Your job contains 1 sequence.
>022777
MAAAAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVI
SEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE
EDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN
LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP
ETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022777
(292 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204644 - symbol:AT1G30630 species:3702 "Arabi... 1235 9.9e-126 1
TAIR|locus:2044792 - symbol:AT2G34840 species:3702 "Arabi... 1209 5.7e-123 1
UNIPROTKB|Q5ZIK9 - symbol:COPE "Coatomer subunit epsilon"... 581 2.0e-56 1
UNIPROTKB|G3V8Q1 - symbol:Cope "Coatomer protein complex,... 568 4.8e-55 1
MGI|MGI:1891702 - symbol:Cope "coatomer protein complex, ... 566 7.8e-55 1
UNIPROTKB|E2RAT6 - symbol:COPE "Uncharacterized protein" ... 564 1.3e-54 1
UNIPROTKB|O14579 - symbol:COPE "Coatomer subunit epsilon"... 564 1.3e-54 1
UNIPROTKB|F1S7E0 - symbol:LOC100525632 "Uncharacterized p... 561 2.6e-54 1
UNIPROTKB|Q28104 - symbol:COPE "Coatomer subunit epsilon"... 551 3.0e-53 1
ZFIN|ZDB-GENE-041114-59 - symbol:cope "coatomer protein c... 547 8.0e-53 1
UNIPROTKB|F1RXG7 - symbol:LOC100525632 "Uncharacterized p... 343 7.4e-40 2
DICTYBASE|DDB_G0267950 - symbol:copE "coatomer protein co... 421 1.8e-39 1
FB|FBgn0027496 - symbol:epsilonCOP "epsilonCOP" species:7... 362 3.2e-33 1
ASPGD|ASPL0000054697 - symbol:AN0665 species:162425 "Emer... 268 1.0e-25 2
WB|WBGene00009732 - symbol:F45G2.4.2 species:6239 "Caenor... 289 1.8e-25 1
RGD|1306785 - symbol:Cope "coatomer protein complex, subu... 265 6.1e-23 1
POMBASE|SPBC24C6.05 - symbol:sec28 "coatomer epsilon subu... 130 4.2e-06 1
SGD|S000001338 - symbol:SEC28 "Epsilon-COP subunit of the... 120 6.6e-05 1
>TAIR|locus:2204644 [details] [associations]
symbol:AT1G30630 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA;ISS] [GO:0008565 "protein transporter activity"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005774 GO:GO:0005198 GO:GO:0015031 Gene3D:1.25.40.10
GO:GO:0030126 EMBL:AC007060 GO:GO:0006890 EMBL:AF348588
EMBL:AF370325 EMBL:AY063113 EMBL:AY087474 IPI:IPI00518170
PIR:F86431 RefSeq:NP_174351.1 UniGene:At.21622
ProteinModelPortal:Q9SA78 SMR:Q9SA78 STRING:Q9SA78 PaxDb:Q9SA78
PRIDE:Q9SA78 DNASU:839943 EnsemblPlants:AT1G30630.1 GeneID:839943
KEGG:ath:AT1G30630 TAIR:At1g30630 eggNOG:NOG289253
HOGENOM:HOG000205825 InParanoid:Q9SA78 OMA:NLAMGGE PhylomeDB:Q9SA78
ProtClustDB:CLSN2682314 Genevestigator:Q9SA78 PANTHER:PTHR10805
Uniprot:Q9SA78
Length = 292
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 234/292 (80%), Positives = 265/292 (90%)
Query: 1 MAAAAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVI 60
MA+ A PDHLFNLRN+FYLGAYQAAINNS++ NL +D VERDCLV+R+YIALGSYQLVI
Sbjct: 1 MASMAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVI 60
Query: 61 SEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120
SEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+NA +RLIAG IFMHE
Sbjct: 61 SEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHE 120
Query: 121 EDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180
EDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLN
Sbjct: 121 EDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLN 180
Query: 181 LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXP 240
LAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE P
Sbjct: 181 LAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDP 240
Query: 241 ETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
ETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A
Sbjct: 241 ETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292
>TAIR|locus:2044792 [details] [associations]
