Query 022777
Match_columns 292
No_of_seqs 146 out of 1804
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04733 Coatomer_E: Coatomer 100.0 1.1E-39 2.4E-44 279.4 25.2 286 7-292 2-290 (290)
2 KOG3081 Vesicle coat complex C 100.0 5.7E-36 1.2E-40 242.3 27.5 287 4-292 6-296 (299)
3 KOG4626 O-linked N-acetylgluco 100.0 1E-27 2.2E-32 213.5 20.9 258 11-273 222-491 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 2.1E-27 4.6E-32 211.5 17.2 274 10-291 119-411 (966)
5 PRK15174 Vi polysaccharide exp 100.0 7.6E-26 1.6E-30 215.4 29.1 269 17-291 87-375 (656)
6 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-25 1E-29 209.7 30.8 203 87-291 310-531 (615)
7 PRK15174 Vi polysaccharide exp 99.9 4.8E-25 1E-29 210.0 29.5 269 14-289 118-402 (656)
8 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-25 1.4E-29 208.6 28.7 273 14-291 168-565 (615)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 6.9E-24 1.5E-28 208.3 30.0 254 15-274 576-839 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.2E-23 2.5E-28 206.7 29.6 272 14-291 609-894 (899)
11 PRK11447 cellulose synthase su 99.9 2.9E-23 6.3E-28 209.4 29.4 271 15-290 278-693 (1157)
12 PRK11447 cellulose synthase su 99.9 2.7E-23 5.9E-28 209.7 28.8 272 15-291 360-734 (1157)
13 PRK11788 tetratricopeptide rep 99.9 1.4E-22 3E-27 182.5 28.7 261 11-277 40-321 (389)
14 PRK09782 bacteriophage N4 rece 99.9 1E-21 2.2E-26 192.2 31.0 254 31-291 467-734 (987)
15 PRK09782 bacteriophage N4 rece 99.9 1.2E-21 2.6E-26 191.6 26.3 260 6-272 476-745 (987)
16 PRK11788 tetratricopeptide rep 99.9 1E-20 2.3E-25 170.3 29.0 252 40-291 35-305 (389)
17 PF13429 TPR_15: Tetratricopep 99.9 8.8E-23 1.9E-27 175.9 12.6 250 10-266 12-276 (280)
18 PRK10049 pgaA outer membrane p 99.9 1.8E-20 3.9E-25 181.9 28.8 269 15-289 58-448 (765)
19 PF13429 TPR_15: Tetratricopep 99.9 3.3E-22 7.2E-27 172.3 12.9 241 44-289 12-269 (280)
20 PRK10049 pgaA outer membrane p 99.9 8E-20 1.7E-24 177.4 28.6 261 15-281 125-470 (765)
21 TIGR00540 hemY_coli hemY prote 99.9 2.1E-19 4.5E-24 162.9 26.8 253 10-266 88-398 (409)
22 KOG0547 Translocase of outer m 99.8 6.5E-19 1.4E-23 153.9 23.8 213 74-290 329-559 (606)
23 PRK12370 invasion protein regu 99.8 8E-19 1.7E-23 164.7 25.1 227 43-273 261-511 (553)
24 KOG1126 DNA-binding cell divis 99.8 1.3E-19 2.8E-24 163.5 18.7 248 21-273 334-626 (638)
25 KOG1126 DNA-binding cell divis 99.8 1.5E-19 3.2E-24 163.1 18.7 205 34-243 416-628 (638)
26 PRK10747 putative protoheme IX 99.8 3.4E-18 7.4E-23 154.3 27.0 247 12-267 90-390 (398)
27 TIGR02521 type_IV_pilW type IV 99.8 5.7E-18 1.2E-22 140.3 24.0 195 71-269 31-234 (234)
28 KOG2002 TPR-containing nuclear 99.8 1.2E-18 2.7E-23 162.6 21.0 276 12-291 170-475 (1018)
29 PRK11189 lipoprotein NlpI; Pro 99.8 7.6E-18 1.7E-22 146.1 23.4 224 20-250 40-281 (296)
30 PRK12370 invasion protein regu 99.8 4.6E-18 9.9E-23 159.6 23.0 239 19-267 274-535 (553)
31 KOG1173 Anaphase-promoting com 99.8 8.1E-18 1.8E-22 149.4 22.4 262 13-279 251-530 (611)
32 TIGR02521 type_IV_pilW type IV 99.8 2.7E-17 5.8E-22 136.3 24.3 198 36-237 27-234 (234)
33 KOG0624 dsRNA-activated protei 99.8 1.5E-17 3.3E-22 139.9 22.2 271 4-277 66-380 (504)
34 KOG0547 Translocase of outer m 99.8 1.4E-17 3.1E-22 145.6 21.4 273 15-291 124-485 (606)
35 PRK11189 lipoprotein NlpI; Pro 99.8 3.2E-17 7E-22 142.2 23.2 193 71-272 64-270 (296)
36 KOG1129 TPR repeat-containing 99.8 1.6E-18 3.5E-23 144.9 11.6 223 46-272 229-463 (478)
37 KOG1129 TPR repeat-containing 99.8 2.5E-17 5.4E-22 137.8 16.1 234 13-254 230-477 (478)
38 KOG1125 TPR repeat-containing 99.8 2.5E-17 5.3E-22 146.8 15.3 223 44-270 289-530 (579)
39 COG3063 PilF Tfp pilus assembl 99.8 5.6E-16 1.2E-20 124.1 21.1 200 39-276 34-245 (250)
40 PRK10747 putative protoheme IX 99.7 1.3E-15 2.9E-20 137.4 26.3 243 44-291 88-384 (398)
41 TIGR00540 hemY_coli hemY prote 99.7 1.2E-15 2.7E-20 138.2 25.8 121 44-166 88-217 (409)
42 PRK14574 hmsH outer membrane p 99.7 1.9E-15 4.2E-20 145.7 28.0 274 10-288 38-504 (822)
43 PRK14574 hmsH outer membrane p 99.7 3.3E-15 7E-20 144.1 29.1 260 15-279 111-525 (822)
44 KOG2076 RNA polymerase III tra 99.7 1.1E-15 2.3E-20 142.4 24.6 250 12-264 145-509 (895)
45 COG3063 PilF Tfp pilus assembl 99.7 4.6E-15 9.9E-20 118.9 22.0 165 106-272 34-207 (250)
46 KOG2002 TPR-containing nuclear 99.7 4.1E-15 9E-20 139.4 24.0 262 9-278 272-570 (1018)
47 KOG2003 TPR repeat-containing 99.7 4.1E-15 9E-20 129.5 22.0 264 9-276 422-698 (840)
48 KOG0624 dsRNA-activated protei 99.7 5.6E-15 1.2E-19 124.6 21.4 214 68-283 35-268 (504)
49 KOG0495 HAT repeat protein [RN 99.7 8.6E-15 1.9E-19 132.3 23.6 256 12-272 590-885 (913)
50 KOG1174 Anaphase-promoting com 99.7 1.2E-14 2.5E-19 125.3 22.9 253 19-276 209-509 (564)
51 COG2956 Predicted N-acetylgluc 99.7 2.3E-14 4.9E-19 120.0 23.8 226 44-272 39-283 (389)
52 KOG1173 Anaphase-promoting com 99.7 5.6E-15 1.2E-19 131.5 21.1 247 40-291 244-512 (611)
53 KOG1155 Anaphase-promoting com 99.7 1E-14 2.2E-19 127.2 21.5 179 108-288 331-527 (559)
54 PLN02789 farnesyltranstransfer 99.7 1.5E-14 3.4E-19 125.8 22.5 203 71-277 37-260 (320)
55 KOG1174 Anaphase-promoting com 99.7 1E-14 2.2E-19 125.6 20.9 231 12-248 238-513 (564)
56 COG2956 Predicted N-acetylgluc 99.7 2.2E-14 4.7E-19 120.1 22.1 262 10-277 39-321 (389)
57 PLN03081 pentatricopeptide (PP 99.7 2E-14 4.3E-19 139.0 25.5 268 13-289 266-549 (697)
58 KOG1125 TPR repeat-containing 99.7 3.9E-15 8.5E-20 132.9 17.8 234 12-256 291-558 (579)
59 TIGR03302 OM_YfiO outer membra 99.7 1.8E-14 4E-19 120.8 20.8 179 71-270 33-235 (235)
60 KOG4162 Predicted calmodulin-b 99.6 4.6E-14 1E-18 129.7 22.5 247 22-273 460-789 (799)
61 PLN03218 maturation of RBCL 1; 99.6 2.9E-13 6.2E-18 134.1 29.7 245 15-266 481-747 (1060)
62 KOG1155 Anaphase-promoting com 99.6 4.6E-14 9.9E-19 123.2 21.1 199 75-277 334-546 (559)
63 KOG2003 TPR repeat-containing 99.6 2.8E-14 6E-19 124.4 18.9 240 21-265 471-720 (840)
64 TIGR03302 OM_YfiO outer membra 99.6 3.2E-14 6.9E-19 119.4 19.0 179 39-238 32-235 (235)
65 PRK15359 type III secretion sy 99.6 1.6E-14 3.4E-19 111.9 15.2 119 156-279 13-133 (144)
66 PLN03218 maturation of RBCL 1; 99.6 7.4E-13 1.6E-17 131.2 30.1 268 15-289 446-740 (1060)
67 KOG1840 Kinesin light chain [C 99.6 3E-13 6.4E-18 123.2 25.1 249 31-282 191-499 (508)
68 KOG0550 Molecular chaperone (D 99.6 8.1E-15 1.7E-19 126.2 13.1 268 8-277 50-359 (486)
69 PLN03081 pentatricopeptide (PP 99.6 1.6E-13 3.4E-18 132.7 23.5 244 12-267 296-557 (697)
70 KOG0548 Molecular co-chaperone 99.6 5.9E-13 1.3E-17 118.3 23.1 100 15-117 11-114 (539)
71 KOG4162 Predicted calmodulin-b 99.6 1E-12 2.2E-17 121.0 25.4 272 17-291 368-777 (799)
72 PRK15179 Vi polysaccharide bio 99.6 5.4E-13 1.2E-17 126.7 23.9 146 92-241 73-223 (694)
73 PLN03077 Protein ECB2; Provisi 99.6 6.8E-13 1.5E-17 131.2 25.7 239 44-289 428-712 (857)
74 KOG2076 RNA polymerase III tra 99.6 3.9E-13 8.5E-18 125.5 21.8 89 143-233 421-510 (895)
75 PLN02789 farnesyltranstransfer 99.6 1.2E-12 2.7E-17 113.9 23.5 212 39-252 36-267 (320)
76 PLN03077 Protein ECB2; Provisi 99.6 9.8E-13 2.1E-17 130.0 25.4 269 13-291 330-648 (857)
77 PRK15359 type III secretion sy 99.6 1.4E-13 3.1E-18 106.5 15.3 115 136-252 24-138 (144)
78 COG3071 HemY Uncharacterized e 99.6 8.8E-12 1.9E-16 107.3 26.8 244 14-266 92-389 (400)
79 TIGR02552 LcrH_SycD type III s 99.6 1.9E-13 4E-18 104.6 14.9 125 157-283 4-130 (135)
80 PRK15179 Vi polysaccharide bio 99.6 3.5E-13 7.7E-18 128.0 19.7 187 74-270 31-220 (694)
81 KOG1156 N-terminal acetyltrans 99.6 1E-12 2.2E-17 119.0 20.8 277 12-291 13-310 (700)
82 PRK10370 formate-dependent nit 99.5 1E-12 2.3E-17 107.0 19.2 122 149-272 52-178 (198)
83 KOG0495 HAT repeat protein [RN 99.5 6.3E-12 1.4E-16 114.1 25.5 249 19-272 529-787 (913)
84 cd05804 StaR_like StaR_like; a 99.5 6.7E-13 1.5E-17 118.1 19.6 204 67-275 2-223 (355)
85 cd05804 StaR_like StaR_like; a 99.5 1.9E-12 4.2E-17 115.1 21.5 197 35-237 2-217 (355)
86 PRK10370 formate-dependent nit 99.5 1.5E-12 3.3E-17 106.1 17.5 123 120-242 52-180 (198)
87 KOG1840 Kinesin light chain [C 99.5 2E-12 4.2E-17 117.9 18.7 218 12-235 205-479 (508)
88 COG5010 TadD Flp pilus assembl 99.5 5.6E-12 1.2E-16 103.2 18.8 167 90-261 52-225 (257)
89 PF12569 NARP1: NMDA receptor- 99.5 1.5E-10 3.2E-15 106.7 27.9 82 185-266 207-290 (517)
90 KOG0548 Molecular co-chaperone 99.5 1.4E-11 2.9E-16 109.7 19.8 245 15-277 233-495 (539)
91 PRK15363 pathogenicity island 99.4 6.2E-12 1.3E-16 96.5 14.8 110 180-289 43-154 (157)
92 COG5010 TadD Flp pilus assembl 99.4 1.3E-11 2.9E-16 101.1 17.4 154 133-289 64-223 (257)
93 PF04733 Coatomer_E: Coatomer 99.4 1E-11 2.3E-16 106.8 17.5 222 9-243 38-273 (290)
94 PRK14720 transcript cleavage f 99.4 2.2E-11 4.7E-16 117.1 20.8 199 34-252 26-269 (906)
95 KOG3060 Uncharacterized conser 99.4 2.4E-10 5.2E-15 93.2 21.3 157 85-245 66-230 (289)
96 TIGR02552 LcrH_SycD type III s 99.4 4.1E-11 8.8E-16 91.5 14.8 109 133-243 14-122 (135)
97 KOG3060 Uncharacterized conser 99.3 5.9E-10 1.3E-14 90.9 20.7 178 41-221 53-240 (289)
98 KOG0550 Molecular chaperone (D 99.3 4E-11 8.8E-16 103.7 14.6 234 13-251 90-368 (486)
99 KOG0553 TPR repeat-containing 99.3 9.3E-12 2E-16 103.8 10.3 87 186-272 95-183 (304)
100 KOG1128 Uncharacterized conser 99.3 9E-11 2E-15 107.9 17.1 217 39-266 397-615 (777)
101 KOG3785 Uncharacterized conser 99.3 2.9E-10 6.3E-15 96.9 18.3 256 9-273 60-461 (557)
102 PRK14720 transcript cleavage f 99.3 4.7E-10 1E-14 108.1 21.2 188 67-274 27-259 (906)
103 PLN03088 SGT1, suppressor of 99.3 1.6E-10 3.5E-15 102.7 16.0 113 139-253 5-117 (356)
104 KOG2376 Signal recognition par 99.3 1.3E-09 2.8E-14 98.3 20.6 223 10-243 16-261 (652)
105 COG4783 Putative Zn-dependent 99.3 7.6E-09 1.7E-13 91.7 25.0 122 133-256 303-424 (484)
106 PLN03088 SGT1, suppressor of 99.3 1.6E-10 3.5E-15 102.7 14.5 98 184-281 14-113 (356)
107 PRK15363 pathogenicity island 99.2 4E-10 8.6E-15 86.6 12.7 102 133-236 32-133 (157)
108 KOG3785 Uncharacterized conser 99.2 1.3E-08 2.8E-13 87.0 22.9 273 13-288 29-379 (557)
109 KOG1156 N-terminal acetyltrans 99.2 4.1E-09 8.9E-14 96.0 21.1 230 41-274 8-255 (700)
110 KOG2376 Signal recognition par 99.2 8.4E-09 1.8E-13 93.1 22.6 223 41-273 13-259 (652)
111 PF13525 YfiO: Outer membrane 99.2 4.4E-09 9.5E-14 86.2 19.3 151 106-256 4-194 (203)
112 PF12569 NARP1: NMDA receptor- 99.2 2.6E-08 5.6E-13 92.0 26.1 251 10-266 8-333 (517)
113 KOG0553 TPR repeat-containing 99.2 5.2E-10 1.1E-14 93.5 13.5 113 141-255 86-198 (304)
114 COG4783 Putative Zn-dependent 99.2 3.8E-08 8.2E-13 87.4 25.4 149 103-253 302-455 (484)
115 PF13414 TPR_11: TPR repeat; P 99.2 1E-10 2.2E-15 78.5 7.4 66 204-269 1-69 (69)
116 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.2E-09 2.7E-14 81.1 13.5 103 137-241 3-111 (119)
117 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.6E-09 3.6E-14 80.4 14.2 95 184-278 14-116 (119)
118 COG3071 HemY Uncharacterized e 99.2 5E-08 1.1E-12 84.5 24.8 219 49-272 93-362 (400)
119 KOG1127 TPR repeat-containing 99.1 2.4E-09 5.2E-14 101.5 15.2 238 31-272 518-884 (1238)
120 PRK04841 transcriptional regul 99.1 4.2E-08 9.1E-13 97.9 25.3 263 15-277 461-770 (903)
121 KOG1127 TPR repeat-containing 99.1 3.7E-09 8.1E-14 100.3 16.0 193 56-252 474-676 (1238)
122 PF13432 TPR_16: Tetratricopep 99.1 4.1E-10 9E-15 74.6 6.9 57 184-240 9-65 (65)
123 PRK10866 outer membrane biogen 99.1 3.7E-08 7.9E-13 82.9 20.0 159 106-264 31-238 (243)
124 PF13432 TPR_16: Tetratricopep 99.1 8.7E-10 1.9E-14 73.0 8.1 62 211-272 2-65 (65)
125 CHL00033 ycf3 photosystem I as 99.1 3.2E-09 7E-14 84.3 12.8 100 185-284 48-167 (168)
126 KOG1128 Uncharacterized conser 99.1 9.6E-09 2.1E-13 94.8 16.5 185 104-291 395-610 (777)
127 PRK10866 outer membrane biogen 99.1 4.7E-08 1E-12 82.2 19.5 153 77-231 38-237 (243)
128 COG4105 ComL DNA uptake lipopr 99.0 1.1E-07 2.4E-12 78.4 20.6 172 106-277 33-243 (254)
129 COG4235 Cytochrome c biogenesi 99.0 9.4E-09 2E-13 86.5 14.5 109 133-241 153-262 (287)
130 cd00189 TPR Tetratricopeptide 99.0 6.8E-09 1.5E-13 72.5 11.9 97 139-237 3-99 (100)
131 PRK10803 tol-pal system protei 99.0 1.3E-08 2.8E-13 86.4 14.9 93 185-277 156-256 (263)
132 COG4235 Cytochrome c biogenesi 99.0 2.6E-08 5.6E-13 83.9 15.5 121 151-273 137-263 (287)
133 PF09976 TPR_21: Tetratricopep 99.0 2.3E-08 5E-13 77.4 14.1 111 51-163 22-145 (145)
134 PF14559 TPR_19: Tetratricopep 99.0 2E-09 4.2E-14 71.9 6.9 64 185-248 4-67 (68)
135 PF13525 YfiO: Outer membrane 99.0 5.5E-08 1.2E-12 79.7 16.7 172 36-227 1-199 (203)
136 PF09976 TPR_21: Tetratricopep 99.0 4.2E-08 9.2E-13 75.9 15.2 112 119-233 23-145 (145)
137 PRK02603 photosystem I assembl 99.0 1.7E-08 3.8E-13 80.5 13.3 88 185-272 48-154 (172)
138 PRK10153 DNA-binding transcrip 98.9 6.1E-08 1.3E-12 90.0 17.7 140 133-273 334-488 (517)
139 PRK15331 chaperone protein Sic 98.9 1.9E-08 4.2E-13 77.7 12.1 91 185-276 50-142 (165)
140 PF12895 Apc3: Anaphase-promot 98.9 3.6E-09 7.8E-14 73.9 7.1 77 84-162 2-84 (84)
141 cd00189 TPR Tetratricopeptide 98.9 2E-08 4.4E-13 70.0 11.2 86 185-270 13-100 (100)
142 PF13414 TPR_11: TPR repeat; P 98.9 1.3E-08 2.8E-13 68.1 8.6 54 184-237 15-69 (69)
143 PF14938 SNAP: Soluble NSF att 98.9 8.8E-07 1.9E-11 76.4 22.0 211 40-277 35-273 (282)
144 PF12895 Apc3: Anaphase-promot 98.9 4.4E-09 9.6E-14 73.4 6.3 75 187-262 4-82 (84)
145 PRK02603 photosystem I assembl 98.9 8E-08 1.7E-12 76.6 14.4 116 103-240 31-154 (172)
146 KOG1915 Cell cycle control pro 98.9 2.8E-06 6E-11 75.5 24.2 270 18-290 153-493 (677)
147 KOG4340 Uncharacterized conser 98.9 5.1E-08 1.1E-12 81.6 12.6 180 50-235 20-207 (459)
148 KOG4340 Uncharacterized conser 98.9 4.1E-07 9E-12 76.3 17.6 179 15-199 19-205 (459)
149 PRK11906 transcriptional regul 98.9 1.3E-07 2.9E-12 84.3 15.6 125 153-277 275-411 (458)
150 PRK10803 tol-pal system protei 98.8 2E-07 4.3E-12 79.1 16.1 106 136-243 142-254 (263)
151 KOG0543 FKBP-type peptidyl-pro 98.8 7.9E-08 1.7E-12 83.8 13.7 84 185-268 270-356 (397)
152 PRK10153 DNA-binding transcrip 98.8 2.2E-07 4.7E-12 86.3 17.2 136 104-242 334-489 (517)
153 PF14559 TPR_19: Tetratricopep 98.8 1E-08 2.2E-13 68.4 6.0 64 216-279 1-66 (68)
154 KOG3081 Vesicle coat complex C 98.8 2.1E-06 4.4E-11 71.0 20.4 221 10-242 45-278 (299)
155 PF13371 TPR_9: Tetratricopept 98.8 3.5E-08 7.5E-13 66.8 8.3 64 184-247 7-70 (73)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.8E-07 4E-12 83.4 14.7 117 113-231 175-293 (395)
157 COG0457 NrfG FOG: TPR repeat [ 98.8 8.1E-06 1.8E-10 66.0 22.7 214 53-270 36-268 (291)
158 CHL00033 ycf3 photosystem I as 98.8 6.5E-07 1.4E-11 71.0 15.4 101 138-240 37-154 (168)
159 KOG2053 Mitochondrial inherita 98.8 5.5E-06 1.2E-10 78.6 23.4 223 13-241 16-261 (932)
160 PRK15331 chaperone protein Sic 98.7 3.8E-07 8.3E-12 70.6 13.2 107 134-243 35-141 (165)
161 KOG1070 rRNA processing protei 98.7 3.1E-06 6.8E-11 83.4 21.9 219 31-253 1450-1683(1710)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 7.4E-07 1.6E-11 79.6 15.3 116 142-262 175-292 (395)
163 PF13371 TPR_9: Tetratricopept 98.7 8.8E-08 1.9E-12 64.8 7.1 69 212-280 1-71 (73)
164 KOG2796 Uncharacterized conser 98.7 7.2E-06 1.6E-10 67.8 19.1 143 109-251 179-334 (366)
165 PF14938 SNAP: Soluble NSF att 98.7 1.6E-06 3.4E-11 74.8 15.9 131 142-273 81-231 (282)
166 KOG0543 FKBP-type peptidyl-pro 98.6 3.3E-07 7.2E-12 80.0 11.3 115 141-276 213-329 (397)
167 COG3898 Uncharacterized membra 98.6 4.9E-05 1.1E-09 66.3 24.3 225 40-272 120-396 (531)
168 PF12688 TPR_5: Tetratrico pep 98.6 1.6E-06 3.4E-11 64.5 13.0 96 137-234 2-103 (120)
169 PF13512 TPR_18: Tetratricopep 98.6 1.6E-06 3.4E-11 65.7 12.8 65 106-170 9-81 (142)
170 PRK04841 transcriptional regul 98.6 1.7E-05 3.7E-10 79.4 23.8 248 16-267 351-641 (903)
171 PRK11906 transcriptional regul 98.6 8E-06 1.7E-10 73.1 18.9 175 111-288 259-456 (458)
172 KOG1915 Cell cycle control pro 98.6 7E-05 1.5E-09 66.9 24.4 249 19-271 86-355 (677)
173 COG4700 Uncharacterized protei 98.6 2.8E-05 6.1E-10 61.2 19.3 118 134-254 87-207 (251)
174 PF12688 TPR_5: Tetratrico pep 98.6 2.1E-06 4.5E-11 63.8 12.6 105 174-292 5-117 (120)
175 PF13512 TPR_18: Tetratricopep 98.6 2.8E-06 6.2E-11 64.3 13.4 92 186-277 24-138 (142)
176 COG1729 Uncharacterized protei 98.6 3.2E-06 7E-11 70.5 14.3 102 139-244 144-253 (262)
177 COG4700 Uncharacterized protei 98.6 5.9E-06 1.3E-10 65.0 14.6 143 86-234 71-221 (251)
178 PF13428 TPR_14: Tetratricopep 98.5 2.1E-07 4.5E-12 56.3 5.1 43 206-248 1-43 (44)
179 KOG2047 mRNA splicing factor [ 98.5 9.9E-05 2.1E-09 68.1 24.0 215 67-285 345-596 (835)
180 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 6.2E-07 1.3E-11 80.0 9.2 66 202-267 71-141 (453)
181 KOG2047 mRNA splicing factor [ 98.5 0.00016 3.4E-09 66.8 24.0 272 16-291 357-681 (835)
182 COG1729 Uncharacterized protei 98.5 2.7E-06 5.8E-11 71.0 11.5 85 84-170 154-249 (262)
183 PF06552 TOM20_plant: Plant sp 98.5 1.7E-06 3.8E-11 67.6 9.5 89 188-276 7-118 (186)
184 KOG1070 rRNA processing protei 98.4 7.8E-05 1.7E-09 74.0 22.1 199 67-268 1454-1664(1710)
185 COG4105 ComL DNA uptake lipopr 98.4 7.6E-05 1.6E-09 61.9 18.7 155 83-240 46-238 (254)
186 KOG3617 WD40 and TPR repeat-co 98.4 4.1E-05 8.8E-10 72.4 18.9 205 16-232 836-1106(1416)
187 KOG2053 Mitochondrial inherita 98.4 0.00011 2.4E-09 70.0 21.9 186 84-271 22-259 (932)
188 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00027 5.9E-09 56.9 22.1 215 20-238 37-268 (291)
189 COG4785 NlpI Lipoprotein NlpI, 98.4 5.2E-05 1.1E-09 61.2 16.2 193 35-236 60-267 (297)
190 PF05843 Suf: Suppressor of fo 98.4 1.7E-05 3.7E-10 68.3 14.6 141 138-279 3-148 (280)
191 KOG1130 Predicted G-alpha GTPa 98.3 4.5E-06 9.9E-11 73.0 10.4 80 186-265 209-302 (639)
192 KOG4234 TPR repeat-containing 98.3 5.5E-06 1.2E-10 65.8 9.7 56 187-242 149-204 (271)
193 KOG1130 Predicted G-alpha GTPa 98.3 2.2E-06 4.7E-11 75.0 8.1 29 207-235 316-344 (639)
194 KOG2796 Uncharacterized conser 98.3 0.00055 1.2E-08 56.9 20.2 137 139-277 180-325 (366)
195 KOG4648 Uncharacterized conser 98.2 4.4E-06 9.5E-11 71.5 7.4 105 141-247 102-206 (536)
196 PF13431 TPR_17: Tetratricopep 98.2 1.7E-06 3.6E-11 49.1 3.1 33 194-226 1-33 (34)
197 COG4785 NlpI Lipoprotein NlpI, 98.2 6.9E-06 1.5E-10 66.1 7.0 101 139-241 68-168 (297)
198 COG3118 Thioredoxin domain-con 98.1 0.00054 1.2E-08 58.0 18.1 172 87-264 118-299 (304)
199 PF13424 TPR_12: Tetratricopep 98.1 3E-06 6.5E-11 58.0 3.9 60 206-265 5-73 (78)
200 PF07719 TPR_2: Tetratricopept 98.1 8.1E-06 1.7E-10 46.1 4.9 34 206-239 1-34 (34)
201 PF06552 TOM20_plant: Plant sp 98.1 7E-05 1.5E-09 58.8 11.5 98 152-249 7-123 (186)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2E-05 4.4E-10 70.5 9.5 67 133-201 72-141 (453)
203 PF00515 TPR_1: Tetratricopept 98.1 7.8E-06 1.7E-10 46.2 4.3 34 206-239 1-34 (34)
204 KOG4642 Chaperone-dependent E3 98.1 1.9E-05 4.1E-10 64.4 7.8 83 186-268 24-108 (284)
205 KOG4648 Uncharacterized conser 98.1 2.8E-05 6.1E-10 66.7 9.1 100 111-215 101-208 (536)
206 KOG3617 WD40 and TPR repeat-co 98.0 0.0007 1.5E-08 64.4 18.5 164 46-233 806-994 (1416)
207 PF13424 TPR_12: Tetratricopep 98.0 9.2E-06 2E-10 55.5 4.7 62 104-165 2-75 (78)
208 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.7E-09 61.4 13.4 132 74-207 4-142 (280)
209 KOG4555 TPR repeat-containing 98.0 0.00013 2.8E-09 54.1 9.8 93 80-174 52-153 (175)
210 KOG4234 TPR repeat-containing 97.9 0.00025 5.3E-09 56.6 11.8 89 185-273 108-203 (271)
211 KOG1586 Protein required for f 97.9 0.0069 1.5E-07 49.7 19.8 105 139-243 116-232 (288)
212 PF04184 ST7: ST7 protein; In 97.9 0.0017 3.6E-08 58.7 17.0 177 85-273 182-381 (539)
213 KOG4555 TPR repeat-containing 97.9 0.00027 5.8E-09 52.5 9.9 85 184-268 55-145 (175)
214 KOG2610 Uncharacterized conser 97.8 0.0023 5E-08 55.1 16.9 214 19-240 47-283 (491)
215 COG3118 Thioredoxin domain-con 97.8 0.00022 4.8E-09 60.3 10.5 122 43-166 137-266 (304)
216 KOG2610 Uncharacterized conser 97.8 0.0023 5E-08 55.1 16.5 88 144-231 145-234 (491)
217 COG2976 Uncharacterized protei 97.8 0.00061 1.3E-08 54.2 11.8 100 73-175 91-198 (207)
218 PF09613 HrpB1_HrpK: Bacterial 97.8 0.0013 2.8E-08 50.9 12.9 86 185-270 23-109 (160)
219 PF10300 DUF3808: Protein of u 97.7 0.0016 3.4E-08 60.3 15.7 107 148-256 245-356 (468)
220 PF13428 TPR_14: Tetratricopep 97.7 0.00012 2.7E-09 44.0 5.6 35 137-171 2-36 (44)
221 PF13431 TPR_17: Tetratricopep 97.6 6.1E-05 1.3E-09 42.6 3.0 33 94-128 2-34 (34)
222 KOG0376 Serine-threonine phosp 97.6 8.5E-05 1.9E-09 66.5 4.9 105 143-249 11-115 (476)
223 KOG1941 Acetylcholine receptor 97.6 0.0012 2.7E-08 57.3 11.6 230 7-236 7-276 (518)
224 COG3898 Uncharacterized membra 97.6 0.052 1.1E-06 48.0 24.2 215 51-273 95-330 (531)
225 PF10300 DUF3808: Protein of u 97.5 0.0098 2.1E-07 55.1 18.0 150 83-235 200-376 (468)
226 PF13181 TPR_8: Tetratricopept 97.5 0.00018 3.9E-09 40.4 4.1 33 207-239 2-34 (34)
227 PF04184 ST7: ST7 protein; In 97.5 0.0086 1.9E-07 54.3 16.1 169 67-245 198-385 (539)
228 KOG1586 Protein required for f 97.5 0.025 5.3E-07 46.5 16.8 120 142-276 99-233 (288)
229 PF03704 BTAD: Bacterial trans 97.4 0.0033 7.2E-08 48.4 11.5 110 142-266 12-124 (146)
230 PF13174 TPR_6: Tetratricopept 97.4 0.00028 6.1E-09 39.2 4.0 33 207-239 1-33 (33)
231 KOG0545 Aryl-hydrocarbon recep 97.4 0.0033 7.2E-08 51.9 11.5 105 135-241 177-299 (329)
232 PF07719 TPR_2: Tetratricopept 97.4 0.00052 1.1E-08 38.4 4.6 34 136-169 1-34 (34)
233 KOG0985 Vesicle coat protein c 97.3 0.036 7.8E-07 54.4 19.0 119 106-232 1103-1246(1666)
234 KOG0376 Serine-threonine phosp 97.3 0.00043 9.3E-09 62.1 6.0 97 185-281 17-115 (476)
235 PF09613 HrpB1_HrpK: Bacterial 97.3 0.032 6.9E-07 43.3 15.5 110 138-252 12-122 (160)
236 KOG1585 Protein required for f 97.3 0.04 8.6E-07 45.7 16.6 194 40-252 31-240 (308)
237 KOG4642 Chaperone-dependent E3 97.3 0.00071 1.5E-08 55.5 6.6 91 143-235 17-107 (284)
238 COG0790 FOG: TPR repeat, SEL1 97.3 0.09 1.9E-06 45.4 21.6 76 53-132 54-138 (292)
239 COG2976 Uncharacterized protei 97.3 0.0049 1.1E-07 49.1 11.0 99 139-240 92-193 (207)
240 PF00515 TPR_1: Tetratricopept 97.3 0.00062 1.3E-08 38.2 4.4 33 137-169 2-34 (34)
241 PF14561 TPR_20: Tetratricopep 97.3 0.0045 9.8E-08 43.5 9.6 63 192-254 8-72 (90)
242 TIGR02561 HrpB1_HrpK type III 97.3 0.0051 1.1E-07 46.9 10.1 71 186-256 24-94 (153)
243 KOG3616 Selective LIM binding 97.2 0.14 3E-06 48.9 21.2 210 4-232 527-791 (1636)
244 COG4649 Uncharacterized protei 97.2 0.041 8.9E-07 43.2 14.7 136 111-249 62-209 (221)
245 KOG0545 Aryl-hydrocarbon recep 97.2 0.0037 7.9E-08 51.6 9.4 90 185-274 191-300 (329)
246 KOG3616 Selective LIM binding 97.2 0.055 1.2E-06 51.5 18.0 205 13-232 680-908 (1636)
247 COG0790 FOG: TPR repeat, SEL1 97.2 0.13 2.9E-06 44.3 19.9 163 83-254 53-236 (292)
248 PF13176 TPR_7: Tetratricopept 97.1 0.001 2.2E-08 38.0 4.0 32 208-239 1-34 (36)
249 KOG1941 Acetylcholine receptor 97.1 0.015 3.3E-07 50.7 12.4 220 46-265 12-273 (518)
250 PF02259 FAT: FAT domain; Int 97.0 0.13 2.8E-06 45.5 18.8 45 207-251 253-303 (352)
251 KOG2396 HAT (Half-A-TPR) repea 97.0 0.012 2.5E-07 53.4 11.2 89 156-246 91-180 (568)
252 smart00028 TPR Tetratricopepti 96.9 0.0016 3.5E-08 35.0 3.6 33 207-239 2-34 (34)
253 PF13174 TPR_6: Tetratricopept 96.8 0.0018 4E-08 35.8 3.5 32 138-169 2-33 (33)
254 KOG2396 HAT (Half-A-TPR) repea 96.8 0.011 2.4E-07 53.5 10.0 86 189-274 88-176 (568)
255 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0089 1.9E-07 51.5 8.9 70 186-255 95-168 (390)
256 PF13281 DUF4071: Domain of un 96.8 0.16 3.5E-06 45.2 17.1 94 152-246 242-345 (374)
257 PF13181 TPR_8: Tetratricopept 96.7 0.003 6.4E-08 35.3 3.9 32 137-168 2-33 (34)
258 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.012 2.6E-07 36.8 6.8 39 208-246 3-41 (53)
259 PRK10941 hypothetical protein; 96.7 0.025 5.4E-07 48.2 10.9 59 185-243 194-252 (269)
260 KOG1258 mRNA processing protei 96.7 0.43 9.4E-06 44.5 19.3 182 68-254 294-489 (577)
261 PF04053 Coatomer_WDAD: Coatom 96.7 0.16 3.5E-06 46.6 16.7 160 44-231 265-427 (443)
262 KOG3364 Membrane protein invol 96.7 0.053 1.2E-06 40.7 10.9 82 170-251 32-116 (149)
263 KOG1550 Extracellular protein 96.7 0.1 2.3E-06 49.4 15.9 177 56-235 228-426 (552)
264 TIGR02561 HrpB1_HrpK type III 96.6 0.035 7.6E-07 42.4 10.0 81 141-223 15-95 (153)
265 KOG1550 Extracellular protein 96.6 0.12 2.7E-06 48.9 16.1 222 42-272 290-543 (552)
266 PRK10941 hypothetical protein; 96.6 0.017 3.7E-07 49.2 9.1 79 207-285 182-262 (269)
267 KOG3824 Huntingtin interacting 96.6 0.0092 2E-07 50.9 7.2 64 185-248 129-192 (472)
268 KOG2471 TPR repeat-containing 96.6 0.013 2.8E-07 53.0 8.5 127 144-272 214-369 (696)
269 KOG2300 Uncharacterized conser 96.5 0.6 1.3E-05 42.6 18.6 160 111-274 327-524 (629)
270 PF13374 TPR_10: Tetratricopep 96.5 0.0061 1.3E-07 35.6 4.5 29 207-235 3-31 (42)
271 PF13281 DUF4071: Domain of un 96.5 0.56 1.2E-05 41.9 20.6 180 107-287 141-354 (374)
272 KOG1585 Protein required for f 96.5 0.3 6.5E-06 40.7 15.2 78 186-263 124-215 (308)
273 KOG1308 Hsp70-interacting prot 96.5 0.0011 2.4E-08 57.1 1.3 91 146-238 124-214 (377)
274 KOG1914 mRNA cleavage and poly 96.5 0.59 1.3E-05 43.2 18.2 181 87-269 309-503 (656)
275 KOG2471 TPR repeat-containing 96.4 0.015 3.3E-07 52.6 8.1 140 90-250 225-379 (696)
276 PF04910 Tcf25: Transcriptiona 96.4 0.16 3.5E-06 45.4 14.6 106 139-245 106-232 (360)
277 COG4649 Uncharacterized protei 96.4 0.36 7.8E-06 38.1 15.3 116 49-164 67-195 (221)
278 PF03704 BTAD: Bacterial trans 96.4 0.019 4.2E-07 44.0 7.5 57 108-164 63-124 (146)
279 PF08424 NRDE-2: NRDE-2, neces 96.3 0.45 9.8E-06 41.8 16.7 104 133-236 62-184 (321)
280 KOG3824 Huntingtin interacting 96.3 0.015 3.1E-07 49.8 6.8 64 212-275 122-187 (472)
281 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.79 1.7E-05 41.6 17.7 201 71-277 302-541 (660)
282 KOG0530 Protein farnesyltransf 96.2 0.64 1.4E-05 39.1 15.7 161 87-251 59-232 (318)
283 KOG2041 WD40 repeat protein [G 96.1 0.18 3.9E-06 47.8 13.4 170 103-291 689-875 (1189)
284 PF08424 NRDE-2: NRDE-2, neces 96.1 0.85 1.8E-05 40.1 17.3 175 92-287 6-206 (321)
285 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.024 5.3E-07 35.4 5.4 42 241-282 2-45 (53)
286 PF14561 TPR_20: Tetratricopep 96.0 0.047 1E-06 38.3 7.3 61 91-153 8-75 (90)
287 KOG1258 mRNA processing protei 96.0 1.4 3E-05 41.3 18.9 177 42-220 299-489 (577)
288 KOG0551 Hsp90 co-chaperone CNS 96.0 0.26 5.6E-06 42.8 12.9 90 77-166 87-183 (390)
289 PF11207 DUF2989: Protein of u 96.0 0.32 7E-06 39.3 12.7 65 89-155 124-197 (203)
290 KOG0985 Vesicle coat protein c 95.9 2.1 4.5E-05 42.8 23.7 198 41-254 1105-1327(1666)
291 KOG1914 mRNA cleavage and poly 95.9 1.4 3.1E-05 40.8 17.9 169 93-267 267-464 (656)
292 PF02259 FAT: FAT domain; Int 95.9 0.37 8E-06 42.5 14.4 116 104-219 143-305 (352)
293 PF04190 DUF410: Protein of un 95.9 0.79 1.7E-05 39.0 15.6 135 104-254 87-242 (260)
294 KOG4507 Uncharacterized conser 95.8 0.046 1E-06 50.7 8.0 102 186-287 621-727 (886)
295 KOG1308 Hsp70-interacting prot 95.8 0.005 1.1E-07 53.2 1.7 81 186-266 128-210 (377)
296 PF10602 RPN7: 26S proteasome 95.7 0.15 3.2E-06 40.7 9.8 61 72-132 37-98 (177)
297 COG3914 Spy Predicted O-linked 95.6 0.38 8.2E-06 44.8 13.3 138 117-256 41-192 (620)
298 KOG3364 Membrane protein invol 95.6 0.27 5.9E-06 37.0 10.1 77 205-281 31-114 (149)
299 COG4976 Predicted methyltransf 95.6 0.02 4.4E-07 46.9 4.5 59 183-241 6-64 (287)
300 KOG1538 Uncharacterized conser 95.5 0.29 6.4E-06 46.1 12.1 172 44-232 636-830 (1081)
301 PF13176 TPR_7: Tetratricopept 95.5 0.029 6.3E-07 31.8 3.7 27 139-165 2-28 (36)
302 PF04053 Coatomer_WDAD: Coatom 95.4 0.35 7.7E-06 44.4 12.6 134 13-167 268-404 (443)
303 KOG2041 WD40 repeat protein [G 95.4 0.54 1.2E-05 44.8 13.3 162 49-232 769-936 (1189)
304 KOG1464 COP9 signalosome, subu 95.2 1.7 3.6E-05 36.9 15.1 243 20-277 41-342 (440)
305 smart00028 TPR Tetratricopepti 95.2 0.04 8.7E-07 29.1 3.7 31 138-168 3-33 (34)
306 PF04781 DUF627: Protein of un 95.1 0.41 8.8E-06 34.7 9.5 93 143-235 3-107 (111)
307 PF08631 SPO22: Meiosis protei 95.1 1.9 4.1E-05 37.1 20.3 215 17-233 4-273 (278)
308 KOG4507 Uncharacterized conser 95.1 0.2 4.3E-06 46.6 9.6 98 148-249 619-719 (886)
309 KOG2300 Uncharacterized conser 95.0 1 2.2E-05 41.2 13.7 180 77-256 329-541 (629)
310 PF04348 LppC: LppC putative l 94.9 0.0068 1.5E-07 57.0 0.0 37 241-277 165-204 (536)
311 PF08631 SPO22: Meiosis protei 94.9 2.2 4.7E-05 36.7 16.3 50 83-132 5-61 (278)
312 COG5191 Uncharacterized conser 94.9 0.08 1.7E-06 45.4 6.1 64 185-248 120-184 (435)
313 PF07079 DUF1347: Protein of u 94.9 0.71 1.5E-05 41.9 12.2 28 143-170 386-414 (549)
314 PF04910 Tcf25: Transcriptiona 94.8 2.9 6.2E-05 37.4 17.6 161 103-270 36-225 (360)
315 COG5191 Uncharacterized conser 94.6 0.042 9.2E-07 47.1 3.9 81 194-274 95-178 (435)
316 COG4976 Predicted methyltransf 94.6 0.048 1E-06 44.7 4.1 63 214-276 3-67 (287)
317 PF07720 TPR_3: Tetratricopept 94.6 0.15 3.2E-06 29.0 4.9 33 207-239 2-36 (36)
318 PF10345 Cohesin_load: Cohesin 94.4 5.1 0.00011 38.6 19.1 144 88-234 38-207 (608)
319 KOG2114 Vacuolar assembly/sort 94.4 4.2 9.1E-05 39.8 16.8 216 12-241 340-596 (933)
320 PF07721 TPR_4: Tetratricopept 94.3 0.077 1.7E-06 27.6 3.1 23 109-131 3-25 (26)
321 PF10602 RPN7: 26S proteasome 94.2 0.53 1.1E-05 37.5 9.3 94 107-202 36-143 (177)
322 KOG1538 Uncharacterized conser 94.1 3.6 7.9E-05 39.2 15.3 179 6-198 632-830 (1081)
323 COG2909 MalT ATP-dependent tra 93.9 5.2 0.00011 39.4 16.5 158 104-267 344-526 (894)
324 PF10345 Cohesin_load: Cohesin 93.9 6.5 0.00014 37.9 23.2 130 34-164 53-207 (608)
325 COG3107 LppC Putative lipoprot 93.8 3.5 7.6E-05 38.3 14.4 180 85-277 41-242 (604)
326 COG2909 MalT ATP-dependent tra 93.6 8.3 0.00018 38.1 21.2 149 82-237 469-649 (894)
327 PRK13184 pknD serine/threonine 93.5 2 4.4E-05 43.1 13.6 98 144-242 483-588 (932)
328 PF07721 TPR_4: Tetratricopept 93.5 0.1 2.3E-06 27.1 2.7 25 207-231 2-26 (26)
329 PF07079 DUF1347: Protein of u 93.3 2.8 6.1E-05 38.1 12.7 119 143-266 13-156 (549)
330 COG5107 RNA14 Pre-mRNA 3'-end 93.2 6.6 0.00014 35.9 15.2 172 93-266 290-494 (660)
331 PRK15180 Vi polysaccharide bio 93.2 0.55 1.2E-05 42.9 8.3 110 133-245 320-430 (831)
332 PF12862 Apc5: Anaphase-promot 93.1 1.2 2.6E-05 31.3 8.6 49 117-165 8-70 (94)
333 PF13041 PPR_2: PPR repeat fam 93.1 0.34 7.4E-06 29.5 5.1 41 69-109 1-41 (50)
334 KOG0276 Vesicle coat complex C 93.0 4.3 9.3E-05 38.3 13.7 156 46-232 592-747 (794)
335 COG3914 Spy Predicted O-linked 92.7 8.9 0.00019 36.1 18.7 122 102-223 60-193 (620)
