL---PDQADEKLKSIPKAEKRPVDYEELLSYAHRISKFTSA 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccccccccccCCCCHHHHHHHHHHHHHhcCC
Confidence 45555666666667777777777766666443322111 111122233444555556666 78888887776665
No 207
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.76 E-value=63 Score=34.14 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=33.2
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSN 121 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~n 121 (292)
-+||+--=.-+..+|..+..|.+.-.|.+++|++.+..|+-..
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566777888888899999999999999988887443
No 208
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=47.67 E-value=1.6e+02 Score=30.32 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.2
Q ss_pred hcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHH
Q 022776 22 VVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVD 101 (292)
Q Consensus 22 ~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~Eva 101 (292)
.+-+|+-|+.++|.+|..+--|-+.|+..+-. -..-||.+|+.++-+-...
T Consensus 358 IVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~a---------------------------K~~k~EEEYas~~~kl~l~-- 408 (446)
T PF07227_consen 358 IVRIKQAEAKMFQLKADEARREAEGLQRIALA---------------------------KSEKIEEEYASRYLKLRLN-- 408 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hHHHHHHHHHHHHHhhhhH--
Confidence 44567777777777777777777777665432 2345899999988774443
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
-|.|.-+++...+..++.+-.+.+.--.|.+++++
T Consensus 409 eaee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~ 443 (446)
T PF07227_consen 409 EAEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQ 443 (446)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 34445566666666666666666666666666665
No 209
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.30 E-value=2.9e+02 Score=28.28 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=59.4
Q ss_pred hhhhhcchhhhHHHHHHHHhhhc-hhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhh
Q 022776 18 KSDMVVGLKLREASLLKLMLEYT-DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSK 96 (292)
Q Consensus 18 k~dl~LGlKerE~sl~kl~lEla-EDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K 96 (292)
...++-.|-|.+++|.+.+-|+. ++.-.=+..-|......+.. .-...+.++|+.=.-+-+++-.-.--.--.|+.-
T Consensus 353 R~~fldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~--~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~S 430 (507)
T PF05600_consen 353 RNQFLDELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQ--QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSS 430 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHh--cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcC
Confidence 34566678888999999999988 44322222222222222222 2234455555555555555443333222234443
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 022776 97 RAEVDRANER-------IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT 147 (292)
Q Consensus 97 ~~EvaQAnE~-------iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~e 147 (292)
.--|++-.+. +.|++...+.|+.-.++=-+++.+++-++..+-..+++.+.
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQK 488 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333 33333333333333333334555555555533333333333
No 210
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=47.27 E-value=1.1e+02 Score=30.22 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHH------------------------------HHHHHH-HhhhhhhhhhH
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEKL------------------------------LASTEQ-LQLSNNEKDET 127 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKL------------------------------lq~~E~-LQs~nqeKDde 127 (292)
|.||+.+ |-.|-.|+-.|.+-+..| +..+|. |++..|+=-..
T Consensus 48 ~~q~~~~-------i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~ 120 (338)
T KOG3647|consen 48 RDQYRSL-------IGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVR 120 (338)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
...+.+++.-.-++.-+....|++-+.|||-.||
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rk 154 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRK 154 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 211
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.98 E-value=42 Score=27.24 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=21.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 117 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
|+.-.|.==|+|.=||.++. +.++....|.+|.+.++.+|.
T Consensus 9 LE~KIqqAvdtI~LLqmEie-------ELKekn~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIE-------ELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHH
Confidence 33333333456666666665 445555555555555555554
No 212
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.65 E-value=1.3e+02 Score=35.69 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhhhhh---HHHH-----------------HHHH---HHHHHHHHHHHHHhhhhh
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKINSK---RAEV-----------------DRAN---ERIEKLLASTEQLQLSNN 122 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K---~~Ev-----------------aQAn---E~iqKLlq~~E~LQs~nq 122 (292)
+++.-+.+|+.|+--|+..|++++-++..+- ++.. .+-| |.=.-|+..++-+-.-.+
T Consensus 1167 tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~q 1246 (1822)
T KOG4674|consen 1167 TKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQ 1246 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455566666677777766666555443322 2111 1111 111222222222223335
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+--+.|..|+.++..+++..+..+.+|.....++..|+-
T Consensus 1247 El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1247 ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777777777888888888887777764
No 213
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.49 E-value=86 Score=23.62 Aligned_cols=41 Identities=29% Similarity=0.514 Sum_probs=21.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 114 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 114 ~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++.|+.-----++.|..|+.-++ .-..+|.+|++.|+.|+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~-------~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVT-------EQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33444333333556666666665 334555666666665554
No 214
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.43 E-value=2.1e+02 Score=25.28 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=9.5
Q ss_pred hhHHhHHHHHHHHhc
Q 022776 42 DQLADFMAWFDLLRQ 56 (292)
Q Consensus 42 DDLeDFka~~~~Lt~ 56 (292)
..+.||-.+|..|+.
T Consensus 39 ~~~~efa~~~~~L~~ 53 (216)
T cd07627 39 SATEEFAETLEALSS 53 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666664
No 215
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.03 E-value=1.5e+02 Score=23.46 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 135 IAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 135 laeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
+.+-......+..+|.+|..+|..|++-+.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445677889999999988887654
No 216
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.96 E-value=81 Score=34.80 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=5.0
Q ss_pred HHHHHHhcC
Q 022776 49 AWFDLLRQK 57 (292)
Q Consensus 49 a~~~~Lt~e 57 (292)
+++.||..+
T Consensus 540 SL~~fL~~~ 548 (1201)
T PF12128_consen 540 SLLEFLRKN 548 (1201)
T ss_pred cHHHHHHhC
Confidence 455566555
No 217
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.94 E-value=36 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 022776 144 KWNTEISRLTQELELLRKS 162 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrks 162 (292)
+.+.||.+|+.|||.+++.
T Consensus 11 ~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5578999999999998765
No 218
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=45.29 E-value=28 Score=28.30 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHH
Q 022776 125 DETIAKLKTQIA 136 (292)
Q Consensus 125 DdeI~RLqaKla 136 (292)
+|.|.||+..+.
T Consensus 2 EdkI~rLE~~~~ 13 (86)
T PF12711_consen 2 EDKIKRLEKLLD 13 (86)
T ss_pred chHHHHHHHHhc
Confidence 456666666554
No 219
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.19 E-value=1.3e+02 Score=31.69 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=14.6
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhc
Q 022776 139 ETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 139 e~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
+.-.++|-+++-.+-.++|.+=-.|
T Consensus 163 ~~vr~~w~~~~~~~c~~fQ~~Ee~r 187 (611)
T KOG2398|consen 163 EKVRKDWEQEMTDLCLKFQEIEESR 187 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777666666666544333
No 220
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=45.07 E-value=65 Score=29.99 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=39.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 87 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 87 ~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
.+|..+.++..+.|.....+....+ ..++-++++|+.+-.....+|..|++||..+|..-.
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~-----------------~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKE-----------------DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444443332 455667777777777778889999999999886543
No 221
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.74 E-value=1.8e+02 Score=32.87 Aligned_cols=89 Identities=7% Similarity=-0.024 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCC--------CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHH
Q 022776 27 LREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG--------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA 98 (292)
Q Consensus 27 erE~sl~kl~lElaEDDLeDFka~~~~Lt~elken--------SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~ 98 (292)
++++..+|..+---|.++...+.-|.-+...++++ ++-.+++.+|-|..+=.+--++-+- |-+-.|..++.
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~-nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH-DKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHhHHHH
Confidence 45566666655555666666666666666666663 5666777777777777666665553 33335666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022776 99 EVDRANERIEKLLASTEQ 116 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~ 116 (292)
+..+-++.+..+-..++.
T Consensus 184 q~~tkl~e~~~en~~le~ 201 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEE 201 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655544443
No 222
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.52 E-value=63 Score=30.72 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
+|++.+..+|...+....+|..++.++..-..-. .+--..++++|+.||..-+ -+||-.+--.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~---~t~~~~ie~~l~~l~~~aG--~v~V~G~Gl~ 116 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSV---LTDDAALEDRLEKLRMLAG--SVPVTGPGLV 116 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHHHhc--cCCCcCCcEE
Confidence 6666666666666666666666666665333111 1222345668999999877 6777555433
No 223
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.33 E-value=1.9e+02 Score=29.45 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.7
Q ss_pred cCCCCCCcceec
Q 022776 224 LGGKNGDNVVVN 235 (292)
Q Consensus 224 ~~g~~~~n~~~~ 235 (292)
--||.|+||-.=
T Consensus 219 iigreGrnir~~ 230 (514)
T TIGR03319 219 IIGREGRNIRAL 230 (514)
T ss_pred ccCCCcchHHHH
Confidence 468999998543
No 224
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.08 E-value=1.2e+02 Score=30.79 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=36.2
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
+-.+|+.++-.+-.-.|.++.-+|.... +-+.++ ..+-..+-+.+...++....|..+...+..
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i-------~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEI-------ASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 3456777777777788888888876544 222333 333333334444444445556666555543
No 225
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=43.97 E-value=2.1e+02 Score=26.46 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=53.9
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---------HHhh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ---------IAQM 138 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaK---------laeM 138 (292)
|.++|-.|-=+|-.|..-++.+. +=+.+..+|.+|..+.+...+.-|.+=.... .|+.|.+.+ +..+
T Consensus 122 ~K~~l~rR~ral~~~q~A~k~L~-KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k---~El~rF~~~Rv~~fk~~lve~a 197 (219)
T cd07621 122 AKDLLYRRLRCLANYENANKNLE-KARAKNKDVHAAEAAQQEACEKFESMSESAK---QELLDFKTRRVAAFRKNLVELA 197 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhHhchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666667888888888776 4455567777777666555555555443332 344454431 2245
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 022776 139 ETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 139 e~~~Kkk~eEIs~L~~ELe~l 159 (292)
|...|-+++.|+-|+.=|..|
T Consensus 198 E~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 198 ELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 666777777777776655443
No 226
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=43.93 E-value=1.1e+02 Score=27.14 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++.++++++.+......+.+.+....-.+|+..+
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~ 184 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELN 184 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444444444444444433
No 227
>PRK14158 heat shock protein GrpE; Provisional
Probab=43.68 E-value=32 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+..|+.++.+.+....++++...++..|.++.|
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444433
No 228
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.61 E-value=2.3e+02 Score=28.68 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=66.0
Q ss_pred cchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCC-----------CccchhhhhhhhhhhhhhhhHHhhhhhHHH
Q 022776 23 VGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG-----------EPKSIEVSAFLDERAFLWNQYKVMENDLTS 91 (292)
Q Consensus 23 LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elken-----------SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~ 91 (292)
++.-..|+.-.+.-++-+.+|+..|+..+.-|..+|... ......|+.|-.+-+=+=..+..+...-.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~- 361 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE- 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc-
Confidence 455555666666677777888888888888888775431 23344455554444433333322211111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.-+....-....++.+....+++......--.++.+++.++.......+.....+.-..++++-.|-+
T Consensus 362 ---~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas 429 (522)
T PF05701_consen 362 ---KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS 429 (522)
T ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011122223334444444444444444444555555555444444444455555555555555443
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.60 E-value=1.6e+02 Score=26.19 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=6.2
Q ss_pred chhhHHHHHHHHHHHH
Q 022776 144 KWNTEISRLTQELELL 159 (292)
Q Consensus 144 kk~eEIs~L~~ELe~l 159 (292)
.+++.+.+-+|-+..|
T Consensus 146 ~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 146 IAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3333333333333333
No 230
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.43 E-value=3.7e+02 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHhhhchhhHHhHHHHHHHHhcC
Q 022776 35 LMLEYTDDQLADFMAWFDLLRQK 57 (292)
Q Consensus 35 l~lElaEDDLeDFka~~~~Lt~e 57 (292)
..++++.......+.=++.|.+.
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555
No 231
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.36 E-value=1.1e+02 Score=24.47 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
.|+.|..+...--..|..+-..+..|+..++.=|.-+.+|++|+..
T Consensus 53 ~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 53 DLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555555556666667777777777778888888887753
No 232
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.24 E-value=2e+02 Score=24.09 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=28.1
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
-+.|+|.-+.-+=.+-...+..--.++.++.+.++.+....++
T Consensus 24 l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 66 (141)
T PRK08476 24 LNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIET 66 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888776555555556666666777777776666665555
No 233
>PRK00846 hypothetical protein; Provisional
Probab=43.13 E-value=90 Score=24.88 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
+.+-++.|+.-.---++.|..|+.-+++...........+..|.+.|..+..+-
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444555555444444677777777777555555555666666666666666443
No 234
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.88 E-value=1.4e+02 Score=22.39 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 70 AFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-----LQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 70 ALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-----LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
.|....+=+++..+.++.....+=.+.+....+-......|.+-+++ |+.......+....|...+..|+.
T Consensus 11 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 11 KLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666655544444444444444444444444432 333334444444444444443333
No 235
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=42.87 E-value=1.6e+02 Score=33.03 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=42.0
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhhHHHHHHHHHH--------------hhhh
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ----LQLSNNEKDETIAKLKTQIA--------------QMET 140 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~----LQs~nqeKDdeI~RLqaKla--------------eMe~ 140 (292)
-|||.-|=.-|+ .|..++.+..+=+..|+|=+...++ +...+-+.++.+.+++.... .|+.
T Consensus 423 e~ry~klkek~t-~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 423 ENRYEKLKEKYT-ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 367776666665 3444444444444444443332222 33334444444444443222 3444
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCC
Q 022776 141 GSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 141 ~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
..-.+..|+.+|...+..++.+-..
T Consensus 502 El~~l~~e~~~lq~~~~~~~qs~~~ 526 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLAQSHNN 526 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4445566666666665555555443
No 236
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.60 E-value=2.3e+02 Score=24.76 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=43.1
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKT 133 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqa 133 (292)
-+.|+|.-+--|=..=...+..--.+++++.+.+++|+...+. |+....+.+..|..-+.