symbol:AT2G34840 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA;ISS] [GO:0008565 "protein transporter activity"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005198 GO:GO:0015031
Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890 EMBL:AC004238
eggNOG:NOG289253 HOGENOM:HOG000205825 ProtClustDB:CLSN2682314
PANTHER:PTHR10805 EMBL:AY075627 EMBL:AY142051 IPI:IPI00525188
PIR:T00466 RefSeq:NP_181030.1 UniGene:At.37752
ProteinModelPortal:O64748 SMR:O64748 STRING:O64748 PaxDb:O64748
PRIDE:O64748 DNASU:818049 EnsemblPlants:AT2G34840.1 GeneID:818049
KEGG:ath:AT2G34840 TAIR:At2g34840 InParanoid:O64748 OMA:TWAELIC
PhylomeDB:O64748 Genevestigator:O64748 GermOnline:AT2G34840
Uniprot:O64748
Length = 293
Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 232/291 (79%), Positives = 260/291 (89%)
Query: 2 AAAAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVIS 61
A A PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVIS
Sbjct: 3 AMGAGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVIS 62
Query: 62 EIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE 121
EIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D IG+N TLRLIAGIIFMHEE
Sbjct: 63 EIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEE 122
Query: 122 DYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNL 181
DYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNL
Sbjct: 123 DYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNL 182
Query: 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPE 241
AVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE PE
Sbjct: 183 AVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPE 242
Query: 242 TLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
TLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA
Sbjct: 243 TLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293
>UNIPROTKB|Q5ZIK9 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9031 "Gallus
gallus" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890
eggNOG:NOG289253 HOGENOM:HOG000205825 PANTHER:PTHR10805 OMA:TWAELIC
CTD:11316 GeneTree:ENSGT00390000003478 HOVERGEN:HBG002201
OrthoDB:EOG43XV42 EMBL:AJ720775 IPI:IPI00575570
RefSeq:NP_001006339.1 UniGene:Gga.6968 ProteinModelPortal:Q5ZIK9
STRING:Q5ZIK9 PRIDE:Q5ZIK9 Ensembl:ENSGALT00000004991 GeneID:420117
KEGG:gga:420117 InParanoid:Q5ZIK9 NextBio:20823077 Uniprot:Q5ZIK9
Length = 308
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 120/287 (41%), Positives = 182/287 (63%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N+FY+GAYQAAIN + + P+ ERD ++RSYIA Y +V+ EI +
Sbjct: 17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKAN 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
A+ LQAV++ A YLS+ +++ ++ L + ++ +N T L+A I+ H+++ + A
Sbjct: 77 ASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG
Sbjct: 137 LRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G +D+AEG PETL N
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINF 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 289
VV S H GK T+RYL+QLK H +H +K + + F+R A+Q
Sbjct: 257 VVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQ 303
>UNIPROTKB|G3V8Q1 [details] [associations]
symbol:Cope "Coatomer protein complex, subunit epsilon
(Predicted), isoform CRA_c" species:10116 "Rattus norvegicus"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:CH474031 UniGene:Rn.229750
PRIDE:G3V8Q1 Ensembl:ENSRNOT00000027381 Uniprot:G3V8Q1
Length = 308
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 121/287 (42%), Positives = 176/287 (61%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S + ++S + L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAVRMFAEYLASENRRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G +E A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG
Sbjct: 137 LRTLHQGDGLECTAMTIQILLKLDRLDLARKELKRMQEQDEDATLTQLATAWVNLAMGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+QEAY IFQ+ ++K T L+LNG+A C G ++ AEG PETL NL
Sbjct: 197 KLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 289
+V S H GK T+RYL+QLK H H +K + + F+R ALQ
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303
>MGI|MGI:1891702 [details] [associations]
symbol:Cope "coatomer protein complex, subunit epsilon"
species:10090 "Mus musculus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0030126 "COPI
vesicle coat" evidence=IEA] [GO:0030137 "COPI-coated vesicle"
evidence=IDA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 MGI:MGI:1891702 EMBL:U89427 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0030137 GO:GO:0030126
GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE
PANTHER:PTHR10805 CTD:11316 GeneTree:ENSGT00390000003478
HOVERGEN:HBG002201 OrthoDB:EOG43XV42 EMBL:AB039837 EMBL:BC009170
EMBL:BC083336 IPI:IPI00130840 RefSeq:NP_067513.1 UniGene:Mm.28668
ProteinModelPortal:O89079 SMR:O89079 STRING:O89079
PhosphoSite:O89079 REPRODUCTION-2DPAGE:O89079 PaxDb:O89079
PRIDE:O89079 Ensembl:ENSMUST00000066469 GeneID:59042 KEGG:mmu:59042
UCSC:uc009lzx.1 InParanoid:O89079 NextBio:314654 Bgee:O89079
CleanEx:MM_COPE Genevestigator:O89079 GermOnline:ENSMUSG00000055681
Uniprot:O89079
Length = 308
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 121/287 (42%), Positives = 175/287 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S + ++S + L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G +E A+ +QI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAVGG
Sbjct: 137 LRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+QEAY IFQ+ ++K T L+LNG+A C G ++ AEG PETL NL
Sbjct: 197 KLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 289
+V S H GK T+RYL+QLK H H +K + + F+R A+Q
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQ 303
>UNIPROTKB|E2RAT6 [details] [associations]
symbol:COPE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805 CTD:11316
GeneTree:ENSGT00390000003478 EMBL:AAEX03012274 RefSeq:XP_865271.2
ProteinModelPortal:E2RAT6 Ensembl:ENSCAFT00000023078 GeneID:476663
KEGG:cfa:476663 NextBio:20852280 Uniprot:E2RAT6
Length = 308
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 119/289 (41%), Positives = 174/289 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL++ ++S + L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAVRMFAEYLANDSQRDSIVVELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAVGG
Sbjct: 137 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEG PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
+V S H GK T+RYL+QLK H H +K + + F+R + A
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
>UNIPROTKB|O14579 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9606 "Homo
sapiens" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=ISS] [GO:0030126
"COPI vesicle coat" evidence=ISS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=TAS] [GO:0016044 "cellular membrane
organization" evidence=TAS] [GO:0048205 "COPI coating of Golgi
vesicle" evidence=TAS] [GO:0005794 "Golgi apparatus" evidence=IDA]
Reactome:REACT_11123 InterPro:IPR006822 InterPro:IPR011990
Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005829 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0006891 EMBL:CH471106
GO:GO:0030126 GO:GO:0048205 GO:GO:0006890 EMBL:AC005197
eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
CTD:11316 HOVERGEN:HBG002201 OrthoDB:EOG43XV42 EMBL:AJ131182
EMBL:AJ249366 EMBL:AL136928 EMBL:AK126476 EMBL:AK315281
EMBL:CR456886 EMBL:AC002985 EMBL:BC003155 EMBL:BC007250
EMBL:BC017285 EMBL:BM454494 IPI:IPI00399318 IPI:IPI00399319
IPI:IPI00465132 RefSeq:NP_009194.2 RefSeq:NP_955474.1
RefSeq:NP_955476.1 UniGene:Hs.10326 ProteinModelPortal:O14579
SMR:O14579 IntAct:O14579 MINT:MINT-5000768 STRING:O14579