336 KOG1310 WD40 repeat protein [G 92.7 0.5 1.1E-05 43.6 7.3 90 187-276 389-483 (758)
337 KOG0530 Protein farnesyltransf 92.3 6.3 0.00014 33.4 12.9 100 145-245 52-152 (318)
338 KOG0890 Protein kinase of the 92.2 21 0.00046 39.2 22.3 113 14-131 1391-1507(2382)
339 smart00386 HAT HAT (Half-A-TPR 92.1 0.48 1.1E-05 25.4 4.5 29 220-248 1-29 (33)
340 COG2912 Uncharacterized conser 92.1 1.4 3.1E-05 37.3 9.0 58 186-243 195-252 (269)
341 COG2912 Uncharacterized conser 92.0 2.2 4.7E-05 36.2 9.9 77 208-284 183-261 (269)
342 PF09986 DUF2225: Uncharacteri 91.9 5.9 0.00013 32.6 12.3 61 188-248 141-208 (214)
343 COG3629 DnrI DNA-binding trans 91.8 1.4 2.9E-05 37.8 8.6 50 186-235 167-216 (280)
344 KOG1839 Uncharacterized protei 91.7 3.3 7.1E-05 42.4 12.2 159 6-165 931-1128(1236)
345 PF10373 EST1_DNA_bind: Est1 D 91.6 0.89 1.9E-05 38.7 7.6 62 191-252 1-62 (278)
346 KOG0890 Protein kinase of the 91.5 1.5 3.3E-05 47.3 10.1 138 112-256 1388-1534(2382)
347 PF13374 TPR_10: Tetratricopep 91.1 0.51 1.1E-05 27.0 4.1 28 138-165 4-31 (42)
348 PF10516 SHNi-TPR: SHNi-TPR; 91.0 0.43 9.4E-06 27.5 3.4 30 207-236 2-31 (38)
349 PF04190 DUF410: Protein of un 90.6 9.7 0.00021 32.4 16.5 92 124-235 74-170 (260)
350 COG5159 RPN6 26S proteasome re 90.6 10 0.00022 32.6 13.4 160 75-234 7-193 (421)
351 PF12862 Apc5: Anaphase-promot 90.4 1.1 2.3E-05 31.6 5.8 53 186-238 12-73 (94)
352 PRK13184 pknD serine/threonine 90.2 1.5 3.2E-05 44.1 8.4 91 186-277 489-591 (932)
353 KOG4814 Uncharacterized conser 89.9 19 0.00041 34.5 16.5 84 47-132 361-453 (872)
354 smart00386 HAT HAT (Half-A-TPR 89.5 1 2.2E-05 24.0 4.2 29 187-215 2-30 (33)
355 PRK12798 chemotaxis protein; R 89.3 17 0.00036 33.0 20.5 184 46-236 86-287 (421)
356 TIGR02508 type_III_yscG type I 89.1 2.7 5.8E-05 30.0 6.7 76 22-99 21-96 (115)
357 PF12854 PPR_1: PPR repeat 88.8 1.1 2.3E-05 24.9 3.9 27 106-132 6-32 (34)
358 TIGR03504 FimV_Cterm FimV C-te 88.8 1 2.2E-05 26.9 3.9 25 210-234 3-27 (44)
359 PF11207 DUF2989: Protein of u 88.7 12 0.00025 30.5 12.6 68 188-256 122-194 (203)
360 KOG2114 Vacuolar assembly/sort 88.3 10 0.00022 37.2 12.1 163 115-290 342-512 (933)
361 PF12854 PPR_1: PPR repeat 88.2 1.4 3.1E-05 24.4 4.1 28 204-231 5-32 (34)
362 PF09986 DUF2225: Uncharacteri 88.0 6.8 0.00015 32.3 9.7 82 187-268 92-195 (214)
363 TIGR03504 FimV_Cterm FimV C-te 88.0 0.58 1.2E-05 27.9 2.5 22 77-98 5-26 (44)
364 PRK15180 Vi polysaccharide bio 87.5 6.8 0.00015 36.1 9.9 30 214-243 365-394 (831)
365 PF07720 TPR_3: Tetratricopept 87.3 2.3 5E-05 24.1 4.6 20 139-158 4-23 (36)
366 cd00280 TRFH Telomeric Repeat 86.9 9.7 0.00021 30.5 9.3 59 188-247 85-151 (200)
367 KOG2581 26S proteasome regulat 86.7 24 0.00052 31.9 15.9 148 109-256 127-303 (493)
368 COG3947 Response regulator con 86.7 3.4 7.4E-05 35.5 7.2 58 208-265 281-340 (361)
369 PRK09687 putative lyase; Provi 86.6 20 0.00043 30.9 22.6 219 41-275 38-270 (280)
370 KOG4814 Uncharacterized conser 86.4 5.4 0.00012 38.0 8.9 88 111-200 358-456 (872)
371 COG3629 DnrI DNA-binding trans 86.3 2.8 6E-05 36.0 6.6 75 87-165 137-216 (280)
372 KOG1310 WD40 repeat protein [G 86.3 3.2 7E-05 38.5 7.3 92 150-241 388-480 (758)
373 KOG2422 Uncharacterized conser 86.3 31 0.00066 32.7 15.1 134 103-238 280-451 (665)
374 COG4259 Uncharacterized protei 86.2 3.2 7E-05 29.5 5.7 56 226-281 57-115 (121)
375 PF13226 DUF4034: Domain of un 86.2 19 0.00042 30.9 11.6 36 221-256 114-149 (277)
376 PF10579 Rapsyn_N: Rapsyn N-te 85.9 6.9 0.00015 26.6 7.0 30 214-243 14-43 (80)
377 KOG0276 Vesicle coat complex C 85.7 25 0.00054 33.5 12.7 21 110-130 617-637 (794)
378 PF10516 SHNi-TPR: SHNi-TPR; 84.9 2.2 4.8E-05 24.5 3.8 29 137-165 2-30 (38)
379 PF10255 Paf67: RNA polymerase 84.3 2.3 5E-05 38.5 5.5 54 111-164 126-192 (404)
380 PF04348 LppC: LppC putative l 84.1 0.32 6.9E-06 45.9 0.0 89 76-164 29-126 (536)
381 PF04781 DUF627: Protein of un 83.3 11 0.00024 27.4 7.6 64 185-248 9-86 (111)
382 PF08311 Mad3_BUB1_I: Mad3/BUB 83.2 17 0.00036 27.1 13.1 81 150-233 40-126 (126)
383 PF11846 DUF3366: Domain of un 82.2 6.7 0.00014 31.5 7.0 50 188-238 127-176 (193)
384 PF09205 DUF1955: Domain of un 82.1 19 0.00041 27.3 8.6 51 186-236 100-150 (161)
385 PF12968 DUF3856: Domain of Un 80.5 21 0.00046 26.5 11.7 58 207-264 56-126 (144)
386 PRK11619 lytic murein transgly 80.2 61 0.0013 31.6 24.9 113 10-132 37-154 (644)
387 KOG3783 Uncharacterized conser 80.0 53 0.0012 30.8 21.0 66 208-273 451-526 (546)
388 TIGR03362 VI_chp_7 type VI sec 79.4 29 0.00063 30.3 10.3 52 114-165 220-279 (301)
389 COG1747 Uncharacterized N-term 78.9 58 0.0013 30.6 19.6 201 76-287 71-285 (711)
390 PRK12798 chemotaxis protein; R 78.7 52 0.0011 29.9 20.1 232 5-243 79-334 (421)
391 PF01535 PPR: PPR repeat; Int 78.3 4.3 9.2E-05 21.2 3.3 24 141-164 5-28 (31)
392 KOG1920 IkappaB kinase complex 77.7 49 0.0011 34.1 12.3 25 140-164 1003-1027(1265)
393 TIGR00756 PPR pentatricopeptid 77.5 4 8.7E-05 21.8 3.2 28 77-104 6-33 (35)
394 PF10579 Rapsyn_N: Rapsyn N-te 77.1 14 0.0003 25.1 6.0 47 186-232 20-69 (80)
395 KOG1497 COP9 signalosome, subu 77.1 51 0.0011 29.0 11.1 93 108-200 104-212 (399)
396 KOG1920 IkappaB kinase complex 76.8 44 0.00095 34.5 11.7 113 108-232 940-1052(1265)
397 PF13041 PPR_2: PPR repeat fam 76.7 7.8 0.00017 23.2 4.5 32 205-236 2-33 (50)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 76.5 12 0.00027 27.8 6.4 44 89-132 81-124 (126)
399 KOG1839 Uncharacterized protei 76.1 53 0.0011 34.2 12.2 150 84-234 945-1127(1236)
400 PF13812 PPR_3: Pentatricopept 75.7 4.3 9.4E-05 21.8 2.9 25 77-101 7-31 (34)
401 KOG0687 26S proteasome regulat 75.6 33 0.00073 30.1 9.3 100 104-203 101-212 (393)
402 cd02682 MIT_AAA_Arch MIT: doma 75.2 22 0.00048 23.9 6.9 35 209-243 9-50 (75)
403 COG4455 ImpE Protein of avirul 75.1 8.7 0.00019 31.7 5.5 61 144-206 9-69 (273)
404 PF15015 NYD-SP12_N: Spermatog 75.1 17 0.00037 33.0 7.7 50 141-192 233-282 (569)
405 PF14852 Fis1_TPR_N: Fis1 N-te 74.2 6.8 0.00015 22.0 3.4 30 207-236 2-34 (35)
406 COG4455 ImpE Protein of avirul 74.1 21 0.00046 29.6 7.4 56 185-240 14-69 (273)
407 COG1747 Uncharacterized N-term 73.6 82 0.0018 29.7 16.9 168 68-241 96-294 (711)
408 PF09670 Cas_Cas02710: CRISPR- 73.6 59 0.0013 29.4 11.1 59 141-201 136-198 (379)
409 PF11817 Foie-gras_1: Foie gra 73.6 19 0.00041 30.3 7.6 27 139-165 181-207 (247)
410 PF10373 EST1_DNA_bind: Est1 D 73.1 15 0.00033 31.0 7.0 41 225-265 1-43 (278)
411 PF09205 DUF1955: Domain of un 73.0 22 0.00048 27.0 6.7 119 145-267 11-149 (161)
412 PF14863 Alkyl_sulf_dimr: Alky 72.8 16 0.00035 27.9 6.2 50 206-255 70-119 (141)
413 COG4941 Predicted RNA polymera 71.9 72 0.0016 28.3 16.1 58 188-245 345-404 (415)
414 PF12968 DUF3856: Domain of Un 71.7 39 0.00084 25.1 10.9 44 191-234 81-128 (144)
415 KOG0529 Protein geranylgeranyl 71.4 80 0.0017 28.7 12.7 167 88-273 46-230 (421)
416 smart00777 Mad3_BUB1_I Mad3/BU 71.3 24 0.00053 26.3 6.8 56 71-132 69-124 (125)
417 PF10255 Paf67: RNA polymerase 70.6 6 0.00013 35.9 4.0 59 74-132 125-189 (404)
418 KOG0687 26S proteasome regulat 68.9 83 0.0018 27.8 10.5 103 134-238 102-213 (393)
419 COG4499 Predicted membrane pro 68.8 33 0.00072 30.7 7.9 16 117-132 323-338 (434)
420 PF09797 NatB_MDM20: N-acetylt 68.1 72 0.0016 28.5 10.5 44 153-198 200-243 (365)
421 COG5187 RPN7 26S proteasome re 68.0 77 0.0017 27.6 9.7 100 104-203 112-223 (412)
422 COG3107 LppC Putative lipoprot 67.6 1.1E+02 0.0024 28.8 14.0 159 74-243 66-240 (604)
423 COG3947 Response regulator con 67.1 41 0.00089 29.2 7.9 49 184-232 291-339 (361)
424 cd07642 BAR_ASAP2 The Bin/Amph 66.5 22 0.00047 29.2 6.0 71 221-291 41-120 (215)
425 PRK11619 lytic murein transgly 63.4 1.5E+02 0.0033 28.9 15.9 122 109-236 35-159 (644)
426 KOG2422 Uncharacterized conser 63.2 1.4E+02 0.0031 28.5 16.6 135 133-269 281-450 (665)
427 KOG1076 Translation initiation 62.7 1.6E+02 0.0035 28.9 12.1 132 111-243 534-693 (843)
428 PF09797 NatB_MDM20: N-acetylt 62.6 54 0.0012 29.3 8.6 44 87-132 199-242 (365)
429 PF00637 Clathrin: Region in C 61.2 0.81 1.7E-05 34.8 -3.0 132 7-151 7-140 (143)
430 PHA02537 M terminase endonucle 61.0 97 0.0021 25.8 9.4 31 208-238 171-210 (230)
431 KOG0529 Protein geranylgeranyl 60.5 1.3E+02 0.0029 27.3 11.3 122 151-272 44-183 (421)
432 smart00777 Mad3_BUB1_I Mad3/BU 60.3 69 0.0015 23.9 7.6 44 188-231 79-124 (125)
433 PF07219 HemY_N: HemY protein 60.3 42 0.00091 24.1 6.1 47 208-254 61-107 (108)
434 KOG4279 Serine/threonine prote 59.5 48 0.001 32.6 7.7 108 43-151 204-335 (1226)
435 PF12583 TPPII_N: Tripeptidyl 59.4 43 0.00093 25.2 5.9 39 214-252 84-122 (139)
436 smart00299 CLH Clathrin heavy 59.2 72 0.0016 23.7 11.4 25 121-145 110-134 (140)
437 smart00299 CLH Clathrin heavy 58.6 74 0.0016 23.7 15.0 47 82-131 18-64 (140)
438 PF10140 YukC: WXG100 protein 57.3 3.5 7.6E-05 36.7 0.0 14 119-132 299-312 (359)
439 TIGR02498 type_III_ssaH type I 56.8 59 0.0013 22.0 6.5 55 87-143 22-76 (79)
440 KOG0292 Vesicle coat complex C 55.3 1.1E+02 0.0024 30.9 9.4 126 85-235 657-782 (1202)
441 PF00244 14-3-3: 14-3-3 protei 55.1 1.2E+02 0.0027 25.2 9.2 46 189-234 143-197 (236)
442 PF04212 MIT: MIT (microtubule 54.9 27 0.00059 22.7 4.1 25 210-234 9-33 (69)
443 KOG0546 HSP90 co-chaperone CPR 54.5 13 0.00028 32.9 2.9 62 187-248 290-351 (372)
444 KOG4322 Anaphase-promoting com 54.4 1.7E+02 0.0036 27.0 9.8 48 17-66 252-299 (482)
445 KOG3783 Uncharacterized conser 53.5 1.9E+02 0.0042 27.3 10.4 80 133-216 264-348 (546)
446 PF11817 Foie-gras_1: Foie gra 53.4 34 0.00074 28.8 5.4 75 56-130 161-241 (247)
447 PF10938 YfdX: YfdX protein; 53.4 58 0.0013 25.3 6.3 59 106-164 74-145 (155)
448 PF11846 DUF3366: Domain of un 52.2 50 0.0011 26.4 6.0 36 133-168 141-176 (193)
449 KOG2581 26S proteasome regulat 51.1 2E+02 0.0043 26.4 11.8 128 146-273 136-282 (493)
450 PF04097 Nic96: Nup93/Nic96; 50.1 2.5E+02 0.0054 27.3 13.6 20 252-272 517-538 (613)
451 cd02682 MIT_AAA_Arch MIT: doma 49.6 78 0.0017 21.3 6.3 20 188-207 29-48 (75)
452 cd02681 MIT_calpain7_1 MIT: do 49.3 35 0.00076 23.0 3.9 27 209-235 9-35 (76)
453 KOG2561 Adaptor protein NUB1, 49.1 1.2E+02 0.0027 27.9 8.2 66 170-235 208-296 (568)
454 PF00637 Clathrin: Region in C 48.1 19 0.00041 27.0 2.8 79 80-160 16-94 (143)
455 cd02683 MIT_1 MIT: domain cont 47.7 35 0.00076 23.0 3.7 24 211-234 11-34 (77)
456 PF10037 MRP-S27: Mitochondria 47.7 1.1E+02 0.0024 28.2 7.9 56 45-100 108-167 (429)
457 cd07641 BAR_ASAP1 The Bin/Amph 47.5 81 0.0018 25.9 6.3 18 274-291 102-120 (215)
458 cd02680 MIT_calpain7_2 MIT: do 46.4 41 0.00088 22.6 3.8 22 214-235 14-35 (75)
459 PF13934 ELYS: Nuclear pore co 46.2 1.7E+02 0.0037 24.2 9.3 104 88-200 63-168 (226)
460 PRK15490 Vi polysaccharide bio 46.1 2.1E+02 0.0045 27.5 9.7 81 146-230 18-98 (578)
461 PF10037 MRP-S27: Mitochondria 45.2 1E+02 0.0022 28.4 7.4 56 76-132 108-163 (429)
462 PF04097 Nic96: Nup93/Nic96; 45.1 3E+02 0.0065 26.7 12.9 30 213-243 512-541 (613)
463 PF02184 HAT: HAT (Half-A-TPR) 44.7 54 0.0012 18.0 3.6 17 188-204 3-19 (32)
464 PF02064 MAS20: MAS20 protein 44.6 46 0.001 24.7 4.2 33 210-242 67-99 (121)
465 smart00671 SEL1 Sel1-like repe 43.8 51 0.0011 17.5 3.8 13 221-233 20-32 (36)
466 PF14863 Alkyl_sulf_dimr: Alky 43.7 1.5E+02 0.0031 22.7 7.8 34 137-170 71-104 (141)
467 PF09477 Type_III_YscG: Bacter 43.5 1.3E+02 0.0028 22.0 10.9 77 85-164 20-97 (116)
468 PRK15490 Vi polysaccharide bio 42.9 1.7E+02 0.0037 28.1 8.6 79 116-198 17-100 (578)
469 KOG4279 Serine/threonine prote 42.7 54 0.0012 32.3 5.3 120 135-256 200-336 (1226)
470 PF09670 Cas_Cas02710: CRISPR- 41.8 2.4E+02 0.0052 25.5 9.2 52 184-235 143-198 (379)
471 PF06287 DUF1039: Protein of u 41.7 99 0.0021 20.2 6.4 40 103-142 23-62 (66)
472 PF04762 IKI3: IKI3 family; I 41.7 2.4E+02 0.0051 29.0 10.0 41 186-231 886-926 (928)
473 PF09477 Type_III_YscG: Bacter 41.7 1.4E+02 0.003 21.8 12.3 92 180-278 14-107 (116)
474 PRK15356 type III secretion sy 41.6 1.1E+02 0.0023 20.5 6.8 41 103-143 24-64 (75)
475 KOG1463 26S proteasome regulat 41.2 2.6E+02 0.0057 25.0 13.4 127 108-234 49-196 (411)
476 KOG4151 Myosin assembly protei 41.1 1.2E+02 0.0026 29.9 7.3 61 182-242 103-163 (748)
477 PF01239 PPTA: Protein prenylt 41.0 57 0.0012 17.2 4.5 25 226-250 3-27 (31)
478 COG5187 RPN7 26S proteasome re 40.8 2.5E+02 0.0054 24.6 11.2 104 135-240 114-226 (412)
479 KOG1464 COP9 signalosome, subu 40.5 2.4E+02 0.0053 24.4 13.7 26 73-98 67-92 (440)
480 TIGR02710 CRISPR-associated pr 39.8 2.9E+02 0.0063 25.0 9.3 125 166-290 124-268 (380)
481 KOG0686 COP9 signalosome, subu 38.9 1.9E+02 0.0042 26.4 7.8 134 108-243 151-312 (466)
482 COG5536 BET4 Protein prenyltra 38.4 2.3E+02 0.005 24.5 7.8 120 154-273 92-228 (328)
483 smart00745 MIT Microtubule Int 38.3 80 0.0017 20.8 4.4 22 213-234 15-36 (77)
484 COG5600 Transcription-associat 38.2 3.1E+02 0.0066 24.8 11.3 112 179-290 184-312 (413)
485 cd02679 MIT_spastin MIT: domai 38.0 71 0.0015 21.7 4.0 33 188-235 5-37 (79)
486 cd00280 TRFH Telomeric Repeat 37.6 2.2E+02 0.0048 23.0 8.9 25 183-208 122-146 (200)
487 PF15297 CKAP2_C: Cytoskeleton 37.3 2.5E+02 0.0055 25.0 8.2 56 188-243 119-177 (353)
488 cd02678 MIT_VPS4 MIT: domain c 36.7 69 0.0015 21.2 3.8 23 212-234 12-34 (75)
489 KOG0546 HSP90 co-chaperone CPR 36.7 17 0.00037 32.1 1.0 70 207-276 276-347 (372)
490 PF08238 Sel1: Sel1 repeat; I 35.7 77 0.0017 17.2 4.0 12 222-233 24-35 (39)
491 COG3014 Uncharacterized protei 35.6 3.3E+02 0.0071 24.4 8.7 118 40-169 125-246 (449)
492 PF15015 NYD-SP12_N: Spermatog 34.4 3.8E+02 0.0082 24.8 11.5 87 142-232 182-288 (569)
493 COG4259 Uncharacterized protei 34.0 1.8E+02 0.0039 20.9 6.1 49 194-242 59-108 (121)
494 cd02684 MIT_2 MIT: domain cont 34.0 99 0.0021 20.6 4.2 22 213-234 13-34 (75)
495 KOG1463 26S proteasome regulat 33.8 3.5E+02 0.0076 24.2 19.7 236 10-247 8-292 (411)
496 KOG0686 COP9 signalosome, subu 33.8 2.2E+02 0.0049 26.0 7.4 20 46-65 156-175 (466)
497 PF12753 Nro1: Nuclear pore co 33.5 1E+02 0.0022 28.0 5.2 33 222-256 334-366 (404)
498 PF15469 Sec5: Exocyst complex 33.4 2.4E+02 0.0052 22.2 9.0 20 146-165 96-115 (182)
499 PF00244 14-3-3: 14-3-3 protei 33.3 2.9E+02 0.0062 23.1 13.4 42 223-264 143-195 (236)
500 cd02656 MIT MIT: domain contai 33.0 1.1E+02 0.0024 20.1 4.4 23 212-234 12-34 (75)
No 1
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=100.00 E-value=1.1e-39 Score=279.43 Aligned_cols=286 Identities=54% Similarity=0.874 Sum_probs=254.1
Q ss_pred CCchhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCC
Q 022777 7 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~ 86 (292)
++++|.|+.+|+.|+|.+||...++...+|+...+..++++|+|+.+|+++.++..+....+|...++..++.++...++
T Consensus 2 ~deLf~vrn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 2 SDELFTVRNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp --TTHHHHHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTT
T ss_pred chHHHHHHHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccc
Confidence 57899999999999999999763455567777889999999999999999999999877677888899999999887778
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
.+.++..+++.+..+..+.++.+.+..|.++...|++++|++.+.+..+.|+..+..++++++++++.|.+.++.+.+.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88999999888876434457788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
+|++..+++.+|+++..|.+++.+|+.+|+++.+.+|.++..++++|+|.+.+|+|++|++.+++++..+|++++++.|+
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc---HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhcC
Q 022777 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292 (292)
Q Consensus 247 ~~~~~~~g~~---a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
+++....|++ +.++++++...+|+||++.++..+.+.||+++++|+
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~~ky~ 290 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAVAKYA 290 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988 789999999999999999999999999999999996
No 2
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-36 Score=242.27 Aligned_cols=287 Identities=55% Similarity=0.855 Sum_probs=261.5
Q ss_pred ccCCCchhhhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhc
Q 022777 4 AAAPDHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLS 82 (292)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~ 82 (292)
+|..+++|+|+.+|+.|+|.+||.... ... ++. ..+..++++|+|+.+|++...+..++....+...+++.++.++.
T Consensus 6 ~g~~d~LF~iRn~fY~Gnyq~~ine~~~~~~-~~~-~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 6 AGPEDELFNIRNYFYLGNYQQCINEAEKFSS-SKT-DVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLE 83 (299)
T ss_pred cCcchhHHHHHHHHHhhHHHHHHHHHHhhcc-ccc-hhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhh
Confidence 455589999999999999999999843 333 333 57888999999999999999999888777777889999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAM 162 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~ 162 (292)
..++.++-+..+.+.+.......+...+..-|.+++..|++++|++.+....+.++..+-.+|+.++.+++-|++.++++
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777776533444667778888999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 163 QQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 163 ~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
.+++.+.++.+++.+|+.+..|.+++.+|+.+|+++.+..|..+..+++.++|.+.+|+|++|+..++.+|..+|++|++
T Consensus 164 q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 164 QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc---HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhcC
Q 022777 243 LANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292 (292)
Q Consensus 243 ~~~l~~~~~~~g~~---a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
+.|+.++....|++ ..+++.++...+|+||+|.++.++...||+++.+|.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~qy~ 296 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVLQYD 296 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998 778999999999999999999999999999999884
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1e-27 Score=213.50 Aligned_cols=258 Identities=14% Similarity=0.058 Sum_probs=236.9
Q ss_pred hhhhhhhh-hccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCC
Q 022777 11 FNLRNNFY-LGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPD 85 (292)
Q Consensus 11 ~~~~~~~~-~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~ 85 (292)
.+++..|. +|+...||.. .+..+++|. -.++++-+|.+|-..+.++.|+..+.++ .|....++..+|.+|..+|
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG 300 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQG 300 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccc
Confidence 45666666 7999999998 458899998 7899999999999999999999999988 4556889999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHH
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLR 160 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 160 (292)
..+-||..|+++++. .|+.++++..+|..+...|+..+|..+|.+ |.++++...+|.+|..+|++++|...|+
T Consensus 301 ~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 301 LLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999999 999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 161 AMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 161 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
.++...|+-....-.++ .+++.+|++++|+.+|++++...|..++++.++|.+|..+|+.+.|+..|.+|+..+|...
T Consensus 379 ~al~v~p~~aaa~nNLa--~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLA--SIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred HHHhhChhhhhhhhhHH--HHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 99999998753333223 3345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 241 ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 241 ~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
+++.|||.++...|+. |+..+++++++.|+.|.
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999997 99999999999999996
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-27 Score=211.52 Aligned_cols=274 Identities=16% Similarity=0.091 Sum_probs=141.1
Q ss_pred hhhhhhhhh-hccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCC
Q 022777 10 LFNLRNNFY-LGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSP 84 (292)
Q Consensus 10 ~~~~~~~~~-~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~ 84 (292)
+.+....++ .|+.+.|+.... .++++|+ .+++++-+|.++...|+.+.|...+..+ +|...-+...++.++..+
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 344555555 688888888844 7777888 5888888888888888888777666544 333344444444444444
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
|+.++|...|.++++. +|....+|..||-++..+|+...|+..|.+ |..+++++.+|.+|...+.+++|+..|
T Consensus 198 Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred cccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 5555555555555444 444444444444444444554444444444 444444555555555555555555555
Q ss_pred HHHHhhCCCcHHHHHHHHHHHH---HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 160 RAMQQIDEDHTLTQLANAWLNL---AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 160 ~~~~~~~p~~~~~~l~~a~~~l---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
.+++...|++.. ++.++ +-++|.++-|+..|+++++.+|+.+++++++|..+...|+..+|+..|.++|.+.
T Consensus 276 ~rAl~lrpn~A~-----a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 276 LRALNLRPNHAV-----AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHhcCCcchh-----hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 555544444421 11111 1123344444444444444444444444444444444444444444444444444
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh----HHhHHhhHHHHHHHHhhc
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML----VKRASSGDESFERALQSV 291 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~~~ 291 (292)
|+++++++|||.++.++|+. |.+++.++++.+|.-.. ...+.+..+.+++|+..|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 44444444444444444443 44444444444444332 222344444444444443
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=7.6e-26 Score=215.42 Aligned_cols=269 Identities=14% Similarity=0.019 Sum_probs=180.2
Q ss_pred hhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHH
Q 022777 17 FYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTIS 92 (292)
Q Consensus 17 ~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~ 92 (292)
...|++++|++..+ +...+|+ +..++..++.++...|++++|+..++++ .|.+..++..++.++...|++++|+.
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 44566666666533 5555665 3555666666666666666666666554 34445555556665555666666666
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----C-CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----G-GTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~-~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
.+.+++.. .|+++.++..++ .+...|++++|+..+++ + ........++.++...|++++|+..++++++.+
T Consensus 166 ~~~~~~~~--~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 166 LARTQAQE--VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHh--CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66655555 555555554433 35556666666665554 1 122233444667777788888888888888887
Q ss_pred CCcHHHHHHHHHHHHHhccccHHH----HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQE----AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
|++......++.++.. .|++++ |+..|++++...|+++.++..+|.++...|++++|+..+++++.++|+++.+
T Consensus 243 p~~~~~~~~Lg~~l~~--~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 243 LDGAALRRSLGLAYYQ--SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred CCCHHHHHHHHHHHHH--cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7776555555544443 345664 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH----hHHhhHHHHHHHHhhc
Q 022777 243 LANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK----RASSGDESFERALQSV 291 (292)
Q Consensus 243 ~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~----~~~~~~~~~~~~~~~~ 291 (292)
+.+++.++...|++ |...++++.+.+|+++... ......+++++|++.|
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888887 8888888888888886432 2356667777777655
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=4.6e-25 Score=209.68 Aligned_cols=203 Identities=12% Similarity=0.007 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHH
Q 022777 87 KESTISSLKEWLSDP-AIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLR 160 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 160 (292)
+++|+..|++++..+ ..|+...++..+|.++...|++++|+..|++ |..+.++..+|.++...|++++|+..++
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444445555555431 1366677788888888889999999998887 6777788888899999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 161 AMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 161 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
++++.+|++.......+.++.. .|++++|+..|++++...|++..++..+|.++.++|++++|+..|++++...|+++
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 9998888887666666655544 45699999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH-----------hHHhhHHHHHHHHhhc
Q 022777 241 ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK-----------RASSGDESFERALQSV 291 (292)
Q Consensus 241 ~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~-----------~~~~~~~~~~~~~~~~ 291 (292)
.++..+|.++...|++ |++.+++++++.|++..+. .+....++|++|+..|
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9998999998888887 8889999888888753211 1122346777776543
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=4.8e-25 Score=209.97 Aligned_cols=269 Identities=11% Similarity=0.032 Sum_probs=228.6
Q ss_pred hhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhH
Q 022777 14 RNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
..+...|++++|++.. +++.++|. +..++..+++++...|++++|+..+++. .|.+..++..++. +...|++++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~e 195 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPE 195 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHH
Confidence 3567789999999995 48888998 5789999999999999999999988765 4555556555544 556799999
Q ss_pred HHHHHHHHhcCCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHH----HHHHH
Q 022777 90 TISSLKEWLSDPAIG-SNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDY----AERQL 159 (292)
Q Consensus 90 A~~~~~~~l~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~----A~~~l 159 (292)
|+..+++++.. .| .+......++.++...|++++|+..+++ |+++.++..+|.++...|++++ |+..+
T Consensus 196 A~~~~~~~l~~--~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPF--FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhc--CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999887 54 4455556778899999999999999997 7889999999999999999996 89999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 160 RAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 160 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
+++++.+|++......++.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 274 ~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 274 RHALQFNSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999998777766666554 4679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHh
Q 022777 240 PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFERALQ 289 (292)
Q Consensus 240 ~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 289 (292)
+.++..++.++...|+. |.+.++++++.+|++. ...+.+....++++++
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-PQSFEEGLLALDGQIS 402 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-hhhHHHHHHHHHHHHH
Confidence 98887889999999998 9999999999999986 3334445555555544
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.6e-25 Score=208.65 Aligned_cols=273 Identities=12% Similarity=0.128 Sum_probs=226.8
Q ss_pred hhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--------------------------
Q 022777 14 RNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-------------------------- 66 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-------------------------- 66 (292)
.+++..|++++|++.++ +++++|+ ...+++.+|.+|..+|++++|+..+..+
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 246 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESK 246 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 35677899999999854 8888898 5789999999999999998886433110
Q ss_pred --------------------------------------------------------------------------------
Q 022777 67 -------------------------------------------------------------------------------- 66 (292)
Q Consensus 67 -------------------------------------------------------------------------------- 66 (292)
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 247 AKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHH
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHAL 141 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~ 141 (292)
.|....++..++.++..+|++++|+..+++++.. +|++...++.+|.++...|++++|+..|++ |++++++..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0112334566777777789999999999999998 899999999999999999999999999987 788999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
+|.++...|++++|+..|+++++++|++....+.++.++.. .|++++|+..|++++..+|+++.+++.+|.++...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK--EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 99999999999999999999999999998666665555443 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHH------HHHHH-HHhcCCc--HHHHHHHHHhhCCCChh----HHhHHhhHHHHHHHH
Q 022777 222 FDEAEGLLLDALNKDAKDPETLA------NLVVC-SLHQGKS--TSRYLNQLKLTHPDHML----VKRASSGDESFERAL 288 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~------~l~~~-~~~~g~~--a~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~ 288 (292)
+++|+..|++++.++|++...+. +.+.. +...|++ |..+++++++++|+++. ...+....+++++|+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999998654433 33333 3335777 99999999999999985 344567788888887
Q ss_pred hhc
Q 022777 289 QSV 291 (292)
Q Consensus 289 ~~~ 291 (292)
..|
T Consensus 563 ~~~ 565 (615)
T TIGR00990 563 KLF 565 (615)
T ss_pred HHH
Confidence 755
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=6.9e-24 Score=208.27 Aligned_cols=254 Identities=15% Similarity=0.133 Sum_probs=148.2
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.+...|++++|+...+ +....|. +...+..++.++...|++++|+..++++ .|.+..++..++.++...|++++|
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 3445677777776633 4444555 3556666777777777777777777655 444556666677666666777777
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..+++++.. .|++...+..++.++...|++++|+..++. |.++..+..++.++...|++++|+..+++++..
