BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022777
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630
PE=2 SV=1
Length = 292
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/292 (83%), Positives = 277/292 (94%)
Query: 1 MAAAAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVI 60
MA+ A PDHLFNLRN+FYLGAYQAAINNS++ NL +D VERDCLV+R+YIALGSYQLVI
Sbjct: 1 MASMAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVI 60
Query: 61 SEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120
SEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+NA +RLIAG IFMHE
Sbjct: 61 SEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHE 120
Query: 121 EDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180
EDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLN
Sbjct: 121 EDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLN 180
Query: 181 LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240
LAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE LLL+ALNKDAKDP
Sbjct: 181 LAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDP 240
Query: 241 ETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
ETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A
Sbjct: 241 ETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292
>sp|O64748|COPE2_ARATH Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840
PE=2 SV=1
Length = 293
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/291 (83%), Positives = 272/291 (93%)
Query: 2 AAAAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVIS 61
A A PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVIS
Sbjct: 3 AMGAGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVIS 62
Query: 62 EIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE 121
EIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D IG+N TLRLIAGIIFMHEE
Sbjct: 63 EIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEE 122
Query: 122 DYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNL 181
DYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNL
Sbjct: 123 DYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNL 182
Query: 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241
AVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE LLL+ALNKDAKDPE
Sbjct: 183 AVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPE 242
Query: 242 TLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
TLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA
Sbjct: 243 TLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293
>sp|Q9MAX6|COPE1_ORYSJ Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1
PE=2 SV=1
Length = 287
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/288 (79%), Positives = 262/288 (90%), Gaps = 2/288 (0%)
Query: 5 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEID 64
A+PD LFNLRN FYLGAYQAAINNSD+ L D A ERD +V+RSY+ALGSYQLVISEID
Sbjct: 2 ASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEID 61
Query: 65 ESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYN 124
SAAT LQAVKLLALYLS +KES I SLKEWLSD A+GSN LRLIAGIIFMHE+DY
Sbjct: 62 SSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYT 119
Query: 125 EALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG 184
EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AVG
Sbjct: 120 EALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVG 179
Query: 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLA 244
GSKI+EAYLIFQDF+EKYPMTG++LNGKAVCCMHMG+FDEAE LLL+ALNKDAKDPETLA
Sbjct: 180 GSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLA 239
Query: 245 NLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
NL+VC+LH GK +SRYL+QLKL+HPDH+LVKRA S +++FERALQ+VA
Sbjct: 240 NLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287
>sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica
GN=Os04g0644700 PE=3 SV=1
Length = 297
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/297 (69%), Positives = 240/297 (80%), Gaps = 5/297 (1%)
Query: 1 MAAAAAPDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSY 56
MA AA+PDHLF LRN+FY+GAYQA I L PD ERD L+YRSYIA+GS+
Sbjct: 1 MAGAASPDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSH 60
Query: 57 QLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115
QLVI EI AATPLQAV+LL +YLS KES I L E L+D A+GSN LRL+AG
Sbjct: 61 QLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGT 120
Query: 116 IFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLA 175
+ MHE DY ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLA
Sbjct: 121 VLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLA 180
Query: 176 NAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235
NAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEGLLL++LNK
Sbjct: 181 NAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNK 240
Query: 236 DAKDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