PhosphoSite:O14579 OGP:O14579 PaxDb:O14579 PRIDE:O14579 DNASU:11316
Ensembl:ENST00000262812 Ensembl:ENST00000349893
Ensembl:ENST00000351079 GeneID:11316 KEGG:hsa:11316 UCSC:uc002nkk.3
GeneCards:GC19M019010 HGNC:HGNC:2234 HPA:CAB034345 MIM:606942
neXtProt:NX_O14579 PharmGKB:PA26750 InParanoid:O14579
PhylomeDB:O14579 ChiTaRS:COPE GenomeRNAi:11316 NextBio:42987
ArrayExpress:O14579 Bgee:O14579 CleanEx:HS_COPE
Genevestigator:O14579 GermOnline:ENSG00000105669 Uniprot:O14579
Length = 308
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 117/289 (40%), Positives = 176/289 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A + +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+ ++S ++ L +S +N T L+A I++H+++ + A
Sbjct: 77 SAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG
Sbjct: 137 LRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEG PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
+V S H GK T+RYL+QLK H H +K + + F+R + A
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
>UNIPROTKB|F1S7E0 [details] [associations]
symbol:LOC100525632 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:CU640483 RefSeq:XP_003123584.1
UniGene:Ssc.81882 Ensembl:ENSSSCT00000027115 GeneID:100525632
KEGG:ssc:100525632 Uniprot:F1S7E0
Length = 308
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 117/289 (40%), Positives = 175/289 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+A + +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQA+++ A YL+S +++ ++ L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAVGG
Sbjct: 137 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEG PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
+V S H GK T+RYL+QLK H H +K + + F+R + A
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYA 305
>UNIPROTKB|Q28104 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9913 "Bos
taurus" [GO:0005515 "protein binding" evidence=IPI] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA]
[GO:0030126 "COPI vesicle coat" evidence=IDA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 GO:GO:0015031 Gene3D:1.25.40.10
GO:GO:0006891 GO:GO:0030126 GO:GO:0006890 PDB:3MKR PDBsum:3MKR
eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
EMBL:X76980 EMBL:AB042117 EMBL:BT029899 EMBL:BC109963
IPI:IPI00696888 PIR:I46019 RefSeq:NP_788846.1 UniGene:Bt.4141
ProteinModelPortal:Q28104 IntAct:Q28104 STRING:Q28104 PRIDE:Q28104
Ensembl:ENSBTAT00000001071 GeneID:338085 KEGG:bta:338085 CTD:11316
GeneTree:ENSGT00390000003478 HOVERGEN:HBG002201 InParanoid:Q28104
OrthoDB:EOG43XV42 EvolutionaryTrace:Q28104 NextBio:20812532
ArrayExpress:Q28104 Uniprot:Q28104
Length = 308
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 117/289 (40%), Positives = 174/289 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S +++ ++ L +S +N T L+A I+ ++++ + A
Sbjct: 77 SAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW++LA GG
Sbjct: 137 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEG PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
VV S H GK T+RYL+QLK H H +K + + F+R + A
Sbjct: 257 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 305
>ZFIN|ZDB-GENE-041114-59 [details] [associations]
symbol:cope "coatomer protein complex, subunit
epsilon" species:7955 "Danio rerio" [GO:0005198 "structural
molecule activity" evidence=IEA] [GO:0006890 "retrograde
vesicle-mediated transport, Golgi to ER" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478
ZFIN:ZDB-GENE-041114-59 GO:GO:0005198 Gene3D:1.25.40.10
GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825
PANTHER:PTHR10805 CTD:11316 HOVERGEN:HBG002201 OrthoDB:EOG43XV42
EMBL:BC085575 IPI:IPI00495409 RefSeq:NP_001007365.1
UniGene:Dr.30701 ProteinModelPortal:Q5U3E8 STRING:Q5U3E8
