Query 022776
Match_columns 292
No_of_seqs 21 out of 23
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 10:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 95.5 0.015 5E-07 44.6 4.4 49 113-161 20-68 (72)
2 3oja_B Anopheles plasmodium-re 95.1 0.05 1.7E-06 50.4 7.6 67 96-162 507-573 (597)
3 1ic2_A Tropomyosin alpha chain 94.6 0.22 7.5E-06 37.2 8.6 73 92-164 7-79 (81)
4 3na7_A HP0958; flagellar bioge 94.1 0.8 2.7E-05 39.8 12.2 106 63-171 87-197 (256)
5 3u59_A Tropomyosin beta chain; 91.9 0.73 2.5E-05 35.6 7.9 73 92-164 10-82 (101)
6 3u1c_A Tropomyosin alpha-1 cha 91.3 0.93 3.2E-05 35.3 7.9 73 92-164 10-82 (101)
7 1zxa_A CGMP-dependent protein 91.2 0.18 6.3E-06 38.0 3.7 44 113-163 12-55 (67)
8 2jee_A YIIU; FTSZ, septum, coi 91.1 0.83 2.8E-05 35.6 7.4 59 92-157 7-79 (81)
9 1c1g_A Tropomyosin; contractIl 87.7 5.7 0.0002 31.0 10.0 60 99-158 70-129 (284)
10 3iv1_A Tumor susceptibility ge 87.4 3.2 0.00011 32.1 8.1 64 91-161 10-74 (78)
11 1t2k_D Cyclic-AMP-dependent tr 86.8 1.6 5.3E-05 31.0 5.7 52 110-161 6-57 (61)
12 3oja_B Anopheles plasmodium-re 86.1 6.8 0.00023 36.2 11.2 46 105-157 537-582 (597)
13 2eqb_B RAB guanine nucleotide 85.7 1.6 5.6E-05 34.9 5.9 53 108-160 8-60 (97)
14 1ci6_A Transcription factor AT 85.6 0.92 3.1E-05 32.8 4.1 53 109-161 6-58 (63)
15 2dfs_A Myosin-5A; myosin-V, in 85.0 3.3 0.00011 43.5 9.4 30 91-120 984-1013(1080)
16 2wt7_A Proto-oncogene protein 84.9 2.3 7.9E-05 30.5 5.9 52 110-161 7-58 (63)
17 1t6f_A Geminin; coiled-coil, c 84.8 1.4 4.6E-05 30.3 4.3 29 109-137 4-32 (37)
18 3hnw_A Uncharacterized protein 83.5 2.2 7.5E-05 35.1 6.0 91 69-160 28-123 (138)
19 1jnm_A Proto-oncogene C-JUN; B 83.3 1.5 5.2E-05 31.2 4.3 50 111-160 7-56 (62)
20 3mq7_A Bone marrow stromal ant 82.1 12 0.0004 31.3 9.7 69 84-162 29-100 (121)
21 2p2u_A HOST-nuclease inhibitor 82.1 2.8 9.5E-05 35.2 6.2 65 102-169 17-81 (171)
22 3trt_A Vimentin; cytoskeleton, 81.9 11 0.00039 27.1 8.7 44 111-161 34-77 (77)
23 3htk_A Structural maintenance 81.4 2.4 8.1E-05 29.4 4.7 54 105-158 5-58 (60)
24 3nmd_A CGMP dependent protein 81.1 4.2 0.00014 31.1 6.2 48 93-140 21-68 (72)
25 2v71_A Nuclear distribution pr 80.9 9.4 0.00032 33.4 9.2 90 34-123 23-120 (189)
26 3u59_A Tropomyosin beta chain; 80.1 18 0.00061 27.7 10.1 89 67-159 10-98 (101)
27 3ol1_A Vimentin; structural ge 77.3 23 0.00078 28.1 9.8 38 125-162 68-105 (119)
28 3na7_A HP0958; flagellar bioge 75.9 30 0.001 29.9 11.0 170 6-178 3-185 (256)
29 3u1c_A Tropomyosin alpha-1 cha 75.8 25 0.00087 27.1 10.1 88 68-159 11-98 (101)
30 3oja_A Leucine-rich immune mol 75.4 14 0.00047 33.7 9.1 32 81-113 354-385 (487)
31 3i00_A HIP-I, huntingtin-inter 75.2 14 0.00047 30.0 8.1 70 95-169 12-88 (120)
32 1l8d_A DNA double-strand break 74.1 24 0.00081 26.6 8.8 72 92-163 18-101 (112)
33 2ocy_A RAB guanine nucleotide 72.8 15 0.00052 31.2 8.1 49 111-159 43-91 (154)
34 1hjb_A Ccaat/enhancer binding 70.5 12 0.0004 29.1 6.3 52 113-164 23-74 (87)
35 1m1j_C Fibrinogen gamma chain; 69.9 33 0.0011 32.8 10.5 50 104-160 83-132 (409)
36 4emc_A Monopolin complex subun 68.7 8.1 0.00028 34.2 5.7 62 99-160 14-82 (190)
37 2dfs_A Myosin-5A; myosin-V, in 68.5 49 0.0017 34.8 12.3 19 100-118 986-1004(1080)
38 2zqm_A Prefoldin beta subunit 68.0 27 0.00093 26.1 7.9 39 123-161 67-105 (117)
39 3etw_A Adhesin A; antiparallel 67.7 48 0.0016 27.2 9.7 78 78-156 7-98 (119)
40 1m1j_C Fibrinogen gamma chain; 67.6 27 0.00093 33.3 9.5 84 76-160 27-118 (409)
41 1wlq_A Geminin; coiled-coil; 2 67.0 12 0.00041 29.4 5.7 42 100-141 26-67 (83)
42 3vkg_A Dynein heavy chain, cyt 66.3 13 0.00043 43.8 8.0 37 97-133 2013-2049(3245)
43 3hnw_A Uncharacterized protein 66.2 26 0.00089 28.7 7.9 19 100-118 98-116 (138)
44 2q6q_A Spindle POLE BODY compo 66.2 5.8 0.0002 30.6 3.7 52 111-162 2-53 (74)
45 2v4h_A NF-kappa-B essential mo 65.6 16 0.00056 29.9 6.5 21 141-161 84-104 (110)
46 2avr_X Adhesion A; antiparalle 65.4 54 0.0019 27.0 9.6 18 78-95 7-24 (119)
47 1gu4_A CAAT/enhancer binding p 64.6 21 0.00072 27.1 6.6 54 109-162 19-72 (78)
48 3ghg_C Fibrinogen gamma chain; 64.1 40 0.0014 32.5 9.9 57 101-164 80-136 (411)
49 2jee_A YIIU; FTSZ, septum, coi 63.8 32 0.0011 26.7 7.6 60 101-160 9-68 (81)
50 1lwu_C Fibrinogen gamma chain; 62.5 7 0.00024 36.3 4.3 51 103-160 3-53 (323)
51 3hhm_B NISH2 P85alpha; PI3KCA, 62.1 16 0.00054 34.2 6.7 59 108-166 201-259 (373)
52 2dgc_A Protein (GCN4); basic d 61.6 11 0.00037 27.3 4.3 47 109-155 13-59 (63)
53 4dk0_A Putative MACA; alpha-ha 60.7 69 0.0024 27.6 10.0 38 127-164 116-153 (369)
54 3tnu_B Keratin, type II cytosk 60.2 21 0.00072 28.3 6.2 36 125-160 74-109 (129)
55 3ghg_A Fibrinogen alpha chain; 58.4 19 0.00064 36.3 6.7 81 45-136 60-155 (562)
56 4etp_A Kinesin-like protein KA 57.7 14 0.00048 34.5 5.5 37 125-161 23-59 (403)
57 1gd2_E Transcription factor PA 57.2 8.1 0.00028 28.9 3.1 40 121-160 24-63 (70)
58 2no2_A HIP-I, huntingtin-inter 56.9 71 0.0024 25.2 8.9 59 101-159 43-101 (107)
59 1deq_A Fibrinogen (alpha chain 56.6 45 0.0015 32.3 8.8 90 33-136 54-158 (390)
60 3a7o_A Autophagy protein 16; c 56.6 25 0.00086 27.2 5.8 37 113-149 19-55 (75)
61 2zxx_A Geminin; coiled-coil, c 55.3 24 0.00083 27.3 5.5 35 100-134 22-56 (79)
62 4etp_A Kinesin-like protein KA 54.9 17 0.00057 34.0 5.5 63 101-163 6-68 (403)
63 2e7s_A RAB guanine nucleotide 54.7 25 0.00086 29.4 6.0 50 110-159 30-79 (135)
64 3vmx_A Voltage-gated hydrogen 54.2 16 0.00055 26.2 4.0 29 108-136 14-42 (48)
65 3bas_A Myosin heavy chain, str 53.9 69 0.0023 24.1 8.0 42 94-135 17-58 (89)
66 4gkw_A Spindle assembly abnorm 53.9 87 0.003 27.0 9.2 107 36-156 5-121 (167)
67 3oja_A Leucine-rich immune mol 52.0 1.2E+02 0.0041 27.5 10.5 33 127-159 429-461 (487)
68 3tnu_A Keratin, type I cytoske 51.8 80 0.0027 25.0 8.3 28 131-158 82-109 (131)
69 3mq9_A Bone marrow stromal ant 51.0 88 0.003 28.3 9.4 27 134-160 444-470 (471)
70 3mq9_A Bone marrow stromal ant 50.6 94 0.0032 28.1 9.5 29 132-160 435-463 (471)
71 1fxk_A Prefoldin; archaeal pro 50.4 73 0.0025 23.4 8.1 40 122-161 61-100 (107)
72 3o0z_A RHO-associated protein 48.8 1.3E+02 0.0045 25.9 10.3 49 101-156 86-134 (168)
73 3o0z_A RHO-associated protein 48.8 1.1E+02 0.0038 26.4 9.2 77 86-162 25-112 (168)
74 1ses_A Seryl-tRNA synthetase; 48.7 56 0.0019 30.6 8.0 71 91-161 28-99 (421)
75 3swk_A Vimentin; cytoskeleton, 47.8 88 0.003 23.6 8.2 64 98-161 21-84 (86)
76 1j1d_C Troponin I, TNI; THIN f 47.7 68 0.0023 26.6 7.5 60 113-175 59-118 (133)
77 3vkg_A Dynein heavy chain, cyt 47.5 51 0.0018 39.0 8.8 26 135-160 2016-2041(3245)
78 1go4_E MAD1 (mitotic arrest de 47.3 12 0.00042 29.9 2.8 45 126-171 12-59 (100)
79 1wle_A Seryl-tRNA synthetase; 47.1 51 0.0017 32.0 7.6 36 126-161 116-151 (501)
80 3mtu_A Tropomyosin alpha-1 cha 46.6 15 0.00052 27.4 3.1 21 67-87 24-44 (75)
81 3s4r_A Vimentin; alpha-helix, 46.5 96 0.0033 23.7 8.7 39 123-161 53-91 (93)
82 3jsv_C NF-kappa-B essential mo 44.6 39 0.0013 27.0 5.3 23 140-162 61-83 (94)
83 1go4_E MAD1 (mitotic arrest de 44.1 86 0.0029 25.0 7.3 60 103-162 10-90 (100)
84 2efr_A General control protein 43.9 1.1E+02 0.0037 25.8 8.3 101 40-157 26-129 (155)
85 3qne_A Seryl-tRNA synthetase, 43.7 62 0.0021 31.5 7.6 33 128-160 73-105 (485)
86 2dq0_A Seryl-tRNA synthetase; 42.6 68 0.0023 30.4 7.6 36 126-161 69-104 (455)
87 1zxa_A CGMP-dependent protein 42.4 29 0.001 26.0 4.1 28 114-141 27-54 (67)
88 2oqq_A Transcription factor HY 42.2 28 0.00096 24.4 3.7 33 129-161 6-38 (42)
89 1m1j_B Fibrinogen beta chain; 42.2 1.6E+02 0.0054 28.7 10.2 20 142-161 177-196 (464)
90 2l5g_B Putative uncharacterize 41.2 50 0.0017 23.1 4.8 35 88-122 6-40 (42)