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE 81 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999876665556668888888899999999999888776 55555555555544443
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.54 E-value=1.6e+02 Score=27.06 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 139 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe 139 (292)
+--..+..+...+..|....+.|+.+..+|+.++.++.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677777778888888899999999999887443
No 238
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=42.49 E-value=8.3 Score=39.65 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhHHhHHHHHHHHhcCCCCC----------------------CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHH
Q 022776 41 DDQLADFMAWFDLLRQKPKDG----------------------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA 98 (292)
Q Consensus 41 EDDLeDFka~~~~Lt~elken----------------------SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~ 98 (292)
..|+..+++-|..|..++..- ......+..|.+...++-.+-..++..+...-.....
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~ 139 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQ 139 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888777777763320 1333444555555555555444444444433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.-....+.+.+|+...+.+.. +-.+.+..|+.++.+|+......+.++..|..+++.++
T Consensus 140 ~k~~le~~~~~L~~E~~~~~~---e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~ 198 (722)
T PF05557_consen 140 LKRKLEEEKRRLQREKEQLLE---EAREEISSLKNELSELERQAENAESQIQSLESELEELK 198 (722)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222334444333333332 22456777777777777655555555555555555554
No 239
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.06 E-value=1.5e+02 Score=26.33 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=36.5
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE-KDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqe-KDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
++...+..-+.+..+-...++.|....+.++..+.+ +..+..+.+.++. ..+..+..|+++|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~-------~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEID-------FLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 444555555556666666666666666666644432 2333333333433 556678888888874
No 240
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.86 E-value=1.8e+02 Score=30.28 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=11.7
Q ss_pred hhhhcccchhhHHHHHHHHH
Q 022776 137 QMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 137 eMe~~~Kkk~eEIs~L~~EL 156 (292)
+|+-+-++-+.||..|.+-|
T Consensus 463 qiekLK~kh~~Ei~t~kq~l 482 (488)
T PF06548_consen 463 QIEKLKRKHKMEISTMKQYL 482 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555566776666544
No 241
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=41.78 E-value=1.3e+02 Score=24.45 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=6.5
Q ss_pred HHHHHHhhcCCCCccccc
Q 022776 155 ELELLRKSRTASDTPVLN 172 (292)
Q Consensus 155 ELe~lrksr~a~~tpvl~ 172 (292)
-++..-+.++ ++=||+
T Consensus 121 ~v~~~a~~~g--~~~Vl~ 136 (158)
T PF03938_consen 121 AVEEYAKENG--YDLVLD 136 (158)
T ss_dssp HHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHcC--CeEEEe
Confidence 3344444444 444443
No 242
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=41.61 E-value=2.3e+02 Score=24.33 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=38.8
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
+-|+|.-+.-+=.+-...+.+.-.++.++.+.++.+++..++ |+....+-.+.+..-+.+.
T Consensus 36 ~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 36 KKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888776554555557777777777777777777776655 5555555555555554443
No 243
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.41 E-value=1.1e+02 Score=26.42 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHHHHh
Q 022776 144 KWNTEISRLTQELELLRK 161 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrk 161 (292)
+.++||.+.+.+++.|++
T Consensus 165 ~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 165 KLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666665654
No 244
>PRK14146 heat shock protein GrpE; Provisional
Probab=41.39 E-value=41 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 121 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 121 nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
..+-.+++..|++++.+++....++++...++..+.+++|+
T Consensus 49 ~~~~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rk 89 (215)
T PRK14146 49 AVEGAETETSLQKELDNAKKEIESLKDSWARERAEFQNFKR 89 (215)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555666777777777777665
No 245
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.11 E-value=1.4e+02 Score=30.87 Aligned_cols=83 Identities=25% Similarity=0.329 Sum_probs=45.4
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-----LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 154 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-----LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ 154 (292)
.|+|-|+.++..+++ .+....+-||..++=.+++++ ++...++-..++..|+.+.+ .....|..|.+
T Consensus 66 a~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~-------~~~~~l~~l~~ 137 (472)
T TIGR03752 66 AEVKELRKRLAKLIS-ENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ-------QLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 466677777664433 233344445555443333332 44445555556666666665 44566677777
Q ss_pred HHHHHHhh--cCCCCccc
Q 022776 155 ELELLRKS--RTASDTPV 170 (292)
Q Consensus 155 ELe~lrks--r~a~~tpv 170 (292)
.|+.+-.. ....+.|+
T Consensus 138 ~l~~~~~~~~~~~~d~P~ 155 (472)
T TIGR03752 138 RLAGVLTGPSGGGSDLPV 155 (472)
T ss_pred HHhhccccCCCCCCCCCc
Confidence 77665443 44456664
No 246
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=41.03 E-value=2.5e+02 Score=27.77 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIAQMETGSKK 144 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKlaeMe~~~Kk 144 (292)
.||.-|.-|-|-+-||-.-.|+-|..-++. +..-|+..++-+.-+|+ |--..-.+...+.-|.++-+-+-+...+
T Consensus 6 ~eia~LrlEidtik~q~qekE~ky~ediei----~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 6 DEIAMLRLEIDTIKNQNQEKEKKYLEDIEI----LKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 478888889999999999999999843221 11112222332222222 3334444556666677766666666667
Q ss_pred hhhHHHHHHHHHHHHHhhc
Q 022776 145 WNTEISRLTQELELLRKSR 163 (292)
Q Consensus 145 k~eEIs~L~~ELe~lrksr 163 (292)
-+..-.+|+.|+|+.|+.=
T Consensus 82 EKq~kerLEtEiES~rsRL 100 (305)
T PF14915_consen 82 EKQNKERLETEIESYRSRL 100 (305)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7888899999999998753
No 247
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=40.76 E-value=2e+02 Score=23.34 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+.....+.+..+....-++...|+++--+|..|..+...... --+...+|.+++.+|+.-|..
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555566666777777777777666553333 234556777777777766554
No 248
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.51 E-value=6.6e+02 Score=29.41 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 129 AKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 129 ~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
....+++.+++....+...+++.++..++.+++.
T Consensus 445 enF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 445 EEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555443
No 249
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=40.51 E-value=89 Score=26.12 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=16.0
Q ss_pred hhhhhhhhHHhhhhhHHH
Q 022776 74 ERAFLWNQYKVMENDLTS 91 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~ 91 (292)
.-+|+|+|++-+-+|++-
T Consensus 30 ~y~fi~drlRsiRqDl~v 47 (204)
T PF03399_consen 30 DYNFIWDRLRSIRQDLTV 47 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHhhHHH
Confidence 448999999999999986
No 250
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.32 E-value=1.7e+02 Score=30.58 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=82.0
Q ss_pred hhchhhHHhHHHHHHHHhcCCCC---C----------C------ccchhhhhhhhhhhhhhhhHHhhh----hhHHHhh-
Q 022776 38 EYTDDQLADFMAWFDLLRQKPKD---G----------E------PKSIEVSAFLDERAFLWNQYKVME----NDLTSKI- 93 (292)
Q Consensus 38 ElaEDDLeDFka~~~~Lt~elke---n----------S------eK~kEVsALLaEKdFVWNQ~k~ME----~Dyt~~L- 93 (292)
+--..||++|+.--..+-.+... - . ---++|.||..||.-.---|.+=| +++.++|
T Consensus 60 kvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~ 139 (552)
T KOG2129|consen 60 KVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLK 139 (552)
T ss_pred hhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHH
Confidence 33456778887766666555111 0 0 112567777777776666666655 3444443
Q ss_pred --hhhHHHHHHHHHHH-----HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh--------hcccchhhHHHHHHHHHHH
Q 022776 94 --NSKRAEVDRANERI-----EKLLASTEQLQLSNNEKDETIAKLKTQIAQME--------TGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 94 --K~K~~EvaQAnE~i-----qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe--------~~~Kkk~eEIs~L~~ELe~ 158 (292)
+-++-+.+|--|.- +||...++.||..-..|...+..|..++.+|| +++...=.+|.+|++|-..
T Consensus 140 qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~ 219 (552)
T KOG2129|consen 140 QLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRY 219 (552)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555443 47888888888777777777777777776665 4555555678888888766
Q ss_pred HHhhcCCCCcccccccc
Q 022776 159 LRKSRTASDTPVLNRCT 175 (292)
Q Consensus 159 lrksr~a~~tpvl~~ct 175 (292)
|-+-- +-||+.+-+
T Consensus 220 Lq~Kl---Dqpvs~p~~ 233 (552)
T KOG2129|consen 220 LQKKL---DQPVSTPSL 233 (552)
T ss_pred HHHHh---cCcccCCCc
Confidence 65443 455554443
No 251
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=40.21 E-value=4.6e+02 Score=29.27 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 154 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ 154 (292)
++.-+|.|.+|+...+.|.+.-..|.+.=.-++.-+..|.+..+.-++..+++..
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~ 544 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRA 544 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6677778888888877777777766655444455555566666666666666443
No 252
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=40.19 E-value=3e+02 Score=25.42 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=21.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 022776 117 LQLSNNEKDETIAKLKTQIAQMETGSKKWN 146 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~ 146 (292)
|.....+||.+|.+++.++..++.-.++..
T Consensus 98 lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 98 LVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999999888876666544443
No 253
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.14 E-value=2.4e+02 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=11.3
Q ss_pred hhHHhHHHHHHHHhc
Q 022776 42 DQLADFMAWFDLLRQ 56 (292)
Q Consensus 42 DDLeDFka~~~~Lt~ 56 (292)
.-+.||-.++..|+.
T Consensus 57 ~~~~efa~s~~~L~~ 71 (234)
T cd07664 57 ANTAAFAKSAAMLGN 71 (234)
T ss_pred HHHHHHHHHHHHHHc
Confidence 346788888888877
No 254
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.12 E-value=36 Score=30.81 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
|.+.++.|+....+-.+...|++|+..
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfe 70 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQ 70 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444566777777664
No 255
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=39.93 E-value=1.1e+02 Score=27.89 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 89 LTSKINSKRAEVDRANERIEKLLASTEQ----LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 89 yt~~LK~K~~EvaQAnE~iqKLlq~~E~----LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+-.+|+.-+.|--||.+....|-...-. ||+...+++.....+-..-.++.+-.--++.+-+.|+..|+.||+-
T Consensus 9 LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888887776554433 5544444443322222112233333347788999999999999963
No 256
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.93 E-value=1.4e+02 Score=27.50 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+.=+.+|-+.++.|....+.++.+.+.=++...+|+..+..+ ...|..+++..+.+
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L-------e~Ki~e~~~~~~~l 139 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL-------EQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 444566777788888888888877777777777777777744 44555555555544
No 257
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.70 E-value=2.4e+02 Score=24.05 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=37.4
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
-+.|+|.-+.-+=..-...+.+.-.++..+.+.++.++...++ |+....+-.+.|...+.+.
T Consensus 33 L~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea 95 (173)
T PRK13460 33 LKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDA 95 (173)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888765444444557777777777777776666665555 5555555555555444433
No 258
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.65 E-value=76 Score=33.47 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=35.9
Q ss_pred hhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 022776 79 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDE 126 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDd 126 (292)
-||++-.=..|.++|+.-..|++.-.|.|+-|+++...|.....++|=
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 355555556788888888888888888888888888887755544443
No 259
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=39.53 E-value=42 Score=32.57 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 146 NTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 146 ~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
.+||.+|+.+++.+++.--+.+||
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~~l~~ 57 (319)
T PRK05724 34 SEEIERLEKKLEELTKKIYSNLTP 57 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 455666666666655554444454
No 260
>PRK04406 hypothetical protein; Provisional
Probab=39.45 E-value=1.3e+02 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+.+-+..|+.-.--=++.|..|..-++ .-..+|..|.+.|..|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~-------~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALS-------QQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555555444444667777777776 4445666666666666
No 261
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=39.44 E-value=2.4e+02 Score=24.03 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 022776 69 SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 144 (292)
Q Consensus 69 sALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kk 144 (292)
-+|.+-+.=.-|++..|+...-+ .|.-..|.++=++. |...+..|+..+...-.-|..|++++.+.......
T Consensus 5 ~~l~as~~el~n~La~Le~slE~-~K~S~~eL~kqkd~---L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLED-EKTSQGELAKQKDQ---LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HHhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788899888887763 34434444333333 66667777777777777788888887765554443
No 262
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=39.29 E-value=2.8e+02 Score=24.80 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=6.7
Q ss_pred HHhHHHHHHHHh
Q 022776 44 LADFMAWFDLLR 55 (292)
Q Consensus 44 LeDFka~~~~Lt 55 (292)
+.+|-.+|..|+
T Consensus 49 ~~~f~~s~~~L~ 60 (224)
T cd07623 49 TGSFAKSAAMLS 60 (224)
T ss_pred HHHHHHHHHHHH
Confidence 445555555555
No 263
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=39.14 E-value=2.1e+02 Score=23.26 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.2
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
+-|+|.-+.-+=.+-...+.+.-.++..+.+.++.++...+. |+....+-.+.|...+.+.
T Consensus 13 ~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a 74 (147)
T TIGR01144 13 MKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRG 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888776665556667777777777777777777666555 5555555555554444433
No 264
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=39.08 E-value=1.3e+02 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 137 QMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 137 eMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+|+.++.+-+..+..+...|+.|.+.