PRIDE:Q5U3E8 GeneID:492492 KEGG:dre:492492 InParanoid:Q5U3E8
NextBio:20865054 ArrayExpress:Q5U3E8 Bgee:Q5U3E8 Uniprot:Q5U3E8
Length = 300
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 116/289 (40%), Positives = 172/289 (59%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + P+ E++ +YR+YIA Y +V+ +I S
Sbjct: 9 DELFDVKNAFYIGSYQHCINEAQKVKTSGPEKESEKNIFLYRAYIAQRKYGVVLDDIKPS 68
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+ LQAV++ A YLSS +++ ++ L + +S SN T L+A I++HE + + A
Sbjct: 69 STEELQAVRMFAEYLSSEGKRDAIVADLDKKISKSVDVSNTTFLLMAASIYLHEMNTDAA 128
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW+NLA+GG
Sbjct: 129 LRTLHQGESLECMAMTVQILLKLDRVDMARKELKKMQDQDEDATLTQLATAWVNLAIGGE 188
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANL 246
K+Q+A+ IFQ+ S+KY T L+LNG+A M +DEAE PETL NL
Sbjct: 189 KLQDAFYIFQEMSDKYSPTLLLLNGQAASHMAQNKWDEAESVLQDALDKDSGHPETLINL 248
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
+V + H GK T+RYL+QLK H H +K + F+R + A
Sbjct: 249 IVLTQHMGKPFEVTNRYLSQLKDAHKSHPFIKDYLAKKNEFDRLVMQYA 297
>UNIPROTKB|F1RXG7 [details] [associations]
symbol:LOC100525632 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 Pfam:PF04733 PIRSF:PIRSF016478
GO:GO:0005198 GO:GO:0030126 GO:GO:0006890 PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 OMA:LERYPNE EMBL:CU640428
RefSeq:XP_003135361.1 UniGene:Ssc.82644 Ensembl:ENSSSCT00000013753
GeneID:100521239 KEGG:ssc:100521239 Uniprot:F1RXG7
Length = 256
Score = 343 (125.8 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 70/180 (38%), Positives = 112/180 (62%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+ + +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLEQRKFGVVLEEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
++ LQA+++ A YL+S +++ ++ L +S +N T L+A I+ H+++ + A
Sbjct: 77 SSPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAV S
Sbjct: 137 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVDSS 196
Score = 98 (39.6 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 240 PETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
PET NL+V S H GK T+RYL+QLK H H +K + + F+R + A
Sbjct: 198 PETPINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYA 253
>DICTYBASE|DDB_G0267950 [details] [associations]
symbol:copE "coatomer protein complex epsilon
subunit" species:44689 "Dictyostelium discoideum" [GO:0030126 "COPI
vesicle coat" evidence=IEA;ISS] [GO:0006890 "retrograde
vesicle-mediated transport, Golgi to ER" evidence=IEA] [GO:0005198
"structural molecule activity" evidence=IEA] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=ISS] [GO:0031410
"cytoplasmic vesicle" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030663
"COPI-coated vesicle membrane" evidence=IEA] [GO:0000139 "Golgi
membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 dictyBase:DDB_G0267950 GenomeReviews:CM000150_GR
GO:GO:0005198 GO:GO:0015031 EMBL:AAFI02000003 Gene3D:1.25.40.10
GO:GO:0006891 GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253
OMA:NLAMGGE PANTHER:PTHR10805 RefSeq:XP_647441.1
ProteinModelPortal:Q55FU2 STRING:Q55FU2 PRIDE:Q55FU2
EnsemblProtists:DDB0233799 GeneID:8616248 KEGG:ddi:DDB_G0267950
ProtClustDB:CLSZ2431541 Uniprot:Q55FU2
Length = 300
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 102/290 (35%), Positives = 158/290 (54%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEID 64
D LF +N FYLG YQ+ IN + + + E D +YR YIA G+Y LV+ E
Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETK 63
Query: 65 E---SAATP-LQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH 119
S P + ++LLA YLS PD N+E T+ ++ +W+SD + N L++I I+ +
Sbjct: 64 NNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFN 123
Query: 120 EEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAW 178
E+ Y+EAL+ N +E ++ +QIFLK+ R D A++ M++I D D T L+ AW