DAKD ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct: 241 DAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297
>sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica
GN=H0413E07.10 PE=3 SV=2
Length = 297
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/297 (69%), Positives = 240/297 (80%), Gaps = 5/297 (1%)
Query: 1 MAAAAAPDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSY 56
MA AA+PDHLF LR +FY+GAYQA I L PD ERD L+YRSYIA+GS+
Sbjct: 1 MAGAASPDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSH 60
Query: 57 QLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115
QLVI EI AATPLQAV+LLA+YLS KES I L E L+D A+GSN LRL+AG
Sbjct: 61 QLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGT 120
Query: 116 IFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLA 175
+ MHE DY ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLA
Sbjct: 121 VLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLA 180
Query: 176 NAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235
NAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEGLLL++LNK
Sbjct: 181 NAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNK 240
Query: 236 DAKDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292
DAKD ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct: 241 DAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297
>sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1
Length = 308
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/283 (43%), Positives = 188/283 (66%), Gaps = 4/283 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N+FY+GAYQAAIN + + P+ ERD ++RSYIA Y +V+ EI +
Sbjct: 17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKAN 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
A+ LQAV++ A YLS+ +++ ++ L + ++ +N T L+A I+ H+++ + A
Sbjct: 77 ASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG
Sbjct: 137 LRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G +D+AEG+L +AL+KD+ PETL N
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINF 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
VV S H GK T+RYL+QLK H +H +K + + F+R
Sbjct: 257 VVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDR 299
>sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2
Length = 308
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 185/287 (64%), Gaps = 5/287 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L PD VERD +YR+YIA Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL++ + +++ + L +S +N T L+A ++ H+++ + A
Sbjct: 77 SAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ +QI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAVGG
Sbjct: 137 LRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+QEAY IFQ+ ++K T L+LNG+A C G ++ AEG+L +AL+KD+ PETL NL
Sbjct: 197 KLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 289
+V S H GK T+RYL+QLK H H +K + + F+R ALQ
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303
>sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3
Length = 308
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 181/283 (63%), Gaps = 4/283 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S + ++S + L +S +N T L+A I+ H+++ + A
Sbjct: 77 SAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G +E A+ +QI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAVGG
Sbjct: 137 LRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+QEAY IFQ+ ++K T L+LNG+A C G ++ AEG+L +AL+KD+ PETL NL
Sbjct: 197 KLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
+V S H GK T+RYL+QLK H H +K + + F+R
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDR 299
>sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1
Length = 308
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 183/283 (64%), Gaps = 4/283 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A + +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+ ++S ++ L +S +N T L+A I++H+++ + A
Sbjct: 77 SAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG
Sbjct: 137 LRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEGLL +AL+KD+ PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
+V S H GK T+RYL+QLK H H +K + + F+R
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
>sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3
Length = 308
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 183/283 (64%), Gaps = 4/283 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + L P+ VERD +YR+Y+A + +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+ ++S ++ L +S +N T L+A I++H+++ + A
Sbjct: 77 SAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG
Sbjct: 137 LRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEGLL +AL+KD+ PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
+V S H GK T+RYL+QLK H H +K + + F+R
Sbjct: 257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
>sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3
Length = 308