91 3qh9_A Liprin-beta-2; coiled-c 40.9 1.1E+02 0.0038 23.9 7.2 14 143-156 64-77 (81)
92 1j1e_C Troponin I, TNI; THIN f 40.7 89 0.003 27.2 7.4 61 113-176 59-119 (180)
93 4ani_A Protein GRPE; chaperone 40.5 22 0.00074 31.4 3.6 29 108-136 62-90 (213)
94 1nkp_B MAX protein, MYC proto- 40.4 62 0.0021 23.6 5.6 24 96-119 38-61 (83)
95 2efr_A General control protein 39.7 1.7E+02 0.0058 24.6 10.9 86 33-122 26-115 (155)
96 2fxo_A Myosin heavy chain, car 39.2 1.4E+02 0.0048 23.5 9.2 30 134-163 98-127 (129)
97 2ve7_A Kinetochore protein HEC 38.7 72 0.0025 28.8 6.8 34 122-162 181-214 (315)
98 1tu3_F RAB GTPase binding effe 38.1 23 0.00079 27.6 3.0 52 113-164 6-57 (79)
99 3a2a_A Voltage-gated hydrogen 38.1 73 0.0025 23.6 5.5 31 108-138 21-51 (58)
100 3swf_A CGMP-gated cation chann 37.8 75 0.0026 24.4 5.7 49 103-161 5-53 (74)
101 1m1j_B Fibrinogen beta chain; 37.4 3E+02 0.01 26.8 12.8 17 39-55 97-113 (464)
102 4gkw_A Spindle assembly abnorm 35.8 1.2E+02 0.0042 26.0 7.4 25 62-86 56-80 (167)
103 3m9b_A Proteasome-associated A 35.4 40 0.0014 30.7 4.6 25 138-162 73-97 (251)
104 2v71_A Nuclear distribution pr 35.4 2.2E+02 0.0076 24.7 12.0 36 20-55 48-83 (189)
105 1vcs_A Vesicle transport throu 35.0 1.5E+02 0.0052 22.6 7.5 57 99-165 42-99 (102)
106 2ve7_C Kinetochore protein NUF 34.9 23 0.00078 31.3 2.9 44 99-142 142-185 (250)
107 1ykh_B RNA polymerase II holoe 34.1 92 0.0031 25.2 6.1 56 104-159 70-125 (132)
108 3lss_A Seryl-tRNA synthetase; 33.9 88 0.003 30.4 7.0 28 132-159 109-137 (484)
109 1uii_A Geminin; human, DNA rep 33.9 93 0.0032 24.3 5.8 35 102-136 36-70 (83)
110 1nkp_B MAX protein, MYC proto- 33.6 18 0.00062 26.5 1.7 23 134-156 55-77 (83)
111 1jnm_A Proto-oncogene C-JUN; B 33.0 66 0.0023 22.6 4.5 35 104-138 21-55 (62)
112 2wt7_A Proto-oncogene protein 32.9 97 0.0033 21.9 5.4 35 103-137 21-55 (63)
113 2wvr_A Geminin; DNA replicatio 32.6 1.1E+02 0.0039 27.4 6.9 42 100-141 103-144 (209)
114 1wle_A Seryl-tRNA synthetase; 32.5 2.4E+02 0.0082 27.3 9.7 67 99-165 71-148 (501)
115 1ytz_I Troponin I; muscle, THI 31.8 55 0.0019 28.6 4.7 75 99-176 32-116 (182)
116 1wt6_A Myotonin-protein kinase 31.7 99 0.0034 24.1 5.6 35 134-168 46-80 (81)
117 3a7p_A Autophagy protein 16; c 31.7 2.3E+02 0.0079 24.2 8.4 65 90-154 67-131 (152)
118 2w6a_A ARF GTPase-activating p 31.6 1.1E+02 0.0038 23.0 5.6 33 101-140 23-55 (63)
119 1yke_B RNA polymerase II holoe 31.4 82 0.0028 26.2 5.5 72 88-159 54-125 (151)
120 3swy_A Cyclic nucleotide-gated 31.3 70 0.0024 22.4 4.3 42 104-155 4-45 (46)
121 3qh9_A Liprin-beta-2; coiled-c 31.2 1.6E+02 0.0055 22.9 6.8 19 117-135 59-77 (81)
122 3a5t_A Transcription factor MA 31.1 15 0.00051 29.6 0.9 54 108-161 40-93 (107)
123 1t2k_D Cyclic-AMP-dependent tr 31.0 83 0.0028 21.9 4.7 33 105-137 22-54 (61)
124 1dh3_A Transcription factor CR 30.7 1.4E+02 0.0047 20.9 6.7 47 108-161 4-50 (55)
125 1gmj_A ATPase inhibitor; coile 30.2 1.5E+02 0.0051 23.2 6.4 11 126-136 51-61 (84)
126 2yko_A LINE-1 ORF1P; RNA-bindi 29.8 42 0.0014 30.3 3.7 49 98-146 6-54 (233)
127 2odv_A Plectin 1, HD1; plakin 29.7 1.1E+02 0.0038 26.7 6.3 101 78-178 101-210 (235)
128 1t6f_A Geminin; coiled-coil, c 29.6 62 0.0021 22.2 3.7 24 97-120 13-36 (37)
129 4emc_A Monopolin complex subun 28.6 43 0.0015 29.6 3.5 39 125-163 19-57 (190)
130 1x8y_A Lamin A/C; structural p 28.3 1.9E+02 0.0064 21.6 8.0 43 66-115 3-45 (86)
131 1lwu_B Fibrinogen beta chain; 28.3 63 0.0022 29.8 4.7 18 144-161 39-56 (323)
132 1gk4_A Vimentin; intermediate 27.7 1.9E+02 0.0064 21.4 8.8 28 66-93 1-28 (84)
133 3t5v_A Nuclear mRNA export pro 27.2 94 0.0032 28.3 5.6 35 74-109 32-66 (316)
134 3m91_A Proteasome-associated A 26.9 73 0.0025 22.6 3.8 20 140-159 30-49 (51)
135 3rrk_A V-type ATPase 116 kDa s 26.6 1.8E+02 0.0061 25.5 7.2 36 128-163 101-139 (357)
136 1nkp_A C-MYC, MYC proto-oncoge 26.5 46 0.0016 25.1 2.9 35 128-162 54-88 (88)
137 3ghg_A Fibrinogen alpha chain; 26.4 1.5E+02 0.005 30.1 7.2 24 141-164 139-163 (562)
138 1ez3_A Syntaxin-1A; three heli 26.4 84 0.0029 23.6 4.4 20 99-118 13-32 (127)
139 3ni0_A Bone marrow stromal ant 26.3 2.6E+02 0.0088 22.6 8.3 57 92-162 33-89 (99)
140 1gd2_E Transcription factor PA 26.2 1E+02 0.0035 22.9 4.7 17 144-160 54-70 (70)
141 2dq3_A Seryl-tRNA synthetase; 26.1 60 0.0021 30.4 4.2 34 128-161 70-103 (425)
142 3efg_A Protein SLYX homolog; x 25.7 1.9E+02 0.0065 21.6 6.2 30 125-161 27-56 (78)
143 1ic2_A Tropomyosin alpha chain 24.9 2E+02 0.007 21.0 8.9 67 68-138 8-74 (81)
144 2ocy_A RAB guanine nucleotide 24.8 2.6E+02 0.0088 23.7 7.5 51 91-141 94-144 (154)
145 3vp9_A General transcriptional 24.7 2.6E+02 0.0088 22.0 7.4 12 146-157 74-85 (92)
146 2eqb_B RAB guanine nucleotide 24.7 55 0.0019 26.1 3.2 20 144-163 23-42 (97)
147 2v4h_A NF-kappa-B essential mo 24.4 2.9E+02 0.0099 22.5 9.8 83 29-122 25-107 (110)
148 1dkg_A Nucleotide exchange fac 23.9 88 0.003 26.8 4.5 16 151-166 75-90 (197)
149 3azd_A Short alpha-tropomyosin 23.5 30 0.001 22.9 1.2 30 127-156 5-34 (37)
150 2dq3_A Seryl-tRNA synthetase; 23.1 45 0.0015 31.2 2.8 65 100-164 32-99 (425)
151 2zqm_A Prefoldin beta subunit 23.0 2.3E+02 0.0078 20.9 6.2 29 125-160 83-111 (117)
152 3mtu_E Head morphogenesis prot 22.6 2.7E+02 0.0092 21.5 6.6 57 88-158 13-69 (77)
153 3q8t_A Beclin-1; autophagy, AT 22.4 2.6E+02 0.009 21.4 9.1 27 109-135 22-48 (96)
154 2aze_B Transcription factor E2 22.3 71 0.0024 25.1 3.4 35 127-161 7-41 (106)
155 2pms_C Pneumococcal surface pr 22.1 2.6E+02 0.0088 23.2 6.8 23 115-137 64-86 (125)
156 2i1j_A Moesin; FERM, coiled-co 22.0 62 0.0021 31.5 3.6 28 134-161 420-447 (575)
157 4dk0_A Putative MACA; alpha-ha 21.7 2.4E+02 0.0082 24.2 6.9 18 142-159 124-141 (369)
158 3fpp_A Macrolide-specific effl 21.6 2.9E+02 0.0098 23.5 7.3 11 148-158 129-139 (341)
159 3caz_A BAR protein; thermo-aci 21.5 3.1E+02 0.011 25.0 7.8 60 96-156 96-158 (294)
160 3iox_A AGI/II, PA; alpha helix 21.5 3.6E+02 0.012 26.8 8.8 65 95-162 41-109 (497)
161 3mov_A Lamin-B1; LMNB1, B-type 21.0 2.9E+02 0.0098 21.3 7.9 28 65-92 11-38 (95)
162 1ses_A Seryl-tRNA synthetase; 21.0 1E+02 0.0036 28.8 4.8 67 98-164 28-95 (421)
163 2l5g_B Putative uncharacterize 21.0 1.1E+02 0.0038 21.4 3.7 30 110-139 7-36 (42)
164 3fpp_A Macrolide-specific effl 20.9 2.9E+02 0.0098 23.5 7.2 36 128-163 116-151 (341)
165 1ci6_A Transcription factor AT 20.9 1.6E+02 0.0055 20.9 4.7 31 106-136 24-54 (63)
166 4ani_A Protein GRPE; chaperone 20.9 1.8E+02 0.0063 25.5 6.0 37 126-162 59-95 (213)
167 3ghg_B Fibrinogen beta chain; 20.7 2.3E+02 0.008 27.8 7.3 41 75-116 83-123 (461)
168 2fxo_A Myosin heavy chain, car 20.6 3.1E+02 0.011 21.5 9.6 18 122-139 65-82 (129)
169 2yy0_A C-MYC-binding protein; 20.5 69 0.0024 22.6 2.7 9 128-136 21-29 (53)
170 3u06_A Protein claret segregat 20.4 1.2E+02 0.0042 28.4 5.1 49 99-161 11-59 (412)
171 1uix_A RHO-associated kinase; 20.3 2.9E+02 0.0098 20.9 7.4 50 67-117 5-54 (71)
172 1rq0_A RF-1, peptide chain rel 20.2 2E+02 0.007 27.1 6.5 78 64-161 4-81 (342)
173 3a7p_A Autophagy protein 16; c 20.1 4.1E+02 0.014 22.6 8.7 37 100-136 70-106 (152)
174 1cii_A Colicin IA; bacteriocin 20.1 3.6E+02 0.012 27.3 8.5 30 63-92 374-403 (602)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.50 E-value=0.015 Score=44.65 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++.+||..-++|+++|...++.+.+++....+++++|..|..+|-.+|+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3678888888999999999989998998889999999999999887754
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.13 E-value=0.05 Score=50.41 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
-+.++.+..+.++++...++.++...+++.+++..++.++.+||...++.++.+.+|++|++.++..