Sbjct: 124 EQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAW 183
Query: 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXX 238
+N+ G K++ A F++ +E+Y T L+LNG+AVC + M F++AE
Sbjct: 184 INIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPK 243
Query: 239 XPETLANLVVCSLHQGKSTS---RYLNQLKLTHPDHMLVKRASSGDESFE 285
+TLANL+ C ++ K R++NQLK P H + + FE
Sbjct: 244 NSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSAVNEAEALFE 293
>FB|FBgn0027496 [details] [associations]
symbol:epsilonCOP "epsilonCOP" species:7227 "Drosophila
melanogaster" [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=ISS] [GO:0030126 "COPI vesicle coat"
evidence=ISS] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005875 EMBL:AE014134 GO:GO:0005198
Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253
OMA:NLAMGGE PANTHER:PTHR10805 GeneTree:ENSGT00390000003478
EMBL:AF145691 RefSeq:NP_609037.1 UniGene:Dm.3125 SMR:Q9Y0Y5
IntAct:Q9Y0Y5 MINT:MINT-853697 STRING:Q9Y0Y5
EnsemblMetazoa:FBtr0079261 GeneID:33908 KEGG:dme:Dmel_CG9543
UCSC:CG9543-RA CTD:33908 FlyBase:FBgn0027496 InParanoid:Q9Y0Y5
OrthoDB:EOG4JDFPG GenomeRNAi:33908 NextBio:785871 Uniprot:Q9Y0Y5
Length = 306
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 91/282 (32%), Positives = 148/282 (52%)
Query: 10 LFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCL--VYRSYIALGSYQLVISEIDESA 67
LF+ RN +Y+G + +IN LP + L +Y SY+A+ S ++V S+I E
Sbjct: 14 LFDARNEYYIGNFMGSINFV----LPEQGTAGPELLSYMYLSYLAIDSGRIVASDIKEGN 69
Query: 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEAL 127
+TPLQA++L+ P E + L + ++ +N L I++ H+ + AL
Sbjct: 70 STPLQALRLVHEAFEQPSRTEELLEKLTDKVAGEEDETNIW-HLATAIVYCHDGQFENAL 128
Query: 128 KHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187
K + +E AL+VQ L++ R D A++ + MQ+I +D TLTQLA AW+ LA G +
Sbjct: 129 KILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQ 188
Query: 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLV 247
+Q+A+ I+Q+F EK+ T +LNG+AV + + ++EA+ +TL NL+
Sbjct: 189 MQDAFHIYQEFCEKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLM 248
Query: 248 VCSLHQGKST---SRYLNQLKLTHPDHMLVKRASSGDESFER 286
V + GK T +R L QL+ +P V F+R
Sbjct: 249 VHAHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDR 290
>ASPGD|ASPL0000054697 [details] [associations]
symbol:AN0665 species:162425 "Emericella nidulans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 EMBL:BN001308
GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890
HOGENOM:HOG000205825 PANTHER:PTHR10805
EnsemblFungi:CADANIAT00002009 OMA:LERYPNE Uniprot:C8VRT1
Length = 315
Score = 268 (99.4 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 77/260 (29%), Positives = 139/260 (53%)
Query: 5 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEID 64
+A L N+ N F+ G YQ+ I+ + ++ P++A+ L R+ +ALG+ V+++I+
Sbjct: 5 SAEGELINIHNAFHQGQYQSVID-FNTSSFSPENALPARILKLRAQVALGNTDDVLADIE 63
Query: 65 -ESAATP-LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED 122
E+ +P L AVK LA + + N E+ + L + L++ +AT++++ G + +
Sbjct: 64 GETEESPSLSAVKALAQFAAG--NAEAA-TQLAQDLAEN-YPDDATVQVLGGTVLQNVGK 119
Query: 123 YNEAL----KHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAW 178
EAL KH G +E AL VQI L+ +RSD A ++++A ++ +D L LA +W
Sbjct: 120 SEEALALLGKHQ---GNLEAVALIVQIHLQQNRSDLALKEVQAAKRWAQDSLLVNLAESW 176
Query: 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTG-LILNGKAVCCMHMGNFDEAEGXXXXXXXXXX 237
+ + VGG K Q A+ ++++ + + L + G+AV +H+G EAE
Sbjct: 177 VGMRVGGEKYQSAFYVYEELASVDSTSAPLSIIGQAVAEIHLGRLPEAEAAISAALERYP 236
Query: 238 XXPETLANLVVCSLHQGKST 257
+AN +V ++ GK T
Sbjct: 237 NEAGLIANSIVLNVLIGKPT 256
Score = 38 (18.4 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 241 ETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERA 287
E A+L + + + RY +L+L P H L+ + F+ A