T Consensus 46 el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 46 ELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666677777777666
No 265
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.00 E-value=2.7e+02 Score=30.52 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=46.9
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 86 ENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS---NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 86 E~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~---nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|.-++-.|...+...-.|.-.-.|-+..+.++|.. ..++..+..||+.+.. ++++.+|.+.|+.+-+-
T Consensus 584 Esrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~---------~~e~~rl~~rlqelerd 654 (739)
T PF07111_consen 584 ESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEAR---------KEEGQRLTQRLQELERD 654 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 33444444444444445555555667777777743 3467788889998875 89999999999887766
Q ss_pred cC
Q 022776 163 RT 164 (292)
Q Consensus 163 r~ 164 (292)
++
T Consensus 655 kN 656 (739)
T PF07111_consen 655 KN 656 (739)
T ss_pred hh
Confidence 55
No 266
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=38.77 E-value=76 Score=29.23 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHH--------HHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLK--------TQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLq--------aKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
|.+...+|+...+++-+++.+|. ..+.+|+.+.++|..--+..-.+|+.
T Consensus 136 l~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~ 192 (221)
T PF10376_consen 136 LEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQS 192 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555667776664 35668888888888877777777765
No 267
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.73 E-value=75 Score=31.23 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.|--+|+.|.+.++.|.-..+-|-=.|.-|++-+.+--.-+.+.+.+++-|.+|.+.|..+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 4666788888888888888877777777777766655555556666677777666665544
No 268
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.54 E-value=1.7e+02 Score=31.30 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=8.9
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 022776 119 LSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 119 s~nqeKDdeI~RLqaKla 136 (292)
...++++..+.+++.++.
T Consensus 559 ~l~~~~~~~~~~~~~~a~ 576 (782)
T PRK00409 559 KLQEEEDKLLEEAEKEAQ 576 (782)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555554443
No 269
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=38.36 E-value=41 Score=32.77 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=11.1
Q ss_pred cccccccccccCcccc
Q 022776 258 RKAVDVIPILDTPKLF 273 (292)
Q Consensus 258 rk~~~~~~~~etpklf 273 (292)
+-.+++|.+.|||=-|
T Consensus 152 ~f~lPIItlvDTpGA~ 167 (322)
T CHL00198 152 KFGLPILTFIDTPGAW 167 (322)
T ss_pred HcCCCEEEEEeCCCcC
Confidence 3467778888888654
No 270
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.16 E-value=50 Score=29.51 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022776 99 EVDRANERIEKLLAST 114 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~ 114 (292)
-.-||.|...=|...+
T Consensus 8 klN~AIERnalLE~EL 23 (166)
T PF04880_consen 8 KLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3447777777666655
No 271
>PRK10698 phage shock protein PspA; Provisional
Probab=38.01 E-value=3.1e+02 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 124 KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 124 KDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
....|..|+..+......+.+....+.+|+..|+.+|.-|.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666667777777777777777776554
No 272
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=37.56 E-value=2.9e+02 Score=27.90 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=63.0
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---------hHHHHHHHHHHhh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKD---------ETIAKLKTQIAQM 138 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKD---------deI~RLqaKlaeM 138 (292)
-.+|+.+-+-+-||++ |+--.+.+.=-+.||..|.|..+|-...+-.-+..|..=| .-|+.|++++...
T Consensus 158 aqailkqse~lIN~Ls--~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~i 235 (372)
T COG3524 158 AQAILKQSEKLINQLS--ERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVI 235 (372)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHH
Confidence 3688899999999987 4555667777788999999999988887776554444322 3355555555444
Q ss_pred hh-------cccchhhHHHHHHHHHHHHHhh
Q 022776 139 ET-------GSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 139 e~-------~~Kkk~eEIs~L~~ELe~lrks 162 (292)
++ -.-..+-+|--|..+.|+|||-
T Consensus 236 qaqL~tvks~m~~~nPqi~~LkarieSlrkq 266 (372)
T COG3524 236 QAQLDTVKSVMNPENPQIPGLKARIESLRKQ 266 (372)
T ss_pred HHHHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 43 3334455667777777777774
No 273
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.36 E-value=3.2e+02 Score=26.68 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
..|+..+++||+.-.+=.+.|-+|+-+.+.++...++.-.+.++|++.+..|
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3466777777777777777777777766666555555555555555544443
No 274
>PRK12704 phosphodiesterase; Provisional
Probab=37.16 E-value=2.4e+02 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=13.8
Q ss_pred ccccccccccccccCCCCcccccccccccccccc
Q 022776 170 VLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLR 203 (292)
Q Consensus 170 vl~~ct~~~~~~~s~~g~~~~~~~~~~~~~~~~~ 203 (292)
.+.||. +..++...+||-+-. ...+|||+-
T Consensus 197 a~qr~a---~~~~~e~~~~~v~lp-~d~mkgrii 226 (520)
T PRK12704 197 AIQRCA---ADHVAETTVSVVNLP-NDEMKGRII 226 (520)
T ss_pred HHHhhc---chhhhhhceeeeecC-Cchhhccee
Confidence 344444 344444445444332 234566653
No 275
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=36.71 E-value=3.4e+02 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHH
Q 022776 68 VSAFLDERAFLWNQYKVMENDLT 90 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt 90 (292)
|.+++..|-=+|.+|...++++.
T Consensus 121 vK~~f~~R~k~~~~~~~a~~~L~ 143 (234)
T cd07664 121 VKGVFDQRMKCWQKWQDAQVTLQ 143 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777888888777765
No 276
>PRK14163 heat shock protein GrpE; Provisional
Probab=36.66 E-value=40 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
|.+.++.|+....+.-+.+.|+++++.
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfe 71 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQ 71 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444466667766553
No 277
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.40 E-value=2.8e+02 Score=28.12 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
..+.+..|...++.++....++....+.++.++.++....+...++...+...|+.||+.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444444444455555555555555555555555555555555543
No 278
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.34 E-value=1.9e+02 Score=23.06 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHH
Q 022776 129 AKLKTQIAQMETGSKKWNTEISRLT 153 (292)
Q Consensus 129 ~RLqaKlaeMe~~~Kkk~eEIs~L~ 153 (292)
..++.+++.|+.+.....+++-...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ 59 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAE 59 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHH
Confidence 4455555544444444444333333
No 279
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=36.34 E-value=2.3e+02 Score=25.54 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.3
Q ss_pred cccccc
Q 022776 194 STAGIK 199 (292)
Q Consensus 194 ~~~~~~ 199 (292)
...|++
T Consensus 210 P~~G~V 215 (334)
T TIGR00998 210 PFDGYV 215 (334)
T ss_pred CCCcEE
Confidence 333333
No 280
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.33 E-value=2.1e+02 Score=22.36 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++-+..|+.++..++...+++.++|..+.++++.++.
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666553
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.19 E-value=2.3e+02 Score=27.09 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
--+|.+-...+. .+.++|.+|++|++.|+..+.
T Consensus 192 ~kei~~~re~i~-------el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 192 QKEIVQFREEID-------ELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 344554444554 668899999999999998876
No 282
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=36.09 E-value=1.4e+02 Score=32.33 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEK-------DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeK-------DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+.|+++.+.++++|++.++.++.--.+. .+.|.+-+.|++ +..++|..|...|+.|+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~-------~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKID-------ELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 56888888888899998888877433222 256666677777 44556666666666655
No 283
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.04 E-value=5.5e+02 Score=27.12 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=16.7
Q ss_pred ccccCCCCccccccccccccccc
Q 022776 180 ATTSNAGDSVQNRSSTAGIKGRL 202 (292)
Q Consensus 180 ~~~s~~g~~~~~~~~~~~~~~~~ 202 (292)
..++..|+-||++.++.||..++
T Consensus 374 s~~~SPg~~vq~~~~t~g~~r~~ 396 (552)
T KOG2129|consen 374 SSTSSPGVRVQDQQSTSGYRRQL 396 (552)
T ss_pred cccCCCceeeccccccccccccC
Confidence 45666788888888888877444
No 284
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=35.97 E-value=1.2e+02 Score=25.39 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=34.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
.++..-..+|+..+.++..-+..+.+.+..++ .++|.+-+.||+|
T Consensus 63 ~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~--~~KI~K~~~KL~e 107 (115)
T PF06476_consen 63 GLKAERQQKIAEKQQKVAEREAELKEAQAKGD--SDKIAKRQKKLAE 107 (115)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 35666677788888888888888888776655 5889998888874
No 285
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.93 E-value=2.3e+02 Score=22.83 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaK 134 (292)
+-|+|--+.-|=.+-...+..--.++..+.+.++.++...++ |+....+-.+.+...+.+
T Consensus 23 ~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~ 83 (140)
T PRK07353 23 NALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAE 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676554333333445555556666666655555544443 555444444444444443
No 286
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=35.87 E-value=2.1e+02 Score=22.32 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=20.8
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
.-|+|.-+.-+=.+=.+.+.+.-.+++++.+.++.+....+.
T Consensus 17 ~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~ 58 (132)
T PF00430_consen 17 NKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEE 58 (132)
T ss_dssp HHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666554433333345555555566666666555555444
No 287
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=35.86 E-value=2.2e+02 Score=23.77 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCccccccccccccccccCCCC
Q 022776 144 KWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGD 187 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~~~~~~~s~~g~ 187 (292)
..+.+|.+|.+.|-.=++.= + |--.|.. .+..++.+|+
T Consensus 46 ~Ak~e~~~Lr~dl~aG~~RL--~---v~a~C~~-~~~~~~a~~~ 83 (125)
T PF03245_consen 46 DAKAEIDRLRADLAAGNKRL--R---VKATCPA-VPETTSAGGV 83 (125)
T ss_pred HHHhhHHHHHHHHHcCCceE--E---EeccCCC-CCCCCCCCCC
Confidence 67888899998886542211 1 3337777 4444444444
No 288
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=35.73 E-value=1.1e+02 Score=28.06 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhhhhHHHHH---HHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 102 RANERIEKLLASTEQLQLS--NNEKDETIAKL---KTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~--nqeKDdeI~RL---qaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.-+++...|+..+...... .++-+..++.| +.|..|||. .-+|.+|+.+|+..|+.
T Consensus 128 ~V~~At~~LVaaak~~~~~~~e~~~~~d~s~l~~~~~k~~emE~-----Qv~IL~lE~~L~~ar~~ 188 (200)
T smart00307 128 AVTNATANLVAAVKSGMIFDEEQEEEEDFSKLSLHEGKTQEMEQ-----QVEILKLENELEAARKK 188 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchhccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3344556666666654432 11112223433 668888876 56789999999988763
No 289
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.67 E-value=49 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
|.+.++.|+....+..+.+.|++|++.
T Consensus 72 l~~el~~l~~e~~elkd~~lR~~Adfe 98 (238)
T PRK14143 72 LEQELESLKQELEELNSQYMRIAADFD 98 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444333334455667766653
No 290
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.58 E-value=83 Score=32.44 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
..+|..|+.++.+|.....+...+|+.|+.|++.|+.-
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666667777777777777777655
No 291
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.36 E-value=2.1e+02 Score=22.23 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKT---QIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa---KlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.-+.-.+++..++.|+..-+.-..+|+.+.. ...++-..++..+++|..|+.++..+-.
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666655666666654 3555666666777777777777666543
No 292
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=35.33 E-value=52 Score=34.99 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=11.6
Q ss_pred HhhhhhhhhhHHHHHHHHHH
Q 022776 117 LQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKla 136 (292)
|+..+++|++|+.++.....
T Consensus 6 L~~Lq~ek~~E~~~l~~~~~ 25 (654)
T PF09798_consen 6 LELLQQEKQKERQALKSSVE 25 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666655443
No 293
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.04 E-value=1.2e+02 Score=32.69 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc----------ccchhhHHHHHHHHHHHHHhhc
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG----------SKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~----------~Kkk~eEIs~L~~ELe~lrksr 163 (292)
...-.+.+++|...+..|+....+...+|..|++++.+|-.. ....+.+|.+|+.+|+.-++-+
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666666666678888888887755332 2335677888888887765544
No 294
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.96 E-value=2.1e+02 Score=24.02 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=17.7
Q ss_pred hhhHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 022776 86 ENDLTSKINSKRAEVD---RANERIEKLLASTEQLQLSN 121 (292)
Q Consensus 86 E~Dyt~~LK~K~~Eva---QAnE~iqKLlq~~E~LQs~n 121 (292)
+-||..+++.+.+.-. -+.+.++.|+..++..+...
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666644433 33344445554444444333
No 295
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.59 E-value=1.9e+02 Score=22.02 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=35.6
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
+....++.-+.++..-...+..+..+.+.+..-.++|-+.+..+=..+.+.+.
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455666666777777777777777777777777777777776666654443
No 296
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=34.48 E-value=3.4e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=11.7
Q ss_pred HhHHHHHHHHhcCCCC
Q 022776 45 ADFMAWFDLLRQKPKD 60 (292)
Q Consensus 45 eDFka~~~~Lt~elke 60 (292)
++|+.+++++...+.+
T Consensus 6 ~e~~~FL~W~c~~V~~ 21 (256)
T PF14932_consen 6 EEFESFLDWFCSNVNE 21 (256)
T ss_pred ccHHHHHHHHHccCCh
Confidence 6777777777777666
No 297
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.41 E-value=2.9e+02 Score=23.49 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=29.2
Q ss_pred hhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 77 FLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 77 FVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
|+|.=..-+=.+-...+.+.-.++.++.+.+++++...+. |+....+..+.|...+.+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a 98 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARA 98 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544433344445555555555555555555544433 4555555555555444433
No 298
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.31 E-value=2.1e+02 Score=30.60 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
.|...+.++++..+.++++++.++.
T Consensus 519 ~L~~~~~~~e~~~~~~~~~~~e~~~ 543 (771)
T TIGR01069 519 KLSALEKELEQKNEHLEKLLKEQEK 543 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.28 E-value=3.4e+02 Score=24.17 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
...+.+|+..+..+...+.+.+..|..|+.+++.+|.-+.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777888888888888888877665
No 300
>PRK14145 heat shock protein GrpE; Provisional
Probab=34.27 E-value=58 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
..|.+.++.|+....+..+...|++|+.
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEf 75 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEF 75 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555544
No 301
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.18 E-value=2e+02 Score=26.23 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccc
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPV 170 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpv 170 (292)
..+.+|.++.++++ .++.++..+++++..++.-.....++.