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3445566666777777777778888888888888888888888888888888888888888777643
No 3
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.61 E-value=0.22 Score=37.24 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++..-+.+.+.|.+.+..+...++.....+....++|.-|+-++..+|.+..+..+........|+...+.+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555677889999999999999999999999999999999999999999999999999999999999988765
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.06 E-value=0.8 Score=39.79 Aligned_cols=106 Identities=8% Similarity=0.079 Sum_probs=55.7
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 139 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~L---K~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe 139 (292)
...+|..||..|-++.=.....+|.+..... ..++.+++.+.+.+..+...++.++. +-|..+..++.++.++.
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~---~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES---LVENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4778899998888888777777776544333 33345555555555555555544442 33444444444444333
Q ss_pred hcccchhhHH-HHHHHHHHHHHhh-cCCCCcccc
Q 022776 140 TGSKKWNTEI-SRLTQELELLRKS-RTASDTPVL 171 (292)
Q Consensus 140 ~~~Kkk~eEI-s~L~~ELe~lrks-r~a~~tpvl 171 (292)
....+.-..| ..|-..-+.+|+. .+--+-||-
T Consensus 164 ~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 164 KKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECB
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEee
Confidence 2222222222 1344555666653 333345543
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.92 E-value=0.73 Score=35.58 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=62.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++..-+.+.+.|.+.+..+.+.+..+...+...+++|.-|+-++.-++....+..+........|+...+.++
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567888899999999999999988888999999999999998888888888888888888888877765
No 6
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.26 E-value=0.93 Score=35.30 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++..-+.+.+-|.+.+..+.+.+..+...+..++++|.-|+-++.-+|.+..+..+......+.|+...+.++
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567888899999999999999998899999999999999998888888888888888888887766554
No 7
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=91.25 E-value=0.18 Score=38.02 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
.+|+++..-+.||..|..|+..+. .++++|..|+.+|...++-=
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~-------~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLS-------EKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 457788888899999999988887 89999999998887766543
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.08 E-value=0.83 Score=35.58 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNE--------------KDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqe--------------KDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
.|..-+.-|.+|-+.|+-|+-.+++|...|.. .+.++.+|+.+.+ .|+++|..|-..++
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~-------~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN-------GWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhh
Confidence 45555667888888888888887777755544 6666777776666 78888887766553
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.72 E-value=5.7 Score=31.05 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
+...+...+..+...++.++.....-..++.++...+..+.........++..+..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (284)
T 1c1g_A 70 KLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKV 129 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333444444444443333333444444444444333
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=87.40 E-value=3.2 Score=32.11 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=51.1
Q ss_pred Hhhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 91 SKINSK-RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 91 ~~LK~K-~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++|+.. +..+.|++..++-|....++|-.-.++=++.|.||+.+-+ .++.+|..|++..+.|-+
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~-------~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA-------EVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344443 3467899999999999999999888888888888888777 667888888888887754
No 11
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.79 E-value=1.6 Score=30.98 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+..|-...+.+-+.|-..|..|+.++..++..-.....+|+.|..|+..|+.
T Consensus 6 ~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 6 LERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888888888888888888888888888888764
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.12 E-value=6.8 Score=36.21 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
+..+++.+.+++++..-++.-+.+.+++.+++ .++.+|.+|.++++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~-------~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETS-------LKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 44444445555555444444444444444444 55566666655544
No 13
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.68 E-value=1.6 Score=34.91 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+|...+.+|++.....+.++.+|+..+.+-.........+..+++.|||.|=
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777778999999999999888888888888888888888773
No 14
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.61 E-value=0.92 Score=32.82 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
|...|-......-+.|-+.+..|+.++.+++..-.....+|+.|+.|++.|+.
T Consensus 6 Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 6 KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777888888888888888888888888999999999888874
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.00 E-value=3.3 Score=43.46 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=18.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLS 120 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~ 120 (292)
.++++.+.|++...+.++++.+..+.|+..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666543
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.93 E-value=2.3 Score=30.49 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+..|-...+..-+.|-+.|..|+.++..++..-.....+|+.|..|+..|+.
T Consensus 7 rerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 7 RERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666667777778888888887777777788888888888877764
No 17
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=84.78 E-value=1.4 Score=30.35 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
..++.+|+|+..-..||++|.+|+.+-.+
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35778899999999999999999876543
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.51 E-value=2.2 Score=35.13 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=50.1
Q ss_pred hhhhhhhhhhhhhHHhhhhh--HHHhhhhhHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 022776 69 SAFLDERAFLWNQYKVMEND--LTSKINSKRAEVDRANER---IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSK 143 (292)
Q Consensus 69 sALLaEKdFVWNQ~k~ME~D--yt~~LK~K~~EvaQAnE~---iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~K 143 (292)
..|++.=.+|=.+++-|-+. +. .|-.-.+.|-.|--- .-+++...+.|+...++++.+|..|+.++........
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~-~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYR-RMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666655532 43 333333444333332 2344445556666666777777777777775555555
Q ss_pred chhhHHHHHHHHHHHHH
Q 022776 144 KWNTEISRLTQELELLR 160 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lr 160 (292)
+...++.+|.+++..|.
T Consensus 107 ~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666665555554
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.31 E-value=1.5 Score=31.21 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
..|-...+.+-+.|-+.|..|+.++.+++..-..+..+|+.|..|+..|+
T Consensus 7 ~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 7 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677778888888888888888888888888888888887665
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.11 E-value=12 Score=31.27 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=44.0
Q ss_pred hhhhhHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 84 VMENDLTS---KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 84 ~ME~Dyt~---~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
-+|..++. -|...+++++-.|.-.-.|..+++..++..++ .+..|+.++. .++..+...+.|+|.||
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~---~vqeLqgEI~-------~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK---KVEELEGEIT-------TLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34444443 36777788888888888888888877655533 2444444444 66666667777777776
Q ss_pred hh
Q 022776 161 KS 162 (292)
Q Consensus 161 ks 162 (292)
+-
T Consensus 99 ~~ 100 (121)
T 3mq7_A 99 RE 100 (121)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 21
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=82.08 E-value=2.8 Score=35.25 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 169 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tp 169 (292)
+|+.++.++-....++......=+++|.+++...+ ...+..+++|+.|+..|+..+...-+.+||
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~---~~~~~l~~~i~~l~~~l~~y~e~~r~elf~ 81 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKARAS---QKSAPLLARRKELEDGVATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 34444444444445555555555789999988765 446688999999999999999999888888
No 22
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.90 E-value=11 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+..+++|+..+....+.+...+.++. +.+-.|+.|+-||+.||.
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~-------elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQEST-------EYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC
Confidence 44567788778888888888888887 557788999999999873
No 23
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.45 E-value=2.4 Score=29.37 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
+.++.+...++.+...-..+..++..+++++..+........++|.++...++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666665566666677777777777777777777777777666654
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.07 E-value=4.2 Score=31.13 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 93 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 93 LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
|..-+..+....|.|+....-+++|+..-++||++|..|+.++.+..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455555666666677788888889999999999999875543
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=80.89 E-value=9.4 Score=33.38 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHhhhchhhHHhHHHHHHHHhcCCCCC----Cccchhh----hhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHH
Q 022776 34 KLMLEYTDDQLADFMAWFDLLRQKPKDG----EPKSIEV----SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANE 105 (292)
Q Consensus 34 kl~lElaEDDLeDFka~~~~Lt~elken----SeK~kEV----sALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE 105 (292)
+..++..+.+|.+|+..=--|.++|-.. .++.+++ ..|-.|.+=.=+-|+..-++....+...+.|+.+..+
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788899999999888888775431 1111211 1222222222222333333444445555666666666
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 022776 106 RIEKLLASTEQLQLSNNE 123 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqe 123 (292)
....|...+..|...|++
T Consensus 103 ~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 103 IKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 666666666666666654
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.15 E-value=18 Score=27.73 Aligned_cols=89 Identities=11% Similarity=0.179 Sum_probs=64.8
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN 146 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~ 146 (292)
-+.+|-.+++=.-..+..+|.+ ++..+.+..++.+.+..|+..+..|+...+..-+.+...+.++.+.+-...+..