Sbjct: 260 EKYASLELSGRMEFTNGLRY-RRLQLVEPSHALLADIQEKSDFFDTA 305
>WB|WBGene00009732 [details] [associations]
symbol:F45G2.4.2 species:6239 "Caenorhabditis elegans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 InterPro:IPR002885 GO:GO:0040010 GO:GO:0002119
GO:GO:0005198 GO:GO:0015031 GO:GO:0040011 Gene3D:1.25.40.10
GO:GO:0030126 GO:GO:0006890 TIGRFAMs:TIGR00756 eggNOG:NOG289253
HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:Z93382 PIR:T22236
RefSeq:NP_499771.1 ProteinModelPortal:O62246 SMR:O62246
DIP:DIP-24766N IntAct:O62246 MINT:MINT-1075566 STRING:O62246
PaxDb:O62246 EnsemblMetazoa:F45G2.4.1 EnsemblMetazoa:F45G2.4.2
GeneID:176766 KEGG:cel:CELE_F45G2.4 UCSC:F45G2.4.2 CTD:176766
WormBase:F45G2.4 InParanoid:O62246 NextBio:893918 Uniprot:O62246
Length = 292
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 82/285 (28%), Positives = 145/285 (50%)
Query: 8 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF++RN F+LG+YQ+ I + ++ ++ E+D +YRSYIA G + + EI +
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62
Query: 67 A-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNE 125
+ L AV+ A + ++P K+ ++ ++E ++ I S L A I+ +E D ++
Sbjct: 63 TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATIL--NEADLSQ 120
Query: 126 -ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG 184
A + + +E A V I +KM++ A +++ M QIDED TL+QLANA +
Sbjct: 121 DAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGA 180
Query: 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLA 244
K+++A I+ + S+KY T + +AV + ++ AE + L
Sbjct: 181 SGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLI 240
Query: 245 NLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
N +V + K R+++QLK HP+H V + + F+R
Sbjct: 241 NSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285
>RGD|1306785 [details] [associations]
symbol:Cope "coatomer protein complex, subunit epsilon"
species:10116 "Rattus norvegicus" [GO:0005794 "Golgi apparatus"
evidence=ISO] [GO:0030137 "COPI-coated vesicle" evidence=ISO]
InterPro:IPR006822 Pfam:PF04733 RGD:1306785 GO:GO:0005198
GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825
PANTHER:PTHR10805 CTD:11316 OrthoDB:EOG43XV42 EMBL:CH474031
EMBL:BC161928 IPI:IPI00201137 RefSeq:NP_001099546.1
UniGene:Rn.229750 STRING:B1WBX7 GeneID:290659 KEGG:rno:290659
UCSC:RGD:1306785 NextBio:631441 Genevestigator:B1WBX7
Uniprot:B1WBX7
Length = 166
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 56/149 (37%), Positives = 90/149 (60%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S + ++S + L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAVRMFAEYLASENRRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYA 155
L+ + G +E A+ +QI LK+ R D A
Sbjct: 137 LRTLHQGDGLECTAMTIQILLKLDRLDLA 165
>POMBASE|SPBC24C6.05 [details] [associations]
symbol:sec28 "coatomer epsilon subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006886
"intracellular protein transport" evidence=IC] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=ISO] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=ISO] [GO:0032511 "late
endosome to vacuole transport via multivesicular body sorting
pathway" evidence=ISO] InterPro:IPR006822 InterPro:IPR011990
Pfam:PF04733 PIRSF:PIRSF016478 PomBase:SPBC24C6.05 GO:GO:0005829
GO:GO:0006886 GO:GO:0005198 EMBL:CU329671 GenomeReviews:CU329671_GR
Gene3D:1.25.40.10 GO:GO:0006888 GO:GO:0030126 GO:GO:0006890
GO:GO:0032511 eggNOG:NOG289253 PANTHER:PTHR10805 PIR:T39969
RefSeq:NP_595959.1 ProteinModelPortal:O74767 STRING:O74767
EnsemblFungi:SPBC24C6.05.1 GeneID:2540317 KEGG:spo:SPBC24C6.05
OrthoDB:EOG41RT44 NextBio:20801446 Uniprot:O74767
Length = 288
Score = 130 (50.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 78/302 (25%), Positives = 131/302 (43%)
Query: 4 AAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALG-SYQLVISE 62