T Consensus 132 ~~~~~~~~~~~~i~-------~l~~~~~~~~~~~~~~~~~~~~E~~g~ 172 (301)
T PF14362_consen 132 SFDAQIARLDAEIA-------ALQAEIDQLEKEIDRAQQEAQCEIFGT 172 (301)
T ss_pred HhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44566666666665 667777777777777776666555554
No 302
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.18 E-value=3.6e+02 Score=32.42 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=76.8
Q ss_pred HHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhh--hhH--HhhhhhHHHhhhhhHHHHHHHHH
Q 022776 30 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLW--NQY--KVMENDLTSKINSKRAEVDRANE 105 (292)
Q Consensus 30 ~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVW--NQ~--k~ME~Dyt~~LK~K~~EvaQAnE 105 (292)
-+-+..++|...++|+--..-+..|-.+|+.-..+.+|+.+-+.+.-|-= -|| ..||+.+..+... +.=
T Consensus 124 kr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~-------~~w 196 (1822)
T KOG4674|consen 124 KRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESE-------NKW 196 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHH
Confidence 34455567777777777777777777766665677778777777765532 222 2345554432222 222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
==..|..-++.|.+..++++..|..|+.+|..|........+-+.-|.+....|=
T Consensus 197 L~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs 251 (1822)
T KOG4674|consen 197 LSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELS 251 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245777788888888888888888888887666655555555555544444443
No 303
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=33.57 E-value=47 Score=27.89 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.5
Q ss_pred HHHHHHHhhhchhhHHhHH
Q 022776 30 ASLLKLMLEYTDDQLADFM 48 (292)
Q Consensus 30 ~sl~kl~lElaEDDLeDFk 48 (292)
++--+++.+-+++||.||+
T Consensus 78 ~~~~~~~~~~~~~d~~~f~ 96 (97)
T PRK09778 78 RRAEKYLNDMTDDDFNDFK 96 (97)
T ss_pred HHHHHHHHHhhhhhhhhhc
Confidence 4445778899999999996
No 304
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.45 E-value=1.3e+02 Score=28.33 Aligned_cols=56 Identities=27% Similarity=0.301 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
.|.-||+.=.=++|+|=+- -|.|+|..|++.-+.|+.+-+....+|..-++.|..|
T Consensus 158 dvevLL~~ae~L~~vYP~~----------------ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 158 DVEVLLRGAEKLCNVYPLP----------------GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred CHHHHHHHHHHHHHhCCCh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666543 3444445555544444444444444444444444433
No 305
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.26 E-value=80 Score=23.78 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+++=+...+++|....-.-..+|.+|+..+.
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445554444444555666655554
No 306
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=32.92 E-value=3.4e+02 Score=23.79 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
..++..++.++. .+..++..++.+|+.++..
T Consensus 101 ~~~~~~~~~~~~-------~~~~~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 101 QADLDDAKAAVE-------AAQADLEAAKASLASAQLN 131 (322)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 445555565555 3344555566666666543
No 307
>PRK14148 heat shock protein GrpE; Provisional
Probab=32.89 E-value=60 Score=29.46 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q 022776 126 ETIAKLKTQI 135 (292)
Q Consensus 126 deI~RLqaKl 135 (292)
+...|++|+.
T Consensus 61 d~~lR~~Ae~ 70 (195)
T PRK14148 61 DEALRAKAEM 70 (195)
T ss_pred HHHHHHHHHH
Confidence 4444554444
No 308
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.81 E-value=3.3e+02 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=15.6
Q ss_pred hhhhhhhhhhhhHHhhhhhHHHhhhhh
Q 022776 70 AFLDERAFLWNQYKVMENDLTSKINSK 96 (292)
Q Consensus 70 ALLaEKdFVWNQ~k~ME~Dyt~~LK~K 96 (292)
+--+++|.+=+..-.||.|+-..=.++
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~ 40 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENK 40 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhH
Confidence 334466666666666776665443333
No 309
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.79 E-value=4.1e+02 Score=24.71 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHhcC
Q 022776 44 LADFMAWFDLLRQK 57 (292)
Q Consensus 44 LeDFka~~~~Lt~e 57 (292)
+.||-..+..|+.-
T Consensus 59 ~~eFa~s~~~L~~~ 72 (234)
T cd07665 59 TALFAKSLAMLGSS 72 (234)
T ss_pred HHHHHHHHHHHHhc
Confidence 56676666666543
No 310
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.54 E-value=5.8e+02 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022776 95 SKRAEVDRANERIEKLLAS 113 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~ 113 (292)
.++-.+.++...++.|.+.
T Consensus 313 ~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 313 ANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 311
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.28 E-value=2.4e+02 Score=27.65 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
||..|..|...+..-...+-.--++|.+|.++++.++.-.+..=.|...|.+-|...+
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444333333333333456777777666666555555555555555555443
No 312
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.22 E-value=2.6e+02 Score=27.60 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQ-LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQ-s~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
-..|+++.+.|+.=+..+.++- ..-+|-++.|..|..-+...-....+.+.||..++++|=+++
T Consensus 131 ~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~ 195 (300)
T KOG2629|consen 131 FDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMS 195 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence 3445555555554444443322 223367777777777766555566666777777776665544
No 313
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=32.02 E-value=1.5e+02 Score=24.99 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=40.2
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
.=++++.+.|=.|... ..-.|..|+..+=.+.++..+=...|.+|+.++.+.+....++=.|-..|-..
T Consensus 65 ~~~~~~~~elA~dIi~-----------kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 65 EEFEENIKELATDIIR-----------KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-----------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666555542 22334556555555555555556777788777776666655555555555444
Q ss_pred HHH
Q 022776 156 LEL 158 (292)
Q Consensus 156 Le~ 158 (292)
++.
T Consensus 134 v~~ 136 (144)
T PF11221_consen 134 VQE 136 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 314
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=2.7e+02 Score=31.38 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 114 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 114 ~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
..+|...--+|+..+.+|++++.+++.++..+.++|.++...|..||
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44566666778888888888888888888888777777665555544
No 315
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.85 E-value=3e+02 Score=22.92 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=36.7
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
+-|+|.=+.-|=.+-...+...-.+++++.+.++.++...+. |.....+-...|...+.+.
T Consensus 23 ~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a 84 (159)
T PRK13461 23 KHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKA 84 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787766555555556777667777777777776665555 4444444455555444433
No 316
>PRK04325 hypothetical protein; Provisional
Probab=31.78 E-value=1.8e+02 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.|..|..-++ +-..+|.+|.+.|..|
T Consensus 22 E~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 22 EDLIDGLNATVA-------RQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 555555555555 3345566666666655
No 317
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.74 E-value=1.2e+02 Score=29.36 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 022776 102 RANERIEKL 110 (292)
Q Consensus 102 QAnE~iqKL 110 (292)
.-+|.+..|
T Consensus 167 e~~erlk~l 175 (290)
T COG4026 167 EVQERLKRL 175 (290)
T ss_pred HHHHHHHHH
Confidence 333333333
No 318
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.51 E-value=1.7e+02 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 130 KLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 130 RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.|.+++.++....++..+++..+++++..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555444333344444444444444443
No 319
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.41 E-value=4e+02 Score=24.11 Aligned_cols=86 Identities=24% Similarity=0.321 Sum_probs=45.7
Q ss_pred hhhhhhHHhhhhh-----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hhhHHHHHHHHHHhhh
Q 022776 76 AFLWNQYKVMEND-----LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE-----------KDETIAKLKTQIAQME 139 (292)
Q Consensus 76 dFVWNQ~k~ME~D-----yt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqe-----------KDdeI~RLqaKlaeMe 139 (292)
-..|.+-++-+-. ....+..-+.|+......++.|...++.|+..+.. .+.+...+++.++.++
T Consensus 189 ~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le 268 (312)
T PF00038_consen 189 LEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELE 268 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence 4456666643311 22334444455555555555555555544433333 3334444455666666
Q ss_pred hcccchhhHHHHHHHHHHHHHh
Q 022776 140 TGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
....+...+|.....+.+.|-.
T Consensus 269 ~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 269 EELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777776643
No 320
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=31.32 E-value=7e+02 Score=26.93 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHhh---hhhhcchhhhHHHHHHH
Q 022776 2 KSEIVAQELIHLLDAAK---SDMVVGLKLREASLLKL 35 (292)
Q Consensus 2 ~~~~~~~E~~~~lEaAk---~dl~LGlKerE~sl~kl 35 (292)
+-+++++++.+.|+.-+ .....+++....+++.|
T Consensus 338 n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~ 374 (607)
T KOG0240|consen 338 NLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRW 374 (607)
T ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 45677888888877543 22333344444444433
No 321
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.95 E-value=2.1e+02 Score=20.71 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=5.1
Q ss_pred chhhHHHHHHHH
Q 022776 144 KWNTEISRLTQE 155 (292)
Q Consensus 144 kk~eEIs~L~~E 155 (292)
.+..++..|..+
T Consensus 51 ~L~~~~~~L~~e 62 (64)
T PF00170_consen 51 QLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334444444443
No 322
>COG5293 Predicted ATPase [General function prediction only]
Probab=30.94 E-value=2.4e+02 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 131 LKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 131 LqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
|+.++++++.+.|+.+.++..|..++++
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae 367 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAE 367 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766666655543
No 323
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.90 E-value=5.4e+02 Score=25.88 Aligned_cols=6 Identities=0% Similarity=-0.130 Sum_probs=2.6
Q ss_pred cccccc
Q 022776 170 VLNRCT 175 (292)
Q Consensus 170 vl~~ct 175 (292)
.+.-|-
T Consensus 341 l~~~el 346 (511)
T PF09787_consen 341 LYYQEL 346 (511)
T ss_pred HHHHHH
Confidence 444444
No 324
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.84 E-value=1.5e+02 Score=25.97 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHhhcC
Q 022776 147 TEISRLTQELELLRKSRT 164 (292)
Q Consensus 147 eEIs~L~~ELe~lrksr~ 164 (292)
.||+.|.++|...|-.+.
T Consensus 96 kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 96 KEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666665555444
No 325
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.72 E-value=4.7e+02 Score=25.23 Aligned_cols=119 Identities=15% Similarity=0.293 Sum_probs=61.5
Q ss_pred hhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q 022776 38 EYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKIN---SKRAEVDRANERIEKLLAST 114 (292)
Q Consensus 38 ElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK---~K~~EvaQAnE~iqKLlq~~ 114 (292)
+..+|||.|--.-+++|-. |+..+. ++|-.--.+|...|| +.+..+......-++|...+
T Consensus 92 ~~edddl~DIsDklgvLl~----------e~ge~e-------~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I 154 (271)
T PF13805_consen 92 EQEDDDLSDISDKLGVLLY----------EIGELE-------DQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEI 154 (271)
T ss_dssp TTS-HHHHHHHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 4456777776666666543 333332 233333333333333 44555666666666666666
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 115 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 115 E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
..|..-. -....|..|+.+|..+|.+.--...+++-++++ .+|..=+.++--+.-+|-+
T Consensus 155 ~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~--~lKEa~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 155 AKLKYKD-PQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ--KLKEAYSLKFDALIERAEK 213 (271)
T ss_dssp HHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 5554322 224578888888886666555555555555554 3444444444444444443
No 326
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.66 E-value=2.2e+02 Score=20.93 Aligned_cols=55 Identities=13% Similarity=0.307 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKD-ETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKD-deI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
.++..+..+...+......+.+|+...+.=+ ..-..++.++. .-+.++..|+.+|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~-------~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLR-------SYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 3444444455555555555555554444333 33344444444 4444555555544
No 327
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.63 E-value=76 Score=30.81 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=14.8
Q ss_pred ccccccccc---cccccccccccCcccc
Q 022776 249 SEKGTRSSK---RKAVDVIPILDTPKLF 273 (292)
Q Consensus 249 ~~k~~r~~k---rk~~~~~~~~etpklf 273 (292)
..|-.|-.+ +-.+++|.+.+||=-+
T Consensus 137 ~rKa~R~m~lA~~f~iPvVtlvDTpGa~ 164 (316)
T TIGR00513 137 YRKALRLMKMAERFKMPIITFIDTPGAY 164 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 344444443 3367777888888654
No 328
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.63 E-value=3.1e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=20.5
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 131 LKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 131 LqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
-+.++.+++...+...+|+..|..+|+..|+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777777766654
No 329
>PRK00295 hypothetical protein; Provisional
Probab=30.47 E-value=91 Score=23.71 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.|..|..-++ +-..+|.+|.+.|..|
T Consensus 18 E~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 18 DDTIQALNDVLV-------EQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555555444 2333445555555544
No 330
>PRK14144 heat shock protein GrpE; Provisional
Probab=30.39 E-value=62 Score=29.60 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=4.0
Q ss_pred hhhHHh
Q 022776 79 WNQYKV 84 (292)
Q Consensus 79 WNQ~k~ 84 (292)
|.||+-
T Consensus 9 ~~~~~~ 14 (199)
T PRK14144 9 WKKFKD 14 (199)
T ss_pred HHHHHH
Confidence 777763
No 331
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.39 E-value=2.8e+02 Score=29.58 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhh--hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHh
Q 022776 42 DQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDER--AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAS-TEQLQ 118 (292)
Q Consensus 42 DDLeDFka~~~~Lt~elkenSeK~kEVsALLaEK--dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~-~E~LQ 118 (292)
+++++++.++.-+...+++=++.-..+..++... +=-|++.+.-+.++...+..-+ +| ..+..+... +++++
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~---~~--~~~~~~~~~~l~~~~ 660 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN---LQ--AELEELLQAALEELE 660 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---hH--HHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 119 LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 119 s~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
....+...++.+ .....+.+...++..++++.+..+|+..+
T Consensus 661 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~el~~~~ 701 (908)
T COG0419 661 EKVEELEAEIRR-ELQRIENEEQLEEKLEELEQLEEELEQLR 701 (908)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 332
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.34 E-value=3.2e+02 Score=31.10 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCC--CCccchhhhhhhhhhhhhhhhHHhhhhhHH
Q 022776 47 FMAWFDLLRQKPKD--GEPKSIEVSAFLDERAFLWNQYKVMENDLT 90 (292)
Q Consensus 47 Fka~~~~Lt~elke--nSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt 90 (292)
|++-|..|.+..+- -.+.+-|--++...++-+=-+++.++.++.