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/283 (42%), Positives = 182/283 (64%), Gaps = 4/283 (1%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF+++N FY+G+YQ IN + + P+ VERD +YR+Y+A Y +V+ EI S
Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 76
Query: 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126
+A LQAV++ A YL+S +++ ++ L +S +N T L+A I+ ++++ + A
Sbjct: 77 SAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 136
Query: 127 LKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186
L+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW++LA GG
Sbjct: 137 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 196
Query: 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246
K+Q+AY IFQ+ ++K T L+LNG+A C M G ++ AEG+L +AL+KD+ PETL NL
Sbjct: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 256
Query: 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
VV S H GK T+RYL+QLK H H +K + + F+R
Sbjct: 257 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDR 299
>sp|Q55FU2|COPE_DICDI Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3
SV=1
Length = 300
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 12/290 (4%)
Query: 8 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEID 64
D LF +N FYLG YQ+ IN + + + E D +YR YIA G+Y LV+ E
Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETK 63
Query: 65 ESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH 119
+ + + ++LLA YLS PD N+E T+ ++ +W+SD + N L++I I+ +
Sbjct: 64 NNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFN 123
Query: 120 EEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAW 178
E+ Y+EAL+ N +E ++ +QIFLK+ R D A++ M++I D D T L+ AW
Sbjct: 124 EQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAW 183
Query: 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238
+N+ G K++ A F++ +E+Y T L+LNG+AVC + M F++AE LLL+++ K+ K
Sbjct: 184 INIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPK 243
Query: 239 DPETLANLVVCSLHQGKST---SRYLNQLKLTHPDHMLVKRASSGDESFE 285
+ +TLANL+ C ++ K R++NQLK P H + + FE
Sbjct: 244 NSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSAVNEAEALFE 293
>sp|O62246|COPE_CAEEL Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=3
SV=1
Length = 292
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 154/287 (53%), Gaps = 12/287 (4%)
Query: 8 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66
D LF++RN F+LG+YQ+ I + ++ ++ E+D +YRSYIA G + + EI
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEI--P 60
Query: 67 AATP---LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDY 123
AAT L AV+ A + ++P K+ ++ ++E ++ I S L A I ++E D
Sbjct: 61 AATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATI--LNEADL 118
Query: 124 NE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182
++ A + + +E A V I +KM++ A +++ M QIDED TL+QLANA +
Sbjct: 119 SQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSF 178
Query: 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242
K+++A I+ + S+KY T + +AV + ++ AE LL AL +D KD +
Sbjct: 179 GASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADV 238
Query: 243 LANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 286
L N +V + K R+++QLK HP+H V + + F+R
Sbjct: 239 LINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285
>sp|O74767|COPE_SCHPO Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1
Length = 288
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 22/251 (8%)
Query: 4 AAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEI 63
A+ + L+ +R FY G Y + D T++ + + R+ +ALG I I
Sbjct: 6 ASLSNELYFVRQYFYSGNY-TKLFEIDTTSMSEKGLELTEIYMARAKLALGESLESIQSI 64
Query: 64 DESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDY 123
+ TP A L L+ N E I D S++ ++ + I + +
Sbjct: 65 -LTQKTPGSAA---ILALAGEGNMELII--------DQHGNSDSVVQTLGAIFQIKNGSF 112
Query: 124 NEALKHTNAG-GTMELHALNVQIFLKMHRSDYAERQLR-AMQQIDEDHTLTQLANAWLNL 181
++A+ +E AL V I L+ H+ + AE+ L+ A+ DE+ L QLA +W+ +
Sbjct: 113 DDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVL-QLAQSWIKI 171
Query: 182 AVGG-SKIQEAYLIFQDF--SEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238
GG +A+ +F++ ++ PMT L G A + + +EA L AL+
Sbjct: 172 VSGGVESYNDAFYVFEELNGTDSNPMT---LTGMACADICLLRPEEALSSLKTALDSQPN 228
Query: 239 DPETLANLVVC 249
E L+N+
Sbjct: 229 YEEALSNMTTA 239
>sp|P40509|COPE_YEAST Coatomer subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC28 PE=1 SV=2
Length = 296
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 42/304 (13%)
Query: 11 FNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYR--SYIALGSYQLVISEIDESAA 68
FN++ N+Y G + + + + D+ + L Y+ + +ALG YQ +
Sbjct: 4 FNIKQNYYTGNFVQCLQEIEKFSKVTDNTL----LFYKAKTLLALGQYQ---------SQ 50
Query: 69 TPLQAV-KLLALYLSSPDNKESTISSLKEWLSDPAIGSN-----ATLRLIAGIIFMHEED 122
P + K+L LY+ D K I L+ L D AT + I G + E
Sbjct: 51 DPTSKLGKVLDLYVQFLDTK--NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLET 108