A+ + L+ +R FY G Y + D T++ + + R+ +ALG S + + S
Sbjct: 6 ASLSNELYFVRQYFYSGNY-TKLFEIDTTSMSEKGLELTEIYMARAKLALGESLESIQSI 64
Query: 63 IDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED 122
+ + TP A +LAL + N E I + SD + + + I F +D
Sbjct: 65 LTQK--TPGSAA-ILAL--AGEGNMELIID--QHGNSDSVVQTLGAIFQIKNGSF---DD 114
Query: 123 YNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLR-AMQQIDEDHTLTQLANAWLNL 181
+ LK + +E AL V I L+ H+ + AE+ L+ A+ DE+ L QLA +W+ +
Sbjct: 115 AMDLLKKSVEN--LEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVL-QLAQSWIKI 171
Query: 182 AVGG-SKIQEAYLIFQDFS--EKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXX 238
GG +A+ +F++ + + PMT L G A + + +EA
Sbjct: 172 VSGGVESYNDAFYVFEELNGTDSNPMT---LTGMACADICLLRPEEALSSLKTALDSQPN 228
Query: 239 XPETLANLV--VCSL-----HQGKST-SRYLNQLKLTHPDHMLVKRASSGDESFERALQS 290
E L+N+ + L Q K+ S + N L DH L ++A D +F S
Sbjct: 229 YEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDH-LNEKAQEFD-TFSTQFLS 286
Query: 291 VA 292
A
Sbjct: 287 TA 288
>SGD|S000001338 [details] [associations]
symbol:SEC28 "Epsilon-COP subunit of the coatomer"
species:4932 "Saccharomyces cerevisiae" [GO:0006810 "transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA;ISS;IMP]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0006901 "vesicle coating"
evidence=IGI;IMP] [GO:0032511 "late endosome to vacuole transport
via multivesicular body sorting pathway" evidence=IMP;IPI]
[GO:0000139 "Golgi membrane" evidence=IEA] [GO:0030663 "COPI-coated
vesicle membrane" evidence=IEA] [GO:0005768 "endosome"
evidence=IDA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR006822 Pfam:PF04733 PIRSF:PIRSF016478
SGD:S000001338 GO:GO:0005198 GO:GO:0015031 EMBL:BK006942
GO:GO:0006888 EMBL:Z37997 GO:GO:0030126 GO:GO:0006890 PDB:3MV2
PDB:3MV3 PDBsum:3MV2 PDBsum:3MV3 GO:GO:0032511 OrthoDB:EOG41RT44
EMBL:AF043582 PIR:S48368 RefSeq:NP_012189.2
ProteinModelPortal:P40509 SMR:P40509 DIP:DIP-4711N IntAct:P40509
MINT:MINT-429031 STRING:P40509 PaxDb:P40509 PeptideAtlas:P40509
EnsemblFungi:YIL076W GeneID:854734 KEGG:sce:YIL076W CYGD:YIL076w
eggNOG:NOG252891 HOGENOM:HOG000000967 OMA:ASTMFEN
EvolutionaryTrace:P40509 NextBio:977434 Genevestigator:P40509
GermOnline:YIL076W GO:GO:0006901 Uniprot:P40509
Length = 296
Score = 120 (47.3 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 65/299 (21%), Positives = 116/299 (38%)
Query: 11 FNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRS--YIALGSYQLVISEIDESAA 68
FN++ N+Y G + + + + D+ + L Y++ +ALG YQ +
Sbjct: 4 FNIKQNYYTGNFVQCLQEIEKFSKVTDNTL----LFYKAKTLLALGQYQ------SQDPT 53
Query: 69 TPLQAVKLLALYLSSPDNKESTISSLKEWLSDP-AIGSNATLRLIAGIIFMHEEDYNEAL 127
+ L V L + N E + LK+ + P + AT + I G + E E +
Sbjct: 54 SKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI 113
Query: 128 KHTNAGGTMELHALNVQIFLKMHRSDYA----ERQLRAMQQI--DEDHTLTQLANAWLNL 181
+ A GT EL L +++ L + A + A++ ++ + LA +++
Sbjct: 114 DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 173
Query: 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXX-- 239
A + +++ S+ +P L G + N EA+G
Sbjct: 174 ATNKETATSNFYYYEELSQTFPTWKTQL-GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 232
Query: 240 --------PETLANLVVCSLHQGKSTSRYLNQL-KLTHPDHMLVKRASSGDESFERALQ 289
P LAN + +L QG T NQL KL H +H +K D F+ ++
Sbjct: 233 KENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDH-EHAFIKHHQEIDAKFDELVR 290
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 292 280 0.00082 115 3 11 22 0.37 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 611 (65 KB)
Total size of DFA: 201 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.05u 0.12s 22.17t Elapsed: 00:00:01
Total cpu time: 22.05u 0.12s 22.17t Elapsed: 00:00:01
Start: Fri May 10 18:28:57 2013 End: Fri May 10 18:28:58 2013