T Consensus 227 ~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~ 272 (1072)
T KOG0979|consen 227 KKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIK 272 (1072)
T ss_pred HHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555544222 235555666666677777777777666554
No 333
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.30 E-value=70 Score=26.04 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQL 117 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~L 117 (292)
.+++++.+.+++|++.++.|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 334
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.19 E-value=6.8e+02 Score=26.48 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhchhhHHhHHHHHHHHhcCCCC
Q 022776 29 EASLLKLMLEYTDDQLADFMAWFDLLRQKPKD 60 (292)
Q Consensus 29 E~sl~kl~lElaEDDLeDFka~~~~Lt~elke 60 (292)
|+.-+..+++.+..+.+-|..=|+-|..++++
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~e 124 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKE 124 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455556666666777666666666665444
No 335
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.15 E-value=3.1e+02 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=13.1
Q ss_pred hcccchhhHHHHHHHHHHHHHh
Q 022776 140 TGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
..-..|.++=..|..++..+.+
T Consensus 91 ~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 91 ESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666654
No 336
>PRK14151 heat shock protein GrpE; Provisional
Probab=29.84 E-value=56 Score=28.99 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
.|.+.++.|+....+--+...|++|++.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~e 51 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQ 51 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443455566665553
No 337
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.80 E-value=2.6e+02 Score=29.28 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhhchhhHHhHHHHH
Q 022776 28 REASLLKLMLEYTDDQLADFMAWF 51 (292)
Q Consensus 28 rE~sl~kl~lElaEDDLeDFka~~ 51 (292)
-+..--+-.++-+-|||-+..+-+
T Consensus 24 e~~~rq~a~~qa~q~dl~~lrtql 47 (542)
T KOG0993|consen 24 EDLKRQNAVLQAAQDDLGHLRTQL 47 (542)
T ss_pred hHHHhccchhhhhcchHHHHHHHH
Confidence 344444556777778887776643
No 338
>PF14282 FlxA: FlxA-like protein
Probab=29.80 E-value=2.4e+02 Score=22.78 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQL----SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs----~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
...+++-+..|+.|.+.+..|.. ....|...+.-|++++..+ .-.|..|..+.-..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~L-------qaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQL-------QAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 46677788888888888888876 3356677777777777633 34455555444333
No 339
>PLN02678 seryl-tRNA synthetase
Probab=29.79 E-value=1.9e+02 Score=29.20 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
...|.+++.++....+....++..++.+|..+
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333344444444444433
No 340
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.64 E-value=4.1e+02 Score=26.13 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=37.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh---hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 87 NDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKD---ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 87 ~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKD---deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+...-|++-..++..+-|+|++-.+.++. |+...+++. ++++..+.+..+....+.+.-.++.+++.+|+..+
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666655554432 333333332 23333444444444555555555566666666554
No 341
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.55 E-value=4.4e+02 Score=25.93 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHHH
Q 022776 145 WNTEISRLTQELEL 158 (292)
Q Consensus 145 k~eEIs~L~~ELe~ 158 (292)
.+.-|.+|+.|+..
T Consensus 333 IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 333 IKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 342
>PRK14147 heat shock protein GrpE; Provisional
Probab=29.51 E-value=52 Score=29.08 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
.+...|++|+.. .-.-+..+|.+.+++.-..
T Consensus 38 kd~~lR~~Ad~e----------N~rkR~~kE~e~~~~~a~~ 68 (172)
T PRK14147 38 KADALRERADLE----------NQRKRIARDVEQARKFANE 68 (172)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 456677776663 3334555566666555443
No 343
>PHA03332 membrane glycoprotein; Provisional
Probab=29.50 E-value=2.3e+02 Score=32.70 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
+.++...++|+.+.+-+..++...-+=+|.|.+|-++| ....++-+.+|+.|++++.
T Consensus 891 aaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl---~~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 891 AATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATL---DNNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HhhHHHhcccHHHHHHHHH
Confidence 34445666777777777777777777788888776554 4566667778888887764
No 344
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.33 E-value=4.9e+02 Score=27.90 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=16.1
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHh
Q 022776 137 QMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 137 eMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+....++--++|.++-.++..+++
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556777777777777765
No 345
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.31 E-value=1.4e+02 Score=25.21 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=33.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 87 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 87 ~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
++|+ +|+.......+|- =.=++....|...-..||..|.+++.++.-+.=.-...-.+|+.|-.||+
T Consensus 5 ~eYs-KLraQ~~vLKKaV---ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYS-KLRAQNQVLKKAV---IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 5555444444431 11123334455555566666666666655444444444455666666665
No 346
>PF12562 DUF3746: Protein of unknown function (DUF3746); InterPro: IPR022219 This C-terminal domain characterises the poxvirus I6 proteins, it is approximately 40 amino acids in length. The family is found in association with PF04595 from PFAM.
Probab=29.18 E-value=22 Score=25.27 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=9.4
Q ss_pred cccccccccCCC
Q 022776 275 SKFKVPKLKNSF 286 (292)
Q Consensus 275 s~fkvpklk~~s 286 (292)
|+|.+|+|+++-
T Consensus 1 StF~~PtL~v~~ 12 (37)
T PF12562_consen 1 STFDVPTLKVSK 12 (37)
T ss_pred CCccCCeeeccc
Confidence 688999998654
No 347
>PRK00106 hypothetical protein; Provisional
Probab=29.17 E-value=4.6e+02 Score=27.35 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=8.8
Q ss_pred cCCCCCCcceec
Q 022776 224 LGGKNGDNVVVN 235 (292)
Q Consensus 224 ~~g~~~~n~~~~ 235 (292)
--||.|+||-.=
T Consensus 240 iIGreGrNir~~ 251 (535)
T PRK00106 240 IIGREGRNIRTL 251 (535)
T ss_pred eeCCCcchHHHH
Confidence 468999998543
No 348
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.03 E-value=91 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 107 IEKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 107 iqKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
|..|.+.++.|+....+--+...|++|+.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~ 67 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADF 67 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333334445555443
No 349
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.98 E-value=1.7e+02 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=39.7
Q ss_pred hhHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 87 NDLTSKINSKRAEVDRAN---ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 87 ~Dyt~~LK~K~~EvaQAn---E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
.+.-.+|-.|+.|...-- +.-+|.-+.+..|.....++|+.|..||..+.+-|.
T Consensus 46 v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 46 VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356667778877764332 334677777888889999999999999998875554
No 350
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.91 E-value=2e+02 Score=27.16 Aligned_cols=14 Identities=0% Similarity=0.192 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHhh
Q 022776 125 DETIAKLKTQIAQM 138 (292)
Q Consensus 125 DdeI~RLqaKlaeM 138 (292)
++++.....++.++
T Consensus 26 ~~~~~~~~~~~~~l 39 (378)
T TIGR01554 26 EKELTAAALEKEEL 39 (378)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 351
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.83 E-value=1.4e+02 Score=34.00 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=59.9
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhcCCCCC-Cccc-hhhhhh-------hhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHH
Q 022776 33 LKLMLEYTDDQLADFMAWFDLLRQKPKDG-EPKS-IEVSAF-------LDERAFLWNQYKVMENDLTSKINSKRAEVDRA 103 (292)
Q Consensus 33 ~kl~lElaEDDLeDFka~~~~Lt~elken-SeK~-kEVsAL-------LaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQA 103 (292)
++....-+|++...-.-......++.++- .+|. .|.+-- .-..-|+|-+|.+ | ...+.+
T Consensus 165 lK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhv-E-----------~~i~k~ 232 (1141)
T KOG0018|consen 165 LKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHV-E-----------ACIEKA 232 (1141)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h-----------hhHhhh
Confidence 34444455666655555555555554331 0111 111111 1233588988875 2 334455
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
++.+.-+.+....++..-++++.+|...+-+.++|-.+.-+-|..|+..+..|-.
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555566666666666666666666665555555555555555555555444
No 352
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.83 E-value=1.1e+02 Score=33.16 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=20.2
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhcccch-------hhHHHHHHHHHHHHHhh
Q 022776 118 QLSNNEKDETIAKLKTQIAQMETGSKKW-------NTEISRLTQELELLRKS 162 (292)
Q Consensus 118 Qs~nqeKDdeI~RLqaKlaeMe~~~Kkk-------~eEIs~L~~ELe~lrks 162 (292)
|+--||=..+|..++.|+.|+..+.-.+ +.+|+.-...++.||.-
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3333333344444444444443333344 44455555555566543
No 353
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=3.3e+02 Score=29.61 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
....+..+.++++|..-++...+|..+.-+.. ...+|+++|.+.|+-+++.-.
T Consensus 573 ~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~-------rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 573 IELEKSEAKLEQIQEQYAELELELEIEKFKRK-------RLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccccc
Confidence 33445555566666666666666665555543 678999999999999988766
No 354
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=28.77 E-value=3.8e+02 Score=29.56 Aligned_cols=47 Identities=32% Similarity=0.335 Sum_probs=27.8
Q ss_pred HHhhhhhhhhhHHHHHH--------------HHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 116 QLQLSNNEKDETIAKLK--------------TQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 116 ~LQs~nqeKDdeI~RLq--------------aKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.||.-.++||++|..|. .+...-.-+.|+.+++-.-|.++|+.++.+
T Consensus 244 ~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~s 304 (786)
T PF05483_consen 244 LLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQS 304 (786)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 45555555555555553 333334455667777777788888765544
No 355
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=28.72 E-value=1.5e+02 Score=25.06 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 101 DRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
.+....++.|..++|+ |+++...=+++...|++++. ...++.+..++.+.+-
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~---~~Lk~~r~rl~~~~d~ 63 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAE---SALKEARDRLGDTGDA 63 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH---HHHHHHHHHHHhhhhH
Confidence 6777788889999988 77888888888888888773 5666667777766543
No 356
>PRK14127 cell division protein GpsB; Provisional
Probab=28.64 E-value=2.1e+02 Score=24.04 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022776 127 TIAKLKTQIA 136 (292)
Q Consensus 127 eI~RLqaKla 136 (292)
++.+|+.++.
T Consensus 52 e~~~l~~~l~ 61 (109)
T PRK14127 52 ENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 357
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.64 E-value=2e+02 Score=28.29 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=5.4
Q ss_pred cccccccCc
Q 022776 262 DVIPILDTP 270 (292)
Q Consensus 262 ~~~~~~etp 270 (292)
-.+|++|+|
T Consensus 228 ~L~pTsE~~ 236 (418)
T TIGR00414 228 YLIPTAEVP 236 (418)
T ss_pred EEEeCCcHH
Confidence 345666666
No 358
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.52 E-value=2e+02 Score=27.73 Aligned_cols=77 Identities=22% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHhhhchhhHHhH-HHHHHHHhcC-----CCCC---------CccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhH
Q 022776 33 LKLMLEYTDDQLADF-MAWFDLLRQK-----PKDG---------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKR 97 (292)
Q Consensus 33 ~kl~lElaEDDLeDF-ka~~~~Lt~e-----lken---------SeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~ 97 (292)
-.++||++ ||||.. +-.|+-|.-. |+.+ --|+-|+..||. .+-+|-++=+ ++..-+
T Consensus 10 rerLL~~~-dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llk---la~eq~k~e~-----~m~~Le 80 (272)
T KOG4552|consen 10 RERLLESA-DDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLK---LAPEQQKREQ-----LMRTLE 80 (272)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHH---HhHhHHHHHH-----HHHHHH
Confidence 34556655 566664 6677777433 2222 245666666653 4455555422 445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022776 98 AEVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQ 118 (292)
++|+.--+.||+|+.++...+
T Consensus 81 a~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 81 AHVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 788888999999998876544
No 359
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.31 E-value=5.2e+02 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=17.8
Q ss_pred cccccccCC-CCCccCCCCCccccccccCCCCCCcceecc
Q 022776 198 IKGRLRKSG-SSSVTPLSNYSTTTAQSLGGKNGDNVVVNK 236 (292)
Q Consensus 198 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~n~~~~k 236 (292)
+--|+|+.+ +-.|.|+-+- .| .||||.+.-
T Consensus 179 ~yeri~~~~kg~gvvpl~g~-------~C--~GC~m~l~~ 209 (239)
T COG1579 179 EYERIRKNKKGVGVVPLEGR-------VC--GGCHMKLPS 209 (239)
T ss_pred HHHHHHhcCCCceEEeecCC-------cc--cCCeeeecH
Confidence 345666666 6667776553 23 367776643
No 360
>PRK14154 heat shock protein GrpE; Provisional
Probab=28.20 E-value=65 Score=29.65 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
..|.+.++.|+....+-.+...|++|+..
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfe 83 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMD 83 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444566677776664
No 361
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.99 E-value=3.3e+02 Score=25.20 Aligned_cols=41 Identities=10% Similarity=0.204 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
+.++.+++..+.+..|.+.++.|+....+--+...|++|+.