T Consensus 655 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 655 ITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777777666 666666666666666666666666666654 445555556666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
.|++. .....+.+ ....|++++|...+++++...|+++.+++.+|.++...|++++|+..|+++++..|+++.++.+
T Consensus 733 ~~~~~-~~~~l~~~--~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 733 APSSQ-NAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred CCCch-HHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55542 11111111 1223445555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCc-HHHHHHHHHhhCCCChhH
Q 022777 246 LVVCSLHQGKS-TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 246 l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~ 274 (292)
++.++...|+. |.++++++.+..|+++.+
T Consensus 810 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 810 LAWLYLELKDPRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhhCCCCcHH
Confidence 55555554444 555555555555555543
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.2e-23 Score=206.67 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=242.0
Q ss_pred hhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhH
Q 022777 14 RNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
..+...|++++|+... ++.+..|. +..++..++.++...|++++|+..++++ .|.+..++..++.++...|+.++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3566789999999994 47777887 4678899999999999999999999987 56678889999999999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
|+..++.+... .|.++..+..+|.++...|++++|+..|++ .++......++.++...|++++|...++++++.
T Consensus 688 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 688 AKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999988 899999999999999999999999999987 233367788899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
+|++.......+.++.. .|++++|...|+++++.+|+++.++..+|+++...|+ .+|+.++++++.+.|+++.++.+
T Consensus 766 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHH
Confidence 99998776666655544 4679999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 246 LVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
+|.++...|++ |.++++++++.+|.++.+.. .....+++++|..-|
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998 99999999999999987643 567778888887643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.9e-23 Score=209.43 Aligned_cols=271 Identities=13% Similarity=0.076 Sum_probs=177.4
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHH--H------------HHH
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQ--A------------VKL 76 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~--a------------~~~ 76 (292)
.++..|++++|+..++ +++.+|. +.++++.+|.+|.++|++++|+..++++ .|.+.. . ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4566799999998844 7778888 4788889999999999999999988876 332211 0 112
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHH----------
Q 022777 77 LALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHAL---------- 141 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~---------- 141 (292)
++..+...|++++|+..|++++.. +|+++.++..+|.++...|++++|+..|++ |++..++..
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 344555667777777777777776 777777777777777777777777777765 443333222
Q ss_pred --------------------------------HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHH
Q 022777 142 --------------------------------NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQ 189 (292)
Q Consensus 142 --------------------------------~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~ 189 (292)
++.++...|++++|+..|+++++.+|++....+.++.++.. .|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~--~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ--AGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHH
Confidence 23344456777777777777777777765544444433332 23455
Q ss_pred HHHHHHHHhHhhCCCCH---------------------------------------------------------------
Q 022777 190 EAYLIFQDFSEKYPMTG--------------------------------------------------------------- 206 (292)
Q Consensus 190 ~A~~~~~~~~~~~p~~~--------------------------------------------------------------- 206 (292)
+|+..+++++...|+++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555444443
Q ss_pred -----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 207 -----------LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 207 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.++..+|.++.+.|++++|+..|+++++.+|++++++.+++.++...|++ |.+.++++.+..|+++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 34445666667777777777777777777777777777777777777776 77777777777777765
Q ss_pred HHh----HHhhHHHHHHHHhh
Q 022777 274 VKR----ASSGDESFERALQS 290 (292)
Q Consensus 274 ~~~----~~~~~~~~~~~~~~ 290 (292)
+.. +....+++++|++-
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHH
Confidence 322 33445556665543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.7e-23 Score=209.67 Aligned_cols=272 Identities=13% Similarity=-0.003 Sum_probs=222.6
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHh----------
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALY---------- 80 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~---------- 80 (292)
.++..|++++|+..+ +++..+|. +..+++.+|.++..+|++++|+..++++ +|.+..++..++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 556789999999995 48888898 4788999999999999999999999987 45555555444433
Q ss_pred --------------------------------hcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 022777 81 --------------------------------LSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALK 128 (292)
Q Consensus 81 --------------------------------~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 128 (292)
+...|++++|+..|++++.. .|+++.+++.+|.+|...|++++|+.
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33468889999999999988 89999999999999999999999999
Q ss_pred Hhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH----------------------------------------
Q 022777 129 HTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ---------------------------------------- 163 (292)
Q Consensus 129 ~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~---------------------------------------- 163 (292)
.+++ |.+++.+..++..+...+++++|+..++++.
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9886 6777777777766667777777766665432
Q ss_pred hhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 164 QIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 164 ~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
+..|++....+.++.++. ..|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++...|+++.++
T Consensus 597 ~~~p~~~~~~~~La~~~~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQ--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred HhCCCCchHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 134555544444444433 457799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHhhCCCChh------H----HhHHhhHHHHHHHHhhc
Q 022777 244 ANLVVCSLHQGKS--TSRYLNQLKLTHPDHML------V----KRASSGDESFERALQSV 291 (292)
Q Consensus 244 ~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~------~----~~~~~~~~~~~~~~~~~ 291 (292)
..++.++...|++ |..++++++...|+++. + ..+....+++++|+.-|
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998 99999999998877652 2 34567788888888766
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-22 Score=182.46 Aligned_cols=261 Identities=16% Similarity=0.094 Sum_probs=221.2
Q ss_pred hhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCch-----HHHHHHHHHhhc
Q 022777 11 FNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATP-----LQAVKLLALYLS 82 (292)
Q Consensus 11 ~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~-----~~a~~~la~~~~ 82 (292)
+....+...|++++|+... ++.+.+|. ++.++..++.++...|++++|+..+++. .++. ..++..++.++.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3455667789999999994 47778898 5788999999999999999999999876 2221 245778899999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCch-----hHHHHHHHHHHhCCCh
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTM-----ELHALNVQIFLKMHRS 152 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~-----~~~~~~a~~~~~~~~~ 152 (292)
..|++++|+..+++++.. .|.+..++..++.++...|++++|+..+++ +.+. ..+..++.++...|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999987 788999999999999999999999999987 2221 2345678889999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT-GLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
++|+..++++++.+|++....+..+.++.. .|++++|+..|++++...|++ +.++..++.++...|++++|+..+++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999887666655554443 567999999999999988876 46788999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 232 ALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 232 al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++...|++... ..++.++...|++ |.++++++.+.+|+++.+..+
T Consensus 275 ~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 275 ALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred HHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 99999987654 7899999999998 999999999999999866543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1e-21 Score=192.18 Aligned_cols=254 Identities=11% Similarity=-0.009 Sum_probs=211.6
Q ss_pred CCCCCCc-hHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH
Q 022777 31 LTNLPPD-DAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA 107 (292)
Q Consensus 31 ~~~~~p~-~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~ 107 (292)
+....|. ....+++.+|.++.. +++.+|+..+.++ ..|+......++..+...|++++|+..+++++.. .|. .
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~-~ 542 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS-N 542 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC-c
Confidence 4444455 136788999999987 8999999978766 3334334666777777789999999999998775 454 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
..++.+|.++...|++++|+.+|++ |........++......|++++|+..++++++.+|+ .......+.++.
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~- 620 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR- 620 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-
Confidence 5678899999999999999999987 455555555566666779999999999999999997 544555554433
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRY 260 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~ 260 (292)
..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++ |...
T Consensus 621 -~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 621 -QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred -HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4577999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 261 LNQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 261 ~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
+++++++.|++..+.+ +.....+|+++.+.|
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999987664 577888899988876
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.2e-21 Score=191.62 Aligned_cols=260 Identities=9% Similarity=-0.018 Sum_probs=224.3
Q ss_pred CCCchhhhhhhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhc
Q 022777 6 APDHLFNLRNNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLS 82 (292)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~ 82 (292)
+++-++..+..+..|.+.+|+.. .+.....|++ . .++.++.++...|++++|+..++++ .++....+..++..+.
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~-~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA-W-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch-H-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 44556677777777999999996 4566667874 3 4667788888999999999999977 5555566778888888
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAER 157 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~ 157 (292)
..|+.++|+..+++++.. .|++...+..++......|++++|+..+++ | +++++..+|.++.+.|++++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 899999999999999998 899888888777777788999999999998 5 48899999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 022777 158 QLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 158 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 237 (292)
.+++++..+|++.......+++... .|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~--~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWD--SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999998776666655443 56799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 238 KDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
++..+....|.+.....++ +.+-+++....+|+..
T Consensus 709 ~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 709 NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999988877766 7888888888888876
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=170.30 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc--cHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS--NATLRLIAG 114 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~--~~~~~~~la 114 (292)
....+..|..+...|++++|+..++++ +|.+..++..++.++...|++++|+..+++++.....+. ....+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 355677899999999999999999987 566788899999999999999999999999987511111 235678999
Q ss_pred HHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH---HHHHHhccc
Q 022777 115 IIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA---WLNLAVGGS 186 (292)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a---~~~l~~~~~ 186 (292)
.+|...|++++|+..|++ +.+..++..++.++...|++++|+..++++++..|.+........ ...+....+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 999999999999999987 456778889999999999999999999999998876532211111 112233457
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP-ETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++..+|.+. .++..++.++...|+. |..++++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999874 5677889999999998 9999999
Q ss_pred HHhhCCCChhHHh---HHhhHHHHHHHHhhc
Q 022777 264 LKLTHPDHMLVKR---ASSGDESFERALQSV 291 (292)
Q Consensus 264 ~~~~~P~~~~~~~---~~~~~~~~~~~~~~~ 291 (292)
+.+.+|+++.... +....+++++|+..|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999998875432 355567777777644
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=8.8e-23 Score=175.94 Aligned_cols=250 Identities=20% Similarity=0.219 Sum_probs=110.8
Q ss_pred hhhhhhhhhhccHHHHHhhc-c-CCCC-CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcC
Q 022777 10 LFNLRNNFYLGAYQAAINNS-D-LTNL-PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSS 83 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~-~~~~-~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~ 83 (292)
+.-+..++..|++++|++.. + +... .|. +.+.+..++.....+++++.|+..+++. ++.....+..++.+ ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~-~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPD-DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 33456778889999999984 4 4444 355 5777778888889999999999999876 33345556667776 46
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-------CCchhHHHHHHHHHHhCCChHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-------GGTMELHALNVQIFLKMHRSDYAE 156 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~ 156 (292)
.+++++|+.++++..+. +.++..+.....++...|+++++...+++ +.++..+..+|.++.+.|++++|+
T Consensus 90 ~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 78899999988888775 34567777778889999999999888876 356778888999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
..++++++.+|++.......+|+.+ ..|+++++...+.......|+++.++..+|.++..+|++++|+..|+++++.+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li--~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLI--DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH--HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999999999998877666666544 45678988888888888888888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
|+|+.++.++|.++...|+. |..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999999999987 7777766653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.8e-20 Score=181.88 Aligned_cols=269 Identities=9% Similarity=0.014 Sum_probs=165.3
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.+...|++++|++.. +++..+|.+ ..++..++.++...|++++|+..++++ .|.+.. +..++.++...|+.++|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHH
Confidence 344566666666663 355556653 555666666666666666666666654 344444 55666666666666666
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHH----------------------------------------------
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYN---------------------------------------------- 124 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~---------------------------------------------- 124 (292)
+..++++++. .|+++.++..+|.++...|+++
T Consensus 136 l~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 136 LRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 6666666665 6666666555555555444444
Q ss_pred -----------------------------------------HHHHHhhc-----CCch-hHHHHHHHHHHhCCChHHHHH
Q 022777 125 -----------------------------------------EALKHTNA-----GGTM-ELHALNVQIFLKMHRSDYAER 157 (292)
Q Consensus 125 -----------------------------------------~A~~~~~~-----~~~~-~~~~~~a~~~~~~~~~~~A~~ 157 (292)
+|+..|++ +..| .+...++.+|..+|++++|+.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 33333333 0011 122334566666777777777
Q ss_pred HHHHHHhhCCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC-------------C--HHHHHHHHHHHHh
Q 022777 158 QLRAMQQIDEDHT----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM-------------T--GLILNGKAVCCMH 218 (292)
Q Consensus 158 ~l~~~~~~~p~~~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~-------------~--~~~~~~la~~~~~ 218 (292)
.|+++++.+|.+. .....+++ .....|++++|+..++++....|. + ..++..+|.++..
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~--a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFY--SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHH--HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 7777666655431 11111111 223446688888888887776652 1 3466777888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHh
Q 022777 219 MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQ 289 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~ 289 (292)
.|++++|+..+++++...|+++.++.++|.++...|++ |.+.++++++.+|+++.+.- .....++|++|++
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 88888888888888888888888888888888888877 78888888888888864322 3455556666654
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=3.3e-22 Score=172.33 Aligned_cols=241 Identities=21% Similarity=0.194 Sum_probs=110.2
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc---C--CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 022777 44 CLVYRSYIALGSYQLVISEIDES---A--ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFM 118 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a---~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~ 118 (292)
+.+|.++...|++++|+..+++. . +.+...+..++.+....++++.|+..|++++.. .+.++..+..++.+ .
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--DKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc-c
Confidence 46799999999999999999643 3 445777888898888889999999999999988 78888888899888 7
Q ss_pred hcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccccHHHHH
Q 022777 119 HEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID--EDHTLTQLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 119 ~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~~A~ 192 (292)
..+++++|+.++.+ ..++..+...+.++...++++++...++++.... |++.......+.++. ..|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~--~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE--QLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH--HCCHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH--HcCCHHHHH
Confidence 99999999998876 4566677777889999999999999999987654 555555555555544 456799999
Q ss_pred HHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 193 LIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 193 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
.+|+++++.+|+++.+...+++++...|+.+++...+.......|+++..+..+|.++...|++ |..+++++.+.+|+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999988899999999999999999998 99999999999999
Q ss_pred ChhHH----hHHhhHHHHHHHHh
Q 022777 271 HMLVK----RASSGDESFERALQ 289 (292)
Q Consensus 271 ~~~~~----~~~~~~~~~~~~~~ 289 (292)
||.+. ++....|++++|+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccc
Confidence 99754 46888899988865
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=8e-20 Score=177.41 Aligned_cols=261 Identities=11% Similarity=-0.038 Sum_probs=197.4
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---------------------------
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--------------------------- 66 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--------------------------- 66 (292)
.+...|++++|+... ++++..|+ +.++++.++.++...|..++|+..++++
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 445578888888774 37777777 3667777777776666665544333311
Q ss_pred -------------------------CCchH----HHHH-HHHHhhcCCCChhHHHHHHHHHhcCCCCCcc-HHHHHHHHH
Q 022777 67 -------------------------AATPL----QAVK-LLALYLSSPDNKESTISSLKEWLSDPAIGSN-ATLRLIAGI 115 (292)
Q Consensus 67 -------------------------~~~~~----~a~~-~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~-~~~~~~la~ 115 (292)
+|+.. .+.. .++.++ ..|++++|+..|++++.. .|.. ..+...+|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~--~~~~P~~a~~~la~ 280 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAE--GQIIPPWAQRWVAS 280 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhcc--CCCCCHHHHHHHHH
Confidence 01110 0011 123333 457889999999998886 4332 234455799
Q ss_pred HHHhcCCHHHHHHHhhc-----CCc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc-------------H--H
Q 022777 116 IFMHEEDYNEALKHTNA-----GGT----MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-------------T--L 171 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~-----~~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-------------~--~ 171 (292)
+++..|++++|+..|++ |.+ .+....++.++...|++++|+..++++....|.. . .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 99999999999999987 222 3456677778899999999999999999887632 1 1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
..+..+.++. ..|++++|+..+++++...|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.++.++.
T Consensus 361 a~~~~a~~l~--~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAK--YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 2233333333 45779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCc--HHHHHHHHHhhCCCChhHHhHHhhH
Q 022777 252 HQGKS--TSRYLNQLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 252 ~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~ 281 (292)
..|++ |...++++++..|+++.+..+....
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998 9999999999999999998876544
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=2.1e-19 Score=162.87 Aligned_cols=253 Identities=10% Similarity=-0.003 Sum_probs=193.5
Q ss_pred hhhhhhhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchH-HHHHHHHHhhcCC
Q 022777 10 LFNLRNNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPL-QAVKLLALYLSSP 84 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~-~a~~~la~~~~~~ 84 (292)
+......+..|+++.|.+. .+..+.+|++ ...++..|+++..+|+++.|..+++++ .|.+. ......+.++...
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 4445567888999999998 4466667763 556677889999999999999999886 33332 3444468888888
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--------------------------------
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-------------------------------- 132 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------------------- 132 (292)
|+++.|...++.+++. .|+++.++..++.++...|++++|++.+.+
T Consensus 167 ~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 167 NELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998 899999999999999999999988887763
Q ss_pred -----------C----CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 022777 133 -----------G----GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQD 197 (292)
Q Consensus 133 -----------~----~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~ 197 (292)
| +++..+..++..+...|++++|++.++++++..|++....+...........++.++++..+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 1 2445566667788888888888888888888888876322111111111223567888888888
Q ss_pred hHhhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 198 FSEKYPMTG--LILNGKAVCCMHMGNFDEAEGLLL--DALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 198 ~~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
.++.+|+++ .++..+|+++.+.|+|++|.++|+ .+++..|++.. ...+|.++...|+. |.+++++.+.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888 888888888888888888888888 57778887666 44888888888887 7888877654
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.5e-19 Score=153.93 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=178.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHh
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLK 148 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~ 148 (292)
+...+.++...|+.-.|-..+.+++.. .|.+...|+.+|.+|.+.++.++-...|++ |.+++.++.+|++++-
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKL--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhc--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 344455555566777777788888888 888888899999999999999999999987 7899999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 149 MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
.+++++|...|++++.++|.+....+-++.....+ ++++++...|+++++.+|..|++++..|.++..+++|++|++.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~--~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ--HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 99999999999999999999987766666544443 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC------CHHHHHHHHHHHHhcC-Cc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhh
Q 022777 229 LLDALNKDAK------DPETLANLVVCSLHQG-KS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQS 290 (292)
Q Consensus 229 ~~~al~~~p~------~~~~~~~l~~~~~~~g-~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~ 290 (292)
|..++.+.|. ++..+.+-+.+..+.. +. |..++.++.+++|....... +.-..++-|+|+.=
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999 7777777776655443 33 99999999999999986443 45556666666653
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=8e-19 Score=164.69 Aligned_cols=227 Identities=8% Similarity=0.018 Sum_probs=185.4
Q ss_pred HHHHHHHHHhh---CChhHHHHhhhhc---CCchHHHHHHHHHhhc---------CCCChhHHHHHHHHHhcCCCCCccH
Q 022777 43 DCLVYRSYIAL---GSYQLVISEIDES---AATPLQAVKLLALYLS---------SPDNKESTISSLKEWLSDPAIGSNA 107 (292)
Q Consensus 43 ~~~la~~~~~~---g~~~~Al~~~~~a---~~~~~~a~~~la~~~~---------~~~~~~~A~~~~~~~l~~~~~p~~~ 107 (292)
.++.++.++.. +.+++|+..++++ +|.+..++..++.++. ..+++++|+..++++++. +|+++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~ 338 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNP 338 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCH
Confidence 34455544433 3457899999987 6777878888876543 234579999999999999 99999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
.++..+|.++...|++++|+..|++ |+++.++..+|.++...|++++|+..++++++++|++.......+++...
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 9999999999999999999999998 88899999999999999999999999999999999986444443443333
Q ss_pred hccccHHHHHHHHHHhHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEK-YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKSTSRYL 261 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~a~~~~ 261 (292)
.|++++|+..+++++.. .|+++.++..+|.++...|++++|+..++++....|.+..++..++.++...|+.+...+
T Consensus 419 --~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l 496 (553)
T PRK12370 419 --HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTI 496 (553)
T ss_pred --ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHH
Confidence 45699999999999877 488999999999999999999999999999999999999999899988888886644444
Q ss_pred HHHHh---hCCCChh
Q 022777 262 NQLKL---THPDHML 273 (292)
Q Consensus 262 ~~~~~---~~P~~~~ 273 (292)
+++.+ ..|.++.
T Consensus 497 ~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 497 REFLESEQRIDNNPG 511 (553)
T ss_pred HHHHHHhhHhhcCch
Confidence 44443 4555543
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.3e-19 Score=163.54 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=142.2
Q ss_pred cHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---------------------------------
Q 022777 21 AYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--------------------------------- 66 (292)
Q Consensus 21 ~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--------------------------------- 66 (292)
+..+|+..+ .+-.+-++.. -.+..+|++|..+++|++|...|+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 445566552 2333334322 34455667777777777766555432
Q ss_pred ----CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchh
Q 022777 67 ----AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTME 137 (292)
Q Consensus 67 ----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~ 137 (292)
++..+++|..+|.+|..+++.+.|+..+++++.. +|+...+|.++|--+.....+|.|..+|+. |.+-.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 3334555666666666566666666666666655 666666666666666666666666666665 44555
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHH
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM 217 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 217 (292)
+++-+|.+|.++++++.|+-+|+++++++|.+....-..+-++ ...|+.++|+.+|++++..+|.|+-..+.+|.++.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~--~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ--HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH--HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 6666666666666666666666666666666532211111111 12344666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 218 HMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.++++++|...+++.-++-|++..+++-+|.++...|+. |...+--+..++|.-..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 666666666666666666666666666666666666554 55555555555555444
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.5e-19 Score=163.14 Aligned_cols=205 Identities=16% Similarity=0.111 Sum_probs=182.7
Q ss_pred CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHH
Q 022777 34 LPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLR 110 (292)
Q Consensus 34 ~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~ 110 (292)
.+|. +++.+..+|.+|.-+++.+.|++.|+++ +|...-++.+++-=+...+++++|...|+.++.. +|.+..+|
T Consensus 416 ~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAw 492 (638)
T KOG1126|consen 416 TDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAW 492 (638)
T ss_pred hCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHH
Confidence 3444 5677777889999999999999999998 5667777778876666778899999999999998 99999999
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 185 (292)
+.+|.+|.++++++.|+-.|++ |.+.....-.|.++.+.|+.|+|+..+++++-++|.+++..+-.+.++. +.
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~--~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF--SL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH--hh
Confidence 9999999999999999999998 6666677778999999999999999999999999999988888775544 45
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
+++++|+..++++.+.-|++..++..+|.++.++|+.+.|+..|.=|+.++|.-.++.
T Consensus 571 ~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence 6799999999999999999999999999999999999999999999999999876633
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=3.4e-18 Score=154.28 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=192.1
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCch-HHHH-HHHHHhhcCCCC
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATP-LQAV-KLLALYLSSPDN 86 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~-~~a~-~~la~~~~~~~~ 86 (292)
.....+..|++++|.+... ..+..+. ..-.+...+++...+|+++.|..+++++ .+|+ ..+. ...+.++...|+
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence 3345566799999998732 2222222 1233343466669999999999999987 3444 2333 244778888899
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------------------------------
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---------------------------------- 132 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------------- 132 (292)
+++|+..++++.+. .|+++.++..++.+|...|++++|+..+.+
T Consensus 169 ~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 169 NHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999998 999999999999999999999999955543
Q ss_pred -------------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 022777 133 -------------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFS 199 (292)
Q Consensus 133 -------------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~ 199 (292)
++++++...++..+...|+.++|.+.+++.++..|+.. +...+..+. .++.++++...++.+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~---l~~l~~~l~--~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER---LVLLIPRLK--TNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---HHHHHhhcc--CCChHHHHHHHHHHH
Confidence 12445566668889999999999999999999766553 222222332 367999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 200 EKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 200 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
+.+|+|+..+..+|.+++..|+|++|.+.|+++++..|++.. +..++.++...|+. |..++++.+..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999765 44789999999988 88888888764
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=5.7e-18 Score=140.34 Aligned_cols=195 Identities=13% Similarity=0.040 Sum_probs=144.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
...+..++..+...|++++|+..+++++.. .|++...+..+|.++...|++++|++.+++ |.++.++..++.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 455666677777677777777777777776 677777777777777777777777777765 5566677777777
Q ss_pred HHhCCChHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 146 FLKMHRSDYAERQLRAMQQID--EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
+...|++++|+..+++++... |.........+.++. ..|++++|...|.+++...|+++.++..+|.++...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL--KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 778888888888888877653 222222233333333 3466888988888888888888888888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCC
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHP 269 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P 269 (292)
+|...+++++...|.++..+..++.++...|+. +..+.+.+....|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999998888888888888888888888876 7777777665544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=162.63 Aligned_cols=276 Identities=12% Similarity=0.069 Sum_probs=229.0
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCC-
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDN- 86 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~- 86 (292)
.+.+.|..|+|..|+.+++ ++.++|.-.++..+.+|-|...+|+.+.|+..+.++ +|.+..++..|+.+.....+
T Consensus 170 kA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~ 249 (1018)
T KOG2002|consen 170 KARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS 249 (1018)
T ss_pred HHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch
Confidence 4567788999999999955 777888766677788899999999999999999887 77778888888887664433
Q ss_pred --hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHH
Q 022777 87 --KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAE 156 (292)
Q Consensus 87 --~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~ 156 (292)
+..++..+.++... +|.||.+...|+.-++..|+|+.+..+... +--.+..+.+|..|..+|++++|-
T Consensus 250 ~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 67888899888887 999999999999999999999999988876 123456889999999999999999
Q ss_pred HHHHHHHhhCCCc-HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 022777 157 RQLRAMQQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG----NFDEAEGLLLD 231 (292)
Q Consensus 157 ~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 231 (292)
..|.++++.+|++ .+..++.+.+++.. |.+..|..+|.+++...|++.+....+|.+|...+ ..+.|..++.+
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKR--GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHh--chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999 45566666667665 45999999999999999999999999999999997 77899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHhh-----CCCChh----HHhHHhhHHHHHHHHhhc
Q 022777 232 ALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQLKLT-----HPDHML----VKRASSGDESFERALQSV 291 (292)
Q Consensus 232 al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~-----~P~~~~----~~~~~~~~~~~~~~~~~~ 291 (292)
+++..|.|.++|..++.++.....+ +..++.++..+ .|=.|. +..+....++|.+|..+|
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999877666 77777777642 221122 444566777777766554
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=7.6e-18 Score=146.09 Aligned_cols=224 Identities=15% Similarity=0.094 Sum_probs=137.8
Q ss_pred ccHHHHHhh-ccCC---CCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHH
Q 022777 20 GAYQAAINN-SDLT---NLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTIS 92 (292)
Q Consensus 20 g~~~~Ai~~-~~~~---~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~ 92 (292)
+..+.+|.. .+++ .++|+.....++.+|.+|...|++++|+..++++ +|.+..++..++.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444555555 3333 2455545666777777777777777777777766 55567777777777777777777777
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-C
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-D 166 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~ 166 (292)
.|.++++. +|++..++..+|.++...|++++|+..+++ |+++. ......+....+++++|+..+++.... +
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 77777777 777777777777777777777777777776 44442 222223445567777777777665544 3
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHH----hHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQEAYLIFQD----FSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDA-KDPE 241 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~----~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 241 (292)
|+... .. .+.+..+.....+++..+.+ ..+..|..+.+|+.+|.++.+.|++++|+..|+++++.+| +.++
T Consensus 197 ~~~~~--~~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KEQWG--WN--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred ccccH--HH--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 33211 11 12222222112233333322 2244455667777777777777777777777777777775 5555
Q ss_pred HHHHHHHHH
Q 022777 242 TLANLVVCS 250 (292)
Q Consensus 242 ~~~~l~~~~ 250 (292)
..+.+..+.
T Consensus 273 ~~~~~~e~~ 281 (296)
T PRK11189 273 HRYALLELA 281 (296)
T ss_pred HHHHHHHHH
Confidence 555554433
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=4.6e-18 Score=159.61 Aligned_cols=239 Identities=14% Similarity=0.086 Sum_probs=192.6
Q ss_pred hccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhh---------CChhHHHHhhhhc---CCchHHHHHHHHHhhcCCC
Q 022777 19 LGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIAL---------GSYQLVISEIDES---AATPLQAVKLLALYLSSPD 85 (292)
Q Consensus 19 ~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~---------g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~ 85 (292)
.+.+++|++.+ +.++.+|+ ...++..+|.+|..+ +++++|+..++++ +|.+..++..++.++...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 35577899884 48889999 478888899887654 3478899999987 6778899999999988899
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHH
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLR 160 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 160 (292)
++++|+..|++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.....++.++...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999998 6776676667777888999999999999
Q ss_pred HHHhhC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hC
Q 022777 161 AMQQID-EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN---KD 236 (292)
Q Consensus 161 ~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~ 236 (292)
+++... |+++......+.++.. .|++++|...+.++....|++..+...++.++...|+ +|...+++.++ ..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSL--KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 999874 6666544444544443 5679999999999999999999999999999999995 67776666555 34
Q ss_pred CCCHHHHHHHHHHHHhcCCc-HHHHHHHHHhh
Q 022777 237 AKDPETLANLVVCSLHQGKS-TSRYLNQLKLT 267 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~ 267 (292)
|.++.. ...++...|+. ....++++.+.
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHHHHhhcc
Confidence 555543 66667777776 44445666543
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.1e-18 Score=149.43 Aligned_cols=262 Identities=13% Similarity=0.066 Sum_probs=215.9
Q ss_pred hhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
+..+|..++|.++.+..+ +.+.+|-+ .+.+...--++..+|+...-.-.-.+. .|..+.+|+.+|.+|...|++.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh-~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFH-LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCC-cchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 446788999999999954 88888874 444444333888888876544322232 4666889999999998889999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
+|...+.++... +|...++|+..|..+..+|..++|+..|.. ++.-....-+|.-|.++++++-|.+.+..+.
T Consensus 330 eARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999988 999999999999999999999999999987 4554556667788899999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 164 QIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK----YPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 164 ~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
.+.|.++......+-+.. ..+.|.+|...|+.++.. .++. ...++++|.++.+.+++.+|+..|+++|.+.
T Consensus 408 ai~P~Dplv~~Elgvvay--~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 AIAPSDPLVLHELGVVAY--TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hcCCCcchhhhhhhheee--hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 999999866555444322 234599999999997732 2222 2468999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
|.+++++..+|.++..+|+. |++++.+++-+.|++..+.++..
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999999998 99999999999999987776643
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=2.7e-17 Score=136.30 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=173.1
Q ss_pred CchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHH
Q 022777 36 PDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLI 112 (292)
Q Consensus 36 p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~ 112 (292)
+......++.++.++...|++++|+..++++ .|.+..++..++.++...|++++|+..+++++.. .|++...+..
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 104 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNN 104 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 3335678899999999999999999999977 5666788889999999999999999999999998 8999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhc-------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q 022777 113 AGIIFMHEEDYNEALKHTNA-------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 113 la~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 185 (292)
+|.++...|++++|+..+++ +.....+..++.++...|++++|...++++++.+|++.......+.++. ..
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~~ 182 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY--LR 182 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH--Hc
Confidence 99999999999999999987 2345577788999999999999999999999999988755555554444 35
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 237 (292)
|++++|...+++++...|+++..+..++.++...|+.++|....+.+....|
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 6799999999999998999999999999999999999999999888776654
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=1.5e-17 Score=139.89 Aligned_cols=271 Identities=15% Similarity=0.160 Sum_probs=211.4
Q ss_pred ccCCCchhhhh----hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch---HH
Q 022777 4 AAAPDHLFNLR----NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATP---LQ 72 (292)
Q Consensus 4 ~~~~~~~~~~~----~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~---~~ 72 (292)
-|||+.+-.+. -|+..|+-.-|+.-+ .++++.|+ ...+++-.|.+++.+|++++|...|+.. +|++ .+
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD-F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD-FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 46666644332 445567777777663 37777777 5677777788888888888888888765 2321 22
Q ss_pred HHHHH------------HHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc
Q 022777 73 AVKLL------------ALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT 135 (292)
Q Consensus 73 a~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~ 135 (292)
+...| ...+...||...++..+..+++. .|.+...+...+.+|...|++..|+.-++. .++
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 22111 12233568888889999999988 899999999999999999999999999886 589
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHH--------HHHHHHHH--HhccccHHHHHHHHHHhHhhCCCC
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQ--------LANAWLNL--AVGGSKIQEAYLIFQDFSEKYPMT 205 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~--------l~~a~~~l--~~~~~~~~~A~~~~~~~~~~~p~~ 205 (292)
++.++.++++++..|+.+.++..++++++++|++..+. +......+ ..+.++|.++++..+++++..|.-
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~ 302 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE 302 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999994322 11111111 123467999999999999999985
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 206 GL----ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 206 ~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+. ..-.+..|+...+++.+|++...++|..+|+|.++++..+..|.....+ |+.-++++.+.+|+|..++.=
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 43 3344677899999999999999999999999999999999999887777 999999999999999876553
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.4e-17 Score=145.59 Aligned_cols=273 Identities=15% Similarity=0.124 Sum_probs=205.8
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.+|..|+|++||...+ .++..|+. +-.+.-++.||...|+++++++...++ +|....++++-+..+...|++.++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHH
Confidence 4466799999999854 88888873 455666888999999999999888776 666788888888888888998887
Q ss_pred HHHHHHH------------------h------------c-CCCCCccHHHHH----------------------------
Q 022777 91 ISSLKEW------------------L------------S-DPAIGSNATLRL---------------------------- 111 (292)
Q Consensus 91 ~~~~~~~------------------l------------~-~~~~p~~~~~~~---------------------------- 111 (292)
+-...-+ + + .. .|.-|...+
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr-~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENR-PPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccC-CCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 6322111 1 1 00 111111100
Q ss_pred -HHHHHHHh-cCCHHHHHHHhhc---------CCc---------hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH
Q 022777 112 -IAGIIFMH-EEDYNEALKHTNA---------GGT---------MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL 171 (292)
Q Consensus 112 -~la~~~~~-~g~~~~A~~~~~~---------~~~---------~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 171 (292)
.+-.++.. ...|.+|...+.+ ..+ .+++.+.|..++..|+.-.|...++.++.++|...-
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ 361 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS 361 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch
Confidence 01111111 1134455544443 112 345667788899999999999999999999988765
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
+.+-.+.+++ ..++..+-+..|+++.+.+|++|++|...|.+++-++++++|+..|++++.++|.+.-+++.++.+..
T Consensus 362 lyI~~a~~y~--d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYA--DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHh--hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 5555454444 34568899999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCc--HHHHHHHHHhhCCCChhHHhH----HhhHHHHHHHHhhc
Q 022777 252 HQGKS--TSRYLNQLKLTHPDHMLVKRA----SSGDESFERALQSV 291 (292)
Q Consensus 252 ~~g~~--a~~~~~~~~~~~P~~~~~~~~----~~~~~~~~~~~~~~ 291 (292)
++++. +.+.|+.+.+..|+-|.+..+ +.-.++||+|++-|
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 88887 889999999999999987664 77789999999877
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=3.2e-17 Score=142.16 Aligned_cols=193 Identities=15% Similarity=0.056 Sum_probs=160.1
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
...+..+|.++...|+.++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |++..++..+|.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567889999999999999999999999999 999999999999999999999999999998 7888999999999
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 225 (292)
+...|++++|+..++++++.+|++... ..|.++....+++++|+..|.+.....+.+ .+ ..+.+....|++.++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~-~~~~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYR---ALWLYLAESKLDPKQAKENLKQRYEKLDKE--QW-GWNIVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHccCCHHHHHHHHHHHHhhCCcc--cc-HHHHHHHHccCCCHH
Confidence 999999999999999999999998632 223344444567999999998876543322 22 246777777877654
Q ss_pred HHHHHHHH-------hhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 226 EGLLLDAL-------NKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 226 ~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
..++.+. ++.|..+++++++|.++...|++ |..+++++.+++|.+-
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2444433 66778889999999999999998 9999999999997543
No 36
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=144.91 Aligned_cols=223 Identities=20% Similarity=0.169 Sum_probs=164.7
Q ss_pred HHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCH
Q 022777 46 VYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDY 123 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~ 123 (292)
+|+||.++|-+.+|.+.++.+ .-|.+.++..|+.+|.+.++.+.|+.++.+.+.. -|.++..+...|+++..++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhH
Confidence 678888888888888888776 4556677777888888777788888888887777 788888888888888888888
Q ss_pred HHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 124 NEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 124 ~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
++|+++|+. +.+.|+..-.+.-|+-.|+++-|+..|+++++..-.++.+....+.+-++- +++|-++..|+++
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya--qQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA--QQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh--cchhhhHHHHHHH
Confidence 888888876 566777666677777788888888888888877554443332223333332 3488888888887
Q ss_pred HhhC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 199 SEKY--P-MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 199 ~~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
+..- | ...++|+++|.+....|++.-|.+-|+-+|..+|++.+++.||+++-...|+. |..+++.+....|+-.