Query: 123 YNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDED------HTLTQLAN 176
E + + A GT EL L +++ L + A ED + LA
Sbjct: 109 CVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 168
Query: 177 AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEG----LLLDA 232
+++ A + +++ S+ +P L G + N EA+G LL D
Sbjct: 169 SYIKFATNKETATSNFYYYEELSQTFPTWKTQL-GLLNLHLQQRNIAEAQGIVELLLSDY 227
Query: 233 LNKDAKD------PETLANLVVCSLHQGKSTSRYLNQL-KLTHPDHMLVKRASSGDESFE 285
+ + K+ P LAN + +L QG T NQL KL H +H +K D F+
Sbjct: 228 YSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDH-EHAFIKHHQEIDAKFD 286
Query: 286 RALQ 289
++
Sbjct: 287 ELVR 290
>sp|Q4U3U5|QUTR_NEUAF Quinate repressor protein OS=Neurospora africana GN=qa-1s PE=3 SV=1
Length = 919
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 138 LHALNVQIFLKMH-RSDYAERQLRAMQQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIF 195
L L+ + K H +DY RQ+ +Q I H T L +WL ++ +
Sbjct: 140 LTGLSSSTYKKRHGPADYGRRQITILQNILNLHRTRAILVCSWLE--------RDVQALL 191
Query: 196 QDFSEKYPMTGLILNGKAVCCMHMGNFDEAE-GLLLDA 232
QDFS P+ ++ + KA+ H+ +D+++ G LLDA
Sbjct: 192 QDFSTSNPVIYVLRDAKAIEA-HLKGYDKSKVGTLLDA 228
>sp|P11637|QUTR_NEUCR Quinate repressor protein OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=qa-1s
PE=3 SV=2
Length = 919
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 138 LHALNVQIFLKMHRS-DYAERQLRAMQQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIF 195
L L+ + K H DY RQ+ +Q I H T L +WL ++ +
Sbjct: 140 LTGLSSSSYKKTHGPVDYGRRQIAILQNILNLHRTRAILVCSWLE--------RDVQAML 191
Query: 196 QDFSEKYPMTGLILNGKAVCCMHMGNFDEAE-GLLLDA 232
QDFS P+ ++ + KA+ H+ +D+++ G LLDA
Sbjct: 192 QDFSVSNPVIYVLRDAKAIEA-HLKGYDKSKVGTLLDA 228
>sp|O60107|SNX41_SCHPO Sorting nexin-41 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=snx41 PE=1 SV=1
Length = 586
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 151 RSDYAERQLRAMQQIDEDHTLTQLANAWL---NLAVGGSKIQEAYLIFQDFSEKYPMTGL 207
R +A R +A+ ++D D L + + A L N S I E +F D K P L
Sbjct: 371 RERHAARLQQAIGEVDGDVILNRESEATLGVNNAQTSRSTIPEEDPLFNDEESKEPSVPL 430
Query: 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLA 244
+ + + H GN ++ E L D + ++D ET++
Sbjct: 431 MGTDQPLENYHDGNGEQTEECLRDLRHNQSQDFETVS 467
>sp|Q0VPD2|Y1518_ALCBS UPF0276 protein ABO_1518 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=ABO_1518 PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 209 LNGKAVCCMHM-GNFDEAEGLLLDALNKDAKDP 240
L G+ +C +H+ G+FDEAE L +D D DP
Sbjct: 206 LPGERICYLHIAGHFDEAEDLKVDTHGSDVIDP 238
>sp|P11274|BCR_HUMAN Breakpoint cluster region protein OS=Homo sapiens GN=BCR PE=1 SV=2
Length = 1271
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 194 IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ 253
+++ F + Y G+ + CC F E L NKDAKDP T +L
Sbjct: 590 VYRAFVDNY---GVAMEMAEKCCQANAQFAEISENLRARSNKDAKDPTTKNSLETLLYKP 646
Query: 254 GKSTSR-------YLNQLKLTHPDHMLVKRA 277
+R L +HPDH L++ A
Sbjct: 647 VDRVTRSTLVLHDLLKHTPASHPDHPLLQDA 677
>sp|Q4U3U3|QUTR_NEUTR Quinate repressor protein OS=Neurospora terricola GN=qa-1s PE=3
SV=1
Length = 917
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 152 SDYAERQLRAMQQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILN 210
+DY R + +Q I H T L +WL ++ + QDFS P+ ++ +
Sbjct: 153 ADYGRRHITILQNILNLHRTRAILVCSWLE--------RDVQAMLQDFSTSNPVIYVLRD 204
Query: 211 GKAVCCMHMGNFDEAE-GLLLDA 232
KA+ H+ +D+++ G LLDA
Sbjct: 205 AKAIEA-HLKGYDKSKVGALLDA 226
>sp|Q9XAI3|Y3619_STRCO Nucleoid-associated protein SCO3619 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=SCO3619 PE=3
SV=1
Length = 115
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKSTSRYLNQLKL 266
E GL++D D +D ETLA+LVV ++ ++ L Q KL
Sbjct: 54 ELRGLVIDPKAVDPEDTETLADLVVAAVQAANENAQNLQQQKL 96
>sp|Q8BSY0|ASPH_MOUSE Aspartyl/asparaginyl beta-hydroxylase OS=Mus musculus GN=Asph PE=2
SV=1
Length = 741
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN--KDAKD-PET 242
KI+EA F++ KYP + GKA C + + +L A+ ++A D P+
Sbjct: 338 GKIEEAVNAFEELVRKYPQSPRARYGKAQCEDDLAEKQRSNEVLRRAIETYQEAADLPDA 397
Query: 243 LANLVVCSLHQGKSTSRYLNQLK 265
+LV SL + ++L ++
Sbjct: 398 PTDLVKLSLKRRSERQQFLGHMR 420
>sp|Q9LJK2|ABAH4_ARATH Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4
PE=2 SV=2
Length = 468
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 54 GSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIA 113
G Y I ++ +S+ P KL+ PD + +SSL+ W + P + + ++ A
Sbjct: 121 GDYHSHIRKLVQSSFYPETIRKLI------PDIEHIALSSLQSWANMPIVSTYQEMKKFA 174
Query: 114 ---GI--IFMH-EEDYNEALKH 129
GI IF H E Y E LKH
Sbjct: 175 FDVGILAIFGHLESSYKEILKH 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,191,437
Number of Sequences: 539616
Number of extensions: 4179175
Number of successful extensions: 10824
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10774
Number of HSP's gapped (non-prelim): 42
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)