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef 91 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY 91 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666665555555555555566666554
No 362
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.76 E-value=1.7e+02 Score=25.97 Aligned_cols=33 Identities=6% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKT 133 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa 133 (292)
+...+..+.|.+.+++||..-..|+|+|+.-|=
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 445556677777888888888888888887643
No 363
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=2.3e+02 Score=24.31 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc--------cchhhHHHHHHHHHHHHH
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS--------KKWNTEISRLTQELELLR 160 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~--------Kkk~eEIs~L~~ELe~lr 160 (292)
.++=+.-.++|..=.+.|......-|....+| ++.++.+|..+. ....++|.+|++.+..|-
T Consensus 34 VkkGeln~eEak~~vddl~~q~k~~~~e~e~K------~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 34 VKKGELNAEEAKRFVDDLLRQAKEAQGELEEK------IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLE 103 (108)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHh------hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666555444444 444555444433 356677777877776553
No 364
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=27.06 E-value=53 Score=28.26 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=21.7
Q ss_pred hhhcchhhhHHHHHHHHhh----hchhhHH
Q 022776 20 DMVVGLKLREASLLKLMLE----YTDDQLA 45 (292)
Q Consensus 20 dl~LGlKerE~sl~kl~lE----laEDDLe 45 (292)
..++|+++.|+.+|+.++| .+.|||+
T Consensus 20 ~c~~GLs~~Dv~v~~~LL~~~~~~tvdela 49 (126)
T COG3355 20 KCVYGLSELDVEVYKALLEENGPLTVDELA 49 (126)
T ss_pred HHHhCCcHHHHHHHHHHHhhcCCcCHHHHH
Confidence 4679999999999999995 5667765
No 365
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.02 E-value=5e+02 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 143 KKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 143 Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
.+|+..+.+|..|+.... +|.+.++
T Consensus 75 R~yksdl~~l~~e~k~~~-~~~~~~~ 99 (220)
T KOG1666|consen 75 REYKSDLKKLKRELKRTT-SRNLNAG 99 (220)
T ss_pred HHHHHHHHHHHHHHHHhh-ccccccc
Confidence 478888889999999888 6654443
No 366
>PRK00736 hypothetical protein; Provisional
Probab=26.88 E-value=1.1e+02 Score=23.17 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.|..|..-++ +-..+|.+|.+.|+.|
T Consensus 18 e~tie~Ln~~v~-------~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 18 EKTIEELSDQLA-------EQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 445555555554 3334455555555555
No 367
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=26.82 E-value=83 Score=32.14 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=9.3
Q ss_pred cccccccccCcccc
Q 022776 260 AVDVIPILDTPKLF 273 (292)
Q Consensus 260 ~~~~~~~~etpklf 273 (292)
.+++|.+.+||=-|
T Consensus 221 ~lPIVtLVDTpGA~ 234 (431)
T PLN03230 221 GFPILTFVDTPGAY 234 (431)
T ss_pred CCCEEEEEeCCCcC
Confidence 56667777777544
No 368
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.59 E-value=2.6e+02 Score=27.55 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKT---QIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa---KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
..+...+|+..++.|+..-++--.+|..+.. +..++-...++.+++|..|+.++..+...+..
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555444444455544221 23445566677788888888888877777653
No 369
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.53 E-value=5.4e+02 Score=27.65 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=45.5
Q ss_pred hcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHH
Q 022776 22 VVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVD 101 (292)
Q Consensus 22 ~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~Eva 101 (292)
.+|+.+-=+.--+.++. ++-.+|-..+.-|..+-.+..++..|+..++++-.-.=++|. ..+..+-+.++....
T Consensus 496 ~~Glp~~ii~~A~~~~~---~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~---~~~~~l~~~~~~~~~ 569 (782)
T PRK00409 496 RLGLPENIIEEAKKLIG---EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE---EKKEKLQEEEDKLLE 569 (782)
T ss_pred HhCcCHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44555443333333333 344455566666666655555666677776666555544443 333333455555556
Q ss_pred HHHHHHHHHHHHH
Q 022776 102 RANERIEKLLAST 114 (292)
Q Consensus 102 QAnE~iqKLlq~~ 114 (292)
+|.+.++.++...
T Consensus 570 ~~~~~a~~~l~~a 582 (782)
T PRK00409 570 EAEKEAQQAIKEA 582 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555544443
No 370
>PRK02119 hypothetical protein; Provisional
Probab=26.52 E-value=3e+02 Score=21.28 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++.|..|..-++ +-..+|.+|.+.|..|+
T Consensus 22 E~tie~LN~~v~-------~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 22 ENLLEELNQALI-------EQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 455555555555 33445566666666553
No 371
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=26.52 E-value=2.2e+02 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQL 119 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs 119 (292)
+.-.++++..++.+++++-+...|+||.
T Consensus 137 k~D~~eA~~t~lk~~~~~~~~~le~Lqk 164 (192)
T COG5374 137 KIDKMEADSTDLKARLRKAQILLEGLQK 164 (192)
T ss_pred chhhhhcchHHHHHHHhhhhHHHHHHHH
Confidence 3445555666666666666666666663
No 372
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=5.2e+02 Score=28.12 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=28.4
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhh
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINS 95 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~ 95 (292)
-+..+.+.|+.+..+.|+|..-.++++.+.+..
T Consensus 311 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (698)
T KOG0978|consen 311 SKSRDLESLLDKIQDLISQEAELSKKLRSKLLE 343 (698)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999887777766
No 373
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.14 E-value=5.2e+02 Score=26.43 Aligned_cols=6 Identities=50% Similarity=1.055 Sum_probs=2.9
Q ss_pred cccccc
Q 022776 197 GIKGRL 202 (292)
Q Consensus 197 ~~~~~~ 202 (292)
.+|||+
T Consensus 214 ~~kgri 219 (514)
T TIGR03319 214 EMKGRI 219 (514)
T ss_pred hhhccc
Confidence 345554
No 374
>PRK00295 hypothetical protein; Provisional
Probab=26.00 E-value=2.7e+02 Score=21.17 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHH
Q 022776 129 AKLKTQIAQMETGSKKWNTEISRLT 153 (292)
Q Consensus 129 ~RLqaKlaeMe~~~Kkk~eEIs~L~ 153 (292)
.+|+.+++..|-.....++.+-+..
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 375
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.98 E-value=7e+02 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=26.4
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 137 QMETGSKKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 137 eMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
+|...++-|++|...|..+|--+++.++--++
T Consensus 272 e~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~ 303 (716)
T KOG4593|consen 272 ENRETVGLLQEELEGLQSKLGRLEKLQSTLLG 303 (716)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999998888888774443
No 376
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.86 E-value=4e+02 Score=22.43 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=25.0
Q ss_pred HHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 132 KTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 132 qaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
|++-..+....+.++..|.++.+|+++| .+|+.|+|-
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL-~FrN~QL~k 61 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSL-TFRNQQLTK 61 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444455555557888888888888887 467766664
No 377
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.71 E-value=4.3e+02 Score=22.68 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=38.2
Q ss_pred hhhhhhh--HHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 75 RAFLWNQ--YKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 75 KdFVWNQ--~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
.-|+|-. .++|++--. .+...-.++.++.+.+++++...++ |+....+-.+.|..-+.+.
T Consensus 44 ~~f~~~~~v~~~L~~R~~-~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a 106 (184)
T PRK13455 44 VYFKVPGMIGGMLDKRAE-GIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEA 106 (184)
T ss_pred HHHhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677764 367776654 6777777777887777776666554 6655555555555544443
No 378
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.29 E-value=1.1e+02 Score=24.14 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022776 151 RLTQEL 156 (292)
Q Consensus 151 ~L~~EL 156 (292)
.|+.+|
T Consensus 95 elk~~l 100 (105)
T cd00632 95 ELQEKI 100 (105)
T ss_pred HHHHHH
Confidence 333333
No 379
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=25.22 E-value=2e+02 Score=26.93 Aligned_cols=53 Identities=30% Similarity=0.317 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++|+-..=+|++...+-.+||.|-+.++..+.-+.++.-.|-.+..+.+|.|.
T Consensus 8 q~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 8 QKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666888888888888988888888888888888888889999999887
No 380
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=25.14 E-value=2.5e+02 Score=31.08 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhh-----h--hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNE-----K--DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqe-----K--DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
..+|++.-...+++|++.++.++..-.+ | .+.+.+-..++. +..++|.+|+..|+.|+.+-.
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~-------~~~~~l~~le~~l~~L~~~~~ 908 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAE-------ELREKRGKLEAHRAMLSGSEA 908 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccc
Confidence 3445555555555555555554422111 1 233444444443 667888899999999987543
No 381
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=25.05 E-value=7.2e+02 Score=28.51 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT-------QIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa-------KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
.++..-.+.++.+....++|.+...+=+.+|+..+. ++.+.....+..+.++.++..+||.+++-+
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555666533333444444433 223333333445555666666666665543
No 382
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.95 E-value=58 Score=29.79 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
..|.+.++.|+....+..+...|++|+.. .=.-+..+|.+.+++.-..
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~Aefe----------N~RKR~~kE~e~~~~~a~~ 63 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAE----------NTKRRAEREMNDARAYAIQ 63 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555567777777663 2233444555555554443
No 383
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.82 E-value=6.3e+02 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhhhh
Q 022776 125 DETIAKLKTQIAQMET 140 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~ 140 (292)
-+||..|+.+++-||.
T Consensus 275 q~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 275 QNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3567777766665553
No 384
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.64 E-value=3e+02 Score=23.81 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhccc
Q 022776 129 AKLKTQIAQMETGSK 143 (292)
Q Consensus 129 ~RLqaKlaeMe~~~K 143 (292)
..|++++.+++...+
T Consensus 54 eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 54 EELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 385
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=24.60 E-value=84 Score=29.94 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=66.4
Q ss_pred Cccchhhhhhhhhhhh---h------hhhHHhhhhhHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhhhh---
Q 022776 62 EPKSIEVSAFLDERAF---L------WNQYKVMENDLTSKINS-----KRAEVDRANERIEKLLASTEQLQLSNNEK--- 124 (292)
Q Consensus 62 SeK~kEVsALLaEKdF---V------WNQ~k~ME~Dyt~~LK~-----K~~EvaQAnE~iqKLlq~~E~LQs~nqeK--- 124 (292)
+-|=.|+..+..+.+. | =.|.+.||..+-..+=. -++=+..|..+-.|||..+.+|+=.--..
T Consensus 52 ~gk~~e~~~~~~~~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~ 131 (351)
T TIGR03156 52 KGKVEEIAELVEELEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGG 131 (351)
T ss_pred ccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhh
Confidence 5677778777665442 2 46889999875322211 23566789999999999999887221111
Q ss_pred hhHHHHHHHHH-------HhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 125 DETIAKLKTQI-------AQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 125 DdeI~RLqaKl-------aeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
...++|+.+-+ .+++.+......+|..|.++|+.+++.|.
T Consensus 132 ~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~ 178 (351)
T TIGR03156 132 WTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRE 178 (351)
T ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12255554321 12355556678899999999999988865
No 386
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.56 E-value=4.8e+02 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.+.+.......-...|..|+.+|+.++..
T Consensus 150 ~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 150 DVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred hHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 33444455556677888888888888764
No 387
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.40 E-value=2.3e+02 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcc
Q 022776 149 ISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 149 Is~L~~ELe~lrksr~a~~tp 169 (292)
+.-|...|+.|+.|..--+.+
T Consensus 118 ~~Gldeqi~~lkes~~yLF~~ 138 (155)
T PF06810_consen 118 LKGLDEQIKALKESDPYLFEE 138 (155)
T ss_pred cccHHHHHHHHHhcCchhccC
Confidence 555667777777777544433
No 388
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=24.32 E-value=1.9e+02 Score=27.10 Aligned_cols=42 Identities=36% Similarity=0.563 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
|+..+||+-+-+||..-.++..-=-||.+ +|++||+.||.--
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR~-----------------~lE~EL~~lr~qq 44 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLRT-----------------RLERELESLRAQQ 44 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhh
Confidence 56788999999999887766655555554 4568888887543
No 389
>PLN02943 aminoacyl-tRNA ligase
Probab=24.26 E-value=2.9e+02 Score=30.21 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEK-------DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeK-------DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.++|+++.+.++++|++.++.++.--.+. .+.+.+-+.|++ +..+++..|+..|+.|++
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~-------~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAA-------EAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 55777788888888888888877322211 255666666776 566777778777777763
No 390
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.25 E-value=1.9e+02 Score=29.51 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
.++..+..++.++.....+.++++++|+++++.++....
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ 131 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGN 131 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344555555555555555667777777777777776655
No 391
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.19 E-value=3.5e+02 Score=30.53 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=16.2
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022776 85 MENDLTSKINSKRAEVDRANERIEKLLAS 113 (292)
Q Consensus 85 ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~ 113 (292)
|=.+..+.+++-+.|.+-....+++|+-+
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555665555566665555
No 392
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=24.18 E-value=6.7e+02 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022776 99 EVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQ 118 (292)
+++++...+..|...+.+++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~ 256 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444443
No 393
>PRK00736 hypothetical protein; Provisional
Probab=24.16 E-value=3e+02 Score=20.95 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
|.+|+.+++..|-.....++.|-+..+++..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~ 37 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQ 37 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 394
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=23.98 E-value=4.4e+02 Score=25.03 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=54.5
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh------hcccchhhHH
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME------TGSKKWNTEI 149 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe------~~~Kkk~eEI 149 (292)
.-.|.+-..|..+...+ ......++..|..|+-.--.|+ +=-+.+.|++.++.+.- .+.+...+||
T Consensus 43 aa~~~is~~l~~~~~~L----~q~~~n~~~g~s~lqtae~aL~----~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei 114 (360)
T COG1344 43 AAGLAIALRLRSQIRGL----SQAKDNAQDGISKLQTAEGALS----EISKILQRIKELAVQAANGTLSDADRAAIQKEI 114 (360)
T ss_pred HHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44688888888777632 2344455555555554444444 33567888999888776 5667788899
Q ss_pred HHHHHHHHHHHhhc
Q 022776 150 SRLTQELELLRKSR 163 (292)
Q Consensus 150 s~L~~ELe~lrksr 163 (292)
..|.+||..+=-..