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 6542 2 34578888888888888888888888888888888888888888877777776 7788877777777643
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=137.84 Aligned_cols=234 Identities=18% Similarity=0.101 Sum_probs=200.3
Q ss_pred hhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
.++++..|.+.+|-...+ -++..| .++....++++|.+..++..|+..+... -|-+...+...+.++..+++.+
T Consensus 230 gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 357788999999998844 555555 4678888999999999999999998876 4556777788999999889999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
+|+++|+.+++. +|.|+++.-.+|.-|+-.|+++-|+.+|++ ..+++.+..+|.|++..+++|-++..+.+++
T Consensus 308 ~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 308 DALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 999999999998 899999999999999999999999999998 5889999999999999999999999999998
Q ss_pred hh--CCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 164 QI--DEDHTLTQLANAWLNLA---VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 164 ~~--~p~~~~~~l~~a~~~l~---~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
.. +|+.. +..|+++. .+.|++.-|-.+|+-++..+|++.++++++|++..+.|+.++|..++..+....|+
T Consensus 386 stat~~~~a----aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 386 STATQPGQA----ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hhccCcchh----hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 76 35432 45677664 35688999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 022777 239 DPETLANLVVCSLHQG 254 (292)
Q Consensus 239 ~~~~~~~l~~~~~~~g 254 (292)
-.+..+|++.+..+.|
T Consensus 462 m~E~~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 462 MAEVTTNLQFMSVHYG 477 (478)
T ss_pred ccccccceeEEeeecC
Confidence 9999999887655444
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=146.85 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=177.1
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhc
Q 022777 44 CLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~ 120 (292)
+..|..+++.|+..+|.-.|+.+ +|.+.++|..|+.....-++-..||..++++++. +|+|.+++..||..|..+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhh
Confidence 66799999999999999999987 7888999999999988666777899999999999 999999999999999999
Q ss_pred CCHHHHHHHhhc--CCch-hHHHHHHH---------HHHhCCChHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccc
Q 022777 121 EDYNEALKHTNA--GGTM-ELHALNVQ---------IFLKMHRSDYAERQLRAMQQIDE--DHTLTQLANAWLNLAVGGS 186 (292)
Q Consensus 121 g~~~~A~~~~~~--~~~~-~~~~~~a~---------~~~~~~~~~~A~~~l~~~~~~~p--~~~~~~l~~a~~~l~~~~~ 186 (292)
|.-.+|+++|++ ..++ ..+...+. -......+..-...|-++....| .++..+.+++-++-. .+
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l--s~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL--SG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc--ch
Confidence 999999999987 1111 11110000 00011112233445555555556 445555555433222 35
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQL 264 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~ 264 (292)
.|++|++||+.++...|+|..+|+.||..+....+..+|+..|++|+++.|+...++||||+++...|-+ |.+++=.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999998 88888788
Q ss_pred HhhCCC
Q 022777 265 KLTHPD 270 (292)
Q Consensus 265 ~~~~P~ 270 (292)
+..+++
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 777665
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=5.6e-16 Score=124.15 Aligned_cols=200 Identities=17% Similarity=0.123 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
...+++-+|..|+..|++..|...++++ +|....++..+|.+|...|+.+.|-+.|++++.. .|++.+++.+.|.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~ 111 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhH
Confidence 4566777777888888888888888776 6667778888888888778888888888888877 7888888888888
Q ss_pred HHHhcCCHHHHHHHhhc----C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccH
Q 022777 116 IFMHEEDYNEALKHTNA----G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKI 188 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~----~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~ 188 (292)
-++.+|+|++|..+|++ | .....+..+|.|.+++|+++.|...|+++++.+|+.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------------------- 172 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------------------- 172 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-------------------
Confidence 88888888888887776 2 333445555555555665555555555555555554
Q ss_pred HHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 189 QEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 189 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+.....++...++.|++-.|..++++.....+-..+.+.-.+.+-...|+. +.++-.++.+
T Consensus 173 -----------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 173 -----------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred -----------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444445555555555555555555444444444443334444445554 4455555555
Q ss_pred hCCCChhHHh
Q 022777 267 THPDHMLVKR 276 (292)
Q Consensus 267 ~~P~~~~~~~ 276 (292)
..|..+....
T Consensus 236 ~fP~s~e~q~ 245 (250)
T COG3063 236 LFPYSEEYQT 245 (250)
T ss_pred hCCCcHHHHh
Confidence 5555555443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.3e-15 Score=137.43 Aligned_cols=243 Identities=14% Similarity=0.035 Sum_probs=181.9
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc--CCchHH-HHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH-HHHHHHHHHHh
Q 022777 44 CLVYRSYIALGSYQLVISEIDES--AATPLQ-AVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT-LRLIAGIIFMH 119 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a--~~~~~~-a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~-~~~~la~~~~~ 119 (292)
+..|......|+++.|.+.+.+. ..+.+. .+...+......|+++.|...+.++.+. .|++.. .....+.++..
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 44555666679999999888766 222223 3344455546789999999999999987 788753 33456999999
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH--HHH------------------
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL--TQL------------------ 174 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~--~~l------------------ 174 (292)
+|++++|+..+++ |+++.+...++.+|...|++++|+.++.++.+..+.+.. ..+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999987 899999999999999999999999888888876443210 000
Q ss_pred --------------------HHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 175 --------------------ANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 175 --------------------~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
..++.......|+.++|...+++.++. |.++.+...++.+ ..++.+++++.+++.++
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence 001111122346788899999888884 4456555444444 44889999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh---HHhHHhhHHHHHHHHhhc
Q 022777 235 KDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML---VKRASSGDESFERALQSV 291 (292)
Q Consensus 235 ~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~---~~~~~~~~~~~~~~~~~~ 291 (292)
.+|+|++.+..+|.++...|++ |+++++++.+..|+++. ...+....++-++|+..|
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998988 99999999999999875 344567777777777665
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.2e-15 Score=138.24 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH-HHHHHHHHHHHh
Q 022777 44 CLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA-TLRLIAGIIFMH 119 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~-~~~~~la~~~~~ 119 (292)
...|......|+++.|.+.+.++ .|.+..++...|......|+.+.|...+.++.+. .|++. .+....+.++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHH
Confidence 44566677889999999999877 3434556677788888889999999999999887 78864 566667999999
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
.|++++|+..++. |+++.+...++.++...|++++|.+.+++..+..
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999987 8999999999999999999999999999999763
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.9e-15 Score=145.68 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=188.2
Q ss_pred hhhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CCch--HHHHHHHHHhhcCCC
Q 022777 10 LFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-AATP--LQAVKLLALYLSSPD 85 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~--~~a~~~la~~~~~~~ 85 (292)
+..+.+.+.+|+|..|++.+ ++++.+|.+....+ .++.++...|++++|+.+++++ .|.+ ...+..+|.++...|
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 44677889999999999994 58888998533333 7788888899999999999998 3323 444555677888889
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchhH--HHHHHHHHHhCCChHHHHHHHHH
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--GGTMEL--HALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~--~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
++++|++.|+++++. +|+++.++..++.++...|++++|+..+.+ +.++.. ...++.++..+++..+|+..+++
T Consensus 117 dyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999884 111111 12222333333444334444444
Q ss_pred HHhhCCCc------------------------------------------------------------------------
Q 022777 162 MQQIDEDH------------------------------------------------------------------------ 169 (292)
Q Consensus 162 ~~~~~p~~------------------------------------------------------------------------ 169 (292)
+++.+|++
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 44444444
Q ss_pred --------------------------------------------------------------------------------
Q 022777 170 -------------------------------------------------------------------------------- 169 (292)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (292)
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence
Q ss_pred ------------HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC---------------CCHHHHHHHHHHHHhcCCH
Q 022777 170 ------------TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP---------------MTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 170 ------------~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~la~~~~~~g~~ 222 (292)
...... .++-+.+.+++++|..+++++....| +-.++...++.++.-.|++
T Consensus 355 ~~~~~~~~~~~~~~~~~~--L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADD--LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred hccccccCCCcchHHHHH--HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 110111 11222233556666666666665444 1124556677777888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHH
Q 022777 223 DEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERAL 288 (292)
Q Consensus 223 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~ 288 (292)
.+|++.+++.+...|.|+.++..+|.++...|.+ |...++.+..++|++..+.. .....++|+.|.
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 8888888888888888888888888888887877 77777777778888766444 355556666653
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=3.3e-15 Score=144.15 Aligned_cols=260 Identities=10% Similarity=-0.039 Sum_probs=199.4
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTI 91 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~ 91 (292)
.+..+|+|++|++.. ++++.+|++ +++++.++..+...++.++|+..++++ ..|.......++.++...++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 555679999999995 489999995 788888999999999999999999987 3333334466666666666776799
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---------------------------------------
Q 022777 92 SSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--------------------------------------- 132 (292)
Q Consensus 92 ~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------------------- 132 (292)
..++++++. .|++.+++..+..++.+.|-...|++...+
T Consensus 190 ~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999988 888888888777777777766555554430
Q ss_pred --------------CCch--------------------------------------------------------------
Q 022777 133 --------------GGTM-------------------------------------------------------------- 136 (292)
Q Consensus 133 --------------~~~~-------------------------------------------------------------- 136 (292)
+..|
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 0000
Q ss_pred --------------------hHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-------------Cc--HHHHHHHHHHHH
Q 022777 137 --------------------ELHALNVQIFLKMHRSDYAERQLRAMQQIDE-------------DH--TLTQLANAWLNL 181 (292)
Q Consensus 137 --------------------~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p-------------~~--~~~~l~~a~~~l 181 (292)
+....+...|+..+++++|..+++++.+..| ++ .......+.+++
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 0012233445556666666666666655333 11 222233344444
Q ss_pred HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSR 259 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~ 259 (292)
. .|++.+|...+++++...|.|+.++..+|.++...|++.+|+..++.++.++|++..+.+.++.++..+|++ |..
T Consensus 428 ~--~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 A--LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred H--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 4 356999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHhhCCCChhHHhHHh
Q 022777 260 YLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 260 ~~~~~~~~~P~~~~~~~~~~ 279 (292)
...++....|+|+.++++.-
T Consensus 506 ~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 506 LTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHHHHHhhCCCchhHHHHHH
Confidence 99999999999999988753
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.1e-15 Score=142.36 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=180.6
Q ss_pred hhhhhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+...|-.|+++.|++. .++++.+|. ...+++++|.+|..+|+.+.++.+.-.+ +|.+..-|..++.....+|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 44466778999999999 458888998 5899999999999999999998765443 777889999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----C-Cch----hH-------------------
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----G-GTM----EL------------------- 138 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~-~~~----~~------------------- 138 (292)
+.|+-+|.+++.. +|.+-......+.+|.+.|+...|+..+.+ | .+. +.
T Consensus 224 ~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999 999999999999999999999999999886 2 110 11
Q ss_pred -----------------HHHHHHHHHhCCChHHHHHHHHHHHhh--CCCc---------------------------HHH
Q 022777 139 -----------------HALNVQIFLKMHRSDYAERQLRAMQQI--DEDH---------------------------TLT 172 (292)
Q Consensus 139 -----------------~~~~a~~~~~~~~~~~A~~~l~~~~~~--~p~~---------------------------~~~ 172 (292)
+..++.++++..+++.|...+.....+ .||+ ...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 222344455555555555544444430 0000 000
Q ss_pred HHHHHHHHH---------------------------------HhccccHHHHHHHHHHhHhhCCC-CHHHHHHHHHHHHh
Q 022777 173 QLANAWLNL---------------------------------AVGGSKIQEAYLIFQDFSEKYPM-TGLILNGKAVCCMH 218 (292)
Q Consensus 173 ~l~~a~~~l---------------------------------~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~ 218 (292)
++..+.+.+ +...|++.+|+..|..+....+. +..+|..+|.|++.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111111111 11236677788888777776554 45677778888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHH
Q 022777 219 MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQL 264 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~ 264 (292)
+|.+++|+..|++++...|++.++.+.|+.++..+|++ |.+.+.++
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 88888888888888888888888888888888888876 55555444
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=4.6e-15 Score=118.94 Aligned_cols=165 Identities=20% Similarity=0.272 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 180 (292)
-..+++.||.-|+.+|++..|...+++ |++..++..++.+|.+.|+.+.|.+.|++++.++|++.....-.+|+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 356778899999999999999999998 788889999999999999999999999999999999875555555664
Q ss_pred HHhccccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--
Q 022777 181 LAVGGSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 181 l~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-- 256 (292)
. +.|++++|...|++++.. .|..+..+-++|+|.++.|+++.|+.+|+++|+++|+++.....++......|++
T Consensus 114 C--~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 C--AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred H--hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 4 456899999999999874 6777889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCCCh
Q 022777 257 TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~ 272 (292)
|.-++++.....+-..
T Consensus 192 Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 192 ARLYLERYQQRGGAQA 207 (250)
T ss_pred HHHHHHHHHhcccccH
Confidence 8888888877666444
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.1e-15 Score=139.39 Aligned_cols=262 Identities=14% Similarity=0.065 Sum_probs=179.3
Q ss_pred chhhhhh-hhhhccHHHHHhhc-cCCC---CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch-HHHHHHHHH
Q 022777 9 HLFNLRN-NFYLGAYQAAINNS-DLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATP-LQAVKLLAL 79 (292)
Q Consensus 9 ~~~~~~~-~~~~g~~~~Ai~~~-~~~~---~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~-~~a~~~la~ 79 (292)
-+.-+.. +|.+|+|..|..+. .... ..+. ..+..|.+|++|-.+|+++.|..+|-++ ++.+ ..++..|+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI-KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 3444444 45688999888883 3222 2233 4566788899999999999998888765 4554 667888888
Q ss_pred hhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC----CHHHHHHHhhc-----CCchhHHHHHHHHHHhCC
Q 022777 80 YLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE----DYNEALKHTNA-----GGTMELHALNVQIFLKMH 150 (292)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~ 150 (292)
++...|+++.|+..++++++. .|++.+...+||.+|...+ ..+.|..++.+ |.+.++++.+++++...+
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 888888899999999998888 8888888888888888775 56677777765 567778888888775554
Q ss_pred ChHHHHHHHHHHHhh-----C--CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh-----CCCC-----HHHHHHHH
Q 022777 151 RSDYAERQLRAMQQI-----D--EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK-----YPMT-----GLILNGKA 213 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~-----~--p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-----~p~~-----~~~~~~la 213 (292)
-+ .++..|..++.. . |-..+..++ -.++ ..|.+.+|...|.++... +++. ....+++|
T Consensus 429 ~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNva--slhf--~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 429 PW-ASLDAYGNALDILESKGKQIPPEVLNNVA--SLHF--RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred hH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHH--HHHH--HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43 347777777643 1 111222222 1222 234577777777776544 2221 23467788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
.|+-.++++..|.+.|..++...|+..+....++......+.. +..+++.++..+..||.+..+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 8888888888888888888888888888777777333333333 7788888888888887766653
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.1e-15 Score=129.47 Aligned_cols=264 Identities=11% Similarity=0.006 Sum_probs=191.3
Q ss_pred chhhhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHh--hCChhHHHHhhhhc---CCchHHHHHHHHHhhc
Q 022777 9 HLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIA--LGSYQLVISEIDES---AATPLQAVKLLALYLS 82 (292)
Q Consensus 9 ~~~~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~--~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~ 82 (292)
++..++.++..|+++.||+..+ +.+.+......+.--+...+.. -.++.+|-.+...+ +.-+..++..-+.+-.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 3556778889999999999966 4443322111222222222323 23455666555555 2223445444455545
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAER 157 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~ 157 (292)
..|++++|...|++++.. +..-.++++.+|..+..+|+.++|+.+|-+ -++.+.++.++.+|..+.++.+|++
T Consensus 502 ~ngd~dka~~~ykeal~n--dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN--DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcC--chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 568888998888888887 677788888888888889999999988877 4778888888888988899999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 022777 158 QLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 158 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 237 (292)
++.++..+-|.++...--+ .-++...|+-.+|+.++=.--.-+|-+.+..-++|..|....=+++|+.+|+++--+.|
T Consensus 580 ~~~q~~slip~dp~ilskl--~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKL--ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcccCCCCHHHHHHH--HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9888888877775322221 23444567788888888777778888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 238 KDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
+-..+....+.|+...|++ |.+.++.+.+..|.+..-+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 8887777788888888887 88888888888888865433
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=5.6e-15 Score=124.58 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=161.2
Q ss_pred CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHH
Q 022777 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALN 142 (292)
Q Consensus 68 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~ 142 (292)
|.+..-++.++.-+...|.+..|+..|-.+++. +|++..+++..|.+|+.+|+..-|+.-+.+ |+...++..+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 344556666666666566777777777777776 777777777777777777777777776665 5666677777
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcHHH-----HHHH---HHH-----HHHhccccHHHHHHHHHHhHhhCCCCHHHH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHTLT-----QLAN---AWL-----NLAVGGSKIQEAYLIFQDFSEKYPMTGLIL 209 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~-----~l~~---a~~-----~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 209 (292)
|.+++++|++++|+.-++.+++.+|.+-.. .++. -|. .-..+.|++..|+.....+++..|.++.++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 777777777777777777777777644211 1111 111 112356889999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDES 283 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~ 283 (292)
...+.|+...|+...|+..++.+-++..++.+.+|.++.++...|+- +...+..-++++|+|..---+.+....
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 777788888899999754444333333
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=8.6e-15 Score=132.26 Aligned_cols=256 Identities=16% Similarity=0.096 Sum_probs=215.6
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChh
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~ 88 (292)
.++.....|+...|.... +.....|. +.+.++...+.-....+++.|...+.++ ..+....+..-+.+..-+++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 345667789999998884 36666787 5787777778888899999999999887 4555666777777777778999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
+|+..++++++. .|+.+..+..+|+++.++++.+.|...|.. |..+..+..++.+-.+.|++-.|..+++++.
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999999998 999999999999999999999999999987 7889999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC------------------------------CCHHHHHHHH
Q 022777 164 QIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP------------------------------MTGLILNGKA 213 (292)
Q Consensus 164 ~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p------------------------------~~~~~~~~la 213 (292)
-.+|++..+++....+-+.. |..+.|.....++++.+| .||.++...|
T Consensus 747 lkNPk~~~lwle~Ir~ElR~--gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRA--GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred hcCCCcchhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 99999998888866655543 346666666666555554 4567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
.++....++++|.+.|.++++++|++.++|..+-..+...|.. -.+++++.....|.|-
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 8999999999999999999999999999999999999988965 7788888888999985
No 50
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-14 Score=125.25 Aligned_cols=253 Identities=12% Similarity=0.019 Sum_probs=171.7
Q ss_pred hccHHHHHhh-c--cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcC---------
Q 022777 19 LGAYQAAINN-S--DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSS--------- 83 (292)
Q Consensus 19 ~g~~~~Ai~~-~--~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~--------- 83 (292)
.|++..|+.. + +....-|+ ++.....+|.++...|+..+|+.-|++. +|....++-..|.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~-NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRC-NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCc-cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4455555444 1 23334455 2444555566666666666666666544 33334443333333332
Q ss_pred -------------------------CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----C
Q 022777 84 -------------------------PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----G 133 (292)
Q Consensus 84 -------------------------~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~ 133 (292)
.++++.|+...++.+.. +|.+.++++..|.++...|++++|+-.|+. |
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 34566677777777776 788888888888888888888888888876 5
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT-QLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~-~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
...+++.-+..+|+..|++.+|...-+.+.+.-|.+... .+.-+.+.+-.. ---++|..++++.+...|.-..+.+.+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 667777777888888888888888888887777766422 111111111111 125778888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
|.++...|++.++++.+++.|...|+.. .+..||.+....+.+ +.++|..+++++|++...+.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 8888888999999999999888888754 567788888777777 88888888888888876544
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.3e-14 Score=120.03 Aligned_cols=226 Identities=13% Similarity=0.068 Sum_probs=111.1
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc-----HHHHHHHHH
Q 022777 44 CLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN-----ATLRLIAGI 115 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~-----~~~~~~la~ 115 (292)
|+.|.-+.-.++.+.|+..|-.. +|...++...|+.++.+.|..+.||..-+.++.. |+- ..+...||+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHH
Confidence 33444444455555555444332 3333455555555555555555555555555543 331 233444555
Q ss_pred HHHhcCCHHHHHHHhhc----CC-chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---cccc
Q 022777 116 IFMHEEDYNEALKHTNA----GG-TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV---GGSK 187 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~----~~-~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~---~~~~ 187 (292)
-|+..|-++.|...|.. +. -+++...+..+|....++++|+..-++..+..|......++..++-+.+ ...+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 55555555555555544 11 1234444555555555555555555555555554443344433333321 1234
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCc--HHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP-ETLANLVVCSLHQGKS--TSRYLNQL 264 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~--a~~~~~~~ 264 (292)
.+.|...+.++++.+|..+.+-..+|.+.+..|+++.|++.++.+++.+|+.. +++-.|..||.+.|++ ...++.+.
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555542 3344444555555555 44444444
Q ss_pred HhhCCCCh
Q 022777 265 KLTHPDHM 272 (292)
Q Consensus 265 ~~~~P~~~ 272 (292)
.+.+|...
T Consensus 276 ~~~~~g~~ 283 (389)
T COG2956 276 METNTGAD 283 (389)
T ss_pred HHccCCcc
Confidence 44444443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.6e-15 Score=131.54 Aligned_cols=247 Identities=14% Similarity=0.042 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHH-HHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVK-LLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~-~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
.......+.-+...+++.+.++.++.. +|.+..++. .++ ++...|+..+-...--+++.+ .|+.+..|+.+|.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHH
Confidence 344455667788899999988888765 666655544 455 555567877777777888888 9999999999999
Q ss_pred HHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHH
Q 022777 116 IFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~ 190 (292)
-|...|++.+|..+|.+ +....+|+..|..+...|..|+|...|..+.++-|......+..+.=+... +.+.-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t--~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT--NNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh--ccHHH
Confidence 99999999999999998 567789999999999999999999999999999888754444433333333 45999
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C---CCCHHHHHHHHHHHHhcCCc--HHHHH
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK----D---AKDPETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
|...|.++....|.+|.++..+|++....+.|.+|+.+|+.++.. . +.....+.|+|.++.+.+++ |+.++
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999933 1 22345689999999999998 99999
Q ss_pred HHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 262 NQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 262 ~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
++++...|+++.+.. +.-..+.||+|+.+|
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999987555 467788889888776
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1e-14 Score=127.24 Aligned_cols=179 Identities=12% Similarity=0.057 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
+.-..+|.-|...++.++|+.+|++ |....++.++|.=|+.+++...|+..|+++++++|.+...+++++..+--
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 3334466666677778999999987 77888999999999999999999999999999999998766666655444
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRY 260 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~ 260 (292)
.++ ..=|+-.|++++..-|+|+.+|..+|.||.+.++.++|++-|.+++.....+..++..+|.++.+.++. |..+
T Consensus 411 m~M--h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 411 MKM--HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hcc--hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 333 667899999999999999999999999999999999999999999999988999999999999999887 6666
Q ss_pred HHHHHhh-------CCCCh----hHHhHHhhHHHHHHHH
Q 022777 261 LNQLKLT-------HPDHM----LVKRASSGDESFERAL 288 (292)
Q Consensus 261 ~~~~~~~-------~P~~~----~~~~~~~~~~~~~~~~ 288 (292)
+++-.+. .|+-- +......+.++|++|-
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 6665552 22111 2344566777777763
No 54
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=1.5e-14 Score=125.79 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=164.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC-CHHHHHHHhhc-----CCchhHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE-DYNEALKHTNA-----GGTMELHALNVQ 144 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~-----~~~~~~~~~~a~ 144 (292)
..++.-+-.++...++.++|+..+.+++.. +|++..++...+.++...| ++++++..+++ |.+.+++..++.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 344444444555667889999999999988 8999999999999999888 67999999876 788888888888
Q ss_pred HHHhCCCh--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc---
Q 022777 145 IFLKMHRS--DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM--- 219 (292)
Q Consensus 145 ~~~~~~~~--~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--- 219 (292)
++...|+. ++++..++++++.+|.+...+...+|+.-.. +++++|+..+.++++.+|.|..+|+.++.++.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l--~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL--GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 88888874 6788999999999999987777777765544 4599999999999999999999999999998876
Q ss_pred CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC----Cc--HHHHHHHHHhhCCCChhHHhH
Q 022777 220 GNF----DEAEGLLLDALNKDAKDPETLANLVVCSLHQG----KS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 220 g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|.+ ++++.+..+++.++|+|..+|..++.++...+ +. +.++..++...+|+++...++
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~ 260 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSD 260 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHH
Confidence 333 46788888999999999999999988887733 32 778888888888888875554
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1e-14 Score=125.61 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=182.5
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhh----------------------------------CCh
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIAL----------------------------------GSY 56 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~----------------------------------g~~ 56 (292)
..+.+|+.|++.+|+..+ +...++|.+ .++.-..|-.+.+. .++
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~-i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPDN-VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChhh-hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 456789999999999884 477788874 44443333333333 444
Q ss_pred hHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-
Q 022777 57 QLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA- 132 (292)
Q Consensus 57 ~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~- 132 (292)
+.|+.+.+++ ++.+..++..=+..+...++.++|+-.|+.+... -|-..+.|..|-.+|+..|++.+|.-.-+.
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 4466666666 6677888888888888999999999999999988 899999999999999999999999887765
Q ss_pred ----CCchhHHHHHH-HHHHhC-CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH
Q 022777 133 ----GGTMELHALNV-QIFLKM-HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG 206 (292)
Q Consensus 133 ----~~~~~~~~~~a-~~~~~~-~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~ 206 (292)
|.+..+.-++| .++.-. ---++|.+.+++.++++|+....-+..+ -+....|++.+++.++++.+..+|+..
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A--EL~~~Eg~~~D~i~LLe~~L~~~~D~~ 472 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA--ELCQVEGPTKDIIKLLEKHLIIFPDVN 472 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH--HHHHhhCccchHHHHHHHHHhhccccH
Confidence 67777777775 333332 3347799999999999999876555544 334446789999999999999998755
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
.++-+|.+....+.+++|..+|..||.++|++..++-.+-.
T Consensus 473 -LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 473 -LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 79999999999999999999999999999999887755443
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.2e-14 Score=120.14 Aligned_cols=262 Identities=15% Similarity=0.139 Sum_probs=207.6
Q ss_pred hhhhhhhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CCch------HHHHHHHHHhh
Q 022777 10 LFNLRNNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-AATP------LQAVKLLALYL 81 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~------~~a~~~la~~~ 81 (292)
++.-..+....+.++|++. .++...+|+ ..++++.+|..+.++|+.+.||..=+.. +.|+ ..++..|+.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 4444466678899999999 678888999 6999999999999999999999655433 2222 44567788888
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc-----C--Cchh---HHHHHHHHHHhCC
Q 022777 82 SSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA-----G--GTME---LHALNVQIFLKMH 150 (292)
Q Consensus 82 ~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-----~--~~~~---~~~~~a~~~~~~~ 150 (292)
...|=++.|...|..++.. |+ -..+...|-.+|....++++|+..-++ + ...+ .+-.+++.+....
T Consensus 118 m~aGl~DRAE~~f~~L~de---~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDE---GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 8888999999999988764 55 467788888999999999999999876 1 2222 3446788888899
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT-GLILNGKAVCCMHMGNFDEAEGLL 229 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 229 (292)
+++.|...+.++++.+|......+.++.+.+. +|+|..|+..++.+++.+|+- +.+...+-.||.+.|+.++.+..+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~--~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELA--KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHh--ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998888888876665 467999999999999999985 568889999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCChhHHhH
Q 022777 230 LDALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 230 ~~al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.++.+..++....+.-.-.+....|.. |..++.+-++.+|+--.+..+
T Consensus 273 ~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 273 RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 999999888654443222344556666 777776666677765544443
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=2e-14 Score=138.96 Aligned_cols=268 Identities=12% Similarity=0.010 Sum_probs=210.2
Q ss_pred hhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~~ 88 (292)
+..+...|+.++|.+.++ +..+. +...+..+...|...|++++|+..|++. ..|+..++..+...+...|+.+
T Consensus 266 i~~y~k~g~~~~A~~vf~--~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFD--GMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHHCCCHHHHHHHHH--hCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 456677899999999943 22223 3567888999999999999999999754 4677778888888888899999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI- 165 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~- 165 (292)
+|.+.+..+.+.+. +.+...+..+...|.+.|++++|.++|++ ..+...+..+...|.+.|+.++|+++++++.+.
T Consensus 343 ~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 343 HAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999998863 45678888999999999999999999998 356667888999999999999999999999875
Q ss_pred -CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 166 -DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 166 -~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
.|+..... +.+......|.+++|..+|+.+.+..+- +...|..+..++.+.|++++|.+.+++. ...|+ ..+
T Consensus 422 ~~Pd~~T~~---~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~ 496 (697)
T PLN03081 422 VAPNHVTFL---AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNM 496 (697)
T ss_pred CCCCHHHHH---HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHH
Confidence 57654211 1122223457899999999999875433 3457889999999999999999998864 23444 556
Q ss_pred HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh----HHhHHhhHHHHHHHHh
Q 022777 243 LANLVVCSLHQGKS--TSRYLNQLKLTHPDHML----VKRASSGDESFERALQ 289 (292)
Q Consensus 243 ~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~ 289 (292)
|..+...+...|+. +...++++.+..|+++. +.++....+++++|.+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 77777777788887 88999999999998763 3345666777777765
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.9e-15 Score=132.94 Aligned_cols=234 Identities=18% Similarity=0.135 Sum_probs=183.8
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
....++..|...+|+-.++ ....+|+ +++++.+||.++...++-..|+..++++ +|.+.+++..||-.|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 3345677899999887755 6667999 7999999999999999999999999988 788899999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccHH--------------------HHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNAT--------------------LRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFL 147 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~--------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~ 147 (292)
..|+..+.+-+.. .|.... .+..+..+|+ +|........++++..-+|.+|.
T Consensus 370 ~~Al~~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL------eaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 370 NQALKMLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL------EAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred HHHHHHHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHH------HHHHhCCCCCChhHHhhhHHHHh
Confidence 9999999999866 443211 1111111111 11111111278899999999999
Q ss_pred hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 227 (292)
..|+|++|+..|+.+++..|.+..++.-++- -+.. ..+..+|+..|++++++.|..+++.+++|++++.+|.|.+|.+
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA-tLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGA-TLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhH-HhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999755544432 2233 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC----------HHHHHHHHHHHHhcCCc
Q 022777 228 LLLDALNKDAKD----------PETLANLVVCSLHQGKS 256 (292)
Q Consensus 228 ~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~ 256 (292)
+|-.||.+.+.. ..+|-.|-.++...+++
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 999999986651 24676666666666665
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=1.8e-14 Score=120.84 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH---HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchh---HH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA---TLRLIAGIIFMHEEDYNEALKHTNA-----GGTME---LH 139 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~---~~ 139 (292)
...+..++..+...|+++.|+..+++++.. .|+++ .+++.+|.++...|++++|+..+++ |+++. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 444555555555555555555555555554 45443 3445555555555555555555554 33333 34
Q ss_pred HHHHHHHHhC--------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHH
Q 022777 140 ALNVQIFLKM--------HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNG 211 (292)
Q Consensus 140 ~~~a~~~~~~--------~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 211 (292)
..+|.++... |++++|++.+++++..+|++....-+...+ .. .... .......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--~~----~~~~-------------~~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--DY----LRNR-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--HH----HHHH-------------HHHHHHH
Confidence 5555555543 455555555555555555553221111000 00 0000 0012346
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKD---PETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
+|.++...|++.+|+..|++++...|++ +++++.+|.++...|++ |.++++.+...+|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7888999999999999999999997765 57899999999999998 88888888877764
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=4.6e-14 Score=129.71 Aligned_cols=247 Identities=19% Similarity=0.121 Sum_probs=167.1
Q ss_pred HHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CC-chHHHHHHHHHhhcCCCChhHHHHHHHH
Q 022777 22 YQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AA-TPLQAVKLLALYLSSPDNKESTISSLKE 96 (292)
Q Consensus 22 ~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~ 96 (292)
..+++...+ +.+.+|.| +.+.++++.-|..+++.+.|+...+++ ++ ....+|..||.++..++++..|+.+...
T Consensus 460 h~kslqale~av~~d~~d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD-PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 344444422 55567774 678899999999999999999999877 34 4588999999999999999999999999
Q ss_pred HhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--------------CCc---------------------------
Q 022777 97 WLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--------------GGT--------------------------- 135 (292)
Q Consensus 97 ~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------~~~--------------------------- 135 (292)
++.. .|+|.........+-...|+.++|+..+.. .+.
T Consensus 539 al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 539 ALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 9988 788777777777777777888888877652 000
Q ss_pred ---------------------------------hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 136 ---------------------------------MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 136 ---------------------------------~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
...+...+..+...+..++|...+.++-.+.|.........+.....
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH
Confidence 01233344555556666666666666666665554333333333322
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEG--LLLDALNKDAKDPETLANLVVCSLHQGKS--TS 258 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~ 258 (292)
+|+..+|.+.|..++..+|+++.....+|.++.+.|+..-|.. ++..+++++|.++++|+.+|.+....|+. |.
T Consensus 697 --~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 --KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred --HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 2446666666666666666666666666666666666666666 66666666666666666666666666665 66
Q ss_pred HHHHHHHhhCCCChh
Q 022777 259 RYLNQLKLTHPDHML 273 (292)
Q Consensus 259 ~~~~~~~~~~P~~~~ 273 (292)
+.|+.+.++.+.+|.
T Consensus 775 ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 775 ECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhccCCCc
Confidence 666666666666653
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.65 E-value=2.9e-13 Score=134.07 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=131.7
Q ss_pred hhhhhccHHHHHhhc-cCCC--CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCCh
Q 022777 15 NNFYLGAYQAAINNS-DLTN--LPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~--~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+...|+.+.|.+.. ++.+ ..|+ ...+..+...|.+.|++++|+..++.. ..|+..++..+...+.+.|+.
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~Pd--vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEAN--VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 444556666666663 2322 2343 345555666666666666666666543 345555556666666666666
Q ss_pred hHHHHHHHHHhc--CCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 88 ESTISSLKEWLS--DPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 88 ~~A~~~~~~~l~--~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
++|.+++.++.. .+..|+ ...+..+-..|.+.|++++|.++|+. +.++..+..+...|.+.|++++|..++
T Consensus 559 deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666666666643 222343 34445555566666666666666665 234455566666666666666666666
Q ss_pred HHHHhh--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 022777 160 RAMQQI--DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY-PMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK- 235 (292)
Q Consensus 160 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 235 (292)
+++.+. .|+.... . +.+..+...|++++|..+++++.+.. +.+...++.+...|.+.|++++|++.|++....
T Consensus 638 ~eM~~~Gv~PD~~Ty-n--sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 638 DDMKKKGVKPDEVFF-S--ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHcCCCCCHHHH-H--HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 666654 3443211 0 11111222345666666666655432 334455566666666666666666666655432
Q ss_pred -CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 236 -DAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 236 -~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
.| +...|..+...+.+.|+. |.++++++.+
T Consensus 715 ~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 715 LRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23 234455555555555554 5555555443
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.6e-14 Score=123.19 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=169.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhC
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKM 149 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~ 149 (292)
..+|.+|...++.++|+..|+++++. +|+...+|.++|.-|+.+++...|+..|++ |.+-.+++-+|+.|..+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 34566666667889999999999999 999999999999999999999999999998 67778999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022777 150 HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLL 229 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (292)
+-+.=|+-.++++.+.-|.+...+.+++.++.. .++.++|+.+|.+++.....+..++..+|.++.++++..+|..+|
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k--l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPNDSRLWVALGECYEK--LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999888888877754 456999999999999988888899999999999999999999999
Q ss_pred HHHHh-------hCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 230 LDALN-------KDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 230 ~~al~-------~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++-++ ..|.-..+..-|+..+.+.+++ |..+..+....+|.-...+.+
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence 99988 3455455666677777788877 777777776665544444433
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.8e-14 Score=124.41 Aligned_cols=240 Identities=15% Similarity=0.044 Sum_probs=196.2
Q ss_pred cHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHH
Q 022777 21 AYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKE 96 (292)
Q Consensus 21 ~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 96 (292)
++.+|..+.+ .+.++..+ +.+..-.+......|+++.|..+++.+ +.+..++++.++..+..+|+.++|+..|-+
T Consensus 471 ~~~~aqqyad~aln~dryn-~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYN-AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred chhHHHHHHHHHhcccccC-HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 4666666644 55555553 456666788888999999999999988 344588999999888899999999999988
Q ss_pred HhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH
Q 022777 97 WLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL 171 (292)
Q Consensus 97 ~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 171 (292)
+-.. --++.++++.++.+|....++.+|++++.+ |.+|..+..++.+|-+.|+-.+|-+.+=...+.-|-+..
T Consensus 550 lh~i--l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie 627 (840)
T KOG2003|consen 550 LHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE 627 (840)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH
Confidence 8655 567899999999999999999999999988 899999999999999999999998887777777787764
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
.--.++-+++. ..-+++|+..|+++.-..|+........+.|+.+.|+|+.|...|+...+..|.|.+.+--|..+--
T Consensus 628 ~iewl~ayyid--tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 628 TIEWLAAYYID--TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHHh--hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 33333333443 2348999999999999999999988999999999999999999999999999999998877777666
Q ss_pred hcCCc-HHHHHHHHH
Q 022777 252 HQGKS-TSRYLNQLK 265 (292)
Q Consensus 252 ~~g~~-a~~~~~~~~ 265 (292)
..|-. +.++..++.
T Consensus 706 dlgl~d~key~~kle 720 (840)
T KOG2003|consen 706 DLGLKDAKEYADKLE 720 (840)
T ss_pred cccchhHHHHHHHHH
Confidence 66654 555554443
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=3.2e-14 Score=119.40 Aligned_cols=179 Identities=15% Similarity=0.051 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch---HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH---H
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATP---LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT---L 109 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~---~ 109 (292)
....++.+|..+...|++++|+..+++. .|.+ ..++..++.++...|++++|+..|+++++. .|+++. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 5788999999999999999999999876 3433 357889999999999999999999999988 787765 6
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q 022777 110 RLIAGIIFMHE--------EDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLAN 176 (292)
Q Consensus 110 ~~~la~~~~~~--------g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~ 176 (292)
++.+|.++... |++++|++.+++ |.++.+...+..+... ... +. ...+..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~---~~----------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR---LA----------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH---HH----------HHHHHH
Confidence 89999999876 889999999987 5554443333222111 000 00 001223
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 177 AWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 177 a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
+.+++ ..|++.+|+..|++++...|++ +.+++.+|.++..+|++++|...++......|+
T Consensus 173 a~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 173 ARFYL--KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHH--HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33333 4567999999999999997765 589999999999999999999998887766663
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=1.6e-14 Score=111.88 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=95.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 156 ERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
+..++++++++|++.. ..++... ..|++++|...|++++..+|+++.+++.+|.++...|++++|+..|++++.+
T Consensus 13 ~~~~~~al~~~p~~~~---~~g~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPETVY---ASGYASW--QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHHHH---HHHHHHH--HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4568888888888632 2233333 3567888998899988888888888889999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 236 DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 236 ~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
+|+++.+++++|.++...|++ |+..++++++..|+++.......