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEAD----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777666666666654 456677788888888888888888887777666777777777776666666666
Q ss_pred hHHHHHHHHHHHH
Q 022776 147 TEISRLTQELELL 159 (292)
Q Consensus 147 eEIs~L~~ELe~l 159 (292)
.++.-|.+.+|++
T Consensus 86 ~evasLnRriqll 98 (101)
T 3u59_A 86 AEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777788777765
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=77.32 E-value=23 Score=28.07 Aligned_cols=38 Identities=13% Similarity=0.361 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.++|..|+..+.+.-...-....+|+-|.+||..||+.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444332222334455677777777777764
No 28
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.90 E-value=30 Score=29.87 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCC----Cccchhhhhhhhhhhhhhhh
Q 022776 6 VAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG----EPKSIEVSAFLDERAFLWNQ 81 (292)
Q Consensus 6 ~~~E~~~~lEaAk~dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt~elken----SeK~kEVsALLaEKdFVWNQ 81 (292)
+.+.+..+|+=...|.-+-.-.+...-+..-++-.+++++.+.+-+..+..++.+- .+...+|..+-+--.=.=.|
T Consensus 3 m~~~L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 3 SNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788887777765544444443345555555667777777666665554331 23333333332221111122
Q ss_pred HHhh--hhhHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 82 YKVM--ENDLTSKIN---SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 82 ~k~M--E~Dyt~~LK---~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
+... .++|.++-+ .-+.+...+.+.|..+...++.++..-.+....+..+++.+. ....+.+..+..+..++
T Consensus 83 l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~---~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 83 MSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL---ELESLVENEVKNIKETQ 159 (256)
T ss_dssp HHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 2110 123332221 111233333444444444444444443444444444444333 23345567777777777
Q ss_pred HHHHhhcCC---CCc-cccccccccc
Q 022776 157 ELLRKSRTA---SDT-PVLNRCTRIA 178 (292)
Q Consensus 157 e~lrksr~a---~~t-pvl~~ct~~~ 178 (292)
+.++..|.. .+- ++|..=.+|.
T Consensus 160 ~~l~~~r~~l~~~i~~~lL~~Yerir 185 (256)
T 3na7_A 160 QIIFKKKEDLVEKTEPKIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777776642 232 3776666643
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.79 E-value=25 Score=27.13 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT 147 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~e 147 (292)
+.+|-.+++=.-..+..+|.+ ++..+.+..|+.+.|..|+..+.+|+..-+.--+.+...+.++.+-+-...+...
T Consensus 11 m~~lk~e~e~a~drae~~e~~----~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEAD----KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655553 4556677778888888888887777755555555555555566555545555555
Q ss_pred HHHHHHHHHHHH
Q 022776 148 EISRLTQELELL 159 (292)
Q Consensus 148 EIs~L~~ELe~l 159 (292)
++.-|.+.+|+|
T Consensus 87 ev~~L~Rriqll 98 (101)
T 3u1c_A 87 EVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.44 E-value=14 Score=33.71 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=17.7
Q ss_pred hHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022776 81 QYKVMENDLTSKINSKRAEVDRANERIEKLLAS 113 (292)
Q Consensus 81 Q~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~ 113 (292)
|+..++++-. .++.|+.+.+|--+++++.++.
T Consensus 354 ~~~~~~~~~~-~l~~~~~~le~~~~~~~~~~~~ 385 (487)
T 3oja_A 354 QVTLRKQAKI-TLEQKKKALDEQVSNGRRAHAE 385 (487)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666555 5666666655555555544433
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.17 E-value=14 Score=30.04 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc-------hhhHHHHHHHHHHHHHhhcCCCC
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK-------WNTEISRLTQELELLRKSRTASD 167 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kk-------k~eEIs~L~~ELe~lrksr~a~~ 167 (292)
.++..+++-.-.+.-|...++.+...++ ..|..|+..+.+|++.... +..|.+.|..+++.++..+. .
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~--~ 86 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE--D 86 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 4455666666677777777777754444 4556666666655555544 45668889999999988877 4
Q ss_pred cc
Q 022776 168 TP 169 (292)
Q Consensus 168 tp 169 (292)
+|
T Consensus 87 ~~ 88 (120)
T 3i00_A 87 TE 88 (120)
T ss_dssp --
T ss_pred hH
Confidence 54
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.13 E-value=24 Score=26.55 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhh------------hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSN------------NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~n------------qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.|..-..........+..+.+.+..|...+ ....+.|...+.++.++........++|..|..+++.|
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555556666666666665411 12345677777777777777777788888888888777
Q ss_pred Hhhc
Q 022776 160 RKSR 163 (292)
Q Consensus 160 rksr 163 (292)
+...
T Consensus 98 ~~~~ 101 (112)
T 1l8d_A 98 DMEI 101 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.79 E-value=15 Score=31.22 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.....+|++.....+.++.+|+.++++-.........+..++++|||.|
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667889999999888877777777777788888888876
No 34
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.49 E-value=12 Score=29.11 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
|++..+.+-+.+-.....++.++.+++..-.....+|..|+.|++.||..-.
T Consensus 23 NN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 23 NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444444444444445555555555666777788888887776544
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.94 E-value=33 Score=32.80 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+...++++..+..|+.........|..|+..+. ..+..|+.|+..+..|.
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~-------~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHI-------MNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHH
Confidence 455555555555555544444555555555444 44566666666655544
No 36
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.67 E-value=8.1 Score=34.18 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh-------hHHHHHHHHHHHHH
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN-------TEISRLTQELELLR 160 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~-------eEIs~L~~ELe~lr 160 (292)
...+|-.-|++|+..+..|-...+.|+++|..|+.+++..+...+..+ +.|....+=++.|.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 345666778899999988888888999999999999887777765544 44444555555554
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.45 E-value=49 Score=34.81 Aligned_cols=19 Identities=37% Similarity=0.260 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022776 100 VDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQ 118 (292)
+..-++++++|.+.++.+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.03 E-value=27 Score=26.09 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+++-+..|+.+...++...+.....+..+..+++.++.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888887777777777777777777766666654
No 39
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=67.71 E-value=48 Score=27.17 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=42.5
Q ss_pred hhhhHHhhhhhHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH----------HHHHHhhhhccc
Q 022776 78 LWNQYKVMENDLTSKINSKRA----EVDRANERIEKLLASTEQLQLSNNEKDETIAKL----------KTQIAQMETGSK 143 (292)
Q Consensus 78 VWNQ~k~ME~Dyt~~LK~K~~----EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RL----------qaKlaeMe~~~K 143 (292)
|=++|+-||..|-.+.+.-+. |-+.|..+.+.|.+ ..+|+...+++-..|... +..+.+++...+
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~-~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQ-NEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 457888899999855443322 23333333334333 344444444333333322 235667777777
Q ss_pred chhhHHHHHHHHH
Q 022776 144 KWNTEISRLTQEL 156 (292)
Q Consensus 144 kk~eEIs~L~~EL 156 (292)
+.+++|-..+.-+
T Consensus 86 eLd~~ik~qekiI 98 (119)
T 3etw_A 86 KLEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666443
No 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.65 E-value=27 Score=33.32 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=56.2
Q ss_pred hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh--hhh------hhHHHHHHHHHHhhhhcccchhh
Q 022776 76 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSN--NEK------DETIAKLKTQIAQMETGSKKWNT 147 (292)
Q Consensus 76 dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~n--qeK------DdeI~RLqaKlaeMe~~~Kkk~e 147 (292)
||+=.|-+.+.+++..+ +.--.++++.++.+..|++.+....... +.. ...+.++..++.++|+.......
T Consensus 27 d~L~k~e~~V~~~l~~L-E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEI-EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 56666666677777633 5555688999999998888877763221 111 33445666777788887788888
Q ss_pred HHHHHHHHHHHHH
Q 022776 148 EISRLTQELELLR 160 (292)
Q Consensus 148 EIs~L~~ELe~lr 160 (292)
+|..|+..|..+.
T Consensus 106 ~i~~l~~~~~~~~ 118 (409)
T 1m1j_C 106 TIQQLTDMHIMNS 118 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH
Confidence 8888877655544
No 41
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.96 E-value=12 Score=29.35 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
+++=.-+...-++.+++|+.....|+++|.+|+.+..++..+
T Consensus 26 AE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 26 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788889999999999999999999877644443
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.26 E-value=13 Score=43.81 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 022776 97 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 133 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa 133 (292)
+.++++|++..++..+.++++|..-++-+++|..|++
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333344444433
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.20 E-value=26 Score=28.72 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022776 100 VDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQ 118 (292)
...+.+++..+.+.++.|+
T Consensus 98 l~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 44
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=66.20 E-value=5.8 Score=30.62 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 111 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 111 lq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
++.+-+|+....+|.+||.||+.=+-.+-+-.-+.-+=.-+|+++++.++-|
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445667777788888888886532222222223333334455555544433
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.56 E-value=16 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.3
Q ss_pred cccchhhHHHHHHHHHHHHHh
Q 022776 141 GSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 141 ~~Kkk~eEIs~L~~ELe~lrk 161 (292)
...+..+|+++|..+|+.|..
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHH
Confidence 344668899999999988764
No 46
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=65.39 E-value=54 Score=27.03 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=14.4
Q ss_pred hhhhHHhhhhhHHHhhhh
Q 022776 78 LWNQYKVMENDLTSKINS 95 (292)
Q Consensus 78 VWNQ~k~ME~Dyt~~LK~ 95 (292)
|-+.|+-+|.+|-.|.+.
T Consensus 7 V~s~l~~LEaeyq~L~~k 24 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 668899999999966554
No 47
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=64.61 E-value=21 Score=27.09 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+-..|++..+.+-+.+-.....++.++.+++..-.....+|+.|+.|+..||..
T Consensus 19 rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566666666666678888888888888754
No 48
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=64.09 E-value=40 Score=32.49 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
..+++.-+|.+..++.++......+..|..|+.. ....+..|..|++.+..|...-.
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~-------~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEI-------YNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555554444445555555444 34567788888888887766433
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.77 E-value=32 Score=26.67 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.|--++|+.++..+..||-...+=-++-..|..+..+.......++.++.+|.+|...-.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888666666666666666666666666667777777777765543
No 50
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=62.48 E-value=7 Score=36.31 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++++.++|+..+.+|+......+.+|..|+..+..+ +..|..|+..+..|.
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~-------~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVN-------QQFVTRLQQQLVDIR 53 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 455667777777777776666677777777777644 445555555444333
No 51
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=62.13 E-value=16 Score=34.18 Aligned_cols=59 Identities=14% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 166 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~ 166 (292)
+.++.|.+.|++--++=-+.-.+|+..|..-...-.+.+.+|..|+-+|-.|||.|..-
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 44555555555433322222233333333333344466778888888999999988753
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=61.55 E-value=11 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
|-..|.+....+-+.|-+.|..|+.++.+++..-..+..+|..|+.+
T Consensus 13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447777777888888888888888886654444444444444433
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=60.70 E-value=69 Score=27.64 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
++...++.+...+........++..++.+|+.++....