T Consensus 115 ~~l~~el~~iantt 128 (360)
T COG1344 115 EQLLDELDNIANTT 128 (360)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998876555
No 395
>PRK14159 heat shock protein GrpE; Provisional
Probab=23.96 E-value=1.2e+02 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
|++|..|+.++. ++++...++..+.+++|+
T Consensus 29 ~~~i~~l~~e~~-------elkd~~lR~~AdfeN~rk 58 (176)
T PRK14159 29 DVEQNKLQKDYD-------ELKDKYMRANAEFENIKK 58 (176)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 555666666655 334555555555555554
No 396
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.75 E-value=4.6e+02 Score=22.30 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred hhhhhhhH-HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 022776 75 RAFLWNQY-KVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 75 KdFVWNQ~-k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKl 135 (292)
..|.|.-+ ++||. -...+.+--.+++++.+.++.+++..+. |+....+-.+.|..-+...
T Consensus 28 ~k~l~~pi~~~le~-R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a 89 (167)
T PRK14475 28 LKVLPKALAGALDA-YAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADA 89 (167)
T ss_pred HHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777764 44443 3446666667777777777777666655 6666666666666555544
No 397
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.74 E-value=1.2e+02 Score=23.76 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
++..|...++.|+..-.+...+|..++..+
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333
No 398
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.58 E-value=2.7e+02 Score=19.66 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 112 ASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 112 q~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.|....+..-+.|-..+..|+.++. ....++..|.+++..|+
T Consensus 11 rNr~AA~r~R~rkk~~~~~le~~~~-------~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 11 RNREAARRSRQRKKQREEELEQEVQ-------ELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 3444444444445455555555554 34455555555555443
No 399
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.57 E-value=3.8e+02 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=17.0
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++.+.....-+.+.+|.+|..+|+.|+.-..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666655544
No 400
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.54 E-value=1.4e+02 Score=24.23 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 114 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 114 ~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
.++|..-.+---|+|.-||.++. +.+++...|++|.+.++-.|-|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEie-------ELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIE-------ELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHhHHHHHHHHHHHHH
No 401
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.53 E-value=2.7e+02 Score=25.90 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+=.-+...-++.++.|+.....++++|.+|+.+..
T Consensus 115 ~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 115 ERRKALEEALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677788888888889999999987655
No 402
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.52 E-value=1e+02 Score=27.99 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++.|..|+.++. ++++...++..|++++|+
T Consensus 42 ~~~~~~l~~e~~-------elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 42 GEIKEDFELKYK-------EMHEKYLRVHADFENVKK 71 (191)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344555555555 344555555555555554
No 403
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=23.50 E-value=3.3e+02 Score=22.02 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=6.8
Q ss_pred hhhhhhHHhhh
Q 022776 76 AFLWNQYKVME 86 (292)
Q Consensus 76 dFVWNQ~k~ME 86 (292)
.|+|.|...++
T Consensus 18 ~~l~~qs~~i~ 28 (110)
T PF10828_consen 18 GWLWYQSQRID 28 (110)
T ss_pred HHHHHHHHHHH
Confidence 46787775443
No 404
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.39 E-value=1.1e+02 Score=28.24 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=10.4
Q ss_pred chhhHHHHHHHHHHHHHh
Q 022776 144 KWNTEISRLTQELELLRK 161 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrk 161 (292)
++++...++..+.++.|+
T Consensus 79 elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 79 ALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555566666666554
No 405
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.38 E-value=5.5e+02 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=18.9
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQ 118 (292)
.++|+|.-. .++..+..-..|-...+..++.|...+..|+
T Consensus 24 ~a~~qqr~~---qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 24 SAQWQQRMQ---QMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666433 2222223333344445555566666655555
No 406
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.30 E-value=6.1e+02 Score=24.99 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=38.1
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ----LSNNEKDETIAKLKTQIAQMETGSKKWNTEISR 151 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQ----s~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~ 151 (292)
.|--=|--+|+.+.+ +|...+..-+.|.|=+..=|+..|+|. ++++=-++.++.|.+++...-++. +.||+|-+
T Consensus 190 ~F~~l~~cL~dREva-Ll~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~r-k~de~lg~ 267 (302)
T PF07139_consen 190 TFAELQSCLMDREVA-LLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSER-KYDEELGR 267 (302)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh-hhHHHHhH
Confidence 344444445555544 555555555555555555555555544 344455555555555555444433 34555544
Q ss_pred H
Q 022776 152 L 152 (292)
Q Consensus 152 L 152 (292)
.
T Consensus 268 ~ 268 (302)
T PF07139_consen 268 A 268 (302)
T ss_pred h
Confidence 3
No 407
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.23 E-value=2.7e+02 Score=28.92 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=4.9
Q ss_pred hhhhhHHHHHHH
Q 022776 122 NEKDETIAKLKT 133 (292)
Q Consensus 122 qeKDdeI~RLqa 133 (292)
+++..+|.|||.
T Consensus 51 ~~~E~~l~~Lq~ 62 (459)
T KOG0288|consen 51 QEKELELNRLQE 62 (459)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 408
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.18 E-value=3.9e+02 Score=25.89 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=11.3
Q ss_pred HhhhchhhHHhHHHHHHHHh
Q 022776 36 MLEYTDDQLADFMAWFDLLR 55 (292)
Q Consensus 36 ~lElaEDDLeDFka~~~~Lt 55 (292)
+-+++++||..-.+-+..|.
T Consensus 143 ~~~LS~~dl~e~~~~l~DLe 162 (269)
T PF05278_consen 143 LKELSESDLKEMIATLKDLE 162 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 34566666665555555554
No 409
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.17 E-value=4.3e+02 Score=28.91 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHH----HHHHHhhhhcccchhhHHHHHHHH
Q 022776 107 IEKLLASTEQLQLSNNEKDETIAKL----KTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 107 iqKLlq~~E~LQs~nqeKDdeI~RL----qaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
-++++..++..+-.-+.++..|..| +.++++|+++..+.|.-+|++.-+
T Consensus 121 e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e 173 (716)
T KOG4593|consen 121 EEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWE 173 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777775666677777665 558999999999999999998755
No 410
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=23.08 E-value=1.6e+02 Score=28.16 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
++..|+.+..+++...+..+.++.+|+.+++.++. ....+-.|+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 64 (389)
T PRK03992 16 QIRQLELKLRDLEAENEKLERELERLKSELEKLKS-PPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCceEEEEEEEeCC
Confidence 44445555555555555777778888888877665 23333344444443
No 411
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=1.8e+02 Score=28.51 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHH---hhhhcc----cchhhHHHHHHHHHHHHHhhcC
Q 022776 121 NNEKDETIAKLKTQIA---QMETGS----KKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 121 nqeKDdeI~RLqaKla---eMe~~~----Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
--+||-.|..|+++-. +||-.- .....+|..+-.+++.||+|.+
T Consensus 248 ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~sKs 298 (305)
T KOG3990|consen 248 ILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNSKS 298 (305)
T ss_pred HHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567777887777511 122221 1233445556667777776554
No 412
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=22.88 E-value=2.1e+02 Score=26.34 Aligned_cols=60 Identities=25% Similarity=0.456 Sum_probs=42.5
Q ss_pred hhhhhhhhhhhhhhHH--------hhhhhHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhHHH
Q 022776 68 VSAFLDERAFLWNQYK--------VMENDLTSKINSKRAEVDRA-NERIEKLLASTEQLQLSNNEKDETIA 129 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k--------~ME~Dyt~~LK~K~~EvaQA-nE~iqKLlq~~E~LQs~nqeKDdeI~ 129 (292)
|..|+..+. |+..+ .|-.|+..++..|-.+-.++ +.-+.+|..++|+|.-.+..||.--.
T Consensus 115 lk~lIdk~s--W~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~a 183 (202)
T PF05757_consen 115 LKELIDKKS--WPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPEA 183 (202)
T ss_dssp CHHHHHTT---HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHhhcc--HHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444443 66544 58899999999887666555 78889999999999998888876543
No 413
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.80 E-value=3.5e+02 Score=20.64 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhhhh
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKINS 95 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~ 95 (292)
.++.++..++..+-.++..+|+.....+..
T Consensus 37 ~~l~~~~~~k~~l~~~l~~le~~r~~~~~~ 66 (143)
T PF05130_consen 37 DELEELVEEKQELLEELRELEKQRQQLLAK 66 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443
No 414
>PRK04325 hypothetical protein; Provisional
Probab=22.67 E-value=1.5e+02 Score=22.86 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
|.+|+.+++..|-.....++.|-+..+++..|+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 415
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.48 E-value=4.5e+02 Score=21.72 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 122 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+.+++-+..|..++...+...+........|...++.++
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676777776666555554444444444444444443
No 416
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.41 E-value=4.5e+02 Score=26.31 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=10.3
Q ss_pred chhhHHhHHHHHHHHhcCCCC
Q 022776 40 TDDQLADFMAWFDLLRQKPKD 60 (292)
Q Consensus 40 aEDDLeDFka~~~~Lt~elke 60 (292)
.+-.+.+....|..|...+++
T Consensus 221 ~~~~~~el~~~~~~l~~~~~~ 241 (582)
T PF09731_consen 221 EEPEVQELVSIFNDLIESINE 241 (582)
T ss_pred hhhhHHHHHHhccchhhhhcc
Confidence 333345555555555544433
No 417
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.40 E-value=1.6e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
++..|+.+..+++...+..+.++.+|+.||+.++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555555555557778889999999988643
No 418
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=22.14 E-value=7.5e+02 Score=25.62 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=52.9
Q ss_pred hHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhH---HHHHHHHHH
Q 022776 81 QYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTE---ISRLTQELE 157 (292)
Q Consensus 81 Q~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eE---Is~L~~ELe 157 (292)
++..+|.....-|-.-+..|.+-.+.+...+..++.|...-...+.++.-+...++.||..-.-..-+ -..|-.||+
T Consensus 13 eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~ 92 (701)
T PF09763_consen 13 ELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELE 92 (701)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 34444444444444555567777788888888888888888888999999988888887655443222 224555555
Q ss_pred HHH
Q 022776 158 LLR 160 (292)
Q Consensus 158 ~lr 160 (292)
.|-
T Consensus 93 ~Ll 95 (701)
T PF09763_consen 93 NLL 95 (701)
T ss_pred HHH
Confidence 543
No 419
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=22.03 E-value=63 Score=22.86 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhHHhhhh
Q 022776 71 FLDERAFLWNQYKVMEN 87 (292)
Q Consensus 71 LLaEKdFVWNQ~k~ME~ 87 (292)
|-.||||.||-++-+|-
T Consensus 2 le~ERdFYf~KLR~IE~ 18 (43)
T PF03271_consen 2 LEKERDFYFNKLRDIEI 18 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 55799999998888774
No 420
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.98 E-value=4.1e+02 Score=21.09 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=26.1
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 86 ENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 86 E~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
-.||-.++.+--.|..+-..++-.|...-. ..-+.+.+||.||+.++.
T Consensus 27 ~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 27 KDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334444444433444443333333333222 345778999999999885
No 421
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=21.93 E-value=2.1e+02 Score=26.22 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccc
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRC 174 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~c 174 (292)
+++.|++---|.+.+++...++.+ ++++--.+.+.++..++...+.++.-+.=|++.+|.+-+- -++-+|--|
T Consensus 101 k~~ReId~t~e~l~k~~~e~~~~~----~~~~~~~~~ke~~~~l~~~l~~~~~~~~ll~~l~e~~~~~---ev~k~l~~~ 173 (177)
T COG1510 101 KWKREIDPTKEALKKLLEELNEDL----DDRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEFLESE---EVFKYLEKP 173 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHccccc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccc
Confidence 455677777777777776655433 1222334555666666677777777777788888877665 466666666
Q ss_pred cc
Q 022776 175 TR 176 (292)
Q Consensus 175 t~ 176 (292)
++
T Consensus 174 ~k 175 (177)
T COG1510 174 DK 175 (177)
T ss_pred cc
Confidence 65
No 422
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.92 E-value=1.2e+03 Score=26.66 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=73.2
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc-
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG- 141 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~- 141 (292)
+.-.++.+-|++++|+-.|+...|....+....-....+.|+..++-|-.-+..+-..++.=-.-|..++.++.++-..
T Consensus 504 ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~ 583 (1041)
T KOG0243|consen 504 EELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTL 583 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHH
Confidence 4556677778999999999999998888877777777888888888887777777766665555566666655544222
Q ss_pred ----ccchhhHHHHHHHHHHHHHhhcCCCC
Q 022776 142 ----SKKWNTEISRLTQELELLRKSRTASD 167 (292)
Q Consensus 142 ----~Kkk~eEIs~L~~ELe~lrksr~a~~ 167 (292)
.-....-|..|..-+..+-+++++..
T Consensus 584 ~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~ 613 (1041)
T KOG0243|consen 584 HGLVASSSSQQISQLTTMLAQMESFLSAKS 613 (1041)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhHHHhhhhc
Confidence 23345566777777777766666654
No 423
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.88 E-value=2.3e+02 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaK 134 (292)
+.+..+.++.+.+..+.|.....+..++|..|+.+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555556666666544
No 424
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.86 E-value=3.6e+02 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=15.4
Q ss_pred cccccccccccccccccCcccccccccc
Q 022776 252 GTRSSKRKAVDVIPILDTPKLFSSKFKV 279 (292)
Q Consensus 252 ~~r~~krk~~~~~~~~etpklfss~fkv 279 (292)
|+-|-=+++++-+|+ +.|.+|+-.+++
T Consensus 335 GshSyI~~~~~~~~~-el~l~~sgg~~~ 361 (447)
T KOG2751|consen 335 GSHSYIKKRMVNLPY-ELPLFQSGGLKF 361 (447)
T ss_pred cchhHHHHhccCCCc-cchhhcCCCcee
Confidence 555544444443443 778877776654
No 425
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=21.84 E-value=1.7e+02 Score=23.15 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
++..++.++.++....=. +.++..|-.+|+.+=+..+-.++
T Consensus 31 ~~~~~~~~l~~~~~~lP~-~~~~~~ll~~l~~~A~~~gv~l~ 71 (144)
T PF04350_consen 31 QLEQLEQQLEELLKKLPA-EEEIPSLLEDLNRLAKKSGVKLT 71 (144)
T ss_dssp HHHHHHHHHHHHHHCTTG-GGHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHCCCeEE
Confidence 444555555555544433 46788888888888777774443
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.82 E-value=4.1e+02 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 93 INSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
+..+..++++..+.++++.+..++
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~ 550 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQ 550 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 427
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.73 E-value=3.4e+02 Score=23.72 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|.+.+++|+. -|+-...|.+|++++. ..|+.|..+-..|..+|+.