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999988888999888888888 88888888888888887665433
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.63 E-value=7.4e-13 Score=131.20 Aligned_cols=268 Identities=11% Similarity=0.048 Sum_probs=151.6
Q ss_pred hhhhhccHHHHHhhc-cCCC--CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCCh
Q 022777 15 NNFYLGAYQAAINNS-DLTN--LPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~--~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+...|+++.|.... ++.+ ..|+ ...+..+..+|.+.|+.++|...++.. ..|+..++..+...+.+.|+.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD--~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKAD--CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 334456666666552 2222 2333 344555566666666666666666543 245555666666666666666
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
++|+..|..+...+..|+ ...+..+...|.+.|++++|..++++ .++...+..+...|.+.|++++|.+++
T Consensus 524 eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666655544443 44555555666666666666666654 122334555556666666666666666
Q ss_pred HHHHhhC--CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 160 RAMQQID--EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 160 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
+++.+.+ |+.. .... .+..+...|++++|+.+|+++... .| +...++.+...+.+.|++++|.+++.++.+.
T Consensus 603 ~~M~e~gi~p~~~-tyns--LI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 603 QMIHEYNIKGTPE-VYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHcCCCCChH-HHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6666553 2221 1111 112223345677777777776654 33 3556677777777777777777777777665
Q ss_pred C-CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh--CCCChhH---HhHHhhHHHHHHHHh
Q 022777 236 D-AKDPETLANLVVCSLHQGKS--TSRYLNQLKLT--HPDHMLV---KRASSGDESFERALQ 289 (292)
Q Consensus 236 ~-p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~--~P~~~~~---~~~~~~~~~~~~~~~ 289 (292)
. +-+..++..++..|.+.|+. |.++++.+.+. .|+-... ....-..+++++|+.
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3 23455666677777777776 77777776543 4443321 112334555666654
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.63 E-value=3e-13 Score=123.16 Aligned_cols=249 Identities=18% Similarity=0.152 Sum_probs=187.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----------CCchHHHHHH-HHHhhcCCCChhHHHHHHHHHhc
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----------AATPLQAVKL-LALYLSSPDNKESTISSLKEWLS 99 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----------~~~~~~a~~~-la~~~~~~~~~~~A~~~~~~~l~ 99 (292)
....+|. -..+...++..|..+|+++.|+..++.+ ..+....... +|.+|..++++.+|+..|++++.
T Consensus 191 ~~~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 191 LGDEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred cccCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445676 4566677999999999999999988866 2555555554 89999999999999999999985
Q ss_pred C------CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CCchhH---HHHHHHHHHhCCChHHHHHHHH
Q 022777 100 D------PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GGTMEL---HALNVQIFLKMHRSDYAERQLR 160 (292)
Q Consensus 100 ~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~~~---~~~~a~~~~~~~~~~~A~~~l~ 160 (292)
. ..+|....++..||.+|..+|++++|..++++ ..++++ +..++.++..++++++|..+++
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3 12577788899999999999999999999987 234443 4566789999999999999999
Q ss_pred HHHhhC-----CCcHHHHHHHHHHH---HHhccccHHHHHHHHHHhHhhC--------CCCHHHHHHHHHHHHhcCCHHH
Q 022777 161 AMQQID-----EDHTLTQLANAWLN---LAVGGSKIQEAYLIFQDFSEKY--------PMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 161 ~~~~~~-----p~~~~~~l~~a~~~---l~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~ 224 (292)
+++++. +++. .++..+.+ ++...|++++|..+|++++... +.....++.+|..+.+.+++.+
T Consensus 350 ~al~i~~~~~g~~~~--~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNV--NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHhhccccch--HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 998862 3441 12221111 2234578999999999987642 3334688999999999999999
Q ss_pred HHHHHHHHHhh----CCCCHH---HHHHHHHHHHhcCCc--HHHHHHHHHh-----hCCCChhHHhHHhhHH
Q 022777 225 AEGLLLDALNK----DAKDPE---TLANLVVCSLHQGKS--TSRYLNQLKL-----THPDHMLVKRASSGDE 282 (292)
Q Consensus 225 A~~~~~~al~~----~p~~~~---~~~~l~~~~~~~g~~--a~~~~~~~~~-----~~P~~~~~~~~~~~~~ 282 (292)
|.+.|.++..+ .|++|+ .+.||+.+|..+|++ |.++..++.. ..+.+|...+......
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 99999999876 466654 467899999999999 8877777663 3455555544443333
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.1e-15 Score=126.21 Aligned_cols=268 Identities=15% Similarity=0.131 Sum_probs=208.6
Q ss_pred Cchhhhhh-hhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhc
Q 022777 8 DHLFNLRN-NFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLS 82 (292)
Q Consensus 8 ~~~~~~~~-~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~ 82 (292)
++...... ++.+..|.+|+... ..++.-|++ +..|.-.+..++..|++++|+...++. .+.........+.+..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34555554 45578899999884 477788984 777778999999999999999888765 5555666667777766
Q ss_pred CCCChhHHHHHHH---------------HHhcCCC-CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHH
Q 022777 83 SPDNKESTISSLK---------------EWLSDPA-IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHAL 141 (292)
Q Consensus 83 ~~~~~~~A~~~~~---------------~~l~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~ 141 (292)
..++..+|.+.++ +++.... .|-=..+....+.++...|++++|...--. +.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 6666554443332 2221110 133356778889999999999988877544 688899999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHH-------HHHH---HHHhccccHHHHHHHHHHhHhhCCCCH----H
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLA-------NAWL---NLAVGGSKIQEAYLIFQDFSEKYPMTG----L 207 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~-------~a~~---~l~~~~~~~~~A~~~~~~~~~~~p~~~----~ 207 (292)
++.++...++.+.|..++.++++++|++.....+ +.|- +.....|++.+|.++|..++..+|++. -
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 9999999999999999999999999999533221 1111 122346889999999999999999864 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.|.++|.+...+|+..+|+.....+++++|....++...|.|+..++++ |.+.++++.++..+ +.++++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~ 359 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRT 359 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHH
Confidence 7899999999999999999999999999999999999999999999999 99999999987766 555544
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.61 E-value=1.6e-13 Score=132.73 Aligned_cols=244 Identities=11% Similarity=-0.003 Sum_probs=197.0
Q ss_pred hhhhhhhhccHHHHHhhc-cCC--CCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCC
Q 022777 12 NLRNNFYLGAYQAAINNS-DLT--NLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSP 84 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~--~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~ 84 (292)
.+..+...|++++|++.+ ++. ...|+ ...+..+..++...|++++|...+... .+++...+..|...|.+.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSID--QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 345677789999999994 333 25676 356778899999999999999887654 467777788899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAERQ 158 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~ 158 (292)
|+.++|..+|.++.+ | |...|..+...|.+.|+.++|++.|++ .++...+..+...+...|.+++|..+
T Consensus 374 G~~~~A~~vf~~m~~----~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 374 GRMEDARNVFDRMPR----K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCHHHHHHHHHhCCC----C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999998753 3 567788999999999999999999987 34555677777889999999999999
Q ss_pred HHHHHhh---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 159 LRAMQQI---DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 159 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
++.+.+. .|+... ..+.+.++...|++++|.++++++- ..| +...|..+...+...|+++.|+..+++.+.+
T Consensus 449 f~~m~~~~g~~p~~~~---y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 449 FQSMSENHRIKPRAMH---YACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHhcCCCCCccc---hHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 9999864 454321 1122233345678999999998762 233 4667999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 236 DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 236 ~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
.|++...+..++.+|...|++ |.++++.+.+.
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999998899999999999998 88888888764
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.9e-13 Score=118.28 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=86.9
Q ss_pred hhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
..|..|+|+.||.. .+.+.++|.|++ .+.-...+|..+|+|++|+..-.+. +|.....+...+.-+...|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhv-lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHV-LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccc-hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 56889999999999 568888998653 3444678899999999999988776 677788999999988899999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
+..|.+-++. +|+|......+++++
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 9999999999 999999999888887
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=1e-12 Score=120.97 Aligned_cols=272 Identities=14% Similarity=0.109 Sum_probs=207.4
Q ss_pred hhhccHHHHHhhc-cCCCCC--CchHHHHHHHHHHH-HHhhCChhHHHHhhhhc-C-------CchHHHHHHHHHhhcCC
Q 022777 17 FYLGAYQAAINNS-DLTNLP--PDDAVERDCLVYRS-YIALGSYQLVISEIDES-A-------ATPLQAVKLLALYLSSP 84 (292)
Q Consensus 17 ~~~g~~~~Ai~~~-~~~~~~--p~~~~~a~~~la~~-~~~~g~~~~Al~~~~~a-~-------~~~~~a~~~la~~~~~~ 84 (292)
.-.|....|+... ...... |+ ....+.+.++. ..+.+..++++.+..++ + .-...++..+|-.|..+
T Consensus 368 saag~~s~Av~ll~~~~~~~~~ps-~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~ 446 (799)
T KOG4162|consen 368 SAAGSDSKAVNLLRESLKKSEQPS-DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ 446 (799)
T ss_pred HHhccchHHHHHHHhhcccccCCC-cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH
Confidence 3467888888883 344334 65 34555555554 45568888888887765 1 11233444445444311
Q ss_pred ----C-------ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHH
Q 022777 85 ----D-------NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFL 147 (292)
Q Consensus 85 ----~-------~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~ 147 (292)
+ ...++++.+++++.. +|.|+.+.+.++.-|..+++.+.|+...++ .+++.++.+++.++.
T Consensus 447 A~~a~~~seR~~~h~kslqale~av~~--d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 447 ARQANLKSERDALHKKSLQALEEAVQF--DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS 524 (799)
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 1 126788999999988 899999999999999999999999999887 578889999999999
Q ss_pred hCCChHHHHHHHHHHHhhCCCcHH-------------------------HHHHH--------------------------
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHTL-------------------------TQLAN-------------------------- 176 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~~-------------------------~~l~~-------------------------- 176 (292)
..+++.+|+.+.+.++.-.|+|.. +.+..
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcc
Confidence 999999999999999887666300 00000
Q ss_pred -----------------------------------------------HHHH---HHhccccHHHHHHHHHHhHhhCCCCH
Q 022777 177 -----------------------------------------------AWLN---LAVGGSKIQEAYLIFQDFSEKYPMTG 206 (292)
Q Consensus 177 -----------------------------------------------a~~~---l~~~~~~~~~A~~~~~~~~~~~p~~~ 206 (292)
.|.. +....+.-++|..++.++...+|..+
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~ 684 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA 684 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH
Confidence 0000 00011346778889999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHH--HHHHHHhhCCCChh----HHhHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSR--YLNQLKLTHPDHML----VKRAS 278 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~--~~~~~~~~~P~~~~----~~~~~ 278 (292)
..++..|.++...|++.+|...|..++.++|+++.....+|.++.+.|++ +.+ ++..+++++|.+|. ...+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 655 99999999999985 56678
Q ss_pred hhHHHHHHHHhhc
Q 022777 279 SGDESFERALQSV 291 (292)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (292)
++.|+++.|...|
T Consensus 765 k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 765 KKLGDSKQAAECF 777 (799)
T ss_pred HHccchHHHHHHH
Confidence 8899999888765
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=5.4e-13 Score=126.74 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=80.4
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 92 SSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 92 ~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
..+.....+ .|++++++..||.+....|++++|+.+++. |++..++..++.++.+.+++++|+..++++++.+
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 73 PELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 333444444 555556666666666666666666655554 5555555566666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
|++.......+-+.. ..|++++|+.+|++++..+|+++.++.++|.+++..|+.++|...|+++++...+-..
T Consensus 151 p~~~~~~~~~a~~l~--~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 151 SSSAREILLEAKSWD--EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred CCCHHHHHHHHHHHH--HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 655544333332222 2344666666666655555555556666666666666666666666666555444333
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.59 E-value=6.8e-13 Score=131.17 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=170.6
Q ss_pred HHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHH-----------
Q 022777 44 CLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLI----------- 112 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~----------- 112 (292)
..+...|.+.|++++|...|++...++..+|..+...+...|+.++|+..|+++... ..|+...+...
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHH
Confidence 334556666777777777776654445555565666666667777777777777643 34554433333
Q ss_pred -----------------------HHHHHHhcCCHHHHHHHhhc-CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh--C
Q 022777 113 -----------------------AGIIFMHEEDYNEALKHTNA-GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI--D 166 (292)
Q Consensus 113 -----------------------la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~ 166 (292)
+-..|.+.|+.++|...|+. ..+...+..+...|...|+.++|+.+++++.+. .
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 33778889999999999887 566677888899999999999999999999874 5
Q ss_pred CCcHHH-HHHHHHHHHHhccccHHHHHHHHHHhHhhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 167 EDHTLT-QLANAWLNLAVGGSKIQEAYLIFQDFSEKYP--MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 167 p~~~~~-~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
|+.... .+..+ ....|.+++|..+|+.+.+..+ .+...|..+..++.+.|++++|++.+++. ...|+ +.+|
T Consensus 587 Pd~~T~~~ll~a----~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~ 660 (857)
T PLN03077 587 PDEVTFISLLCA----CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVW 660 (857)
T ss_pred CCcccHHHHHHH----HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHH
Confidence 776422 22222 2345779999999999985533 34578999999999999999999999985 45665 5667
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH----HhhHHHHHHHHh
Q 022777 244 ANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA----SSGDESFERALQ 289 (292)
Q Consensus 244 ~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~----~~~~~~~~~~~~ 289 (292)
..+...+...|+. +....+++.++.|+++....+ ....++++++.+
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 6666666555665 788889999999999865443 445666776653
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=3.9e-13 Score=125.51 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=72.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
+.+|...|++.+|+..+..+....+.. ...++-.+.+++. .+.+++|+.+|.+++...|++.++...++.++.++|+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~--l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME--LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 356777888888888888888776654 2334444444443 3569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 022777 222 FDEAEGLLLDAL 233 (292)
Q Consensus 222 ~~~A~~~~~~al 233 (292)
.++|.+.+++..
T Consensus 499 ~EkalEtL~~~~ 510 (895)
T KOG2076|consen 499 HEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhccc
Confidence 999999999877
No 75
>PLN02789 farnesyltranstransferase
Probab=99.58 E-value=1.2e-12 Score=113.91 Aligned_cols=212 Identities=11% Similarity=-0.009 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCC-ChhHHHHHHHHHhcCCCCCccHHHHHHHH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAG 114 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~p~~~~~~~~la 114 (292)
..+++-++-.++...+++++|+..+.++ +|.+..++...+.++...| ++++++..+.+++.. +|++..++...+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~ 113 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHH
Confidence 3455555556677788999999999877 6777888887787777777 579999999999998 999999999999
Q ss_pred HHHHhcCCH--HHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---c
Q 022777 115 IIFMHEEDY--NEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV---G 184 (292)
Q Consensus 115 ~~~~~~g~~--~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~---~ 184 (292)
.++...|+. ++++..+++ |.+-.++..++-++...|++++++..+.++++.+|.+...+...+++.... +
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 999888874 677888766 788899999999999999999999999999999999875555444443221 1
Q ss_pred c--ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 185 G--SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 185 ~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
. ...++++.+..+++...|+|..+|+.++.++.. .++..+|...+.+++..+|+++-++.-|+.++..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 1 113578888889999999999999999999988 4567789999999999999999999888888865
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.57 E-value=9.8e-13 Score=130.04 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=189.6
Q ss_pred hhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCCh
Q 022777 13 LRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~ 87 (292)
+..+...|++++|...++ +.. |+ ...+..+...|.+.|++++|+..|++. ..|+..++..+...+...|+.
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~~--~d--~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRMET--KD--AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCCC--CC--eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 345566788888888843 433 32 345666778888888888888888743 345555555555566677888
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+.+.+.+..+.+.+..| +..++..+...|.+.|++++|.++|++ ..+...+..+...|.+.|++++|+..++++...
T Consensus 406 ~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 406 DVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 88888888888776444 467778888999999999999999988 345567788888899999999999999999754
Q ss_pred -CCCcHHH-HHHH-------------------------------HHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 166 -DEDHTLT-QLAN-------------------------------AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 166 -~p~~~~~-~l~~-------------------------------a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
.|+.... .+.. +.+.++.+.|++++|...|+++ +.+...|+.+
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~l 560 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNIL 560 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHH
Confidence 4655311 1111 1223334457788888888886 4567788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh------HHhHHhhHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNK--DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML------VKRASSGDE 282 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~------~~~~~~~~~ 282 (292)
...+.+.|+.++|+..|++..+. .|+... +..+...+.+.|.. +.++++.+.+.++-.|. +.+.....+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999988764 566544 33455556677876 88888888754333332 445566777
Q ss_pred HHHHHHhhc
Q 022777 283 SFERALQSV 291 (292)
Q Consensus 283 ~~~~~~~~~ 291 (292)
++++|..-+
T Consensus 640 ~~~eA~~~~ 648 (857)
T PLN03077 640 KLTEAYNFI 648 (857)
T ss_pred CHHHHHHHH
Confidence 788776543
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=1.4e-13 Score=106.46 Aligned_cols=115 Identities=10% Similarity=-0.114 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
|+.+..+|.++...|++++|...++.++..+|++.......+.+... .|++++|+..|++++..+|+++.+++++|.+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM--LKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 33355567888889999999999999999999998766666655444 4679999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
+...|++++|+..|++++.+.|+++..+.+++.+...
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999888876543
No 78
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=8.8e-12 Score=107.34 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=195.6
Q ss_pred hhhhhhccHHHHHhh-ccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--C--CchHHHHHHHHHhhcCCCChh
Q 022777 14 RNNFYLGAYQAAINN-SDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--A--ATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~-~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~--~~~~~a~~~la~~~~~~~~~~ 88 (292)
...+..|+|.+|... ....+..+. ..-++..-+++.-++|+++.+-.++.++ . ++........+.++...||++
T Consensus 92 l~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 92 LLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 345678999999998 446666665 3556666778888999999999999877 2 333445666788888899999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------------------------------------
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------------------------------------ 132 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------------------------ 132 (292)
.|...+.++++. .|.++.+..+..++|+..|++.+.+..+.+
T Consensus 171 aA~~~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 999999999998 899999999999999999999999988873
Q ss_pred -----------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 133 -----------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 133 -----------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
..+|+....++.-+...|+.++|.+++++.++..-|..+..+. -. ..-++...=+...++-+..
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~----~~-l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI----PR-LRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH----hh-cCCCCchHHHHHHHHHHHh
Confidence 1446666667788899999999999999999986655422222 11 1124466667777888899
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+|++|.++..+|.++++.+.|.+|..+|+.+++..|...+ +..+|.++...|++ |....+..+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998655 55889999999998 7777666654
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=1.9e-13 Score=104.59 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=108.7
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
.+|++++..+|++....+..+..++. .|++++|...|++++..+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ--QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788899999887666666655554 4569999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHH
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDES 283 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~ 283 (292)
|++++.++++|.++...|++ |..+++++.+.+|+++....+......
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 99999999999999999998 899999999999999987777665544
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=3.5e-13 Score=128.00 Aligned_cols=187 Identities=13% Similarity=0.016 Sum_probs=150.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-CCchhHHHHHHHHHHhCCCh
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-GGTMELHALNVQIFLKMHRS 152 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~a~~~~~~~~~ 152 (292)
+..+-......|+.++|=+.+-.-+ .++...-|.+..-+....+++.+.+. +.+++++.++|.+....|++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQA--------RQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRS 102 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHH--------HHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCc
Confidence 3344444555666655533322111 22334445556566666777777766 78899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
++|+.+++.+++..|++...++..+.+.. ..+++++|+..+++++...|+++.+++.+|.++.+.|++++|+..|+++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~--~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVK--RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999877776665443 3567999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 233 LNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 233 l~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
+..+|+++.++.++|.++...|+. |...|+++.+..-.
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999998 88899888776433
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=1e-12 Score=118.95 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=216.6
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+...|-.++|.+-+...+ +++..|+ +.+..-+.|..+-.+|+.++|...+..+ ++.....|..+|.++....++
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 4556688999999999955 7778999 7899999999999999999999999876 566678899999999988999
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAM 162 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~ 162 (292)
++|+.+|+.++.. +|+|...+.-++.+..++|+++-....-.+ |..-..|.-.+..+...|++..|..++++.
T Consensus 92 ~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 92 DEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999988776554 666677888888899999999999999998
Q ss_pred HhhC---CCcHHHHHHHHHHH---HHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 163 QQID---EDHTLTQLANAWLN---LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 163 ~~~~---p~~~~~~l~~a~~~---l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
.+.. |+........+..+ +..+.|.+++|++...+--...-+...+.-..|.++++++++++|...|+..+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 8764 44432222222111 11234567888776666544444455566778999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH-hcCCc-H-HHHHHHHHhhCCCChhHHhH---HhhHHHHHHHHhhc
Q 022777 237 AKDPETLANLVVCSL-HQGKS-T-SRYLNQLKLTHPDHMLVKRA---SSGDESFERALQSV 291 (292)
Q Consensus 237 p~~~~~~~~l~~~~~-~~g~~-a-~~~~~~~~~~~P~~~~~~~~---~~~~~~~~~~~~~~ 291 (292)
|+|.+.+..+-.++. -.+.. + ..++..+.+..|.+.-+.++ ....+.|.+.+.+|
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 999998887777774 33333 3 37888888888888766554 33346666666554
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=1e-12 Score=107.04 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 022777 149 MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC-MHMGN--FDEA 225 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~--~~~A 225 (292)
.++.++++..++++++.+|++...+..++.+++. .|++++|+..|++++...|+++.++..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~--~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW--RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666666666665555544444433 23466666666666666666666666666653 45555 3666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 226 EGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
+..++++++.+|+++.+++++|..+...|++ |+.+++++++..|.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 6666666666666666666666666666665 6666666666555443
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=6.3e-12 Score=114.06 Aligned_cols=249 Identities=12% Similarity=-0.016 Sum_probs=204.0
Q ss_pred hccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--C-CchHHHHHHHHHhhcCCCChhHHHHHH
Q 022777 19 LGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--A-ATPLQAVKLLALYLSSPDNKESTISSL 94 (292)
Q Consensus 19 ~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~-~~~~~a~~~la~~~~~~~~~~~A~~~~ 94 (292)
.+.++=|+..+. .+...|.. ...+...+..--.-|..++-...++++ . |....-|...+.-+-..||...|...+
T Consensus 529 ~~~~~carAVya~alqvfp~k-~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCK-KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhhccch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 444555555543 77777873 343443333333347777777788877 3 444555666777666779999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH
Q 022777 95 KEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 95 ~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~ 170 (292)
..+... +|++.++++..-.+.+....++.|...|.+ .+....+..-+.+...+++.++|+.+++++++..|+-.
T Consensus 608 ~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 608 DQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 999988 899999999999999999999999999987 45666777788888899999999999999999999988
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022777 171 LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCS 250 (292)
Q Consensus 171 ~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 250 (292)
-+++.++.+.- .+++++.|...|...++..|.++.+|..++.+-.+.|+.-.|...+.++.-.+|+++..|......-
T Consensus 686 Kl~lmlGQi~e--~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 686 KLWLMLGQIEE--QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHHhHHHH--HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 77777776543 3466999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCc--HHHHHHHHHhhCCCCh
Q 022777 251 LHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 251 ~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
...|+. |..++.++++-.|++.
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccc
Confidence 999987 8889999999899886
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.55 E-value=6.7e-13 Score=118.10 Aligned_cols=204 Identities=11% Similarity=-0.041 Sum_probs=155.3
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCC---ccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhH
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIG---SNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMEL 138 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~ 138 (292)
+|....++..++.++...|+.+.+...+.+.... .| +..+.....|.++...|++++|+..+++ |.+..+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQA--LAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 4667888889998888888888888877777655 34 3456778889999999999999999887 666655
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 139 HALNVQIFLK----MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 139 ~~~~a~~~~~----~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
... +..+.. .+..+.+...++.....+|+........++++.. .|++++|...+++++...|+++.++..+|.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE--AGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 543 333333 4555556555555334556655444444555444 467999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH
Q 022777 215 CCMHMGNFDEAEGLLLDALNKDAKDPE----TLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~ 275 (292)
++...|++++|+..+++++...|.++. .+..++.++...|++ |...++++....|..+...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 999999999999999999999876543 345789999999998 9999999877777544443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=1.9e-12 Score=115.14 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=152.8
Q ss_pred CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CC---chHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH
Q 022777 35 PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AA---TPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT 108 (292)
Q Consensus 35 ~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~ 108 (292)
+|+ .+.++..++..+...|+++++...+.+. .+ ...+.....+..+...|++++|+..+++++.. .|++..
T Consensus 2 dp~-~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~ 78 (355)
T cd05804 2 DPD-FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLL 78 (355)
T ss_pred CCc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHH
Confidence 687 6889999999999999999977666554 22 23444555566666789999999999999998 899887
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 022777 109 LRLIAGIIFM----HEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWL 179 (292)
Q Consensus 109 ~~~~la~~~~----~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 179 (292)
++.. +..+. ..|+...+...+.. |........++.++..+|++++|+..++++++.+|++.......+.+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 7663 33333 34566666666643 34455666788999999999999999999999999997666665555
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMTG----LILNGKAVCCMHMGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 237 (292)
+. ..|++++|+..+++.+...|.++ ..+..+|.++...|++++|+..|++++...|
T Consensus 158 ~~--~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 158 LE--MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HH--HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 44 35679999999999998877543 2456799999999999999999999987776
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=1.5e-12 Score=106.07 Aligned_cols=123 Identities=14% Similarity=0.014 Sum_probs=95.8
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccccHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA-VGGSKIQEAYL 193 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~-~~~~~~~~A~~ 193 (292)
.++.++++..+++ |++.+++..+|.+|...|++++|+..|+++++++|++.......+.+... .+....++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4555555555554 66677777777777777777788888888888888887666665554322 23223699999
Q ss_pred HHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 194 IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 194 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
+++++++.+|+++.+++.+|.++++.|++++|+..++++++.+|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999998876643
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=2e-12 Score=117.85 Aligned_cols=218 Identities=20% Similarity=0.139 Sum_probs=162.0
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCC--------CCchHHHHHHH-HHHHHHhhCChhHHHHhhhhc----------CCch-
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNL--------PPDDAVERDCL-VYRSYIALGSYQLVISEIDES----------AATP- 70 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~--------~p~~~~~a~~~-la~~~~~~g~~~~Al~~~~~a----------~~~~- 70 (292)
-+.+++.+|+|+.|+..++ .+++ -|. +..+.. +|..|..++++.+|+..|+++ ..|.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3447788999999998843 3332 343 444444 899999999999999999865 2333
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcC-----CC-CCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CC
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSD-----PA-IGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GG 134 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~ 134 (292)
..++..|+..|..+|++++|..+++++++. +. .|+-...+..++.++..++++++|..++++ +.
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 556778999999999998888877777642 11 455667788899999999999999999987 23
Q ss_pred c---hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-----Cc-----HHHHHHHHHHHHHhccccHHHHHHHHHHh---
Q 022777 135 T---MELHALNVQIFLKMHRSDYAERQLRAMQQIDE-----DH-----TLTQLANAWLNLAVGGSKIQEAYLIFQDF--- 198 (292)
Q Consensus 135 ~---~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p-----~~-----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~--- 198 (292)
+ ......+|.+|..+|++++|++.+++++++.. .+ +...++..+. ..+++.+|...|.+.
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~----~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE----ELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH----HhcccchHHHHHHHHHHH
Confidence 3 34577899999999999999999999998731 11 2334444432 223455555555553
Q ss_pred ----HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 199 ----SEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 199 ----~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
...+|+....+.+||.+|..+|++++|+++.+.++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2345666678999999999999999999999999843
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=5.6e-12 Score=103.23 Aligned_cols=167 Identities=17% Similarity=0.069 Sum_probs=139.6
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
+...+-..... +|++..+ ..++..+...|+-++++.+..+ +.+.+....++......|++..|+..++++..
T Consensus 52 a~~al~~~~~~--~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLR--NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhc--CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 44444444444 7988888 8889999999999998888877 45666666688888999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 022777 165 IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 165 ~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 244 (292)
..|++...+..++.++.. .|++++|...|.++++..|++|.+.+++|..++-.|+++.|+.++.++....+.+..+.-
T Consensus 129 l~p~d~~~~~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQ--LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred cCCCChhhhhHHHHHHHH--ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 999988777777766554 467999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHhcCCc--HHHHH
Q 022777 245 NLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 245 ~l~~~~~~~g~~--a~~~~ 261 (292)
|++.+....|++ |.+..
T Consensus 207 NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 207 NLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHhhcCChHHHHhhc
Confidence 999999898987 55544
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=1.5e-10 Score=106.67 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=73.5
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.|++++|+..++++++..|..+++++..|.++-+.|++.+|...++.+-.+++.|--+...-+..+.+.|+. |.+.+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999988877777788888887 777776
Q ss_pred HHHh
Q 022777 263 QLKL 266 (292)
Q Consensus 263 ~~~~ 266 (292)
...+
T Consensus 287 ~Ftr 290 (517)
T PF12569_consen 287 LFTR 290 (517)
T ss_pred hhcC
Confidence 6654
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-11 Score=109.74 Aligned_cols=245 Identities=16% Similarity=0.106 Sum_probs=176.8
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---------CCch-HHHHHHHHHhhcC
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---------AATP-LQAVKLLALYLSS 83 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---------~~~~-~~a~~~la~~~~~ 83 (292)
..+...++..|+.... .+++. . ....+...+-+|+.+|++.+.+....++ +... ..++..++..+..
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4456677888887743 66666 4 4556666788899999988877666544 0011 1223345556666
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQ 158 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~ 158 (292)
.++++.++..|++.+.. .. . ..++......+++++.... |.-.+-....|..+++.|+|..|+.+
T Consensus 311 ~~~~~~ai~~~~kaLte--~R-t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTE--HR-T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhh--hc-C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 68889999999988765 11 2 4455555666666666654 33333344558899999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 159 LRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 159 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
|.+++..+|++..+.--.+.+++..+ .+..|+...+..++++|+.+..|+..|.++..+.+|++|...|+++++.+|+
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~--~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLG--EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999755544455555544 4999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc-CCc-HHHHHHHHHhhCCCChhHHhH
Q 022777 239 DPETLANLVVCSLHQ-GKS-TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 239 ~~~~~~~l~~~~~~~-g~~-a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+.++.-.+..|.... +.. ..+..++ -..+|.|+.+
T Consensus 459 ~~e~~~~~~rc~~a~~~~~~~ee~~~r----~~~dpev~~i 495 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQRGDETPEETKRR----AMADPEVQAI 495 (539)
T ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHh----hccCHHHHHH
Confidence 999988888887653 333 4455544 3344555544
No 91
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=6.2e-12 Score=96.48 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=94.9
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--H
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--T 257 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a 257 (292)
+.....|++++|..+|+-++..+|.+++.|+++|.|+..+|++.+|+..|.+++.++|+||.+.+++|.|+...|+. |
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 33345678999999999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred HHHHHHHHhhCCCChhHHhHHhhHHHHHHHHh
Q 022777 258 SRYLNQLKLTHPDHMLVKRASSGDESFERALQ 289 (292)
Q Consensus 258 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 289 (292)
.+.|+.++...-.+|.-..++.+-+..-+++.
T Consensus 123 ~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 123 IKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 99999888877677777777766666666554
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.3e-11 Score=101.07 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=132.3
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
|++..+ ..++..+...|+-+.+.....+..-.+|.+.....+++-..+. .|++.+|+..++++....|+++.+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~--~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR--NGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHH--hcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 777778 8888999999999999999999888888886554334433333 4679999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFER 286 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~ 286 (292)
|.+|.+.|++++|...|.+++++.|+++.+..|+|+.+.-.|++ |..++..+...-|.++.|.. +....++|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999999999999999999999999999999998 99999999877776776543 4667777877
Q ss_pred HHh
Q 022777 287 ALQ 289 (292)
Q Consensus 287 ~~~ 289 (292)
|..
T Consensus 221 A~~ 223 (257)
T COG5010 221 AED 223 (257)
T ss_pred HHh
Confidence 754
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.43 E-value=1e-11 Score=106.80 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=160.9
Q ss_pred chhhhhhhhhhccHHHHHhhccCCCC-CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCchHHHHHHHHHhhc
Q 022777 9 HLFNLRNNFYLGAYQAAINNSDLTNL-PPDDAVERDCLVYRSYIALGSYQLVISEIDES-----AATPLQAVKLLALYLS 82 (292)
Q Consensus 9 ~~~~~~~~~~~g~~~~Ai~~~~~~~~-~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~~~a~~~la~~~~ 82 (292)
+++..+.+..+|+++.++.. +... +|. ..+...++..+...++.+.++..++.. .+.+.......|.++.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~e--i~~~~~~~--l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSE--IKKSSSPE--LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHH--S-TTSSCC--CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHHH--hccCCChh--HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 36788899999999998887 4332 444 355555666665545666777777654 2233344455667788
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---CCchhHHHHHHH--HHHhC--CChHHH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---GGTMELHALNVQ--IFLKM--HRSDYA 155 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~~~~a~--~~~~~--~~~~~A 155 (292)
..|+++.|++.+.+ -++.+......++++..+|++.|.+.+++ -+.......++. +.+.. +++.+|
T Consensus 114 ~~~~~~~AL~~l~~-------~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 114 HEGDYEEALKLLHK-------GGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCHHHHHHCCCTT-------TTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HcCCHHHHHHHHHc-------cCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 88999998776543 25688888889999999999999999987 233333444433 33334 479999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 022777 156 ERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF-DEAEGLLLDALN 234 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 234 (292)
...|+++.+..|.+.....+.+.+.+.. |++++|...+.+++..+|.+++++.++..+...+|+. +.+.+++.+.-.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999888777776667777777765 5699999999999999999999999999999999999 667788888888
Q ss_pred hCCCCHHHH
Q 022777 235 KDAKDPETL 243 (292)
Q Consensus 235 ~~p~~~~~~ 243 (292)
.+|++|-+.
T Consensus 265 ~~p~h~~~~ 273 (290)
T PF04733_consen 265 SNPNHPLVK 273 (290)
T ss_dssp HTTTSHHHH
T ss_pred hCCCChHHH
Confidence 999998654
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.43 E-value=2.2e-11 Score=117.12 Aligned_cols=199 Identities=9% Similarity=-0.013 Sum_probs=140.4
Q ss_pred CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH-----------------HHH
Q 022777 34 LPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST-----------------ISS 93 (292)
Q Consensus 34 ~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A-----------------~~~ 93 (292)
.+|. ..+++..+...+...|++++|+..++.+ .|.....++.+|.++.+.++...+ ++.
T Consensus 26 ~~p~-n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 26 YSLS-KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CCcc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 4565 4667777777777777777777777654 344455555566555544444333 333
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC
Q 022777 94 LKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDED 168 (292)
Q Consensus 94 ~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~ 168 (292)
+...+.. .|++-.+++.+|.+|-++|++++|...+++ |.++.+...+|..|... +.++|+..+.+++..
T Consensus 105 ~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 105 ICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3333333 455557888888888888888888888887 78888888888888888 888888888888765
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHH--------------------HHHHHHHHHhcCCHHHHHHH
Q 022777 169 HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLI--------------------LNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 169 ~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------------~~~la~~~~~~g~~~~A~~~ 228 (292)
++. .+++.++.++..+++...|++.+. +.-+-.+|.+.++|++++.+
T Consensus 179 -----------~i~--~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 179 -----------FIK--KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred -----------HHh--hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 111 124666666666666666665433 33333789999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 229 LLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 229 ~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
++.+|+.+|.|..++..++.||..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 999999999999999999999873
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.4e-10 Score=93.20 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
|+.+-|-.+++.+-.+ -|++..+....|..+...|++++|+++|+. |.+...+.....+...+|+.-+|++.+
T Consensus 66 ~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred cchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 4444444444444443 355555555555555555555555555544 233333333344444455555555555
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC
Q 022777 160 RAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG---NFDEAEGLLLDALNKD 236 (292)
Q Consensus 160 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 236 (292)
.+.++.-+.+...+..++-+++. .|.|.+|.-|+++++-.+|.++..+..+|.++.-.| ++.-|.++|.++++++
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~--~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLS--EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55555544444333333333322 233555555555555555555555555555544444 2333455555555555
Q ss_pred CCCHHHHHH
Q 022777 237 AKDPETLAN 245 (292)
Q Consensus 237 p~~~~~~~~ 245 (292)
|.+...++.
T Consensus 222 ~~~~ral~G 230 (289)
T KOG3060|consen 222 PKNLRALFG 230 (289)
T ss_pred hHhHHHHHH
Confidence 544444433
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=4.1e-11 Score=91.55 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=88.8
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
|++..+...++.++...|++++|...++.++..+|++.......+.++... |++++|...+++++..+|+++..+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 445556666677777777777777777888888888776666666555543 569999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
|.++...|++++|+..|+++++++|++....
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999988754
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.9e-10 Score=90.93 Aligned_cols=178 Identities=19% Similarity=0.148 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
..+-.+.-+.+..|+...|...+++. .|.+......-|..+...|++++|+++|..++.+ +|.|...+...-.+.
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 33333445556667777777777654 4445555556666666777788888888888877 787777777777777
Q ss_pred HhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccccHHH
Q 022777 118 MHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT--QLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~--~l~~a~~~l~~~~~~~~~ 190 (292)
..+|+.-+|++.+.. +.+.+++..++.+|+..|+|++|.-.+++++=+.|-+++. +++..++... |..++.-
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g-g~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG-GAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-hHHHHHH
Confidence 777887777777765 6777888888888888888888888888887777777644 3443333322 3356777
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
|...|.++++..|.+...++++-.|....-+
T Consensus 210 arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 7888888888887777777666555544433
No 98
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-11 Score=103.69 Aligned_cols=234 Identities=15% Similarity=0.086 Sum_probs=180.1
Q ss_pred hhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhh---------------c-----CCc-h
Q 022777 13 LRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDE---------------S-----AAT-P 70 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~---------------a-----~~~-~ 70 (292)
+..+...|+|+.|..-. +-.++.|. ...++...++++..+++..+|...++. . .+| -
T Consensus 90 Aa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac 168 (486)
T KOG0550|consen 90 AATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPAC 168 (486)
T ss_pred HHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchh
Confidence 33456678888888773 45666666 355677778888888877776644431 1 122 2
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc----------
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT---------- 135 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~---------- 135 (292)
..+...=+.++...|++++|.++--.+++. ++.+.++++..|.++.-.++.+.|+..+++ |++
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 445555677788889999999999999999 999999999999999999999999999998 222
Q ss_pred --hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHH
Q 022777 136 --MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLIL 209 (292)
Q Consensus 136 --~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 209 (292)
.+.+...|.-..+.|++.+|.+.|.+++.++|++. .+....+.+++. .|+..+|+.--.+++.++|.-..++
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhhhcCHHHHHHH
Confidence 23455668889999999999999999999999984 222333333333 4679999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAK--DPETLANLVVCSL 251 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 251 (292)
...|.|++.+++|++|++.|+++++...+ +...+......+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999987665 4444444443333
No 99
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=9.3e-12 Score=103.84 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
++|.+|+..|.++|...|.|+.+|-+.|.+|.++|+++.|++..+.++.++|....+|..||.+|..+|++ |++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555 4445555
Q ss_pred HHhhCCCCh
Q 022777 264 LKLTHPDHM 272 (292)
Q Consensus 264 ~~~~~P~~~ 272 (292)
+++++|+++
T Consensus 175 aLeldP~Ne 183 (304)
T KOG0553|consen 175 ALELDPDNE 183 (304)
T ss_pred hhccCCCcH
Confidence 555555555
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=9e-11 Score=107.87 Aligned_cols=217 Identities=14% Similarity=0.083 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFM 118 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~ 118 (292)
-+.....++..+..+|=...|+..+++. ..|-....||...|+..+|.....+.++. |.++-.|..+|.+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLH 468 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhcc
Confidence 3566677899999999999999999865 44555677888788888888887777775 667899999999998
Q ss_pred hcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 119 HEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
+.-=|++|.++.+. .+..+...++...+..++|.++..+++..++++|-....++..+.+.+.. ++++.|...|...