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555666777778888887776543
No 54
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.17 E-value=21 Score=28.25 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+..+..+++++..+|......+.+|.+.-+|.|.|-
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666666655443
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.43 E-value=19 Score=36.31 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=42.6
Q ss_pred HhHHHHHHHHhcCCCCCCccchhhhhhhhhh--------------hhhhhhHH-hhhhhHHHhhhhhHHHHHHHHHHHHH
Q 022776 45 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDER--------------AFLWNQYK-VMENDLTSKINSKRAEVDRANERIEK 109 (292)
Q Consensus 45 eDFka~~~~Lt~elkenSeK~kEVsALLaEK--------------dFVWNQ~k-~ME~Dyt~~LK~K~~EvaQAnE~iqK 109 (292)
.||+..|.-|..++.+.++..+++..+.... +=+.|||- .||.-+. .| .++|+.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIq-yL----------KekVdn 128 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIE-VL----------KRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHH-HH----------HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-HH----------HHHHHH
Confidence 4677777777777666544444444432222 22334444 3444333 22 233444
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
-++++..||....+--.+|.||+..+.
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566555555678888877554
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.65 E-value=14 Score=34.51 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+.+|..++.++.++.....+...+--+|-.+++.|+-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 23 KEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444444444443333444455556666666653
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.18 E-value=8.1 Score=28.92 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 121 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 121 nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
-+-|...|..|+.++.+++........|+..|.+.++.|+
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776666555555555555555555443
No 58
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=56.89 E-value=71 Score=25.23 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.++.++++.=...++.|+..-..|++++.+|+..+..++..-..|...+..|..|...|
T Consensus 43 ~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 43 DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666667777888888888777766665556666665555555544
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.64 E-value=45 Score=32.29 Aligned_cols=90 Identities=13% Similarity=0.240 Sum_probs=47.8
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchh-------hhhhhh-------hhhhhhhhHH-hhhhhHHHhhhhhH
Q 022776 33 LKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIE-------VSAFLD-------ERAFLWNQYK-VMENDLTSKINSKR 97 (292)
Q Consensus 33 ~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kE-------VsALLa-------EKdFVWNQ~k-~ME~Dyt~~LK~K~ 97 (292)
++.++..++ .||+..|+-|..+|.+-++..++ ++.+++ .++-+.|||. -||+-+. .||.
T Consensus 54 Lqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~-~lk~-- 127 (390)
T 1deq_A 54 MKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIE-ILRR-- 127 (390)
T ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-HHHH--
Confidence 344555555 78888888888886664333333 333333 3344455553 3444443 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
.|..-++++..||....+--.+|.||+.++.
T Consensus 128 --------~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 128 --------KVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred --------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233555555555555567888877664
No 60
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=56.61 E-value=25 Score=27.20 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=23.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHH
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI 149 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEI 149 (292)
.+-.||..-..||.+|.+|++-++=---++...++||
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEi 55 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDEL 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHH
Confidence 4455667777899999999987763333333344444
No 61
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=55.28 E-value=24 Score=27.29 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 134 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaK 134 (292)
+++=.-+...-++.++.|+.....|+++|.+|+.+
T Consensus 22 AE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 22 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677888899998889999999999876
No 62
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.94 E-value=17 Score=34.01 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
++-.+++..|.+..++|+....+-..++.+|+.++.+.+...++.-.+|..|+.-+.=...-|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvR 68 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIR 68 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 334445555555555555555555567778888888888888899999998887655444444
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.72 E-value=25 Score=29.45 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
+.....+|++--...+.++.+|+.++++-.........+..+++.|||.|
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555567888999999988877777777777777888888776
No 64
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=54.21 E-value=16 Score=26.19 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
..|.+.+.+||-...+++-||.||++=+.
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 45677888889889999999999987654
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=53.87 E-value=69 Score=24.15 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 94 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 94 K~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
+.++.+..++.+.+++......+|+.....=-.+...|+..+
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql 58 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSM 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444444433333333333343333
No 66
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=53.87 E-value=87 Score=26.98 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=49.0
Q ss_pred HhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022776 36 MLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE 115 (292)
Q Consensus 36 ~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E 115 (292)
++|--++..+|.+.=..-|-.++.+ -.-|=++|-+-+.- |+...+-|++... .-+-.|.+|.+.++
T Consensus 5 laE~K~~~ia~L~~D~~s~~~eleE----------nqeEL~iVgkML~E-EqgKVDQlqKRn~---~HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 5 LVEDKEDEVADLKQDTESLQKQLEE----------NQEELEIVGNMLRE-EQGKVDQLQKRNV---AHQKEIGKLRAELG 70 (167)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-HHhhHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 3455555555555555544433322 22233344332221 3444444443221 11234666666666
Q ss_pred HHhhhhhhhhhHHHHH-----H-----HHHHhhhhcccchhhHHHHHHHHH
Q 022776 116 QLQLSNNEKDETIAKL-----K-----TQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 116 ~LQs~nqeKDdeI~RL-----q-----aKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
.+|.--++-|.-+.|- | .|+-|+|++.|++|.-..-|+.-+
T Consensus 71 ~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~Ti 121 (167)
T 4gkw_A 71 TAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETI 121 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHH
Confidence 6665433333322221 0 166688888888876544444333
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.96 E-value=1.2e+02 Score=27.51 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
++.+.+..+..|....+++++|..+|+.+++.+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 333444444444445555555555555555443
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.75 E-value=80 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 131 LKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 131 LqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
+++++..+|......+.+|.+.-+|.|.
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444433
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.99 E-value=88 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.9
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++.|+|...++.+.+|..++.+++.+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555566666666666666554
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.63 E-value=94 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 132 KTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 132 qaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
.+|+++-+.-.++...||-+|..+|+.++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555556666667777777777665
No 71
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.40 E-value=73 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 122 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+.+++-+..|......++...+.....+..+..+++.++.
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888887777777777777777777764
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=48.83 E-value=1.3e+02 Score=25.92 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
-|+.|-|..|+.-+..|+ .++.+++.....++++.+..-+.|+.|+.|-
T Consensus 86 ~q~se~~~elq~ri~~L~-------~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQ-------EEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444 3455555555555555555555555555543
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=48.80 E-value=1.1e+02 Score=26.39 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=48.1
Q ss_pred hhhHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHH
Q 022776 86 ENDLTSKINSKRAEVDRA----NERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQ 154 (292)
Q Consensus 86 E~Dyt~~LK~K~~EvaQA----nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla-------eMe~~~Kkk~eEIs~L~~ 154 (292)
|.|-+.++|+-..|+..+ -.....|+.-+-.|+..-..=+.++..||+.+. .|.-...+....|.-|..
T Consensus 25 EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~ 104 (168)
T 3o0z_A 25 ESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888777776432 333444555555566555555666777776554 344444556667777888
Q ss_pred HHHHHHhh
Q 022776 155 ELELLRKS 162 (292)
Q Consensus 155 ELe~lrks 162 (292)
||+.+|.+
T Consensus 105 El~~~k~~ 112 (168)
T 3o0z_A 105 EVKHLKHN 112 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 74
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.71 E-value=56 Score=30.59 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLSN-NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~n-qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+.|..-+.+-.++...++.|++..+++...- +.++++...|.+++.++....+..+++...++.+|+.+-.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555544322 2334667788888888877777888888888888876543
No 75
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.80 E-value=88 Score=23.63 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.|..-+...+..+....|.=...-+.=..+|.-|+-.+-+.-...-.....|+-|.+||..||+
T Consensus 21 ~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 21 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444433333333334455555544433333333455678889999999886
No 76
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=47.74 E-value=68 Score=26.64 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCT 175 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct 175 (292)
+.++||....+--+.|..|.++-=.+|.-+++.+-||..|...+..||. .-.-|.|.+-.
T Consensus 59 s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g---KfkKP~LkkVr 118 (133)
T 1j1d_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG---KFKRPTLRRVR 118 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc---ccCCCccCccc
Confidence 5788898899999999999998888999999999999999999999863 23567776543
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.51 E-value=51 Score=38.97 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 135 IAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 135 laeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
++++|....+..++....+++|..+-
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le 2041 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALE 2041 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555553
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.33 E-value=12 Score=29.92 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC---CCCcccc
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT---ASDTPVL 171 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~---a~~tpvl 171 (292)
+++..|+.++..++....++.++|..|+-+|+... .|+ .+-|.||
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-l~Gd~~~~~TKVl 59 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-LQGDYDQSRTKVL 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCeee
Confidence 36677777777777777788899999999998753 333 3344555
No 79
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.13 E-value=51 Score=31.98 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+++..|.+++.++....+..+++...++.+|+.+--
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888887777777777777777777765543
No 80
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=46.61 E-value=15 Score=27.38 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhhhhHHhhhh
Q 022776 67 EVSAFLDERAFLWNQYKVMEN 87 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~ 87 (292)
.+..|-.||||.|+.++-+|-
T Consensus 24 ~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 24 RAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 455677799999999888874
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.52 E-value=96 Score=23.73 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 123 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 123 eKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
-+..+|..|+.++..+..+.-...-+|..|.++++.+|.
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888887777777777778888888887764
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.55 E-value=39 Score=26.96 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.9
Q ss_pred hcccchhhHHHHHHHHHHHHHhh
Q 022776 140 TGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
++..+..+|++.|...|..|++-
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34557788999999999888764
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.10 E-value=86 Score=25.02 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh--c-------------------ccchhhHHHHHHHHHHHHHh
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET--G-------------------SKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~--~-------------------~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+|...+|...++.|...++.=-.+|..|+.++..... + .....++|++|..|+|.||.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777778777753110 0 11356899999999999986
Q ss_pred h
Q 022776 162 S 162 (292)
Q Consensus 162 s 162 (292)
.
T Consensus 90 ~ 90 (100)
T 1go4_E 90 L 90 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=43.91 E-value=1.1e+02 Score=25.84 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=45.1
Q ss_pred chhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhh---HHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 40 TDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMEND---LTSKINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 40 aEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~D---yt~~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
.++||+.--........ -+..|-.+=.-|=|.+|+||.- |..+-..-+..+...+++....-.-.+.
T Consensus 26 ~E~dLEraEERae~aE~----------k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~ 95 (155)
T 2efr_A 26 LKKLLERAEERAELSEG----------KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 95 (155)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555554432 2334444555566777777542 2222222222223333333333333333
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 022776 117 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 157 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe 157 (292)
...+.+.---+|.+|..++. .+++.+-.+.++|.
T Consensus 96 AERsv~kLEk~id~lEd~L~-------~~Kek~~~i~~eLd 129 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELY-------AQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344444445555555554 44444444444444
No 85
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.69 E-value=62 Score=31.52 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+..|.+++.++....+..+++...++.+|+.+-
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777666666677777777777775544
No 86
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.62 E-value=68 Score=30.44 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+++..|.+++.++....+..+++...++.+|+.+-.