T Consensus 14 L~~~L~~l~~-hq~~~~~I~~L~~e~~-------~ld~~i~~~~~~L~~~~~~ 58 (188)
T PF10018_consen 14 LSSALEELQE-HQENQARIQQLRAEIE-------ELDEQIRDILKQLKEARKE 58 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3344444432 2344667888888777 5566666666666666554
No 428
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.69 E-value=2.3e+02 Score=24.39 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+..+...++.+|.+.+..+ +.|+-=-+=.||+-++. +.++|++++.+++..-+.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~-------kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLD-------KLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3333344444444333322 34432233344555554 444444444444444333
No 429
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.66 E-value=6e+02 Score=29.31 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhhhhhhHHhhhhhHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 65 SIEVSAFLDERAFLWNQYKVMENDLTSKINSK---RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 65 ~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K---~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
++++..|=..=.-+-+-...++.+++..+++| +..+.+-++.|.-=.+.-...-...++-.++|..-+.+|.+++-.
T Consensus 271 ~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pk 350 (1200)
T KOG0964|consen 271 KCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPK 350 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred ccchhhHHHHHHHHHHHHHh---------hcCCCCccc
Q 022776 142 SKKWNTEISRLTQELELLRK---------SRTASDTPV 170 (292)
Q Consensus 142 ~Kkk~eEIs~L~~ELe~lrk---------sr~a~~tpv 170 (292)
--...++-..+...|-.|+. .|.+|+|..
T Consensus 351 y~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk 388 (1200)
T KOG0964|consen 351 YNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK 388 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
No 430
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.59 E-value=22 Score=29.43 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=4.1
Q ss_pred cccCCCCCccC
Q 022776 202 LRKSGSSSVTP 212 (292)
Q Consensus 202 ~~~~~~~~~~~ 212 (292)
|.+.|-..+.|
T Consensus 105 L~~~Gv~~i~~ 115 (165)
T PF01025_consen 105 LEKNGVEEIEP 115 (165)
T ss_dssp HHTTTEEEE--
T ss_pred HHHCCCEecCC
Confidence 44444444444
No 431
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.57 E-value=3.8e+02 Score=24.29 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=8.5
Q ss_pred cccccccccccccCCCCCc
Q 022776 192 RSSTAGIKGRLRKSGSSSV 210 (292)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ 210 (292)
|+...|++..+.......|
T Consensus 208 ~AP~dG~V~~~~~~~G~~v 226 (327)
T TIGR02971 208 KAPIDGRVLKIHAREGEVI 226 (327)
T ss_pred ECCCCeEEEEEecCCCCcc
Confidence 4445555554443333333
No 432
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.51 E-value=2.3e+02 Score=23.12 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 022776 100 VDRANERIEKLLASTEQLQLSNN 122 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nq 122 (292)
+.+|.+.+++|++.+++|+..-.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778899998888885433
No 433
>PRK02119 hypothetical protein; Provisional
Probab=21.37 E-value=1.7e+02 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
-|.+|+.+++..|-.....++.+-+..+++..|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 434
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.33 E-value=4.1e+02 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=16.9
Q ss_pred hcccchhhHHHHHHHHHHHHHh
Q 022776 140 TGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+.-+||-.|-.|.+.|..++.
T Consensus 187 ~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 187 LVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhc
Confidence 4456778888888888888776
No 435
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.15 E-value=6.1e+02 Score=22.78 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHhhhchhhHHhHHHHHHHHhcCCCC
Q 022776 31 SLLKLMLEYTDDQLADFMAWFDLLRQKPKD 60 (292)
Q Consensus 31 sl~kl~lElaEDDLeDFka~~~~Lt~elke 60 (292)
......++.++.++....-.|..|...|..
T Consensus 25 ~~~~~~~~~aE~e~~~l~rri~~lE~~le~ 54 (237)
T PF00261_consen 25 KEAEKRAEKAEAEVASLQRRIQLLEEELER 54 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666677777777777777766443
No 436
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.15 E-value=1.3e+02 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHH
Q 022776 146 NTEISRLTQELEL 158 (292)
Q Consensus 146 ~eEIs~L~~ELe~ 158 (292)
+.|++.|+.++|.
T Consensus 20 k~en~~i~~~ve~ 32 (55)
T PF05377_consen 20 KKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 437
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.12 E-value=5.2e+02 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=16.5
Q ss_pred cchhhhhhhhhhhhhhhhHHhhhhh
Q 022776 64 KSIEVSAFLDERAFLWNQYKVMEND 88 (292)
Q Consensus 64 K~kEVsALLaEKdFVWNQ~k~ME~D 88 (292)
++.+|+.+.-.....=+|+.-++.-
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~q 28 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQ 28 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777766666777666553
No 438
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.06 E-value=4.8e+02 Score=27.61 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+.++....+++.|-..+++++..|..|+..+.
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le 132 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELE 132 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555554444443
No 439
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.06 E-value=5.4e+02 Score=22.17 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=31.2
Q ss_pred hhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHH
Q 022776 41 DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA 98 (292)
Q Consensus 41 EDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~ 98 (292)
|..--.|++-|+-|..++.. --..+++.|.++...+=..+..|++.+..-+..-++
T Consensus 50 e~~~~~~~a~~~eLr~el~~--~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 50 ENQEYLFKAAIAELRSELQN--SRKSEFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666555332 223456666667776767777776666544444333
No 440
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.98 E-value=6.2e+02 Score=24.51 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=4.5
Q ss_pred hhhhHHHHHHH
Q 022776 93 INSKRAEVDRA 103 (292)
Q Consensus 93 LK~K~~EvaQA 103 (292)
|+.+=.|+..|
T Consensus 171 LR~~L~Ei~Ea 181 (269)
T PF05278_consen 171 LRSKLEEILEA 181 (269)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 441
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.96 E-value=1.4e+02 Score=29.06 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=0.0
Q ss_pred hhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 78 LWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST-EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 78 VWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~-E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
+..+.+.|..++. -||+...+.....+...+-...+ +.|.+-.++=.+.|+.|+..+.+|+...+....+|..|.+.|
T Consensus 103 l~~~~~elkkEie-~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 103 LKKRIKELKKEIE-NIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp ----------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 022776 157 ELL 159 (292)
Q Consensus 157 e~l 159 (292)
+.|
T Consensus 182 ~Dl 184 (370)
T PF02994_consen 182 DDL 184 (370)
T ss_dssp HHH
T ss_pred HHH
No 442
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=20.95 E-value=1.7e+02 Score=21.31 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 022776 146 NTEISRLTQELEL 158 (292)
Q Consensus 146 ~eEIs~L~~ELe~ 158 (292)
+..|..|..+|+.
T Consensus 30 ~k~le~L~~el~E 42 (45)
T PF04394_consen 30 NKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 443
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=20.90 E-value=3.5e+02 Score=28.98 Aligned_cols=58 Identities=21% Similarity=0.420 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEK-------DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeK-------DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+.|+++.+.++++|+..++.++.--++. .+.+..-+.|++ +..++|..|+..|..|+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~-------~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLA-------EYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 55777777777777777777766322211 133444445555 45566667766666653
No 444
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.87 E-value=4.8e+02 Score=21.49 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=15.0
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHH
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLT 90 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt 90 (292)
-|.+++..++=+|-+|..++++..
T Consensus 104 s~k~~l~~R~~~~~~~~~~~~~l~ 127 (218)
T cd07596 104 AVKETLDDRADALLTLQSLKKDLA 127 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666555
No 445
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.82 E-value=2.8e+02 Score=24.42 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=58.8
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHH-HHHHHHHHHHH
Q 022776 33 LKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEV-DRANERIEKLL 111 (292)
Q Consensus 33 ~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~Ev-aQAnE~iqKLl 111 (292)
.+.+-|.++.=+..-+.+++-|.-+++..+.+=. =+|.+++..=..-++.|+..+-|+ ++|++--.+|+
T Consensus 29 ~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~----------e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ 98 (155)
T PF07464_consen 29 VKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAE----------EALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQ 98 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHH----------HHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHH----------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3445566666666677777777777776444322 279999998888888999876665 46777777788
Q ss_pred HHHHHHhhhhhhhhhHHHH
Q 022776 112 ASTEQLQLSNNEKDETIAK 130 (292)
Q Consensus 112 q~~E~LQs~nqeKDdeI~R 130 (292)
..+.-|-...++=..+|.+
T Consensus 99 ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 99 SAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777666665555543
No 446
>PF13514 AAA_27: AAA domain
Probab=20.68 E-value=1.1e+03 Score=25.81 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.3
Q ss_pred hcCCCCcccccccccccccccc
Q 022776 162 SRTASDTPVLNRCTRIAGATTS 183 (292)
Q Consensus 162 sr~a~~tpvl~~ct~~~~~~~s 183 (292)
.|....-|||++-+.+-..=|.
T Consensus 973 ~r~~~~p~vl~~As~~f~~LT~ 994 (1111)
T PF13514_consen 973 YREERQPPVLARASEYFSRLTG 994 (1111)
T ss_pred HHHHhhHHHHHHHHHHHHHHhC
Confidence 4444566888887775444443
No 447
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.61 E-value=3e+02 Score=24.62 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+-+.-++.-++-++. +|..|+.++. ++++...++..|.+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~-------ei~~l~~e~~-------elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 11 QTINDIAEEIVETANP-------EITALKAEIE-------ELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHhhhhhhHH-------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
No 448
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=5.6e+02 Score=22.06 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=18.1
Q ss_pred hhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 80 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 80 NQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
+||..+.+.+...+-.|..-.++-.| +.+.+...+.
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E-~~~al~Ele~ 48 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKE-IEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 56666666666666555443333332 3444433333
No 449
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.44 E-value=3.4e+02 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc------------------ccchhhHHHHHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG------------------SKKWNTEISRLTQELEL 158 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~------------------~Kkk~eEIs~L~~ELe~ 158 (292)
+.-+.++.|.-+-|+-.++.++....||.++-..|.-+++|+-+- .++...-|++|+..++.
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 455778888888888888888888888888888887777766433 34555668899999886
Q ss_pred -HHhhcC
Q 022776 159 -LRKSRT 164 (292)
Q Consensus 159 -lrksr~ 164 (292)
|.-.|+
T Consensus 213 Lm~Eirn 219 (401)
T PF06785_consen 213 LMYEIRN 219 (401)
T ss_pred HHHHHHH
Confidence 677775
No 450
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=20.43 E-value=5.8e+02 Score=23.35 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHH
Q 022776 145 WNTEISRLTQELELL 159 (292)
Q Consensus 145 k~eEIs~L~~ELe~l 159 (292)
+..++..+.+.+..+
T Consensus 157 a~~~~~~a~~~~~~~ 171 (331)
T PRK03598 157 AQATLKSAQDKLSQY 171 (331)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 451
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=20.38 E-value=3.6e+02 Score=31.34 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=39.2
Q ss_pred hhhHHhhhhhHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhhhh---hhhh-----hHHHHHHHHHHhhhhcccc
Q 022776 79 WNQYKVMENDLTSKINS------KRAEVDRANERIEKLLASTEQLQLSN---NEKD-----ETIAKLKTQIAQMETGSKK 144 (292)
Q Consensus 79 WNQ~k~ME~Dyt~~LK~------K~~EvaQAnE~iqKLlq~~E~LQs~n---qeKD-----deI~RLqaKlaeMe~~~Kk 144 (292)
-++..++|.+..+..+. +...++.+-+-+.+|.+..+++-... +.++ .++...+.++.+.+...++
T Consensus 433 ~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~ 512 (1317)
T KOG0612|consen 433 HKTLQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRK 512 (1317)
T ss_pred ccchhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34555666665554333 33333433344455555555442111 1112 3334444455555555556
Q ss_pred hhhHHHHHHHHHHHH
Q 022776 145 WNTEISRLTQELELL 159 (292)
Q Consensus 145 k~eEIs~L~~ELe~l 159 (292)
...++..|..+|+.+
T Consensus 513 l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 452
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.33 E-value=1.3e+03 Score=26.48 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 022776 112 ASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD 167 (292)
Q Consensus 112 q~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~ 167 (292)
....-||.+|.+=.+....|+++-.-++-..-.+.+..-.|..+|+-++.+|++.+
T Consensus 256 E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 256 EQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444677777777777777777666666666677777788889999999988643
No 453
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=20.28 E-value=34 Score=35.31 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 133 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa 133 (292)
.+.+-+.++......++.+.+.++.++...++++..|..|++
T Consensus 179 ~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~ 220 (722)
T PF05557_consen 179 QAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQA 220 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777778888888888888888888888844
No 454
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=20.06 E-value=3.7e+02 Score=19.81 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD 167 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~ 167 (292)
..+.+.++. +.+..|+-|+.+|+.+......+.
T Consensus 35 ~~~~~~~l~-------~s~~kI~~L~~~L~~l~~~~~~~~ 67 (70)
T PF02185_consen 35 LSEAESQLR-------ESNQKIELLREQLEKLQQRSQNSQ 67 (70)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHCCHH---
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCcCCC
Confidence 444555554 778899999999999887766443
Done!