T Consensus 469 d~s~yEkawElsn~-~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql--ek~q~av~aF~rc 545 (777)
T KOG1128|consen 469 DPSLYEKAWELSNY-ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL--EKEQAAVKAFHRC 545 (777)
T ss_pred ChHHHHHHHHHhhh-hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH--hhhHHHHHHHHHH
Confidence 88889999988875 23335566666677789999999999999999999988888877777765 4599999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 199 SEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 199 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+...|++...|++++..++++|+..+|...++++++-+-++..+|-|...+....|.+ |.+.++++..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 8888877765
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.9e-10 Score=96.86 Aligned_cols=256 Identities=15% Similarity=0.140 Sum_probs=177.1
Q ss_pred chhhhhhhhhhccHHHHHhhcc-CCC-CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CCch-HHH-----------
Q 022777 9 HLFNLRNNFYLGAYQAAINNSD-LTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES-AATP-LQA----------- 73 (292)
Q Consensus 9 ~~~~~~~~~~~g~~~~Ai~~~~-~~~-~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~-~~a----------- 73 (292)
.+|.+.++|..|+|++|++..+ +-. .+|. .+....++-++.-+|.|.+|.....++ ..|- ..-
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAP--AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCC--cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 3788889999999999998854 322 3343 466778899999999999988766654 2111 111
Q ss_pred ----------------HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----
Q 022777 74 ----------------VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----- 132 (292)
Q Consensus 74 ----------------~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----- 132 (292)
...||.+....-.+.+||.+|++++.+ +|+....-+.+|.+|.+..-|+-+-+++.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 112333322223568999999999988 898888888899999998888877766550
Q ss_pred --------------------------------------------------------------C----CchhHHHHHHHHH
Q 022777 133 --------------------------------------------------------------G----GTMELHALNVQIF 146 (292)
Q Consensus 133 --------------------------------------------------------------~----~~~~~~~~~a~~~ 146 (292)
| .-|+++..++.-|
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 1 3466777777789
Q ss_pred HhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-----------------------------------------
Q 022777 147 LKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG----------------------------------------- 185 (292)
Q Consensus 147 ~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~----------------------------------------- 185 (292)
+.+|++.+|..+.+.. +|..+...+..+.+....|+
T Consensus 296 L~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred cccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 9999999999888655 56554444433333221110
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD-AKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.++++.+..+..+-.-+-++..+.+++|......|++.+|++.|-++-.-+ .+.......++.||...|++ |..++-
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 236666666666666677788899999999999999999999999876544 33444456689999999998 777664
Q ss_pred HHHhhCCCChh
Q 022777 263 QLKLTHPDHML 273 (292)
Q Consensus 263 ~~~~~~P~~~~ 273 (292)
+. ..|.+..
T Consensus 453 k~--~t~~e~f 461 (557)
T KOG3785|consen 453 KT--NTPSERF 461 (557)
T ss_pred hc--CCchhHH
Confidence 32 3444443
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.30 E-value=4.7e-10 Score=108.12 Aligned_cols=188 Identities=9% Similarity=0.023 Sum_probs=150.7
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----C---------
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----G--------- 133 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~--------- 133 (292)
.|.+..++..|...+...|+++++++.++..+.. .|+.+.+++.+|.++++.+++.+|..+ .- +
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHH
Confidence 5777899999999998889999999999999998 999999999999999999998888666 21 2
Q ss_pred ----------CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC
Q 022777 134 ----------GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP 203 (292)
Q Consensus 134 ----------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p 203 (292)
.+..++..+|.||-++|+.++|...++++++.+|+++...--.|+.+.. . +.++|..++.+++..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae--~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE--E-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--h-hHHHHHHHHHHHHHH--
Confidence 2336788889999999999999999999999999997544444444332 2 699999999998776
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------H------------HHHHhcCCc--HHHHH
Q 022777 204 MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL--------V------------VCSLHQGKS--TSRYL 261 (292)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------~------------~~~~~~g~~--a~~~~ 261 (292)
+...+++.++..+-++.+..+|++.+.+..+ + .+|-..+++ +..++
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 5666788888888888888888888774432 1 334444455 88999
Q ss_pred HHHHhhCCCChhH
Q 022777 262 NQLKLTHPDHMLV 274 (292)
Q Consensus 262 ~~~~~~~P~~~~~ 274 (292)
+.+++.+|+|.+.
T Consensus 247 K~iL~~~~~n~~a 259 (906)
T PRK14720 247 KKILEHDNKNNKA 259 (906)
T ss_pred HHHHhcCCcchhh
Confidence 9999999998764
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=1.6e-10 Score=102.66 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH 218 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 218 (292)
+...|..++..|++++|+..|+++++.+|++....+..+.+++. .|++++|+..+++++..+|+++.+++.+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~--~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK--LGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34567888899999999999999999999998777766666554 4679999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 022777 219 MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ 253 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 253 (292)
+|++++|+..|++++.++|+++.+...++.|....
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888775443
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-09 Score=98.29 Aligned_cols=223 Identities=14% Similarity=0.113 Sum_probs=152.8
Q ss_pred hhhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCC
Q 022777 10 LFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~ 86 (292)
+..+..+...|+|++|.... +++.+.|+ ...+......+++.+++|++|+..++.- ........+.=|.|..+.|.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 45788889999999999995 48888788 4677788889999999999999777654 12222222566777778899
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---CCchhHH-HHHHHHHHhCCChHHHHHHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---GGTMELH-ALNVQIFLKMHRSDYAERQLRAM 162 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~-~~~a~~~~~~~~~~~A~~~l~~~ 162 (292)
.++|+..++-+ ++.+.......|+++.+.|+|++|+.+|+. .+..+.- ...+.+.... .--.+ + +.+.
T Consensus 95 ~Dealk~~~~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-a~l~~-~-~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-AALQV-Q-LLQS 166 (652)
T ss_pred HHHHHHHHhcc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HhhhH-H-HHHh
Confidence 99999998832 677788999999999999999999999987 1111111 1111111111 00111 1 2233
Q ss_pred HhhCCCc-HHHHHHHHHHHHHhccccHHHHHHHHHHhHhh--------CCC--C-----HHHHHHHHHHHHhcCCHHHHH
Q 022777 163 QQIDEDH-TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK--------YPM--T-----GLILNGKAVCCMHMGNFDEAE 226 (292)
Q Consensus 163 ~~~~p~~-~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--------~p~--~-----~~~~~~la~~~~~~g~~~~A~ 226 (292)
...-|++ ....+-.+-+.+ +.|+|.+|++.++++... +.+ . ..+...++.++..+|+.++|.
T Consensus 167 v~~v~e~syel~yN~Ac~~i--~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILI--ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred ccCCCcchHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3333443 333333333333 346799999999887221 111 1 247888999999999999999
Q ss_pred HHHHHHHhhCCCCHHHH
Q 022777 227 GLLLDALNKDAKDPETL 243 (292)
Q Consensus 227 ~~~~~al~~~p~~~~~~ 243 (292)
..|...+..+|.|....
T Consensus 245 ~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHHHHhcCCCchHH
Confidence 99999999999887544
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=7.6e-09 Score=91.70 Aligned_cols=122 Identities=18% Similarity=0.089 Sum_probs=110.0
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
+..+.+.+-.+..++..|++++|+..++..+...|+|....-..+-+.+ +.++..+|.+.+++++.+.|+++.+..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~--~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL--EANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 5677888999999999999999999999999999999876666555554 45679999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
|.++++.|++++|+..+.+.+..+|+|+..|..|+..|..+|+.
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999998887775
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=1.6e-10 Score=102.68 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=91.8
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
..+++++|+..|++++...|+++.+++.+|.++...|++++|+..+++++.++|+++.+++++|.++...|++ |+..+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHhhCCCChhHHhHHhhH
Q 022777 262 NQLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 262 ~~~~~~~P~~~~~~~~~~~~ 281 (292)
+++++++|+++.+......+
T Consensus 94 ~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 99999999999877664433
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.21 E-value=4e-10 Score=86.57 Aligned_cols=102 Identities=10% Similarity=-0.090 Sum_probs=91.4
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
++..+..+.+|..+...|++++|++.++-+...+|.+...++.++.+. +..|++.+|+.+|.+++...|++|.++++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~--Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC--QAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 356678888999999999999999999999999999987777766554 345679999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
|.|++..|+.+.|++.|+.++..-
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.3e-08 Score=86.97 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=176.4
Q ss_pred hhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
+..+....+|+.||...+ -.....+.......++|-++..+|+|++|+..++-. +.++.+.+..||-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 445677889999999854 222222223356788999999999999999999865 4445555666776666567777
Q ss_pred HHHHHHHHHhcC--------------C----------CCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchh---HH
Q 022777 89 STISSLKEWLSD--------------P----------AIGSNATLRLIAGIIFMHEEDYNEALKHTNA--GGTME---LH 139 (292)
Q Consensus 89 ~A~~~~~~~l~~--------------~----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~---~~ 139 (292)
+|.+...++-+. + .-.+..+-...+|.+....-.|++|+.+|.+ .++++ .-
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 775554443221 0 0012234455677777777779999999987 34444 45
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHH--HHHHhcc--------------ccHHHHHHHHHH------
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAW--LNLAVGG--------------SKIQEAYLIFQD------ 197 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~--~~l~~~~--------------~~~~~A~~~~~~------ 197 (292)
..++.||.++.-++.+.+++...++..|+++......+- +.+..|+ ..|..+..+.+-
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 567889999999999999999999999999754333322 2222221 011111111111
Q ss_pred ----hHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh-
Q 022777 198 ----FSEKYP----MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL- 266 (292)
Q Consensus 198 ----~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~- 266 (292)
+++.-| .-|++..++...+.++|+.++|...... ++|..|--..--|++....|+. ..+.++.+.+
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 111112 1357888999999999999999988764 7899888777888888877765 4444433332
Q ss_pred --h----------CCCChhHHhHHhhHHHHHHHH
Q 022777 267 --T----------HPDHMLVKRASSGDESFERAL 288 (292)
Q Consensus 267 --~----------~P~~~~~~~~~~~~~~~~~~~ 288 (292)
+ -|-............+||+-+
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 1 244444555566777777754
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=4.1e-09 Score=95.97 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
.+++..+.=....++|...++.++.. .|...+++-..|-.+...|+.++|.......+.. ++.+..-|..+|.++
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHH
Confidence 34555555556788899888888765 4555666666666677789999999999999887 899999999999999
Q ss_pred HhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHH
Q 022777 118 MHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~ 192 (292)
...++|++|+++|++ +++.+.+..++.+..++++++-....-...++..|.....++..+...... |.+..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~--g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL--GEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHH
Confidence 999999999999998 799999999999999999999999999999999999887777766555544 4599999
Q ss_pred HHHHHhHhhC---CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 193 LIFQDFSEKY---PMTG-----LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 193 ~~~~~~~~~~---p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.+.+...+.. |+.- ........+..+.|.+++|.+.+..--..--+.....-..+.++...++. |...+.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9888876654 4322 34555666778889988888777664333333333334456778888888 999999
Q ss_pred HHHhhCCCChhH
Q 022777 263 QLKLTHPDHMLV 274 (292)
Q Consensus 263 ~~~~~~P~~~~~ 274 (292)
.++..+|++-..
T Consensus 244 ~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 244 RLLERNPDNLDY 255 (700)
T ss_pred HHHhhCchhHHH
Confidence 999999999753
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.4e-09 Score=93.12 Aligned_cols=223 Identities=17% Similarity=0.148 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
++.+.-..-+...|++++|.....+. .|.+..+++.=.-++.+.+.++.|+...+.-... .-.+ ...+-.|-|+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVIN-SFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcc-hhhHHHHHHH
Confidence 34444455677789999999888876 4566666664444456678899998554443221 1111 2226889999
Q ss_pred HhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHH-
Q 022777 118 MHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLI- 194 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~- 194 (292)
++.|+.++|++.+.. +.+.....+.|+++++.|+|++|..+|+.+.+.+-++....+. .++.. ...+...
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r---~nl~a----~~a~l~~~ 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR---ANLLA----VAAALQVQ 162 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH---HHHHH----HHHhhhHH
Confidence 999999999999985 4556688899999999999999999999998876555432221 11110 1111111
Q ss_pred HHHhHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC-------HHHHHHHHHHHHhcCCc--
Q 022777 195 FQDFSEKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNK--------DAKD-------PETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 195 ~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~-------~~~~~~l~~~~~~~g~~-- 256 (292)
..+.+...|+ +-+.+++.|.++...|+|.+|++.+++++++ +-++ ..+...++.++..+|+-
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 2333344444 5679999999999999999999999999433 2221 12456788899999998
Q ss_pred HHHHHHHHHhhCCCChh
Q 022777 257 TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~~ 273 (292)
|...+...++.+|-|.-
T Consensus 243 a~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHhcCCCch
Confidence 88888888877766653
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=4.4e-09 Score=86.22 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH---HHH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL---TQL 174 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~---~~l 174 (292)
.+..++..|..++..|++.+|+..|++ | -.+++.+.+|.++...|+++.|+..+++.++..|++.. ..+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 456677788888888888888888876 3 34567777888888888888888888888888887742 222
Q ss_pred HHHHHHHH---------hccccHHHHHHHHHHhHhhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHH
Q 022777 175 ANAWLNLA---------VGGSKIQEAYLIFQDFSEKYPMTGL-----------------ILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 175 ~~a~~~l~---------~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~ 228 (292)
..+.++.. ...+...+|+..|+.++..+|+++. --+..|..+.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 22222211 1123466788888888888888752 123457788999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHhcCCc
Q 022777 229 LLDALNKDAKDP---ETLANLVVCSLHQGKS 256 (292)
Q Consensus 229 ~~~al~~~p~~~---~~~~~l~~~~~~~g~~ 256 (292)
++.+++..|+.+ +++..++..+...|..
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999999876 4567777788888876
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.6e-08 Score=91.97 Aligned_cols=251 Identities=13% Similarity=0.014 Sum_probs=171.8
Q ss_pred hhhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCC-
Q 022777 10 LFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSP- 84 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~- 84 (292)
+|.+.+....|++++|++.. +.....++ .....-..|++++.+|++++|...+... +|.+...+..+..+....
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~D-k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILD-KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 56777788899999999994 34444555 4667778899999999999999988876 777777777777766211
Q ss_pred ----CChhHHHHHHHHHhcCCCCCcc--------------------------------HHHHHHHHHHHHhcCCHHHHHH
Q 022777 85 ----DNKESTISSLKEWLSDPAIGSN--------------------------------ATLRLIAGIIFMHEEDYNEALK 128 (292)
Q Consensus 85 ----~~~~~A~~~~~~~l~~~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~A~~ 128 (292)
++.+.-.+.|.++... .|.. |.....+-.+|....+.+--..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 2344445555555433 2321 1122222222322222111111
Q ss_pred Hhhc-----------C-------Cchh----HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccc
Q 022777 129 HTNA-----------G-------GTME----LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186 (292)
Q Consensus 129 ~~~~-----------~-------~~~~----~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~ 186 (292)
++.. + ..|. +++.+++.|-..|++++|+..+++++...|..+.+.+..+.++- ..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK--h~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK--HAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HCC
Confidence 1111 0 1122 34677999999999999999999999999999888888776544 457
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--------HHHH--HHHHHHhcCCc
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE--------TLAN--LVVCSLHQGKS 256 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~--l~~~~~~~g~~ 256 (292)
++.+|...++.+..+++.|-.+-...+..+.+.|+.++|++.+..-.+.+- ++. .||. -|.++...|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 799999999999999999988888889999999999999999987655441 221 2333 46778888887
Q ss_pred --HHHHHHHHHh
Q 022777 257 --TSRYLNQLKL 266 (292)
Q Consensus 257 --a~~~~~~~~~ 266 (292)
|.+.+..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 7666655554
No 113
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=5.2e-10 Score=93.51 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=93.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
.-|.=..+.++|.+|+..|.++++++|.++...=-.+-++... |.++.|+.-.+.++..+|....+|..||.++..+|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 3456677889999999999999999999875444444444444 45999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
++.+|+..|+++|.++|+|...+-+|..+-...+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888877655544
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=3.8e-08 Score=87.37 Aligned_cols=149 Identities=20% Similarity=0.124 Sum_probs=128.0
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
.|.-..+++-.|..++..|++++|+..++. |+++=.....+.++...|+.++|.+.+++++..+|+...+++..+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 467788999999999999999999999987 888888889999999999999999999999999999988888877
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ 253 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 253 (292)
..++. .|++++|+.++++.+...|++|..|..+|..+..+|+..+|...+-+.+...-+...+...+-......
T Consensus 382 ~all~--~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 382 QALLK--GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHh--cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 66665 456999999999999999999999999999999999999999888888777666555544444433333
No 115
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=1e-10 Score=78.47 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-Cc--HHHHHHHHHhhCC
Q 022777 204 MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG-KS--TSRYLNQLKLTHP 269 (292)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~--a~~~~~~~~~~~P 269 (292)
+++.++..+|.+++..|++++|+..|+++++++|+++.+++++|.++...| ++ |.+.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356778888888888888888888888888888888888888888888887 45 7888888887777
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=1.2e-09 Score=81.06 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILN 210 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 210 (292)
+.++.+|..+...|++++|...+++++..+|++. ...+..+.++ ...+++++|+..|++++..+|++ +.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY--YAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH--HhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3444555555555555555555555555554431 1111122221 12234555555555555544443 33455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
.+|.++.+.|++++|+..+++++...|+++.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555555443
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=1.6e-09 Score=80.36 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCc-
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD---PETLANLVVCSLHQGKS- 256 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~- 256 (292)
..|++++|...|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++...|++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 3567999999999999998876 5789999999999999999999999999998886 67899999999999987
Q ss_pred -HHHHHHHHHhhCCCChhHHhHH
Q 022777 257 -TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 257 -a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
+.++++++.+.+|+++.+....
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHHHHHCcCChhHHHHH
Confidence 8999999999999999876653
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=5e-08 Score=84.51 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=146.3
Q ss_pred HHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHH
Q 022777 49 SYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYN 124 (292)
Q Consensus 49 ~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~ 124 (292)
.-+.-|+|..|...+.+. .+....++..-+..-.+.||.+.+=.++.++.+. .++ +....+..+.+++.+|+++
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCCch
Confidence 344569999999988766 2333445555566666789999999999998876 333 4566788899999999999
Q ss_pred HHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CCcHHHHHH-HHHHHHHh-------------
Q 022777 125 EALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID--EDHTLTQLA-NAWLNLAV------------- 183 (292)
Q Consensus 125 ~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~--p~~~~~~l~-~a~~~l~~------------- 183 (292)
.|...+++ |.+++...+..++|+..|++.+...++.++.+.. .+....++- .+|..+.+
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999887 8999999999999999999999999999987753 222111111 12222211
Q ss_pred ------------------------ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 184 ------------------------GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 184 ------------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
..|..++|..+..+.++..-+.. .. .-.-...-++...=++..++.++..|++
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC--RLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH--HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 12445566666666555543322 11 1112234455555566666666666777
Q ss_pred HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 240 PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 240 ~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
|.++..||.++.+.+.+ |.++++.+++..|+..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 77777777776666666 6777776666666554
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.11 E-value=2.4e-09 Score=101.53 Aligned_cols=238 Identities=14% Similarity=0.051 Sum_probs=166.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCc-h--HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AAT-P--LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS 105 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~-~--~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~ 105 (292)
.-+++|. ..++.-..+..|.....++.|....-.. ..| . ...|..++-++...++..+|+..++.+++. +|.
T Consensus 518 AFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPk 594 (1238)
T KOG1127|consen 518 AFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPK 594 (1238)
T ss_pred HhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--Cch
Confidence 4445555 3455555566666666666665543322 111 1 223444666666778888999999999988 999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH--HHHHHH--
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT--LTQLAN-- 176 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~--~~~l~~-- 176 (292)
+...+..+|.+|...|++.-|++.|.+ |.+.-+.+..+.+...+|++.+|+..+..++..-.... ...+++
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999987 66666677777777888888888888877765321110 000000
Q ss_pred --------------------------------------------------------------------------------
Q 022777 177 -------------------------------------------------------------------------------- 176 (292)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (292)
T Consensus 675 ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~ 754 (1238)
T KOG1127|consen 675 IRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKK 754 (1238)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcc
Confidence
Q ss_pred ----------------------HHHHHH---------hc--cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 177 ----------------------AWLNLA---------VG--GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 177 ----------------------a~~~l~---------~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
-|+++. .+ +.+-..|+.++.+.+++..++-.+|+.+|++ ...|++.
T Consensus 755 ~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 755 NDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred hhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhh
Confidence 011000 01 1122357888888888888888888888888 6668888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
-|.--|-+.+..+|...-.|.|+|++.....+. |...+.++..++|.+.
T Consensus 834 ~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred hhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 888888888888888888888888877776666 8888888888888885
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=4.2e-08 Score=97.92 Aligned_cols=263 Identities=13% Similarity=0.028 Sum_probs=177.8
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCch----HHHHHHHHHHHHHhhCChhHHHHhhhhc-------CCch--HHHHHHHHHh
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDD----AVERDCLVYRSYIALGSYQLVISEIDES-------AATP--LQAVKLLALY 80 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~----~~~a~~~la~~~~~~g~~~~Al~~~~~a-------~~~~--~~a~~~la~~ 80 (292)
.++..|++++|.... +.....|.. ...+...++.++...|++++|...++++ .++. ..++..++.+
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 456789999999883 333322221 1234566788899999999999888765 2222 2345567778
Q ss_pred hcCCCChhHHHHHHHHHhcC----CC--CCccHHHHHHHHHHHHhcCCHHHHHHHhhcC----------CchhHHHHHHH
Q 022777 81 LSSPDNKESTISSLKEWLSD----PA--IGSNATLRLIAGIIFMHEEDYNEALKHTNAG----------GTMELHALNVQ 144 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~----~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~a~ 144 (292)
+...|+.+.|...+.+.+.. +. .|.....+..+|.++...|++++|...+++. ....+...++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 78889999999988887653 10 1212334567889999999999999988861 12334556788
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCc---HH--HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH----HHHHHHHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDH---TL--TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG----LILNGKAVC 215 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~---~~--~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~ 215 (292)
++...|++++|...++++....+.. .. ..............|+.+.|...+.......+... ..+..+|.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 9999999999999999997753221 10 11100001111124668888888777554322222 225678999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 216 CMHMGNFDEAEGLLLDALNKDA------KDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+...|++++|+..+++++.... ....++..+|.++...|+. |...+.++++.....-.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r~f 770 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHF 770 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhhhH
Confidence 9999999999999999987621 2234567788899999998 899999998876555544333
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=3.7e-09 Score=100.26 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=158.3
Q ss_pred hhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 56 YQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 56 ~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
...|+..+-++ ++....++.-|+.+|+.-.|...|...|.++.+. +|.+.++.-..+..|....+++.|..++-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45566666555 6666778888999988766788899999999998 999999999999999999999999988654
Q ss_pred -C------CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC
Q 022777 133 -G------GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT 205 (292)
Q Consensus 133 -~------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~ 205 (292)
. .-...+..+|-.|...++.-.|+..++.+++.+|.+...+.+++-+|.. .|++.-|+..|.++....|.+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~--sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE--SGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh--cCceehHHHhhhhhHhcCcHh
Confidence 1 1123455688889999999999999999999999998777777766655 466999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
....+-.+.+...+|++.+|+..++.++........++..++.++..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999998876666666666655443
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.09 E-value=4.1e-10 Score=74.58 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=46.7
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
..|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+||
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 346688888888888888888888888888888888888888888888888888875
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=3.7e-08 Score=82.87 Aligned_cols=159 Identities=9% Similarity=0.080 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchh---HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH---HH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTME---LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT---QL 174 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~---~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~---~l 174 (292)
.+...+..|..++..|++++|++.|++ |.++. +.+.+|.++.+.+++++|+..+++.++.+|+++.. .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344455556666666666666666655 33322 23555666666666666666666666666655311 11
Q ss_pred HHHHHHHHhc----------------cccHHHHHHHHHHhHhhCCCCHH-----------------HHHHHHHHHHhcCC
Q 022777 175 ANAWLNLAVG----------------GSKIQEAYLIFQDFSEKYPMTGL-----------------ILNGKAVCCMHMGN 221 (292)
Q Consensus 175 ~~a~~~l~~~----------------~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~g~ 221 (292)
..+.++...+ .....+|+..|+++++.+|++.- --+..|..|.+.|+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111110000 01134566666666666666541 11245667888888
Q ss_pred HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCc--HHHHHHHH
Q 022777 222 FDEAEGLLLDALNKDAKD---PETLANLVVCSLHQGKS--TSRYLNQL 264 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~--a~~~~~~~ 264 (292)
|..|+.-++.+++..|+- +++++.++..|...|.. +.+..+.+
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 888888888888887775 45677777788888876 55555433
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=8.7e-10 Score=73.01 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
.+|..++..|++++|+..|+++++.+|+++++++.+|.++...|++ |..+++++++.+|+||
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999998 8899999999999987
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=3.2e-09 Score=84.34 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=68.0
Q ss_pred cccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------hcC
Q 022777 185 GSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL-------HQG 254 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-------~~g 254 (292)
.+++++|+..|++++...|++ +.++.++|.++...|++++|+..+++++.++|.+...+.+++.++. ..|
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 456777777777777665543 3477888888888888888888888888888888888888877777 445
Q ss_pred Cc---------HHHHHHHHHhhCCCC-hhHHhHHhhHHHH
Q 022777 255 KS---------TSRYLNQLKLTHPDH-MLVKRASSGDESF 284 (292)
Q Consensus 255 ~~---------a~~~~~~~~~~~P~~-~~~~~~~~~~~~~ 284 (292)
++ +..+++++...+|++ +.+.....+.+.|
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 53 345555666666654 3444445544444
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=9.6e-09 Score=94.82 Aligned_cols=185 Identities=17% Similarity=0.152 Sum_probs=150.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHH---------
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQL--------- 174 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l--------- 174 (292)
|.-......+|.+++..|=...|+.++++ ++.+-....||...|+..+|..+.++-++.+|++.+..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er---lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER---LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh---HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 44456667899999999999999999997 344556778999999999999999999997777732111
Q ss_pred --HHHH-----------HHH---HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 175 --ANAW-----------LNL---AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 175 --~~a~-----------~~l---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
..+| .++ ....++|.++...++..++.+|-.+..|+++|.+..+.++++.|.+.|...+.++|+
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 1111 110 012367999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhH----HhHHhhHHHHHHHHhhc
Q 022777 239 DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLV----KRASSGDESFERALQSV 291 (292)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~----~~~~~~~~~~~~~~~~~ 291 (292)
+.++|.|++..|...|+. +.+.++.+++.+-+|+.+ .-+...-|.||++.+-|
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999999999876 999999999999777653 33566778888877644
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=4.7e-08 Score=82.19 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=91.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHH---HHHHHHHHhcCCHHHHHHHhhc-----CCc---hhHHHHHHHH
Q 022777 77 LALYLSSPDNKESTISSLKEWLSDPAIGSNATLR---LIAGIIFMHEEDYNEALKHTNA-----GGT---MELHALNVQI 145 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~-----~~~---~~~~~~~a~~ 145 (292)
.|.-....|++++|+..|++++.. .|..+.+. +.+|.++.+.|++++|+..+++ |++ +.+.+.+|.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 333333345555555555555544 44433332 4555555555555555555544 222 2234444443
Q ss_pred HHhCC------------------ChHHHHHHHHHHHhhCCCcHHHHHHHHH---------------HHHHhccccHHHHH
Q 022777 146 FLKMH------------------RSDYAERQLRAMQQIDEDHTLTQLANAW---------------LNLAVGGSKIQEAY 192 (292)
Q Consensus 146 ~~~~~------------------~~~~A~~~l~~~~~~~p~~~~~~l~~a~---------------~~l~~~~~~~~~A~ 192 (292)
+...+ ...+|...++++++..|++.....+.-. ..++...|+|.-|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 32221 1246778888888888888422211110 01123457799999
Q ss_pred HHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 193 LIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 193 ~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.-++.+++..|++ ++++..++..+..+|..++|......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999886 47899999999999999999987664
No 128
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.04 E-value=1.1e-07 Score=78.44 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH---HHH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL---TQL 174 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~---~~l 174 (292)
.+..++.-|...++.|++++|.+.|+. |-..++.+.++..+.+.+++++|+..+++.++..|.|.. ...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 467788899999999999999999987 345678899999999999999999999999999988852 222
Q ss_pred HHHHHHHH------hccccHHHHHHHHHHhHhhCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 175 ANAWLNLA------VGGSKIQEAYLIFQDFSEKYPMTG-----------------LILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 175 ~~a~~~l~------~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
..+..++. .......+|+..|+.++...|++. .-=...|..|.+.|.+-.|+.-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 23333221 122346788999999999999975 1223457789999999999999999
Q ss_pred HHhhCCCC---HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 232 ALNKDAKD---PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 232 al~~~p~~---~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+++..|+- .+++..+...|..+|.. |.+..+-+....|+++|..+-
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDA 243 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhh
Confidence 99987764 35678888889999976 777777777778999887664
No 129
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.4e-09 Score=86.45 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccccHHHHHHHHHHhHhhCCCCHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV-GGSKIQEAYLIFQDFSEKYPMTGLILNG 211 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 211 (292)
|++.+.+..+|.+|..+|+++.|...|+++.++.|+++....+.+-+..+. +.....++...|++++..+|.++.+++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 777788888888888888888888888888888887765544444433333 2344677778888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
+|..+++.|++.+|....+..+...|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888888888888888888877666543
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.03 E-value=6.8e-09 Score=72.53 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH 218 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 218 (292)
+..+|.++...|++++|+..++++++..|.+.......+.++... +++++|...|++++...|.++.++..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 344555555555555555555555555555433333333332222 335555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 022777 219 MGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p 237 (292)
.|++++|...+.+++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555555544
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.02 E-value=1.3e-08 Score=86.36 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCc--
Q 022777 185 GSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD---PETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~-- 256 (292)
.+++++|+..|+.++..+|++ +.+++++|.++...|++++|+..|++++...|++ +++++.+|.++...|+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 356888888888888888887 4688888888888888888888888888877774 67788888888888877
Q ss_pred HHHHHHHHHhhCCCChhHHhH
Q 022777 257 TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|.+.++++.+.+|+++....-
T Consensus 236 A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHHHHCcCCHHHHHH
Confidence 888888888888888765543
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.6e-08 Score=83.86 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG---NFDEAEG 227 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~ 227 (292)
.++.-..-++.-++.+|++...+..++-+++.. ++++.|...|++++++.|+|++++..+|.+++.+. ...++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 356666778888889999998888888777765 46999999999999999999999999999988754 5678999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCC-hh
Q 022777 228 LLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDH-ML 273 (292)
Q Consensus 228 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~-~~ 273 (292)
.|++++.++|+|+.+++-|+..+..+|++ |...++.+++..|.+ |.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999999999 899999999876554 44
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=2.3e-08 Score=77.41 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=80.6
Q ss_pred HhhCChhHHHHhhhhc---CCch---HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc---HHHHHHHHHHHHhcC
Q 022777 51 IALGSYQLVISEIDES---AATP---LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN---ATLRLIAGIIFMHEE 121 (292)
Q Consensus 51 ~~~g~~~~Al~~~~~a---~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~---~~~~~~la~~~~~~g 121 (292)
...|+...+...++.. .|.. ..+.+.+|.++...|++++|+..|+.++.. .|+. +.+.+.+|.+++.+|
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~--~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN--APDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHHcC
Confidence 3466666665545443 2222 456677888888888888888888888887 4443 456778888888888
Q ss_pred CHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 122 DYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 122 ~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
++++|+..++. +..+.+...+|.++..+|++++|...|++++
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888876 2334567778888888888888888888763
No 134
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.98 E-value=2e-09 Score=71.93 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
.|++++|+..|++++..+|+++.++..+|.|+++.|++++|...+++++..+|+++.++.-++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4679999999999999999999999999999999999999999999999999998887766554
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=5.5e-08 Score=79.72 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCc-hHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc---c
Q 022777 36 PDDAVERDCLVYRSYIALGSYQLVISEIDES-----AAT-PLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS---N 106 (292)
Q Consensus 36 p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~---~ 106 (292)
|+...+..+..|..++..|++.+|+..|++. ..+ ...+.+.++..+...|+++.|+..+++.+.. .|+ -
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~ 78 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKA 78 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcch
Confidence 3444566677777777777777777777654 122 2556667777666667777777777777665 444 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHH------------
Q 022777 107 ATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQL------------ 174 (292)
Q Consensus 107 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l------------ 174 (292)
+.+++.+|.+++.+.+- .+ .....++...+|...++.+++..|++....-
T Consensus 79 ~~A~Y~~g~~~~~~~~~--~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPG--IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHH--HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCcc--ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 45666666655544111 00 0011233445777888888888888731111
Q ss_pred HH---HHHHHHhccccHHHHHHHHHHhHhhCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 022777 175 AN---AWLNLAVGGSKIQEAYLIFQDFSEKYPMTG---LILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 175 ~~---a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~ 227 (292)
+. .-..++...|.+..|+..++.+++..|+++ +++..++.++.++|..+.|..
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 10 001223356789999999999999999976 588899999999999996553
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=4.2e-08 Score=75.95 Aligned_cols=112 Identities=18% Similarity=0.114 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHhhc-----CCc---hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhcccc
Q 022777 119 HEEDYNEALKHTNA-----GGT---MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSK 187 (292)
Q Consensus 119 ~~g~~~~A~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~ 187 (292)
..|++..+...++. |++ ..+.+.++.+++..|++++|...|+.++...|++. ..++.++.+++ ..|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~--~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL--QQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH--HcCC
Confidence 45666655554444 333 34566677788888888888888888887766653 23333444444 3456
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (292)
+++|+..++.+ ...+..+.++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888663 3445566788888999999999999999998874
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=1.7e-08 Score=80.47 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC------
Q 022777 185 GSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK------ 255 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 255 (292)
.|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+++++...|+++..+.++|.++...|+
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence 356777777777777655442 35777778888888888888888888888888777777777777776665
Q ss_pred --------c--HHHHHHHHHhhCCCCh
Q 022777 256 --------S--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 256 --------~--a~~~~~~~~~~~P~~~ 272 (292)
+ +.++++++.+.+|++.
T Consensus 128 ~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 128 DQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 2 6778888888888884
No 138
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.95 E-value=6.1e-08 Score=89.95 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=109.7
Q ss_pred CCchhHHH--HHHHHHHhCCC---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc------cccHHHHHHHHHHhHhh
Q 022777 133 GGTMELHA--LNVQIFLKMHR---SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG------GSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 133 ~~~~~~~~--~~a~~~~~~~~---~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~------~~~~~~A~~~~~~~~~~ 201 (292)
|.+++++- +.|.-+...+. ...|+.+|+++++.+|+.....-.+++++.... ..+...+....++++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 56666644 45555555444 778999999999999999755544444433211 12356677777776553
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 202 --YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 202 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|++ |...++++..++|.+|.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 777889999999999999999999999999999999 578999999999999998 99999999999999984
No 139
>PRK15331 chaperone protein SicA; Provisional
Probab=98.95 E-value=1.9e-08 Score=77.68 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.|++++|..+|+-+.-.+|.++++++++|.|+..+|+|++|+..|..+..++++||...+..|.|+...|+. |...|+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888888888888888888888888888888888888888888888888888887 888887
Q ss_pred HHHhhCCCChhHHh
Q 022777 263 QLKLTHPDHMLVKR 276 (292)
Q Consensus 263 ~~~~~~P~~~~~~~ 276 (292)
.+.. .|.++.++.
T Consensus 130 ~a~~-~~~~~~l~~ 142 (165)
T PRK15331 130 LVNE-RTEDESLRA 142 (165)
T ss_pred HHHh-CcchHHHHH
Confidence 7775 566665544
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=3.6e-09 Score=73.90 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHhcCCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGS--NATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAER 157 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~ 157 (292)
+|+++.|+..+++++.. .|. +..+++.+|.++++.|++++|+.++++ +.++.....+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999988 774 566777889999999999999999976 5667888888999999999999999
Q ss_pred HHHHH
Q 022777 158 QLRAM 162 (292)
Q Consensus 158 ~l~~~ 162 (292)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.94 E-value=2e-08 Score=70.04 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=80.5
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++ +.++++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999987 889999
Q ss_pred HHHhhCCC
Q 022777 263 QLKLTHPD 270 (292)
Q Consensus 263 ~~~~~~P~ 270 (292)
++.+.+|+
T Consensus 93 ~~~~~~~~ 100 (100)
T cd00189 93 KALELDPN 100 (100)
T ss_pred HHHccCCC
Confidence 99888774
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=1.3e-08 Score=68.13 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=50.9
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG-NFDEAEGLLLDALNKDA 237 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 237 (292)
..+++++|+..|+++++.+|+++.+++++|.++..+| ++.+|++.++++++++|
T Consensus 15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567999999999999999999999999999999999 79999999999999998
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.90 E-value=8.8e-07 Score=76.42 Aligned_cols=211 Identities=11% Similarity=0.089 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc-------CCch--HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES-------AATP--LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLR 110 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a-------~~~~--~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~ 110 (292)
.+.+...|.+|-..|++++|...|.++ ..+. ..++...+.++.. .++++|+..|+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A------------- 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA------------- 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH-------------
Confidence 334444567777788888887777654 1111 2223333334332 2444444444443
Q ss_pred HHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhC-CChHHHHHHHHHHHhhC--CCcH--HHHHHHHHHHHHhcc
Q 022777 111 LIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKM-HRSDYAERQLRAMQQID--EDHT--LTQLANAWLNLAVGG 185 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~l~~~~~~~--p~~~--~~~l~~a~~~l~~~~ 185 (292)
..+|...|++..|-..+. .+|.+|... |++++|+..|+++.... .+.. ......-...+....