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677776666666777777777777766544
No 87
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.35 E-value=29 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 114 TEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 114 ~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
+.+|+...+.||++|..|+.++.+..+-
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777889999999999888755443
No 88
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.18 E-value=28 Score=24.41 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 129 AKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 129 ~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+.|++++.+|+.---+..+.||.|..|=+-||.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456666667777667788889999999888885
No 89
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.16 E-value=1.6e+02 Score=28.73 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=12.5
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 022776 142 SKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 142 ~Kkk~eEIs~L~~ELe~lrk 161 (292)
..+.+..|..|+..+..+..
T Consensus 177 ~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 177 IDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777765543
No 90
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.22 E-value=50 Score=23.14 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=24.8
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 122 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nq 122 (292)
|+...+.+=+.|++...++|.+|+....+|+.++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445666677888888888888888888776543
No 91
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=40.94 E-value=1.1e+02 Score=23.89 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=8.5
Q ss_pred cchhhHHHHHHHHH
Q 022776 143 KKWNTEISRLTQEL 156 (292)
Q Consensus 143 Kkk~eEIs~L~~EL 156 (292)
..++.||++|..+|
T Consensus 64 e~kd~ei~rL~~~l 77 (81)
T 3qh9_A 64 ALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 36666666666554
No 92
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.67 E-value=89 Score=27.24 Aligned_cols=61 Identities=26% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 176 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~tpvl~~ct~ 176 (292)
+.++||....+--+.|..|.++-=.+|.-+++.+-||..|...+..|| +.-.-|.|.+-.-
T Consensus 59 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr---GKFkKP~LkkV~~ 119 (180)
T 1j1e_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR---GKFKRPTLRRVRI 119 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH---hcccccchhhhcc
Confidence 678899999999999999999888889999999999999999999986 3346788888765
No 93
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=40.50 E-value=22 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
..|.+.+++|+....+.-+...|++|++.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfe 90 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444555556666666553
No 94
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.45 E-value=62 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 022776 96 KRAEVDRANERIEKLLASTEQLQL 119 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs 119 (292)
|-.-...|.+=|..|++.++.|+.
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666655553
No 95
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.71 E-value=1.7e+02 Score=24.64 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=56.4
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhcCCCC--CCccchhhhhhhhhh--hhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 022776 33 LKLMLEYTDDQLADFMAWFDLLRQKPKD--GEPKSIEVSAFLDER--AFLWNQYKVMENDLTSKINSKRAEVDRANERIE 108 (292)
Q Consensus 33 ~kl~lElaEDDLeDFka~~~~Lt~elke--nSeK~kEVsALLaEK--dFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iq 108 (292)
..-=||.+++-++-+-+.+.-|..+|+. |+=|+-|++.--+.. +=.=+|++ +++.+||.-+.-+..|--.++
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk----~L~~kLKEAE~RAE~AERsv~ 101 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIK----VLSDKLKEAETRAEFAERSVT 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888888877655 455666776621110 11223333 345567777777778888888
Q ss_pred HHHHHHHHHhhhhh
Q 022776 109 KLLASTEQLQLSNN 122 (292)
Q Consensus 109 KLlq~~E~LQs~nq 122 (292)
+|+..++.|...-.
T Consensus 102 kLEk~id~lEd~L~ 115 (155)
T 2efr_A 102 KLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888874333
No 96
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.18 E-value=1.4e+02 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=18.6
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
...++...-++..++|+.|+..|+.+-..|
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555566777788887777765443
No 97
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.74 E-value=72 Score=28.83 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 122 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+.+..+|..|+++.. ...+||++|+.+.+..+++
T Consensus 181 n~~~~eie~L~~~~~-------~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 181 NVDAFKLESLEAKNR-------ALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TCCTTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Confidence 444556666666665 4455666666666666554
No 98
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=38.14 E-value=23 Score=27.65 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 113 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 113 ~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
....|+..+.+--..+.+||+++..+|+--+..-.=-.-|.-+||.+|.+-+
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt 57 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS 57 (79)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667777778889999999998888777666555678888999998755
No 99
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.12 E-value=73 Score=23.61 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
-.|...+++|+-+..+|+.||.||.+=+.+-
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466677888888999999999998866543
No 100
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=37.76 E-value=75 Score=24.37 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.-|++.+|..+++.||. .+.||- +|.++--.+.+.+|.+|+..+-..+.
T Consensus 5 lEEKv~~LE~sld~LQT-------rfARLL---aEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQT-------RFARIL---AEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45788888888888883 345553 44455556778999999987766543
No 101
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.41 E-value=3e+02 Score=26.81 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=10.1
Q ss_pred hchhhHHhHHHHHHHHh
Q 022776 39 YTDDQLADFMAWFDLLR 55 (292)
Q Consensus 39 laEDDLeDFka~~~~Lt 55 (292)
.-+.+|++.+-.++-|+
T Consensus 97 ~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHh
Confidence 34556666666666663
No 102
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=35.78 E-value=1.2e+02 Score=26.03 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=15.1
Q ss_pred CccchhhhhhhhhhhhhhhhHHhhh
Q 022776 62 EPKSIEVSAFLDERAFLWNQYKVME 86 (292)
Q Consensus 62 SeK~kEVsALLaEKdFVWNQ~k~ME 86 (292)
+--.+|++.|.||.....--|.--+
T Consensus 56 ~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 56 VAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445778888777766654444433
No 103
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.44 E-value=40 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=19.2
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhh
Q 022776 138 METGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 138 Me~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+....+..+.||.+|+.||+.|++.
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334458889999999999999864
No 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.43 E-value=2.2e+02 Score=24.73 Aligned_cols=36 Identities=3% Similarity=-0.128 Sum_probs=18.6
Q ss_pred hhhcchhhhHHHHHHHHhhhchhhHHhHHHHHHHHh
Q 022776 20 DMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR 55 (292)
Q Consensus 20 dl~LGlKerE~sl~kl~lElaEDDLeDFka~~~~Lt 55 (292)
+--|.--+...+-++........|++.+++-+....
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555666666665554443
No 105
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.97 E-value=1.5e+02 Score=22.64 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 99 EVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~-LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
+|.++.+.+..|+..|+. ++... -..=..+++++. ..+.++..|+.+|..++-...+
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p---~~~R~~~~~klr-------~Yk~dL~~lk~elk~~~~~~~~ 99 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIP---PQSRGMYSNRMR-------SYKQEMGKLETDFKRSRIASGP 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC---TTTHHHHHHHHH-------HHHHHHHHHHHHTHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---HHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccc
Confidence 344555555555555543 22221 122345666665 7788888899999888876543
No 106
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.91 E-value=23 Score=31.34 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS 142 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~ 142 (292)
......+..+.+.+.+++||..+++=..+|.+|+.++.++++.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~ 185 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVT 185 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444444455555555555555444444444444444444333
No 107
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.09 E-value=92 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.-.|..|...+=.+.++..+-...|.+|+.++.+.+....+.=.+-..|-..++.+
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777777666777777788888888888876666555555555555544443
No 108
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.93 E-value=88 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=13.7
Q ss_pred HHH-HHhhhhcccchhhHHHHHHHHHHHH
Q 022776 132 KTQ-IAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 132 qaK-laeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.++ +.++....+..+++...++.+|+.+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4444444445555555555555433
No 109
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.88 E-value=93 Score=24.34 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 102 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 102 QAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+=.-+....++.++.|+.....++++|..|+....
T Consensus 36 ~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 36 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677788888777777788877776654
No 110
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.60 E-value=18 Score=26.51 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=9.0
Q ss_pred HHHhhhhcccchhhHHHHHHHHH
Q 022776 134 QIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
+..+|+....+...++..|...|
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.97 E-value=66 Score=22.59 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
.+.++.|...++.|...|.+=..+|..|+.++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887777888887777644
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.95 E-value=97 Score=21.89 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 103 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 103 AnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
-.+.++.|.+.++.|+..|..=..+|..|+.++..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888777767777777666653
No 113
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.59 E-value=1.1e+02 Score=27.38 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
+++=.-+...-++.++.|+.....++++|.+|+.+..++..+
T Consensus 103 AE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 103 AEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566778888889888888999999998766544333
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.55 E-value=2.4e+02 Score=27.33 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-----------HHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT-----------QIAQMETGSKKWNTEISRLTQELELLRKSRTA 165 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa-----------KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a 165 (292)
++...-+.-.+++..+++||..-+.-..+|..++. +..++-...+..+++|..|+.++..+......
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666777777666666666776553 33455566777778888888877777666543
No 115
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.79 E-value=55 Score=28.60 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHH----------HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 99 EVDRANERIEKLLA----------STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 99 EvaQAnE~iqKLlq----------~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
|.++.-|.=.+.++ +.++||....+--+.|..|..+-=.+|.-+++.+-||..|...+..|| +.-.-
T Consensus 32 E~e~k~eeKkkiLaER~kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr---GKfkK 108 (182)
T 1ytz_I 32 EAAAKEVEKQNYLAEHSPPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR---GKFKR 108 (182)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT---CSCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH---hhhcc
Confidence 44444444455555 788899999999999999999888889999999999999999888775 44567
Q ss_pred cccccccc
Q 022776 169 PVLNRCTR 176 (292)
Q Consensus 169 pvl~~ct~ 176 (292)
|.|.+-..
T Consensus 109 P~LkkV~~ 116 (182)
T 1ytz_I 109 PPLRRVRM 116 (182)
T ss_dssp CSSCCCCC
T ss_pred cchhhccc
Confidence 88887665
No 116
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.72 E-value=99 Score=24.13 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRKSRTASDT 168 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~a~~t 168 (292)
++.+-+..-.+.-.||.+|+.+++.||..-.+-||
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eelq~~~~~~~~ 80 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELLQAEGATAVT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhcc
Confidence 44444444455566778888888888766555554
No 117
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.69 E-value=2.3e+02 Score=24.15 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 022776 90 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 154 (292)
Q Consensus 90 t~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ 154 (292)
...|..-+.|..+...+|..|...+++-...++.=-||+.-|+.++..+|.-..+...|...|-+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666665555555444444566666666666665555555555554433
No 118
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.55 E-value=1.1e+02 Score=22.99 Aligned_cols=33 Identities=15% Similarity=0.446 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 022776 101 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 140 (292)
Q Consensus 101 aQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~ 140 (292)
+.+..+||.|.+- |+.=.+|+.++|.++.++.+
T Consensus 23 aaSeAkiQQLmkV-------N~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 23 ATSEAKVQQLMKV-------NSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH-------hHhhhHHHHHHHHHHHHHHh
Confidence 3444556555544 44446889999999885544
No 119
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.43 E-value=82 Score=26.21 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=44.3
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~l 159 (292)
.|...++.--.-+..+.-.|..|...+=.+.++..+-...|.+|+.++.+.+....++-.|-..|-..++.+
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333223333444667777777667777777788899999988877766655555555555555444
No 120
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.33 E-value=70 Score=22.44 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 022776 104 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 155 (292)
Q Consensus 104 nE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~E 155 (292)
.|++.+|..+++.||. ...|| ++|.++--.+.+.+|..|+..
T Consensus 4 Eekv~~Le~~ld~LqT-------r~ArL---lae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQT-------RFARL---LAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 4778888888888883 34444 334445555677788877653
No 121
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.22 E-value=1.6e+02 Score=22.94 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=12.0
Q ss_pred HhhhhhhhhhHHHHHHHHH
Q 022776 117 LQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 117 LQs~nqeKDdeI~RLqaKl 135 (292)
||..-..||.+|.||+.++
T Consensus 59 Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 59 LQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4444456677777777765
No 122
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.11 E-value=15 Score=29.62 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
---++|=.-.|+.-..|-++|..|+.++..+.........|...|..|++.|+.
T Consensus 40 RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 40 RRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666788888888999999999998888888888888888888776653
No 123
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.98 E-value=83 Score=21.93 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 022776 105 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 105 E~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlae 137 (292)
+.++.|...++.|...|..=..+|..|+.++..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666667776666653
No 124
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.72 E-value=1.4e+02 Score=20.89 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 108 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 108 qKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
..++.|-+-.+.+-.-|-.-+..|+.++.. ...|...|..+++.|+.
T Consensus 4 rR~~~NResA~rSR~RKk~~~~~LE~~v~~-------L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 4 VRLMKNREAARESRRKKKEYVKSLENRVAV-------LENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345556666666666666667777777764 44566666666666653
No 125
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.18 E-value=1.5e+02 Score=23.16 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 022776 126 ETIAKLKTQIA 136 (292)
Q Consensus 126 deI~RLqaKla 136 (292)
++|..-+.++.
T Consensus 51 ~el~~h~~ei~ 61 (84)
T 1gmj_A 51 NEISHHAKEIE 61 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 126
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.83 E-value=42 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN 146 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~ 146 (292)
..|+.+-|.|..|-..++++..+.+++...|.+++..+.+++-..+..+
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~N 54 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPN 54 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4578888999999999999998999999999999999988877665544
No 127
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=29.74 E-value=1.1e+02 Score=26.66 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=58.8
Q ss_pred hhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH----HHHH-----HHHHhhhhcccchhhH
Q 022776 78 LWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETI----AKLK-----TQIAQMETGSKKWNTE 148 (292)
Q Consensus 78 VWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI----~RLq-----aKlaeMe~~~Kkk~eE 148 (292)
.|..|-.-|.++...|..-=.-.++-..-+++.......-..--++++.-| ..|. .+...++.+.....+.
T Consensus 101 ~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~e~~ 180 (235)
T 2odv_A 101 EWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKADSM 180 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 599999999988877766322222222222222222222221112221111 1111 1233455555567788
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccccccc
Q 022776 149 ISRLTQELELLRKSRTASDTPVLNRCTRIA 178 (292)
Q Consensus 149 Is~L~~ELe~lrksr~a~~tpvl~~ct~~~ 178 (292)
|..|-...+.|+..+--+.-.|-.||..|.
T Consensus 181 i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~ 210 (235)
T 2odv_A 181 IRLLFNDVQTLKDGRHPQGEQMYRRVYRLH 210 (235)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 999999999999999988888988998864
No 128
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.64 E-value=62 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 022776 97 RAEVDRANERIEKLLASTEQLQLS 120 (292)
Q Consensus 97 ~~EvaQAnE~iqKLlq~~E~LQs~ 120 (292)
+.++.|-.|.|+.|.+.+++|+..
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhh
Confidence 567888899999999999999854
No 129
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.63 E-value=43 Score=29.57 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
|.-|..|+.+..-+-.....++.||+.|..+|++++...
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555444444444488999999999999998765
No 130
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.33 E-value=1.9e+02 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=21.4
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE 115 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E 115 (292)
.||.+|...+.-.=+++.-+|..|. .++.+.+..|..|-..+.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~ 45 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA-------RERDTSRRLLAEKEREMA 45 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 5777888777777788888888776 345555555555443333
No 131
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=28.31 E-value=63 Score=29.80 Aligned_cols=18 Identities=6% Similarity=0.350 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHHHHh
Q 022776 144 KWNTEISRLTQELELLRK 161 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrk 161 (292)
..+++|..|+..+..++.
T Consensus 39 ~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 39 HLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335666666666655543
No 132
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.74 E-value=1.9e+02 Score=21.44 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhhhhhhHHhhhhhHHHhh
Q 022776 66 IEVSAFLDERAFLWNQYKVMENDLTSKI 93 (292)
Q Consensus 66 kEVsALLaEKdFVWNQ~k~ME~Dyt~~L 93 (292)
.|+.+|..-+.-.=+++.-+|..|..-+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~ 28 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEA 28 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777778888887777433
No 133
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.19 E-value=94 Score=28.27 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=24.2
Q ss_pred hhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 022776 74 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEK 109 (292)
Q Consensus 74 EKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqK 109 (292)
.-+|+|+|++-+=+|++ .-.-...++..--|.+..
T Consensus 32 ~y~fi~Dr~RsIRqDlt-vQ~i~~~~~v~v~E~~aR 66 (316)
T 3t5v_A 32 SEGFLWDRMRSIRQDFT-YQNYSGPEAVDCNERIVR 66 (316)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred hhHHHHhhhhhhccCce-eeccCCchHHHHHHHHHH
Confidence 35899999999999998 333344555555555544
No 134
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.87 E-value=73 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=11.0
Q ss_pred hcccchhhHHHHHHHHHHHH
Q 022776 140 TGSKKWNTEISRLTQELELL 159 (292)
Q Consensus 140 ~~~Kkk~eEIs~L~~ELe~l 159 (292)
...++..++|..|..+|+.|
T Consensus 30 ~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 30 ETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666554
No 135
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.63 E-value=1.8e+02 Score=25.47 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHH---HHHHHhhc
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQE---LELLRKSR 163 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~E---Le~lrksr 163 (292)
+..+..++.+++....+.+++|.+|... ++.|...+
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~ 139 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA 139 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 4444444444444445666666666666 66666555
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.47 E-value=46 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
|..|+.+...+.........+...|..+|+.|+.+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~~ 88 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 137
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.41 E-value=1.5e+02 Score=30.08 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=14.3
Q ss_pred cccchhhHHHHHHHHHH-HHHhhcC
Q 022776 141 GSKKWNTEISRLTQELE-LLRKSRT 164 (292)
Q Consensus 141 ~~Kkk~eEIs~L~~ELe-~lrksr~ 164 (292)
.+.+.-.+|.+|+..+. .||.=|+
T Consensus 139 nLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33355667777776664 4555555
No 138
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.36 E-value=84 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022776 99 EVDRANERIEKLLASTEQLQ 118 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQ 118 (292)
+|......|.+|...+++|+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~ 32 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVK 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444
No 139
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.25 E-value=2.6e+02 Score=22.58 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 92 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 92 ~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
-|...+++++--|.-.-.|..+++.-.+..++.-. ++ ++...||..|.++|+.++--
T Consensus 33 ~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~-------~v-------~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 33 SLLQAETQANSCNLTVVTLQESLEKKVSQALEQQA-------RI-------KELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666554444433222 22 35567778888888887743
No 140
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.23 E-value=1e+02 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 022776 144 KWNTEISRLTQELELLR 160 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lr 160 (292)
.....|..|..||+.+|
T Consensus 54 ~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 54 QLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 44566777777776553
No 141
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.10 E-value=60 Score=30.35 Aligned_cols=34 Identities=9% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
...|.+++.++....+..+++...++.+|+.+-.
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 70 TTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555655555555666666666666665543
No 142
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.69 E-value=1.9e+02 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
++.|..|+.-++ +-..+|.+|.+.|..|..
T Consensus 27 E~tIeeLn~~v~-------~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 27 EQALTELSEALA-------DARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455555555555 334556666666666543
No 143
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.87 E-value=2e+02 Score=20.96 Aligned_cols=67 Identities=6% Similarity=0.087 Sum_probs=46.0
Q ss_pred hhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 022776 68 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 138 (292)
Q Consensus 68 VsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeM 138 (292)
+.+|-.+++-+-.++...|.+ ++..+....++.+.+..|+..+.+|+..-+.--+.+...+.++.+.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~----l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEAD----KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777766654 5566677788888888888888888865555555555555555533
No 144
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.82 E-value=2.6e+02 Score=23.67 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 022776 91 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 141 (292)
Q Consensus 91 ~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~ 141 (292)
.++..-+.=|+.|.-+-..+...+++|+..-.+++..|..||..|+.+...
T Consensus 94 sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 94 SLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555667777777777778888887888888888888887755443
No 145
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.70 E-value=2.6e+02 Score=22.03 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHH
Q 022776 146 NTEISRLTQELE 157 (292)
Q Consensus 146 ~eEIs~L~~ELe 157 (292)
.+||.+|+.|||
T Consensus 74 EeEI~rLr~eLe 85 (92)
T 3vp9_A 74 EEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 146
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.70 E-value=55 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=10.4
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 022776 144 KWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrksr 163 (292)
.++.++.+|..+|+.-+..|
T Consensus 23 ~~~~e~~~L~~~l~eE~~~R 42 (97)
T 2eqb_B 23 DRDDEVKRLREDIAKENELR 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444
No 147
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.37 E-value=2.9e+02 Score=22.53 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhchhhHHhHHHHHHHHhcCCCCCCccchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 022776 29 EASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE 108 (292)
Q Consensus 29 E~sl~kl~lElaEDDLeDFka~~~~Lt~elkenSeK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iq 108 (292)
++.|++-.+..+|.-|++=+.-|+.|..++.. ++. -+-.=-++=-|..+-..||- .-.+.-+.+++.++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q---~~~----~lE~I~vLkaQv~IY~~DF~----aERadREkl~~eKe 93 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ---HKI----VMETVPVLKAQADIYKADFQ----AERHAREKLVEKKE 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHc----cchhhHHHHHhHHH
Confidence 55666666666666666666666666543211 111 11122344457778788876 23344556777788
Q ss_pred HHHHHHHHHhhhhh
Q 022776 109 KLLASTEQLQLSNN 122 (292)
Q Consensus 109 KLlq~~E~LQs~nq 122 (292)
.|+..++.||..++
T Consensus 94 ~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 94 YLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
No 148
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.89 E-value=88 Score=26.81 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhcCCC
Q 022776 151 RLTQELELLRKSRTAS 166 (292)
Q Consensus 151 ~L~~ELe~lrksr~a~ 166 (292)
+..+|.+.+++.-...