T Consensus 101 ---~~~y~~~G~~~~aA~~~~---------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 ---IEIYREAGRFSQAAKCLK---------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp ---HHHHHHCT-HHHHHHHHH---------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHhcCcHHHHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 345566666666655554 478888888 88999999999988862 1221 111111112233345
Q ss_pred ccHHHHHHHHHHhHhhCCCC------H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---H--HHHHHHHHHHhc
Q 022777 186 SKIQEAYLIFQDFSEKYPMT------G-LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP---E--TLANLVVCSLHQ 253 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~------~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~--~~~~l~~~~~~~ 253 (292)
++|++|+.+|+++....-++ + ..++..+.|++..|++..|...+++....+|... + +...+...+. .
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-E 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-h
Confidence 67999999999987653221 2 4667788899999999999999999999988543 2 2333333343 3
Q ss_pred CCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 254 GKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 254 g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|+. ..+....-..+.|-++|-..+
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred CCHHHHHHHHHHHcccCccHHHHHHH
Confidence 433 444445555567777775554
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=4.4e-09 Score=73.43 Aligned_cols=75 Identities=27% Similarity=0.410 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
++++|+..|+++++..|. ++.+++.+|.|++++|++++|+..+++ ...+|.+++.++.+|.++..+|++ |++.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 344444444444444442 233344444444444444444444444 444444444444444444444444 444443
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=8e-08 Score=76.63 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CC---chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GG---TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQL 174 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l 174 (292)
.|.....++.+|.++...|++++|+.+|++ ++ ...++..+|.++...|++++|+..++++++..|++.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 344556666666666666777766666665 11 1234555555666666666666666655555555543333
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 175 ANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 175 ~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
..+.++...+ +...+...+.++. ..+.+|++.+++++..+|++.
T Consensus 111 ~lg~~~~~~g--~~~~a~~~~~~A~--------------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRG--EKAEEAGDQDEAE--------------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcC--ChHhHhhCHHHHH--------------------HHHHHHHHHHHHHHhhCchhH
Confidence 3333332221 1222221111111 126888899999999999874
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2.8e-06 Score=75.50 Aligned_cols=270 Identities=11% Similarity=0.027 Sum_probs=191.7
Q ss_pred hhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHHHH
Q 022777 18 YLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTISSL 94 (292)
Q Consensus 18 ~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~~~ 94 (292)
..|+...|-..++ |.+-+|+ ..++......=++-+..+.|...+++- -.|...++...+.+-...|+..-+..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~--eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD--EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4688888888854 8888886 366777777777778888888888776 5677888888888877778877777777
Q ss_pred HHHhcCCC-CCccHHHHHHHHHHHHhcCCHHHHHHHhh---------------------------------------c--
Q 022777 95 KEWLSDPA-IGSNATLRLIAGIIFMHEEDYNEALKHTN---------------------------------------A-- 132 (292)
Q Consensus 95 ~~~l~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------------------------~-- 132 (292)
+.++..-. +-.+....+..|.--.+++.++.|.-+|. +
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 77765410 11122333334443344445554444443 0
Q ss_pred --------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH----HHHHHHHHHH----hccccHHHHHHHHH
Q 022777 133 --------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT----QLANAWLNLA----VGGSKIQEAYLIFQ 196 (292)
Q Consensus 133 --------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~----~l~~a~~~l~----~~~~~~~~A~~~~~ 196 (292)
|.+-+++.....+-...|+.+.-...|++++..-|..... ++..-|++.. ...++.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455667777778888899999999999999865544222 2222333221 12367899999999
Q ss_pred HhHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 197 DFSEKYPMT----GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 197 ~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
.++++-|.. +.+|...|....+..+...|.+.+-.|+-+-|.+.... ....+-.+.+++ +.+++++.++..|.
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK-GYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH-HHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 999998873 56888889999999999999999999999999976443 445556677776 99999999999999
Q ss_pred Chh----HHhHHhhHHHHHHHHhh
Q 022777 271 HML----VKRASSGDESFERALQS 290 (292)
Q Consensus 271 ~~~----~~~~~~~~~~~~~~~~~ 290 (292)
+.. ...+-..+++.|++-+=
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHH
Confidence 974 45567777888877553
No 147
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=5.1e-08 Score=81.65 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=135.3
Q ss_pred HHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 022777 50 YIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEA 126 (292)
Q Consensus 50 ~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A 126 (292)
+++..++.+|+..+..- .|.+...+..|+.+|....++..|..+|+++-.. .|....+.+..|+.+.+.+.+.+|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 47778888888877643 5556777888888888778899999999988877 788888889999999999999999
Q ss_pred HHHhhc-CCchh----HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 127 LKHTNA-GGTME----LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 127 ~~~~~~-~~~~~----~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
+.+... .++++ +..+.+.+....+++..+..++++...-+..+. .+-.+ +.+ ...|+++.|..-|+.+++.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~--~in~g-Cll-ykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADG--QINLG-CLL-YKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccch--hccch-hee-eccccHHHHHHHHHHHHhh
Confidence 998877 34343 344556677788888888777765532222111 11111 122 2357799999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
..-+|.+-++++.+..+.|+++.|.++..++++.
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 8888888889999999999999999988888765
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=4.1e-07 Score=76.31 Aligned_cols=179 Identities=12% Similarity=0.021 Sum_probs=104.0
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCch-HHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATP-LQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~-~~a~~~la~~~~~~~~~~~A 90 (292)
......+|..||+..+ ..+.+|. +..++..+|-||....++..|-..+++. ..|. ....+--+..+.+.+.+..|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 3466778999998844 6667886 3677888899999999999988888876 3343 44433444444556677777
Q ss_pred HHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc-C--CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 91 ISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA-G--GTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
+.+...+... |. .......-+.+....+++..+...+++ | +........|-+..+.|++++|.+-+..+++..
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 7766555332 22 222333344445556666666555555 3 333445555666666666666666666666654
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFS 199 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~ 199 (292)
.-.+.+.+..+.+... +++++.|+....+++
T Consensus 175 GyqpllAYniALaHy~--~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYS--SRQYASALKHISEII 205 (459)
T ss_pred CCCchhHHHHHHHHHh--hhhHHHHHHHHHHHH
Confidence 4443332222222222 234666665555443
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=98.85 E-value=1.3e-07 Score=84.29 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=85.6
Q ss_pred HHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHh---c----cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH
Q 022777 153 DYAERQLRAMQ---QIDEDHTLTQLANAWLNLAV---G----GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 153 ~~A~~~l~~~~---~~~p~~~~~~l~~a~~~l~~---~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 222 (292)
+.|+.++.+++ .++|+.....-..+|+++.. + .....+|...-+++++.+|.|+.++..+|.++...+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 44667777777 66777665544445554421 1 23456677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 223 DEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 223 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+.|...|++|+.++|+.+.+++..|.+....|+. +.+.++++++++|....+.-+
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 7777777777777777777777777777777776 777777777777776654443
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=2e-07 Score=79.10 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=86.3
Q ss_pred hhHHHHHHHHH-HhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHH
Q 022777 136 MELHALNVQIF-LKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLI 208 (292)
Q Consensus 136 ~~~~~~~a~~~-~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~ 208 (292)
....+..+..+ ...|++++|+..|+.+++.+|++. ...+.++.+++. .|++++|+..|++++..+|++ +++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~--~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN--KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 35566666654 567999999999999999999984 233444444443 467999999999999988884 689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 209 LNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999999987543
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.9e-08 Score=83.80 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc---HHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS---TSRYL 261 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---a~~~~ 261 (292)
.++|.+|+..-.+++...|+|+-+++..|.++..+|+++.|+..|+++++++|+|..+...+..+-.+...+ ..++|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999999999999998887665544 45667
Q ss_pred HHHHhhC
Q 022777 262 NQLKLTH 268 (292)
Q Consensus 262 ~~~~~~~ 268 (292)
.++...-
T Consensus 350 ~~mF~k~ 356 (397)
T KOG0543|consen 350 ANMFAKL 356 (397)
T ss_pred HHHhhcc
Confidence 6665543
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.84 E-value=2.2e-07 Score=86.31 Aligned_cols=136 Identities=12% Similarity=-0.048 Sum_probs=92.8
Q ss_pred CccHHHH--HHHHHHHHhcCC---HHHHHHHhhc-----CCchhHHHHHHHHHHhC--------CChHHHHHHHHHHHhh
Q 022777 104 GSNATLR--LIAGIIFMHEED---YNEALKHTNA-----GGTMELHALNVQIFLKM--------HRSDYAERQLRAMQQI 165 (292)
Q Consensus 104 p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~-----~~~~~~~~~~a~~~~~~--------~~~~~A~~~l~~~~~~ 165 (292)
|.++.++ +..|.-++..++ ...|+.+|++ |++..++..++.++... ++...+....+++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 4444443 445555554443 5566666665 55555555555444332 1234555666665554
Q ss_pred --CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 166 --DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 166 --~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
+|..+....+.+...+ ..|++++|...+++++.+.| +..+|..+|.++...|+.++|+..|++|+.++|.++..
T Consensus 414 ~~~~~~~~~~~ala~~~~--~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQAL--VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 4444444444444443 35779999999999999999 58899999999999999999999999999999999863
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1e-08 Score=68.39 Aligned_cols=64 Identities=30% Similarity=0.468 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
+++.|++++|+..|++++..+|+++++++.++.++...|++ |...++++...+|++|.+..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46889999999999999999999999999999999999998 99999999999999998877653
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.1e-06 Score=71.04 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=158.9
Q ss_pred hhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCchHHHHHHHHHhhcCC
Q 022777 10 LFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-----AATPLQAVKLLALYLSSP 84 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~~~a~~~la~~~~~~ 84 (292)
.|..+.+...|+|...|.....-+ .|. ..+...++.....-++.++-+..+..- ...+...+..-+.++...
T Consensus 45 ~y~~raylAlg~~~~~~~eI~~~~-~~~--lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEIKEGK-ATP--LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHHHccccccccccccccc-CCh--HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 567788888999988887722222 232 344444555544445545444444322 334444555666778888
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---CCchhHHHHHHHHHHh----CCChHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---GGTMELHALNVQIFLK----MHRSDYAER 157 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~~~~a~~~~~----~~~~~~A~~ 157 (292)
|+++.|...... -++.++.-.-..++.++.+.+-|.+.+++ .++......+|+.+++ .+++.+|.-
T Consensus 122 ~~~deAl~~~~~-------~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 122 GDFDEALKALHL-------GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred CChHHHHHHHhc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 999999777654 33577777788999999999999999987 3444455556655443 567889999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhC
Q 022777 158 QLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAE-GLLLDALNKD 236 (292)
Q Consensus 158 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 236 (292)
+|+++.+..|..+....+++-+.+.+ ++|++|..+++.++..++.+|+.+.++-.+-...|.-.++. +.+.+....+
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999997666666666666666654 67999999999999999999999999999999999988866 5666666678
Q ss_pred CCCHHH
Q 022777 237 AKDPET 242 (292)
Q Consensus 237 p~~~~~ 242 (292)
|.++-+
T Consensus 273 p~h~~v 278 (299)
T KOG3081|consen 273 PEHPFV 278 (299)
T ss_pred CcchHH
Confidence 888744
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=3.5e-08 Score=66.79 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
..+++++|+.++++++..+|+++.++..+|.++..+|++.+|...|+++++..|+++++....+
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999988765544
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.8e-07 Score=83.42 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHH
Q 022777 113 AGIIFMHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 113 la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~ 190 (292)
+-.++...++++.|+..|++ ..+|+....++.++...++..+|++.+.+++..+|.+..+...++.+.+. +++++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~--k~~~~l 252 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS--KKKYEL 252 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCCHHH
Confidence 33455667888899888887 56677888888888888888889999999988888886655555655443 456889
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
|+.+.++++...|++...|..|+.+|...|++++|+..+..
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999888999888899999999999999998866653
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.76 E-value=8.1e-06 Score=66.02 Aligned_cols=214 Identities=21% Similarity=0.202 Sum_probs=163.6
Q ss_pred hCChhHHHHhhhhc---CCc--hHHHHHHHHHhhcCCCChhHHHHHHHHHhc--CCCCCccHHHHHHHHHHHHhcCCHHH
Q 022777 53 LGSYQLVISEIDES---AAT--PLQAVKLLALYLSSPDNKESTISSLKEWLS--DPAIGSNATLRLIAGIIFMHEEDYNE 125 (292)
Q Consensus 53 ~g~~~~Al~~~~~a---~~~--~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~p~~~~~~~~la~~~~~~g~~~~ 125 (292)
.+.+..+...+... .+. ........+..+...+++..++..+...+. . .+.....+...+..+...+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL--LPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHHHhhHHH
Confidence 35555555555544 222 234555666667777889988888888875 4 68888999999999999999999
Q ss_pred HHHHhhc-----CCchhHHHHHHH-HHHhCCChHHHHHHHHHHHhhCCC--c-HHHHHHHHHHHHHhccccHHHHHHHHH
Q 022777 126 ALKHTNA-----GGTMELHALNVQ-IFLKMHRSDYAERQLRAMQQIDED--H-TLTQLANAWLNLAVGGSKIQEAYLIFQ 196 (292)
Q Consensus 126 A~~~~~~-----~~~~~~~~~~a~-~~~~~~~~~~A~~~l~~~~~~~p~--~-~~~~l~~a~~~l~~~~~~~~~A~~~~~ 196 (292)
++..+.. +........... ++...|+++.|...+.+++...|. . ........ ......+++++|+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG--ALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh--hHHHHhcCHHHHHHHHH
Confidence 9999987 222234445555 899999999999999999887763 2 11111111 11223467999999999
Q ss_pred HhHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 197 DFSEKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 197 ~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
+++...|. ....+..++.++...+++.+|...+..++...|.....+..++..+...+.. +...+.+.....|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999 7899999999999999999999999999999999777788888877755644 88888899888887
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=6.5e-07 Score=71.04 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
++..+|.++...|++++|+..+++++...|++. ......+.++ ...|++++|+..+++++...|.++..+..+|.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~--~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH--TSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344555555566666666666666655544432 1111222222 22345666666666666666666666666666
Q ss_pred HHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q 022777 215 CCM-------HMGNFD-------EAEGLLLDALNKDAKDP 240 (292)
Q Consensus 215 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 240 (292)
++. ..|+++ +|+..+++++..+|++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 666 666655 66677777888888754
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=5.5e-06 Score=78.55 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=159.2
Q ss_pred hhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
|-.....+++.+|+...+ +.+..|+ ..-+....|.+++++|+.++|...++.. .+.+..++..+..+|..+|..+
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 345577899999999954 8888888 5677888899999999999999888755 3445677888889999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHH----HHHHHhhc-CCchhH-HHHHHHHHHhCCChHH--------
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYN----EALKHTNA-GGTMEL-HALNVQIFLKMHRSDY-------- 154 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~----~A~~~~~~-~~~~~~-~~~~a~~~~~~~~~~~-------- 154 (292)
+|+..|+++... .|+ .+....+=.+|.+.+.|. -|++.|.. |..+-. |.....+......++.
T Consensus 95 ~~~~~Ye~~~~~--~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999988 898 666666667788887765 46666665 444332 2222233333333333
Q ss_pred -HHHHHHHHHhhCCCcHHHHHHHHH--HHHHhccccHHHHHHHH-HHhHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022777 155 -AERQLRAMQQIDEDHTLTQLANAW--LNLAVGGSKIQEAYLIF-QDFSEK-YPMTGLILNGKAVCCMHMGNFDEAEGLL 229 (292)
Q Consensus 155 -A~~~l~~~~~~~p~~~~~~l~~a~--~~l~~~~~~~~~A~~~~-~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (292)
|....+..++.. + .....+++. ..+....+++++|.+++ ....+. .+.++...+..+..+...++|.+-.+..
T Consensus 172 LA~~m~~~~l~~~-g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 172 LAEKMVQKLLEKK-G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHhccC-C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 444555555544 2 222222322 23344567899999999 445554 4456666677788999999999999999
Q ss_pred HHHHhhCCCCHH
Q 022777 230 LDALNKDAKDPE 241 (292)
Q Consensus 230 ~~al~~~p~~~~ 241 (292)
.+++..+|+|..
T Consensus 250 ~~Ll~k~~Ddy~ 261 (932)
T KOG2053|consen 250 SRLLEKGNDDYK 261 (932)
T ss_pred HHHHHhCCcchH
Confidence 999999999833
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=98.75 E-value=3.8e-07 Score=70.56 Aligned_cols=107 Identities=14% Similarity=-0.041 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKA 213 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 213 (292)
+..+..+..|.-+..+|++++|+..|+-+...+|.+....++++-++ +..++|++|+..|..+....++||...+..|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~--Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC--QLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 45667788888889999999999999999999998887666666544 3446799999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.|++.+|+.++|+.-|+.++. .|.+..+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 999999999999999999998 57665544
No 161
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=3.1e-06 Score=83.44 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=169.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCch----HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCC
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATP----LQAVKLLALYLSSPDNKESTISSLKEWLSDPA 102 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 102 (292)
+...+|++ .-.++.....++.+++.+.|.+..+++ ++.. ...|..+-.+...-|.-+.-..+|+++...
T Consensus 1450 lvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-- 1526 (1710)
T KOG1070|consen 1450 LVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-- 1526 (1710)
T ss_pred HHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--
Confidence 44457773 455666667788999999999988877 2222 122333333333335556667788888765
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
-+...++..|..+|...+++++|.++|+. ......|...+..++.+++-++|..++.++++.-|......+..-
T Consensus 1527 -cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 -CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred -cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 44467888899999999999999999987 567889999999999999999999999999999998655555555
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhc
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK--DAKDPETLANLVVCSLHQ 253 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 253 (292)
++.|....|+-+.++.+|..++..+|.-.++|+-+...-++.|+.+-.+..|++++.+ .|......|..=.-|.+.
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 5666667788999999999999999999999999999999999999999999999876 466666666655445443
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.70 E-value=7.4e-07 Score=79.58 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=99.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
+..++...++++.|+.+++++.+.+|+.. ...+.+++. .++-.+|+.++.+++...|.+..++...+..++..++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~---~~LA~v~l~--~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVA---VLLARVYLL--MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHH---HHHHHHHHh--cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34556678999999999999999998743 223333443 3457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
++.|+...++++...|++...|+.|+.+|...|++ |.-.++
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999998 655444
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=8.8e-08 Score=64.76 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhh
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSG 280 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~ 280 (292)
+..++.+.+++++|++.+++++..+|+++..+..+|.++...|++ |.+.++++++..|+++.+..+..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 356889999999999999999999999999999999999999998 999999999999999988776543
No 164
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.2e-06 Score=67.81 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh----CCCcHHHHHHHHH
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI----DEDHTLTQLANAW 178 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~----~p~~~~~~l~~a~ 178 (292)
+-+.++.++...|.|.-.+..+.+ +..|.....++.+..+.|+.+.|...++++.+. +............
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566677777777766666654 345556667777777777777777777755432 2111111112222
Q ss_pred HHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q 022777 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP---ETLANLVVCSL 251 (292)
Q Consensus 179 ~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~ 251 (292)
..+..+..++.+|...|.+++..+|.++.+.++.|.|++-.|+..+|++.++.++.+.|... ...+|+-..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 23344667799999999999999999999999999999999999999999999999999864 34567766553
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.66 E-value=1.6e-06 Score=74.83 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=80.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhC--CCcH--HHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhCC--CC----HHHHH
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQID--EDHT--LTQLANAWLNLAVGG-SKIQEAYLIFQDFSEKYP--MT----GLILN 210 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~--p~~~--~~~l~~a~~~l~~~~-~~~~~A~~~~~~~~~~~p--~~----~~~~~ 210 (292)
.+.++.+. ++++|+..+++++.+. .+.+ ......-...++... +++++|+..|+++++... ++ ...+.
T Consensus 81 Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 81 AANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 33444333 6666666666666541 1111 000111111233344 689999999999876521 12 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKD----P---ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~---~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.+|.++.+.|+|++|+..|+++....-++ . +.++..+.|++..|++ |.+.+++....+|.-..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999998753221 2 2345667788899988 89999999888885543
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.3e-07 Score=79.97 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=86.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
..|..|++.|+|..|...|++++..-+... +. .-++. +++.. --...+++++.|+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~-------------~~-~~ee~----~~~~~---~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR-------------SF-DEEEQ----KKAEA---LKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc-------------cC-CHHHH----HHHHH---HHHHHhhHHHHHHHhhh
Confidence 346677777777777777777765522110 00 00000 00000 01246889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
+|.+|+....++|..+|+|..++|..|.++...|.+ |+..|++++++.|+|..+..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999998 99999999999999976655
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.65 E-value=4.9e-05 Score=66.25 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc-CCchHHHHHHHHHhh--cCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES-AATPLQAVKLLALYL--SSPDNKESTISSLKEWLSDPAIGSNATLRLIAGII 116 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~~~a~~~la~~~--~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~ 116 (292)
+-.|+.-+++-+.-|++++|..-|+.- +.|...-+.+-+.++ ...|+.+.|+.+.+++.+. -|.-+.+....=..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHH
Confidence 455666677888889999999999865 666655444333332 3678999999999998888 78888887777778
Q ss_pred HHhcCCHHHHHHHhhc----------------------------------------------CCchhHHHHHHHHHHhCC
Q 022777 117 FMHEEDYNEALKHTNA----------------------------------------------GGTMELHALNVQIFLKMH 150 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~----------------------------------------------~~~~~~~~~~a~~~~~~~ 150 (292)
.+..|+++.|++.++. |+...+...-+..++..|
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 8899999999999883 122233444567889999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLL 230 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (292)
+..++-++++.+.+..|... +++.|+....|. -..+=+.-..++....|++.+..+..+.....-|++..|..--+
T Consensus 278 ~~rKg~~ilE~aWK~ePHP~---ia~lY~~ar~gd-ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 278 NLRKGSKILETAWKAEPHPD---IALLYVRARSGD-TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred chhhhhhHHHHHHhcCCChH---HHHHHHHhcCCC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999888764 444444444332 12222333455667789999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHH-hcCCc--HHHHHHHHHhhCCCCh
Q 022777 231 DALNKDAKDPETLANLVVCSL-HQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 231 ~al~~~p~~~~~~~~l~~~~~-~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
.+....|... +..-|+.+-. ..|+. +..++-++.+ -|.+|
T Consensus 354 aa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdP 396 (531)
T COG3898 354 AAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK-APRDP 396 (531)
T ss_pred HHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCC
Confidence 9999999854 3445666654 44765 7777777774 45444
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.63 E-value=1.6e-06 Score=64.47 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC---CHHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM---TGLILN 210 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~ 210 (292)
++.+.++.++-..|+.++|+.+|++++....+.. ...+..+. .+...|++++|+.++++.+..+|+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~las--tlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLAS--TLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 4455666666677777777777777766543332 11222221 122335566666666666666666 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
.++.++...|++++|+..+..++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666554
No 169
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.62 E-value=1.6e-06 Score=65.72 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~ 170 (292)
.+..++.-|...++.|+|.+|++.|+. +-.+++.+.++.+|.+.|++++|+..+++.++++|.|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 466778888888899999999888876 34567888888889999999999999999999988885
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=1.7e-05 Score=79.37 Aligned_cols=248 Identities=16% Similarity=0.070 Sum_probs=151.8
Q ss_pred hhhhccHHHHHhhccCCCC-CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCChhHH
Q 022777 16 NFYLGAYQAAINNSDLTNL-PPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 16 ~~~~g~~~~Ai~~~~~~~~-~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
+...|++.+|+.. +... ++..........+......|++..+..++... ...+.......+.+....|+.+++
T Consensus 351 ~~~~g~~~~Al~~--a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 351 WLAQGFPSEAIHH--ALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHCCCHHHHHHH--HHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3446788887766 2221 12212233333556677778887766666543 111111222334444456788888
Q ss_pred HHHHHHHhcCCC--C---C-c-cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CC-ch----hHHHHHHHHHHhCCChH
Q 022777 91 ISSLKEWLSDPA--I---G-S-NATLRLIAGIIFMHEEDYNEALKHTNA-----GG-TM----ELHALNVQIFLKMHRSD 153 (292)
Q Consensus 91 ~~~~~~~l~~~~--~---p-~-~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~-~~----~~~~~~a~~~~~~~~~~ 153 (292)
...+..+...-. . + . .......+|.++...|++++|...+++ +. .. .+...++.++...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 887776643200 1 1 1 234455678888899999999988876 11 11 23456777888899999
Q ss_pred HHHHHHHHHHhhCCC----cH--HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC-----CC---CHHHHHHHHHHHHhc
Q 022777 154 YAERQLRAMQQIDED----HT--LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY-----PM---TGLILNGKAVCCMHM 219 (292)
Q Consensus 154 ~A~~~l~~~~~~~p~----~~--~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~la~~~~~~ 219 (292)
+|...+++++..... +. ......+.+. ...|++++|...+++++... +. ....+..+|.++...
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~--~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEIL--FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 999999998875321 11 1111222232 23567999999888876531 11 223456778889999
Q ss_pred CCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 220 GNFDEAEGLLLDALNKDAK-----DPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
|++++|...+++++...+. ....+..++.+....|++ |...+.++..+
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998875321 234455677788888887 77777777654
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.60 E-value=8e-06 Score=73.12 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCH---HHHHHHhhc--------CCchhHHHHHHHHHHh---------CCChHHHHHHHHHHHhhCCCcH
Q 022777 111 LIAGIIFMHEEDY---NEALKHTNA--------GGTMELHALNVQIFLK---------MHRSDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 111 ~~la~~~~~~g~~---~~A~~~~~~--------~~~~~~~~~~a~~~~~---------~~~~~~A~~~l~~~~~~~p~~~ 170 (292)
+..|...+..+.. +.|+..|.+ |+...++..++.++.. .....+|..+.+++++++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 5555555544433 345555544 3334455555544433 2345678889999999999998
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHH-
Q 022777 171 LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL-ANLVV- 248 (292)
Q Consensus 171 ~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~- 248 (292)
......+.+....+ +++.|...|++++..+|+++.+++..|++....|+.++|...++++++++|.-..+- ..+-.
T Consensus 339 ~a~~~~g~~~~~~~--~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 339 KILAIMGLITGLSG--QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred HHHHHHHHHHHhhc--chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 77666666555543 499999999999999999999999999999999999999999999999999976543 23333
Q ss_pred HHHhcCCc-HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHH
Q 022777 249 CSLHQGKS-TSRYLNQLKLTHPDHMLVKRASSGDESFERAL 288 (292)
Q Consensus 249 ~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 288 (292)
.|...+-. +++++-+-.+. ..|-.+-+-..+.++.-++|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 456 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKETES-ESHRVIIDNILKLKQLTRIC 456 (458)
T ss_pred HHcCCchhhhHHHHhhcccc-ccchhhHHHHHHHHHHHHHh
Confidence 45555544 77776554332 33444444444555554443
No 172
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=7e-05 Score=66.86 Aligned_cols=249 Identities=8% Similarity=-0.047 Sum_probs=172.0
Q ss_pred hccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHH
Q 022777 19 LGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSL 94 (292)
Q Consensus 19 ~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~ 94 (292)
++++..|-...+ .+..+.. +...++..+.+=+......-|.....++ .|.-...|+....+-...|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 455555655532 4444433 3555666666667777777777777766 4444556666666666678888888888
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc-
Q 022777 95 KEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH- 169 (292)
Q Consensus 95 ~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~- 169 (292)
++-+.- .|+ ..++...-.--++.+..+.|..+|++ .+....++..+..-.+.|+..-|..+|+.+++.-.++
T Consensus 165 erW~~w--~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 165 ERWMEW--EPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHcC--CCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 888887 676 56666666777788888888888888 4555667777888888899999999999988764333
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC--HHHHHHHHHHHHhcCCHHH---HH-----HHHHHHHhhCCCC
Q 022777 170 TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT--GLILNGKAVCCMHMGNFDE---AE-----GLLLDALNKDAKD 239 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~---A~-----~~~~~al~~~p~~ 239 (292)
....+..+++.+...+..++.|..+|+=+++.-|.+ -.++-.+-..--+-|+... ++ -.|++.+..+|-|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 333444445554444456899999999999988877 3444444444444555433 22 3578888899999
Q ss_pred HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCC
Q 022777 240 PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 240 ~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~ 271 (292)
.++|+.+..+....|+. ..+.+++++...|-.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 99999988887777876 778888888766654
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.59 E-value=2.8e-05 Score=61.22 Aligned_cols=118 Identities=15% Similarity=0.018 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILN 210 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~ 210 (292)
+...-++.++..+...|++.+|..+|.+++.- .-++....++++...+. .+++..|...++++.+-+|. +|+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa--~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA--IQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh--hccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 33344444444455555555555555544432 22222222222222222 12345555555555444443 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
.+|.++...|++.+|+..|+.++...|+ +.+.+..+..+..+|
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 4555555555555555555555555554 333444444444444
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=2.1e-06 Score=63.79 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 022777 174 LANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK---DPETLANLV 247 (292)
Q Consensus 174 l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~ 247 (292)
+..+|++-. .|+.++|+..|++++...++. ..++..+|.++..+|++++|+..+++++...|+ +..+...++
T Consensus 5 ~~~A~a~d~--~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDS--LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 334555443 467999999999999875554 468999999999999999999999999999898 778888889
Q ss_pred HHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhcC
Q 022777 248 VCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292 (292)
Q Consensus 248 ~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
.++...|++ +.+.+-.++. .....|.+++..|+
T Consensus 83 l~L~~~gr~~eAl~~~l~~la------------~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA------------ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 999999998 6655544332 22228899988875
No 175
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.58 E-value=2.8e-06 Score=64.32 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCC----
Q 022777 186 SKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET---LANLVVCSLHQGK---- 255 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~---- 255 (292)
|+|.+|+..|+.+...+|.+ ..+...+|.++.+.|++++|+..+++-++++|+++.+ ++..|.++..+..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~ 103 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQ 103 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHh
Confidence 33555555555544444432 2444555555555555555555555555555554432 3333433333221
Q ss_pred -------c------HHHHHHHHHhhCCCChhHHhH
Q 022777 256 -------S------TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 256 -------~------a~~~~~~~~~~~P~~~~~~~~ 277 (292)
. |...|+++++..|+++.+.+-
T Consensus 104 ~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 104 SFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred hhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 0 566677777777777766543
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=3.2e-06 Score=70.50 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=75.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHT-----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILN 210 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~-----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 210 (292)
.+..+.-+++.|++..|...|...++..|++. ..||+++++ .+|++++|...|..+++..|++ |+.++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y----~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY----AQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH----hcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 56667777788888888888888888888774 223333322 3466888888888888776664 57888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 244 (292)
.+|.++..+|+.++|...|+++++..|+.+.+..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888888888888888888888888776553
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.55 E-value=5.9e-06 Score=64.96 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=105.0
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
|.+..+....+.+.. .|. ..-.+.||..+...|++.+|...|.+ .+++....-+++..+..+++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~--ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAI--APT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhh--chh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 444444444555554 454 45578889999999999999999988 367777778888899999999999999
Q ss_pred HHHHhhCCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 160 RAMQQIDEDH--TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 160 ~~~~~~~p~~--~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
+++-+.+|.- +...+..+..+- ..|++.+|...|+.++...|+ +......+..+.++|+.++|...+..+.+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~la--a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLA--AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHH--hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9998876543 122233333222 346799999999999998876 66677789999999999998887776654
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.54 E-value=2.1e-07 Score=56.33 Aligned_cols=43 Identities=35% Similarity=0.331 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
|.++..+|.++...|++++|++.|+++++.+|+|+++|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4578999999999999999999999999999999999998875
No 179
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=9.9e-05 Score=68.10 Aligned_cols=215 Identities=11% Similarity=0.063 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHhhcC--------
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS-----NATLRLIAGIIFMHEEDYNEALKHTNAG-------- 133 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~-------- 133 (292)
+|.+...|..-..++. |+..+-+.+|.+++.. ++|. -...+..+|..|...|+.+.|..+|++.
T Consensus 345 n~~nV~eW~kRV~l~e--~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKLYE--GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhhhhc--CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 5666666666666554 6888889999999875 2443 3477899999999999999999999982
Q ss_pred -CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc----------HHHHH---HHHHH---HHHhccccHHHHHHHHH
Q 022777 134 -GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH----------TLTQL---ANAWL---NLAVGGSKIQEAYLIFQ 196 (292)
Q Consensus 134 -~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~----------~~~~l---~~a~~---~l~~~~~~~~~A~~~~~ 196 (292)
+-.+.+..-|.+-+...+++.|.++++++.-.+... .-.++ ...|. -+...-|-++.-..+|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 223456677888889999999999999998764221 11111 12232 22222356888888999
Q ss_pred HhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH-HhcC-Cc---HHHHHHHHHhhCC
Q 022777 197 DFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD--AKDPETLANLVVCS-LHQG-KS---TSRYLNQLKLTHP 269 (292)
Q Consensus 197 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~-~~~g-~~---a~~~~~~~~~~~P 269 (292)
+++++---.|.+..+.|..+.+..-+++|-+.|++.+.+. |+-.++|...-... ...| .. ++.+|+++++..|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 9999988899999999999999999999999999999985 56668886654432 2333 33 9999999999888
Q ss_pred CChhHHhHHhhHHHHH
Q 022777 270 DHMLVKRASSGDESFE 285 (292)
Q Consensus 270 ~~~~~~~~~~~~~~~~ 285 (292)
....+.+...-..|+
T Consensus 582 -p~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 582 -PEHAKTIYLLYAKLE 596 (835)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 334444444444444
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=6.2e-07 Score=79.97 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET---LANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
.|+++..++++|.++.+.|++++|+..|+++++++|+++++ ++|+|.+|..+|+. |...+++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555433 55555555555544 45555555443
No 181
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.48 E-value=0.00016 Score=66.82 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=178.6
Q ss_pred hhhhccHHHHHhh-cc-CCCCCCc----hHHHHHHHHHHHHHhhCChhHHHHhhhhc-C------CchHHHHHHHHHhhc
Q 022777 16 NFYLGAYQAAINN-SD-LTNLPPD----DAVERDCLVYRSYIALGSYQLVISEIDES-A------ATPLQAVKLLALYLS 82 (292)
Q Consensus 16 ~~~~g~~~~Ai~~-~~-~~~~~p~----~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~------~~~~~a~~~la~~~~ 82 (292)
-++.|++.+-|.. .+ +.+++|. .-......+|+.|...|+.+.|...++++ . ..-...|...|..-.
T Consensus 357 ~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 3556666665555 33 4445543 12244566788899999999999999887 1 111445777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcc-------------------HHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSN-------------------ATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMEL 138 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~ 138 (292)
...+++.|..+.+++..- |.+ ..+|..++.+....|-++.--..|++ --.|+.
T Consensus 437 rh~~~~~Al~lm~~A~~v---P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHV---PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred hhhhHHHHHHHHHhhhcC---CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 777888998888888764 333 23444455555555555555555555 367788
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCc--HHHHH--HHHHHHHHhccccHHHHHHHHHHhHhhCCCC-H-HHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDH--TLTQL--ANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT-G-LILNGK 212 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~--~~~~l--~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~-~-~~~~~l 212 (292)
....|..+....-++++-+.|++-+.+-|-. ...+. ..-++. .-|.-+.+.|..+|+++++..|.. . .++...
T Consensus 514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~-rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 514 IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK-RYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888888888888999999999988874332 22111 111111 123346899999999999987742 2 467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHH--HHHHhcCCc-HHHHHHHHHhhCCCChh------HHhHHhhHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNK-DAKDPETLANLV--VCSLHQGKS-TSRYLNQLKLTHPDHML------VKRASSGDE 282 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~--~~~~~~g~~-a~~~~~~~~~~~P~~~~------~~~~~~~~~ 282 (292)
+.+-.+-|--..|++.|++|... .+.+---++|+- .+-.-.|-+ .+.+++++++.-|++.. ..++-...|
T Consensus 593 A~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 593 AKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh
Confidence 88888899999999999998764 343333344432 233345666 88999999999888753 334455566
Q ss_pred HHHHHHhhc
Q 022777 283 SFERALQSV 291 (292)
Q Consensus 283 ~~~~~~~~~ 291 (292)
..|+|-+=|
T Consensus 673 EidRARaIy 681 (835)
T KOG2047|consen 673 EIDRARAIY 681 (835)
T ss_pred hHHHHHHHH
Confidence 666665433
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=2.7e-06 Score=70.98 Aligned_cols=85 Identities=8% Similarity=0.024 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCCh
Q 022777 84 PDNKESTISSLKEWLSDPAIGS---NATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRS 152 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~ 152 (292)
.|++..|...|...+.. .|+ .++++++||.+++.+|++++|...|.. |..|++.+.+|.+...+|+.
T Consensus 154 sgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34444444444444444 333 234445555555555555555444443 23344444455555555555
Q ss_pred HHHHHHHHHHHhhCCCcH
Q 022777 153 DYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~ 170 (292)
++|-..|+++++..|+..
T Consensus 232 d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 232 DEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHHCCCCH
Confidence 555555555555444443
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.45 E-value=1.7e-06 Score=67.62 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN----------FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS- 256 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~- 256 (292)
++.|++.++.....+|.+++.+++-|.++.++.+ +++|+.-|+++|.++|+..++++++|.++...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555544422 23455555555555666666665655554433321
Q ss_pred ------------HHHHHHHHHhhCCCChhHHh
Q 022777 257 ------------TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 257 ------------a~~~~~~~~~~~P~~~~~~~ 276 (292)
|.++|+++...+|++.....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 33455555555566554443
No 184
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=7.8e-05 Score=74.00 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=151.5
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhH
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN----ATLRLIAGIIFMHEEDYNEALKHTNA----GGTMEL 138 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~ 138 (292)
.|.....|...-.+....++.++|....++++.. +++.. ...|..+-.+...-|.-+.-.+.|++ .+....
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 4555566666666777789999999999999975 34432 34455444445555655566666766 345567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCC 216 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~ 216 (292)
+..+.-+|...+++++|.++++.+++.-......++..+-+.+.+ .+-+.|..++.++++.-|. +.++....|.+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~--ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ--NEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc--cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788889999999999999999999988655444455544444443 4478899999999998887 888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhC
Q 022777 217 MHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 268 (292)
++.|+-+.+...|+..+.-+|.-.+.|.-++..-.+.|.. ++.+|+++..+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998777766666665 788888887653
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.41 E-value=7.6e-05 Score=61.89 Aligned_cols=155 Identities=16% Similarity=0.076 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchh---HHHHHHHHHHhC--
Q 022777 83 SPDNKESTISSLKEWLSDPAIGS---NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTME---LHALNVQIFLKM-- 149 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~---~~~~~a~~~~~~-- 149 (292)
+.|++++|+..|+.+..+ .|. ...+.+.++.++.+.+++++|+...++ |.+++ +.++.|.+++..