T Consensus 75 R~~ke~~~~~~~a~~~ 90 (197)
T 1dkg_A 75 RTELDIEKAHKFALEK 90 (197)
T ss_dssp HHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554443
No 149
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.48 E-value=30 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
.|.-++.||..|+.......+++..|.++|
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666655544
No 150
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.12 E-value=45 Score=31.23 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKT---QIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqa---KlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
+...-+.-.+++..+++||..-+.-..+|..++. +..++-...+..+++|..|+.++..+.....
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666655555555655432 2334444555666777777777766665544
No 151
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.03 E-value=2.3e+02 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 022776 125 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 160 (292)
Q Consensus 125 DdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lr 160 (292)
+.+|.+|+.++. ....++..|...|+.+-
T Consensus 83 e~~i~~le~~~~-------~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 83 EVRLNALERQEK-------KLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 444555555554 45556666666666554
No 152
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.58 E-value=2.7e+02 Score=21.49 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=33.8
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 022776 88 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 158 (292)
Q Consensus 88 Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~ 158 (292)
|.-++|..-+.+--.-+|..|.|..+---.+ -+|.+|++++. ..+++...+.++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E-------KTIDDLEDkL~-------~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 13 DILNKLLDPELAQSERTEALQQLRVNYGSFV-------SEYNDLEEKVA-------HAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHTTCC---CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HhhHHHHHHHHHHHH
Confidence 4445666655555555677776666544333 47888998885 556666666666643
No 153
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.43 E-value=2.6e+02 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 022776 109 KLLASTEQLQLSNNEKDETIAKLKTQI 135 (292)
Q Consensus 109 KLlq~~E~LQs~nqeKDdeI~RLqaKl 135 (292)
.|++.++.|......=|.+|..++++.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444443344444444444433
No 154
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.33 E-value=71 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 127 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 127 eI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
.+..|++++..++..-+..|+-|..+.+.|..|..
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666655556666666666666666653
No 155
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.06 E-value=2.6e+02 Score=23.17 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=11.3
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHh
Q 022776 115 EQLQLSNNEKDETIAKLKTQIAQ 137 (292)
Q Consensus 115 E~LQs~nqeKDdeI~RLqaKlae 137 (292)
++||-..++=+.+|..|+.++..
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44554444444555555555543
No 156
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.99 E-value=62 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=3.3
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 134 QIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 134 KlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
+++.|+.....+.+|-.+|..+|+.+|-
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARR 447 (575)
T ss_dssp ----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666665554
No 157
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.73 E-value=2.4e+02 Score=24.21 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=7.4
Q ss_pred ccchhhHHHHHHHHHHHH
Q 022776 142 SKKWNTEISRLTQELELL 159 (292)
Q Consensus 142 ~Kkk~eEIs~L~~ELe~l 159 (292)
......++..++..|+.+
T Consensus 124 ~~~a~a~~~~~~~~l~~~ 141 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQA 141 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 158
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.57 E-value=2.9e+02 Score=23.51 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 022776 148 EISRLTQELEL 158 (292)
Q Consensus 148 EIs~L~~ELe~ 158 (292)
++..++.+|+.
T Consensus 129 ~l~~~~a~l~~ 139 (341)
T 3fpp_A 129 QIGTIDAQIKR 139 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 159
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.54 E-value=3.1e+02 Score=25.04 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 022776 96 KRAEVDRANERIEKLLASTEQLQLSNNEKDE---TIAKLKTQIAQMETGSKKWNTEISRLTQEL 156 (292)
Q Consensus 96 K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDd---eI~RLqaKlaeMe~~~Kkk~eEIs~L~~EL 156 (292)
--.|+++--|+|||..|.+|.|...--+-|+ .-+--+.||.++|-.. +.-+.|.+=.+.|
T Consensus 96 hgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~-KdSeKI~RNQsKL 158 (294)
T 3caz_A 96 HGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKN-KDQERIERNQQKF 158 (294)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhcc-chHHHHHHhHHHh
Confidence 3468899999999999999987644333222 2223355666666544 2334454444443
No 160
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.49 E-value=3.6e+02 Score=26.84 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 95 SKRAEVDRANERIEKLLASTEQLQL----SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 95 ~K~~EvaQAnE~iqKLlq~~E~LQs----~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
.|.+++.+.||+|++ .++..+. .-..+..++..-+.++++-+...+.++++..+..++|..+-+-
T Consensus 41 a~n~~i~aeNeaikk---rNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 41 AANAALTAENTAIKK---RNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456666666653 2222221 1222455666677778888888888999998889999887773
No 161
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.05 E-value=2.9e+02 Score=21.26 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=17.4
Q ss_pred chhhhhhhhhhhhhhhhHHhhhhhHHHh
Q 022776 65 SIEVSAFLDERAFLWNQYKVMENDLTSK 92 (292)
Q Consensus 65 ~kEVsALLaEKdFVWNQ~k~ME~Dyt~~ 92 (292)
...++.|...+.-+=+++.-+|..|..-
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e 38 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKE 38 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888999999988743
No 162
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.97 E-value=1e+02 Score=28.79 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-HHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 022776 98 AEVDRANERIEKLLASTEQLQLSNNEKDETIAK-LKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 164 (292)
Q Consensus 98 ~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~R-LqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr~ 164 (292)
.++...-+.-.+++..+++||..-+.-..+|.. -..+..++-...+..+++|..|+.++..+.....
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777666666666653 1123444555566677777777777776665554
No 163
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.97 E-value=1.1e+02 Score=21.39 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 022776 110 LLASTEQLQLSNNEKDETIAKLKTQIAQME 139 (292)
Q Consensus 110 Llq~~E~LQs~nqeKDdeI~RLqaKlaeMe 139 (292)
|+|.++..-..-.+-...|..||.++.++|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444555555554443
No 164
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.95 E-value=2.9e+02 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 022776 128 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 163 (292)
Q Consensus 128 I~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrksr 163 (292)
+...++.+...+........++..++..|+.++...
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444455667777777777665443
No 165
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.90 E-value=1.6e+02 Score=20.90 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 106 RIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 106 ~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
.++.|.+.++.|+..|.+=-.+|..|+.++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655566666666554
No 166
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.88 E-value=1.8e+02 Score=25.48 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 022776 126 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 162 (292)
Q Consensus 126 deI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrks 162 (292)
+++..|++++.+++....++++...++..|.+++|+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666667777777777777777663
No 167
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.67 E-value=2.3e+02 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=24.4
Q ss_pred hhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022776 75 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ 116 (292)
Q Consensus 75 KdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~ 116 (292)
+||+=+|-+....|+- -|+..=.++++.+..|..+++.+..
T Consensus 83 ad~L~kye~~V~~dl~-~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 83 QEALLQQERPIRNSVD-ELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhcccchhhHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566777777766665 4555555666666665555544433
No 168
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.60 E-value=3.1e+02 Score=21.52 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=8.0
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 022776 122 NEKDETIAKLKTQIAQME 139 (292)
Q Consensus 122 qeKDdeI~RLqaKlaeMe 139 (292)
.+..+...+|.+.-.+++
T Consensus 65 ~e~EE~~~~L~~~k~eLe 82 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLE 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344445555544333333
No 169
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.52 E-value=69 Score=22.55 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 022776 128 IAKLKTQIA 136 (292)
Q Consensus 128 I~RLqaKla 136 (292)
+..|+.++.
T Consensus 21 ~eaLk~E~~ 29 (53)
T 2yy0_A 21 IELLRLELA 29 (53)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.37 E-value=1.2e+02 Score=28.42 Aligned_cols=49 Identities=31% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 022776 99 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 161 (292)
Q Consensus 99 EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~Kkk~eEIs~L~~ELe~lrk 161 (292)
|+....|.+.+|++.+++++ .++..+++++.+.+ .+--+|-.+++.|+-
T Consensus 11 el~~~~~~~~~l~~~~~~~~-------~~~~~~~~~l~~~~-------~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQA-------AELETCKEQLFQSN-------MERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHhCC
Confidence 44444444455555554444 34445555565433 333445555566553
No 171
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.28 E-value=2.9e+02 Score=20.93 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=29.4
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022776 67 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL 117 (292)
Q Consensus 67 EVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~L 117 (292)
.|.-|..|++=+-+|++-++.+|. .++..++++..-.++..+.+++=.-|
T Consensus 5 ~v~~l~~E~eel~~klk~~~ee~~-~~~eee~~~~~~k~~lek~L~~E~~L 54 (71)
T 1uix_A 5 DVANLANEKEELNNKLKEAQEQLS-RLKDEEISAAAIKAQFEKQLLTERTL 54 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777788888888877 35554454444444444444433333
No 172
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=20.24 E-value=2e+02 Score=27.05 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=40.8
Q ss_pred cchhhhhhhhhhhhhhhhHHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 022776 64 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSK 143 (292)
Q Consensus 64 K~kEVsALLaEKdFVWNQ~k~ME~Dyt~~LK~K~~EvaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKlaeMe~~~K 143 (292)
.-.|+..++..-+| || +-...|-+...++..--+....+. .++.++....+-+|. +.+.+
T Consensus 4 r~~el~~~~~~p~~--d~------~~~~~~~ke~~~l~~~v~~~~~~~-~~~~~~~l~~e~~D~-----------~~e~~ 63 (342)
T 1rq0_A 4 KKKEIEKLLARPDL--TP------EQMKNYGMEYAKIEEIENITNRIK-ETQEFIELLREEGEN-----------ELEIE 63 (342)
T ss_dssp TTTHHHHHHHSSCC--CH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTTTTTTC-----------CSCHH
T ss_pred HHHHHHHHhhCCCC--CH------HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhcCCH-----------HHHHH
Confidence 44577777777777 43 112233333344444455555555 555555544332122 22233
Q ss_pred chhhHHHHHHHHHHHHHh
Q 022776 144 KWNTEISRLTQELELLRK 161 (292)
Q Consensus 144 kk~eEIs~L~~ELe~lrk 161 (292)
...+++..|+.+|+.|-.
T Consensus 64 ~l~~~l~~le~~l~~lL~ 81 (342)
T 1rq0_A 64 KYEKELDQLYQELLFLLS 81 (342)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 455666777777777764
No 173
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.10 E-value=4.1e+02 Score=22.64 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 022776 100 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 136 (292)
Q Consensus 100 vaQAnE~iqKLlq~~E~LQs~nqeKDdeI~RLqaKla 136 (292)
+...+.....|...+..|...-.+|..-+..|++++.
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~ 106 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444
No 174
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.07 E-value=3.6e+02 Score=27.32 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=23.9
Q ss_pred ccchhhhhhhhhhhhhhhhHHhhhhhHHHh
Q 022776 63 PKSIEVSAFLDERAFLWNQYKVMENDLTSK 92 (292)
Q Consensus 63 eK~kEVsALLaEKdFVWNQ~k~ME~Dyt~~ 92 (292)
.+..-||++-.|..-.|+++..|++.+.+.
T Consensus 374 slqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 374 SARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888999999998888764
Done!