T Consensus 46 ~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 46 QKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred hcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 446666666666666554 333 345556666666666666666666655 44433 233444433321
Q ss_pred ------CChHHHHHHHHHHHhhCCCcHHH----------HHHHHH-----HHHHhccccHHHHHHHHHHhHhhCCCCH--
Q 022777 150 ------HRSDYAERQLRAMQQIDEDHTLT----------QLANAW-----LNLAVGGSKIQEAYLIFQDFSEKYPMTG-- 206 (292)
Q Consensus 150 ------~~~~~A~~~l~~~~~~~p~~~~~----------~l~~a~-----~~l~~~~~~~~~A~~~~~~~~~~~p~~~-- 206 (292)
.-..+|...++++++..|++... +..++. ...+...|.+--|..-++++++..|+.+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 12245677777888888888211 111111 1123345679999999999999887754
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCH
Q 022777 207 -LILNGKAVCCMHMGNFDEAEGLLLDALNK-DAKDP 240 (292)
Q Consensus 207 -~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~ 240 (292)
+++..+..++..+|-.++|.+.-. +|.. .|+++
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAK-VLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCCCc
Confidence 688889999999999999988655 5554 45554
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=4.1e-05 Score=72.38 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=135.5
Q ss_pred hhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcC-------------CchHH----------
Q 022777 16 NFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-------------ATPLQ---------- 72 (292)
Q Consensus 16 ~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~-------------~~~~~---------- 72 (292)
|..+|..++|.+..+ ..+--.--..|+-.|.-+...++.+.|+++|+++. |+..+
T Consensus 836 yQs~g~w~eA~eiAE--~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAE--TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HHhcccHHHHHHHHh--hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 344688888888733 11111112346667888888999999999998762 22211
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCCh
Q 022777 73 AVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRS 152 (292)
Q Consensus 73 a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~ 152 (292)
-+...+.++...|+.+.|+..|..+ .-|+.+..+.+-+|+.++|-.+-++..+..+-+.++..|...|++
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A----------~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSA----------KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHh----------hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 1445777777888888888888764 235777888889999999998888888888999999999999999
Q ss_pred HHHHHHHHHHHhhC-------CCcH---HHHHHH---------HHHHHHhccccHHHHHHHHHHh---------------
Q 022777 153 DYAERQLRAMQQID-------EDHT---LTQLAN---------AWLNLAVGGSKIQEAYLIFQDF--------------- 198 (292)
Q Consensus 153 ~~A~~~l~~~~~~~-------p~~~---~~~l~~---------a~~~l~~~~~~~~~A~~~~~~~--------------- 198 (292)
.+|...|.++.... .++. +.++++ +-.|.....+..+.|..+|.++
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 99999988876542 1111 111111 1011111112344444444332
Q ss_pred ------H--hhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 199 ------S--EKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 199 ------~--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+ +++|+ +|.++...+.......+|++|...+-.+
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 23343 6888888899999999999988766543
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.00011 Score=70.03 Aligned_cols=186 Identities=15% Similarity=0.061 Sum_probs=121.3
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQ 158 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~ 158 (292)
.+++.+|++...++++. .|+..-+....|.++.++|+.++|..+++. +.+......+-.+|..+|+.++|...
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35788888888999888 898888888889999999999999988876 35555666777888999999999999
Q ss_pred HHHHHhhCCCcH-HHHHHHHHHHHH--hcc-----------------------------c---------cHHHHHHHHHH
Q 022777 159 LRAMQQIDEDHT-LTQLANAWLNLA--VGG-----------------------------S---------KIQEAYLIFQD 197 (292)
Q Consensus 159 l~~~~~~~p~~~-~~~l~~a~~~l~--~~~-----------------------------~---------~~~~A~~~~~~ 197 (292)
|+++.+.+|... +..+..+++... ..+ . -..=|...+++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 999999888732 112222222110 000 0 01113334444
Q ss_pred hHhhC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHH-HHHhcCCc--HHHHHHHHHhhCCCC
Q 022777 198 FSEKY-PM-TGLILNGKAVCCMHMGNFDEAEGLL-LDALNKDAKDPETLANLVV-CSLHQGKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 198 ~~~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~l~~-~~~~~g~~--a~~~~~~~~~~~P~~ 271 (292)
+++.. +- +..=....-.++..+|++++|...+ .+..+..+.-...+-++.. .+...+++ ..++..++....|++
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 44433 11 1111222334667788999999998 4444555555555555554 34556676 677778888888888
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.40 E-value=0.00027 Score=56.88 Aligned_cols=215 Identities=20% Similarity=0.192 Sum_probs=158.3
Q ss_pred ccHHHHHhh-ccCCCCCCc-hHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCchHHHHHHHHHhhcCCCChhHHHH
Q 022777 20 GAYQAAINN-SDLTNLPPD-DAVERDCLVYRSYIALGSYQLVISEIDES-----AATPLQAVKLLALYLSSPDNKESTIS 92 (292)
Q Consensus 20 g~~~~Ai~~-~~~~~~~p~-~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~~~a~~~la~~~~~~~~~~~A~~ 92 (292)
+.+..++.. .......+. .........+..+...+++..+...+... .+.....+...+......+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 445555555 223332332 12355677788899999999988887755 23445566777777777788999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHH-HHHhcCCHHHHHHHhhcC--------CchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGI-IFMHEEDYNEALKHTNAG--------GTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
.+...+.. .+.+.......+. ++...|+++.|...+.+. .........+..+...++++.+...+.+++
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALAL--DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcC--CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99999886 5665555566666 899999999999999872 123344455556778899999999999999
Q ss_pred hhCCC-cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 164 QIDED-HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 164 ~~~p~-~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
...|. ........+..+. ..+.+.+|...+..++...|.....+..++..+...++++++...+.+++...|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYL--KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHH--HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99888 3333333232222 2346899999999999999987777888888888888899999999999999998
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=5.2e-05 Score=61.18 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=110.4
Q ss_pred CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHH
Q 022777 35 PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRL 111 (292)
Q Consensus 35 ~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~ 111 (292)
.|+.-...++..|..|-.+|-..-|.-.+.++ .|..+..+.-|+-++...|+++.|.+.+...++. +|.+.-+..
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~l 137 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHL 137 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHh
Confidence 34434444555555565566555555555554 4555666666777777777777777777777777 777777777
Q ss_pred HHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccc
Q 022777 112 IAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186 (292)
Q Consensus 112 ~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~ 186 (292)
..|..+.--|+++-|..-+.+ |.+|= +.+.-.+-...-++.+|.+.+.+-.+...+....+..- .++.|+
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf-R~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV---~~yLgk- 212 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPF-RSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIV---EFYLGK- 212 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHhcCCCChH-HHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHH---HHHHhh-
Confidence 777777777777777666654 33332 22222233344566666665544433333332222111 111121
Q ss_pred cHHHHHHHHHHhHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 187 KIQEAYLIFQDFSEKYPMT-------GLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
+.+ ...++++..-..++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 213 -iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 -ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 211 12334443333333 3578888999999999999998888877543
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=1.7e-05 Score=68.28 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHH
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM 217 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 217 (292)
++..+.....+.+..+.|..++.++.+..+-+....+..|.+-... .++..-|..+|+.+++.+|.++.+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455556666777799999999999866554544455544433332 245677999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 218 HMGNFDEAEGLLLDALNKDAKDP---ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
..|+.+.|..+|++++..-|.+. .+|-.+...-...|.. ..++.++..+..|+++.+..+..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999998877766 4666677777777876 78899999999999877766543
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.34 E-value=4.5e-06 Score=73.01 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHhH---hhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHhc
Q 022777 186 SKIQEAYLIFQDFS---EKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNK----DAKDPETL--ANLVVCSLHQ 253 (292)
Q Consensus 186 ~~~~~A~~~~~~~~---~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~--~~l~~~~~~~ 253 (292)
|+|+.|+..-+.-+ +.+.+- -.++.++|.|+.-+|+++.|+++|..++.+ ...-.++. |.||..|--.
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 66888877666532 334442 257888888888888888888888877654 22223332 4455544333
Q ss_pred CCc--HHHHHHHHH
Q 022777 254 GKS--TSRYLNQLK 265 (292)
Q Consensus 254 g~~--a~~~~~~~~ 265 (292)
..+ |+.+.++-+
T Consensus 289 ~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 289 KEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 333 555554443
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=5.5e-06 Score=65.82 Aligned_cols=56 Identities=21% Similarity=0.137 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
++..|+.-..+++++.|....++...|.+|.++.++++|+..|.++++++|....+
T Consensus 149 k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 149 KWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 35555555555555555555555555555555555555555555555555554433
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.33 E-value=2.2e-06 Score=74.98 Aligned_cols=29 Identities=10% Similarity=-0.118 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
.+...+|..+...|..++|..+.++.+++
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444455555555555555444444444
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00055 Score=56.93 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=108.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhH------hhCCCCHHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQID-EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFS------EKYPMTGLILNG 211 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~------~~~p~~~~~~~~ 211 (292)
.+.++.++..+|.|.-....+.++++.+ |..+.+.-.++.+.+. -|+..-|...|+++- ..-..+-.++.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ--~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ--IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456778899999999999999999987 4444333333444443 356777777777432 223345568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.+.++.-.+++.+|...+.+.+..+|.++.+..|-+.|....|+. |.+.++.+.+..|.+....++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 999999999999999999999999999999999999999999987 999999999999998765543
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.22 E-value=4.4e-06 Score=71.52 Aligned_cols=105 Identities=12% Similarity=-0.003 Sum_probs=70.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
..|.-|+++|+|++|+..|.+.+..+|.++......+.+|+... ++..|..-...++.++---..+|...|.....+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777766655444444455433 3667766666666666666667777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
+..+|.+.++.+|++.|++.+..-.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 777777777777777777666554443
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=1.7e-06 Score=49.08 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022777 194 IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAE 226 (292)
Q Consensus 194 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 226 (292)
+|+++++.+|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888886
No 197
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=6.9e-06 Score=66.10 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH 218 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 218 (292)
+..+|.+|-..|-..-|.-.+.+++.+.|+-+.....++.+++. .|+++.|++.|+.+++++|..-.++.+.|..+.-
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~--a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ--AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh--cccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 44567778888888888888888888888776544444433332 3568888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH
Q 022777 219 MGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
-|++.-|.+.+.+-...+|+||-
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChH
Confidence 88888888888888888888873
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00054 Score=57.96 Aligned_cols=172 Identities=19% Similarity=0.107 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
.++.++.+-.-+- |...+.-+.-+.-....|++.+|...|.. +.+.++...++.+|+..|+++.|..+|..
T Consensus 118 Pesqlr~~ld~~~----~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 118 PESQLRQFLDKVL----PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cHHHHHHHHHHhc----ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3545554433322 33445556667778899999999999887 67888999999999999999999999877
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C
Q 022777 162 MQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK--D 239 (292)
Q Consensus 162 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 239 (292)
+-....+..... ..+++-+...-....+ ...+++-+..+|+|..+-+.+|..+...|+.++|...+-..++.+-+ |
T Consensus 194 lP~~~~~~~~~~-l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 194 LPLQAQDKAAHG-LQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred CcccchhhHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 654444433222 2333333211111111 13345566789999999999999999999999999999999987644 4
Q ss_pred HHHHHHHHHHHHhcC--Cc-HHHHHHHH
Q 022777 240 PETLANLVVCSLHQG--KS-TSRYLNQL 264 (292)
Q Consensus 240 ~~~~~~l~~~~~~~g--~~-a~~~~~~~ 264 (292)
..+.-.+..++...| ++ +..+..++
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 272 GEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455666666665555 33 44444444
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=3e-06 Score=57.98 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHhcCCc--HHHHHHHHH
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNK----DAKD---PETLANLVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~l~~~~~~~g~~--a~~~~~~~~ 265 (292)
..+++++|.++..+|++++|+..|++++++ .+++ ..++.++|.++...|++ |.++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455555555555555555555555433 1111 12334445555555544 445554444
No 200
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.11 E-value=8.1e-06 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
+.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999986
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.11 E-value=7e-05 Score=58.77 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHh------ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC--
Q 022777 152 SDYAERQLRAMQQIDEDHT--LTQLANAWLNLAV------GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN-- 221 (292)
Q Consensus 152 ~~~A~~~l~~~~~~~p~~~--~~~l~~a~~~l~~------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-- 221 (292)
|+.|.+.++.....+|.+. +.+.+.++.-+.+ ...-+++|+.-|++++..+|+..+++..+|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6778888888888898875 3344444443321 11348899999999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 222 ---------FDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 222 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
|++|...|++|...+|+|...+..|..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999998776665543
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=2e-05 Score=70.46 Aligned_cols=67 Identities=10% Similarity=-0.077 Sum_probs=35.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT---QLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~---~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
|++++++..+|.+|...|++++|+..|+++++++|++... .+.++.++.. .|++++|+.+++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~--LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY--REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666666666666666665411 2222222222 23455555555555554
No 203
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=7.8e-06 Score=46.24 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
+.+++++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999974
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-05 Score=64.40 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
.+|+.|+.+|.+++-.+|..+.++.+.+.|+++.++|+......++++++.|+....++-+|........+ +++.+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45888888888888888888888888888888888888888888888888888888888888877776666 7887777
Q ss_pred HHhhC
Q 022777 264 LKLTH 268 (292)
Q Consensus 264 ~~~~~ 268 (292)
+..+.
T Consensus 104 a~sl~ 108 (284)
T KOG4642|consen 104 AYSLL 108 (284)
T ss_pred HHHHH
Confidence 76543
No 205
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.06 E-value=2.8e-05 Score=66.68 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH---HH
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN---LA 182 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~---l~ 182 (292)
--.|.-|+++|+|++|+.+|.+ |.++-.+..++..|+++++|..|+..+..++.++.... .+|.. .+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-----KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-----KAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH-----HHHHHHHHHH
Confidence 4467889999999999999987 56778888899999999999999999998888865432 22211 11
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
...|...+|..-++.++.+.|++.++.-.++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 223568889889999999999877755444443
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.0007 Score=64.37 Aligned_cols=164 Identities=13% Similarity=-0.032 Sum_probs=109.8
Q ss_pred HHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHH
Q 022777 46 VYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNE 125 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~ 125 (292)
.|...+.+|-.++|+..|.++ .-+-+|..+|..+|.+++|.++.+.--+ -.--..|+..|.-+...++.+.
T Consensus 806 vAvLAieLgMlEeA~~lYr~c-----kR~DLlNKlyQs~g~w~eA~eiAE~~DR----iHLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQC-----KRYDLLNKLYQSQGMWSEAFEIAETKDR----IHLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHHHHHhhccc----eehhhhHHHHHHHHHhhccHHH
Confidence 455667778888888777765 2334567778888888888777653211 1123466778888888899999
Q ss_pred HHHHhhcC-------------------------CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 022777 126 ALKHTNAG-------------------------GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180 (292)
Q Consensus 126 A~~~~~~~-------------------------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 180 (292)
|+++|++. .++..+...|+.+...|+.|.|+..|..+.... . .+.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f--------s--~Vr 946 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF--------S--MVR 946 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh--------h--hee
Confidence 99999871 223344555777777788888888777664321 1 112
Q ss_pred HHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022777 181 LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 181 l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (292)
+.+=.|+.++|-.+-++ ..|..+-+-+|..|...|++.+|+..|.+|-
T Consensus 947 I~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22224567777655443 3345567789999999999999999988763
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=9.2e-06 Score=55.54 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=38.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc--------C-Cc---hhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA--------G-GT---MELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~-~~---~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
|+-...+..+|.+|...|++++|+.+|++ + .+ ..++..+|.++..+|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455667777777777777777777765 1 11 224556666777777777777777666554
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00022 Score=61.44 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh-cCCHHHHHHHhhc-----CCchhHHHHHHHHHH
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH-EEDYNEALKHTNA-----GGTMELHALNVQIFL 147 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~ 147 (292)
|..+..+..+.+..+.|..+|.++... .+-...+|...|.+-.. .++.+.|.++|+. +.+++.+......+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444445555555678888888888765 45567778888887555 5566668888887 677777777777888
Q ss_pred hCCChHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHT-LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL 207 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~ 207 (292)
..|+.+.|..+|++++..-|... ...+...|+.+....|+.+....+.+++.+..|++..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888888888888887766665 4556666666655556778888888887777777543
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.95 E-value=0.00013 Score=54.13 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=78.7
Q ss_pred hhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------C---CchhHHHHHHHHHHhCC
Q 022777 80 YLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------G---GTMELHALNVQIFLKMH 150 (292)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~---~~~~~~~~~a~~~~~~~ 150 (292)
.+...|+.+.|++.|.+.+.. .|+++.+|...++.+.-+|+.++|+.-+++ + ..-+++..+|.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345679999999999999998 899999999999999999999999999988 1 12346788999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQL 174 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l 174 (292)
+.+.|...|+.+.++.......++
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHH
Confidence 999999999999887554443333
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00025 Score=56.63 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=65.0
Q ss_pred cccHHHHHHHHHHhHhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--H
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTG-----LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--T 257 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a 257 (292)
.|.|.+|..-|..++...|.-+ ..|.+.|.++++++.|+.|+....++++++|.+..++...+.+|.++.++ |
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence 3456666666666666666532 36667777888888888888888888888888777777777777777776 7
Q ss_pred HHHHHHHHhhCCCChh
Q 022777 258 SRYLNQLKLTHPDHML 273 (292)
Q Consensus 258 ~~~~~~~~~~~P~~~~ 273 (292)
.+-++++++++|..-.
T Consensus 188 leDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 188 LEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHhCcchHH
Confidence 7777788777777654
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0069 Score=49.68 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=74.9
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHhhCCCcHHHHHH-HHHH---HHHhccccHHHHHHHHHHhHhhCCCCH-------
Q 022777 139 HALNVQIFLKM-HRSDYAERQLRAMQQIDEDHTLTQLA-NAWL---NLAVGGSKIQEAYLIFQDFSEKYPMTG------- 206 (292)
Q Consensus 139 ~~~~a~~~~~~-~~~~~A~~~l~~~~~~~p~~~~~~l~-~a~~---~l~~~~~~~~~A~~~~~~~~~~~p~~~------- 206 (292)
+..+|.+|... .++++|+.+|+.+-+..........+ .+++ ...-..++|.+|+.+|+++....-+|+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34577788776 88999999999998874333211111 1111 111123679999999999887766654
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
+.++.-|.|++-..+.-.+...+++-.+++|...+..
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 4666778899999999999999999999999987765
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.85 E-value=0.0017 Score=58.75 Aligned_cols=177 Identities=13% Similarity=0.059 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
.+...-++...++++. +|+-++++++||. ....-..+|..++++. ...|....+.....+.....-+...
T Consensus 182 Rnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqA------vkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 182 RNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQA------VKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred CCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHH------HHHHHHhhchhhhhhcccchhhhhh
Confidence 4566667777778877 7888888888774 2344567777777761 1111111111111111111111111
Q ss_pred hCCCcH--HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC
Q 022777 165 IDEDHT--LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNK-DAKD 239 (292)
Q Consensus 165 ~~p~~~--~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 239 (292)
..+.+. ..+..++. ...+.|+.+||+..|+++++.+|. +..++.++-.++...+.+.++...+.+-=.+ -|+.
T Consensus 252 ~Rdt~~~~y~KrRLAm--CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAM--CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred ccccchhhhhHHHHHH--HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 111111 11111121 123457899999999999988775 4458889999999999999999998885433 4677
Q ss_pred HHHHHHHHHHHHh-------------cCCc-----HHHHHHHHHhhCCCChh
Q 022777 240 PETLANLVVCSLH-------------QGKS-----TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 240 ~~~~~~l~~~~~~-------------~g~~-----a~~~~~~~~~~~P~~~~ 273 (292)
..+-|.-+.+-.+ .|-. |.+.+.++.+.+|.-|.
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 7776666554321 2211 45788899999999885
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.85 E-value=0.00027 Score=52.50 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=66.9
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCc--H
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE----TLANLVVCSLHQGKS--T 257 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~--a 257 (292)
+.|+.+.|++.|.+++...|..+.+|++.+..+.-.|+.++|...+.+++++.-+-.. ++...|.+|...|+. |
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 3477899999999999999999999999999999999999999999999887544433 356678888888876 7
Q ss_pred HHHHHHHHhhC
Q 022777 258 SRYLNQLKLTH 268 (292)
Q Consensus 258 ~~~~~~~~~~~ 268 (292)
..-|+.+.++.
T Consensus 135 R~DFe~AA~LG 145 (175)
T KOG4555|consen 135 RADFEAAAQLG 145 (175)
T ss_pred HHhHHHHHHhC
Confidence 76666665543
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0023 Score=55.12 Aligned_cols=214 Identities=13% Similarity=0.068 Sum_probs=143.6
Q ss_pred hccHHHHHhhccCCCCCCchHHHHHHH-HHHHHHhhCChhHHHHhhhhc-------CCchHHHHHHHHHhhcCCCChhHH
Q 022777 19 LGAYQAAINNSDLTNLPPDDAVERDCL-VYRSYIALGSYQLVISEIDES-------AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 19 ~g~~~~Ai~~~~~~~~~p~~~~~a~~~-la~~~~~~g~~~~Al~~~~~a-------~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.|.+..+++. +...+|+ .+.++.+ +|...+..++--+-.+.++++ .... +-+..-+.++-..|+..+|
T Consensus 47 Lggi~a~a~k--L~ssDP~-~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~ar-Ek~h~~aai~~~~g~~h~a 122 (491)
T KOG2610|consen 47 LGGILASAEK--LSSSDPE-AVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAR-EKRHAKAAILWGRGKHHEA 122 (491)
T ss_pred hhhHHHHHHH--HhcCChH-HHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhH-HhhhhhHHHhhccccccHH
Confidence 5666666665 7777887 4555554 344444444433322233222 1110 1112222333456888888
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--C----Cch---hHHHHHHHHHHhCCChHHHHHHHHH
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--G----GTM---ELHALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~----~~~---~~~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
.....+++.+ .|.+.-++-.--.+++..|+...-...+++ | +-| =..-+++..+...|-+++|++.-++
T Consensus 123 ~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~r 200 (491)
T KOG2610|consen 123 AIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADR 200 (491)
T ss_pred HHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHh
Confidence 8999999999 999988888888899999998888888877 3 221 1244677888999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--hh
Q 022777 162 MQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG----LILNGKAVCCMHMGNFDEAEGLLLDAL--NK 235 (292)
Q Consensus 162 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al--~~ 235 (292)
+++++|.+.....+.+.+ ....+++.++.++..+--..=.++. --|.--|.++.+.++++.|+.+|.+-+ ++
T Consensus 201 alqiN~~D~Wa~Ha~aHV--lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l 278 (491)
T KOG2610|consen 201 ALQINRFDCWASHAKAHV--LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRL 278 (491)
T ss_pred hccCCCcchHHHHHHHHH--HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHh
Confidence 999999998777766644 4456789999888776433211111 123446888999999999999998765 34
Q ss_pred CCCCH
Q 022777 236 DAKDP 240 (292)
Q Consensus 236 ~p~~~ 240 (292)
..+|.
T Consensus 279 ~k~Da 283 (491)
T KOG2610|consen 279 EKDDA 283 (491)
T ss_pred hccch
Confidence 55565
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00022 Score=60.26 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH----HHHHHHH
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT----LRLIAGI 115 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~----~~~~la~ 115 (292)
-+..+...+..|++.+|...++.+ .|.+..+...++.++...|+.+.|...+..+-.. ..+... +.+.+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHH
Confidence 344455566666666666666554 4444556666666666666666665555443221 111110 1112222
Q ss_pred HHHhcCCHHHHHHHhhc-CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 116 IFMHEEDYNEALKHTNA-GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
-.-..++..+....+.. |++.++.+.++..+...|++++|..++-.+++.+
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22233444555555544 6666666666666666666666666666666653
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0023 Score=55.14 Aligned_cols=88 Identities=7% Similarity=-0.033 Sum_probs=39.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 144 QIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLA-VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
.++.-+|+.+.-...+++++.. +|+-+...+..+.+.+. .+.|-|++|...-+++++.+|.+.=+.-.++.++...|+
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 3444455555555555555443 44443222222111111 112335555555555555555555445555555555555
Q ss_pred HHHHHHHHHH
Q 022777 222 FDEAEGLLLD 231 (292)
Q Consensus 222 ~~~A~~~~~~ 231 (292)
+.++.+++.+
T Consensus 225 ~Keg~eFM~~ 234 (491)
T KOG2610|consen 225 HKEGKEFMYK 234 (491)
T ss_pred hhhHHHHHHh
Confidence 5555555444
No 217
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00061 Score=54.19 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHhhcCCch--hH--HHHHHH
Q 022777 73 AVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN----ATLRLIAGIIFMHEEDYNEALKHTNAGGTM--EL--HALNVQ 144 (292)
Q Consensus 73 a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~a~ 144 (292)
+...+|..+...|++++|+..++..+.. |.+ .-+-.+||.+.+.+|++++|++.++.+... .+ .-++|.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD 167 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence 4456777777889999999999998875 333 345588999999999999999999984322 33 457799
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLA 175 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~ 175 (292)
+++..|+-++|...|+++++..+++....+.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~~~~~l 198 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPAAREIL 198 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChHHHHHH
Confidence 9999999999999999999998766544443
No 218
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.76 E-value=0.0013 Score=50.95 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=64.2
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQ 263 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~ 263 (292)
.++.+++..++..+....|..+.+-..-|++++..|+|.+|+..|+.+....|..+-...-++.|+...|++ =..+.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~e 102 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADE 102 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHH
Confidence 346778888888887788888888888888888888888888888888777888887777777888777777 3344555
Q ss_pred HHhhCCC
Q 022777 264 LKLTHPD 270 (292)
Q Consensus 264 ~~~~~P~ 270 (292)
+++..|+
T Consensus 103 vle~~~d 109 (160)
T PF09613_consen 103 VLESGAD 109 (160)
T ss_pred HHhcCCC
Confidence 5555543
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.74 E-value=0.0016 Score=60.28 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=82.8
Q ss_pred hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC----CHHHHHHHHHHHHhcCCHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM----TGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~ 223 (292)
.....+.|.+++....+..|++....+..+.+... +|+.++|+..|++++....+ ....++.+|++++-+++|+
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~--~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL--KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 35677889999999999999998777777766554 46699999999987753332 2346788999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHH-HHHHHHHHhcCCc
Q 022777 224 EAEGLLLDALNKDAKDPETL-ANLVVCSLHQGKS 256 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~ 256 (292)
+|...+.+.++.+......+ |..|.|+...|+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999888776655444 4456778877754
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.73 E-value=0.00012 Score=43.98 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL 171 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 171 (292)
+++..++..|...|++++|++.|+++++.+|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 45566666666666666666666666666666653
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.63 E-value=6.1e-05 Score=42.57 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 022777 94 LKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALK 128 (292)
Q Consensus 94 ~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 128 (292)
|+++++. +|+|+.+++.+|.+|...|++++|++
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 6778887 99999999999999999999999963
No 222
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.59 E-value=8.5e-05 Score=66.45 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=74.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 222 (292)
+.-.+..+.++.|...+.++++++|+.....-..+..++. .+.+..|+.-+.++++..|.....|+..|.+.+..+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK--~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK--VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee--echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 4455677788888888888888888765332222333333 34578888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 223 DEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 223 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
.+|...|+....+.|+++.+.--+-.|
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 888888888888888888776544443
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.59 E-value=0.0012 Score=57.25 Aligned_cols=230 Identities=13% Similarity=0.023 Sum_probs=151.6
Q ss_pred CCchhhhhhhhhhccHHHHHhh-cc-CCCCCC-chHHHHHHHHHHHHHhhCChhHHHHhhh----hc---CCch--HHHH
Q 022777 7 PDHLFNLRNNFYLGAYQAAINN-SD-LTNLPP-DDAVERDCLVYRSYIALGSYQLVISEID----ES---AATP--LQAV 74 (292)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~Ai~~-~~-~~~~~p-~~~~~a~~~la~~~~~~g~~~~Al~~~~----~a---~~~~--~~a~ 74 (292)
+.++......|.+.++++||.. .+ +.+++. .+-.-.+-.+..++...|++++++.+-- -+ +... -+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555567788999999988 44 333322 1111222235678899999999775432 11 2222 5577
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcC-CCCCc--cHHHHHHHHHHHHhcCCHHHHHHHhhc-------C----CchhHHH
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSD-PAIGS--NATLRLIAGIIFMHEEDYNEALKHTNA-------G----GTMELHA 140 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~-~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~-------~----~~~~~~~ 140 (292)
+.++.-+....++.+++++-+-.+.. +..|. --.+...+|..+...+.++++++.|+. . -..+...
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 78888777777788888887776654 22332 125667789999999999999999987 1 2234677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC----Cc-HHHHHHHHHHHHH---hccccHHHHHHHHHHhHh---hCCC---CH
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDE----DH-TLTQLANAWLNLA---VGGSKIQEAYLIFQDFSE---KYPM---TG 206 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p----~~-~~~~l~~a~~~l~---~~~~~~~~A~~~~~~~~~---~~p~---~~ 206 (292)
.++.++-+..++++|+-...++.++-. ++ ....-..+.+.+. ...|+.-+|.++-+++.+ ...+ .+
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 889999999999999999999987621 11 1111111112221 124567777777776543 2333 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
.-+..+|.+|...|+.+.|..-|++|....
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 566778999999999999999999998753
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.052 Score=47.96 Aligned_cols=215 Identities=13% Similarity=0.013 Sum_probs=139.5
Q ss_pred HhhCChhHHHHhhhhc---C--CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH--HHHhcCCH
Q 022777 51 IALGSYQLVISEIDES---A--ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI--IFMHEEDY 123 (292)
Q Consensus 51 ~~~g~~~~Al~~~~~a---~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~--~~~~~g~~ 123 (292)
...|+-..|.....++ . ...+..+.+-++.-.-.|+++.|.+-|+.++.+ |+- ...-+.|. -..+.|..
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEt-RllGLRgLyleAqr~Gar 170 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PET-RLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHH-HHHhHHHHHHHHHhcccH
Confidence 3456666666666544 1 222333333344444568999999999999875 763 22223332 22367899
Q ss_pred HHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCCcHHH---HHHHHHHHHHhccccHHHHH
Q 022777 124 NEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI---DEDHTLT---QLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 124 ~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~---~p~~~~~---~l~~a~~~l~~~~~~~~~A~ 192 (292)
+-|..+-.+ |.-+=+....-......|+++.|+++++...+. .++-..- -+.-+-..-.. .-+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence 988888776 333323333345567899999999999887654 3433211 11111111111 13478888
Q ss_pred HHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCcHHHH---HHHHHhhCC
Q 022777 193 LIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKSTSRY---LNQLKLTHP 269 (292)
Q Consensus 193 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~a~~~---~~~~~~~~P 269 (292)
..-.+..++.|+-...-..-+..+++.|+..++-.+++.+.+.+|. |+++ +..+....|+.++.- .+++....|
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 8999999999999998889999999999999999999999999997 4433 333455666664443 445555789
Q ss_pred CChh
Q 022777 270 DHML 273 (292)
Q Consensus 270 ~~~~ 273 (292)
||..
T Consensus 327 nnae 330 (531)
T COG3898 327 NNAE 330 (531)
T ss_pred cchH
Confidence 8875
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.55 E-value=0.0098 Score=55.08 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=105.1
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHH-HHHHH-----HHHH----hcCCHHHHHHHhhc-----CCchhHHHHHHHHHH
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATL-RLIAG-----IIFM----HEEDYNEALKHTNA-----GGTMELHALNVQIFL 147 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~-~~~la-----~~~~----~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~ 147 (292)
=.||.+.+++.+.+..+.+ +-..+-+ ..+++ ..++ .....+.|.+.+.. |+..=.....|.++.
T Consensus 200 F~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3578899999998877642 2222222 11111 1112 24456777777765 666666777899999
Q ss_pred hCCChHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH-HHHHHHHHHHHhcCCH
Q 022777 148 KMHRSDYAERQLRAMQQIDED----HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG-LILNGKAVCCMHMGNF 222 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~----~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~ 222 (292)
..|++++|+..+++++..... +.......+|.++.+. +|.+|...|.++.+....+. .+.+..|.|+...|+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999999988753211 1344556678777654 59999999999999877755 4566679999999999
Q ss_pred -------HHHHHHHHHHHhh
Q 022777 223 -------DEAEGLLLDALNK 235 (292)
Q Consensus 223 -------~~A~~~~~~al~~ 235 (292)
++|...|+++-..
T Consensus 357 ~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 8888888887554
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.53 E-value=0.00018 Score=40.42 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999999964
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.50 E-value=0.0086 Score=54.33 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=79.4
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcC--CchhHHHHHHH
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAG--GTMELHALNVQ 144 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~~~~~~a~ 144 (292)
+|....++..|+.=.. ....++...|+++++- .+..+.........|..-+. ...+. ..+-+...++.
T Consensus 198 ~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkA------gE~~lg~s~~~~~~g~~~e~--~~~Rdt~~~~y~KrRLAm 267 (539)
T PF04184_consen 198 NPDCADAYILLAEEEA--STIVEAEELLRQAVKA------GEASLGKSQFLQHHGHFWEA--WHRRDTNVLVYAKRRLAM 267 (539)
T ss_pred hhhhhHHHhhcccccc--cCHHHHHHHHHHHHHH------HHHhhchhhhhhcccchhhh--hhccccchhhhhHHHHHH
Confidence 3444566666654322 2456667777776653 11111111112222222222 12221 12334455666
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh-CCCCHHHHHHHHHHHHh-cCC-
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK-YPMTGLILNGKAVCCMH-MGN- 221 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~-~g~- 221 (292)
+..+.|+.++|++.++++++..|......+-...+......++|.++..++.+--+. -|.++...+..|.+..+ .++
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 777777777777777777666554322222221222222334566665555543211 23444444443333322 111
Q ss_pred --------------HHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 222 --------------FDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 222 --------------~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
-..|++.+.+|++.+|.-|..+..
T Consensus 348 fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 348 FSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred cCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 123677888888888887765543
No 228
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.025 Score=46.54 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=77.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC------CHHHHHHHHHH
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM------TGLILNGKAVC 215 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~ 215 (292)
-..+|-.+|++..|-++.-++-++.. .+..++.+|+..|+++.+-+.. ...-+.-.|..
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyE---------------sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYE---------------SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHh---------------hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 34566667777666655544433321 1224577888888887654221 12345566778
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHH-------HHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPETLAN-------LVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
-...++|.+|+..|+++....-+|+...+. -|.|+....+. +...+++-.+.+|.-...+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 888999999999999998877676654333 45565554554 77788888888998765444
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0033 Score=48.36 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=72.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLAN-AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~-a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
.+......++.+.+...+++++.+..++.+..+.. .|+ ......+++.. ..++..++..+...|
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~---------~~~r~~l~~~~------~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV---------EPERERLRELY------LDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH---------HHHHHHHHHHH------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH---------HHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 34555677899999999999999865553222111 222 11112222211 235667888888999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
++++|+..+++++..+|-+..++..+..++...|+. |.+.+++..+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 7777766644
No 230
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.43 E-value=0.00028 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
++++.+|.++.+.|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999998874
No 231
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0033 Score=51.86 Aligned_cols=105 Identities=14% Similarity=0.007 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhh--------CCCcH----------HHHHHHHHHHHHhccccHHHHHHHHH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQI--------DEDHT----------LTQLANAWLNLAVGGSKIQEAYLIFQ 196 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--------~p~~~----------~~~l~~a~~~l~~~~~~~~~A~~~~~ 196 (292)
...+....|.-+++.|++.+|..-|++++.. .|.++ .+.+..+.+++ ..|.|-++++.-.
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L--~~~e~yevleh~s 254 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL--KKEEYYEVLEHCS 254 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh--hHHHHHHHHHHHH
Confidence 3445556677788889999998888888653 23331 11111111222 2244666666666
Q ss_pred HhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 197 DFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 197 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
+++..+|.|..+++..|.+....=+.++|...|.++|+++|.-..
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 666666666666666666666666666666666666666665443
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00052 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
++++..+|.++..+|++++|+..++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888874
No 233
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.036 Score=54.41 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHh-
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-TLTQLANAWLNLAV- 183 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~- 183 (292)
.+.+|..+|...++.|...+|++.|-+.++|..+.....+..+.|++++-.+.+.-+.+.-..+ ....+..+++.+..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 4789999999999999999999999999999999999999999999999999887776653222 12222222222110
Q ss_pred -----------------------ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 184 -----------------------GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 184 -----------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+.+.|+.|.-+|.. ..-+..++..+..+|+|+.|...-++|
T Consensus 1183 ~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1183 TELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11223334333332 233667888888889998888887774
No 234
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.34 E-value=0.00043 Score=62.08 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.+.++.|+..|.++++++|+.+.++-+.+..+.+.+++-.|+..+.++++.+|....+++..|.+....+++ |...++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 345888888888888888888888888888888888888888888888888888888888887777777777 888888
Q ss_pred HHHhhCCCChhHHhHHhhH
Q 022777 263 QLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 263 ~~~~~~P~~~~~~~~~~~~ 281 (292)
++....|++|.++.....+
T Consensus 97 ~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhhhcCcCcHHHHHHHHHH
Confidence 8888888888877765444
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.33 E-value=0.032 Score=43.32 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHH
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM 217 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 217 (292)
+.+....+-...++.++++.++..+.-+.|......+..+|+.+.. |++.+|+.+|+.+....|..|..--.++.|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3445556677888999999999999999999999999999988875 46999999999999999999988888999999
Q ss_pred hcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHh
Q 022777 218 HMGNFDEAEGLL-LDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 218 ~~g~~~~A~~~~-~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
.+|+.+ .+.+ .++++..| ++++..-+..+...
T Consensus 90 ~~~D~~--Wr~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 90 ALGDPS--WRRYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HcCChH--HHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 888765 3333 33454444 56666444444433
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.04 Score=45.67 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
...+..-+.+|...++++.|...+.++ ...+..++..-| ..+++|.-..+++-+ -|+-...+..-..+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA------KayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA------KAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 334444556677778888888777766 111112222222 234455555555543 355555555555667
Q ss_pred HhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHH----HHHHHHHhccccHHHHHH
Q 022777 118 MHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLA----NAWLNLAVGGSKIQEAYL 193 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~----~a~~~l~~~~~~~~~A~~ 193 (292)
...|.++-|-..+++ +-=.....++++|+++|++++.+-..+...+.+ ..-..++....++.+|-.
T Consensus 102 ~E~GspdtAAmaleK----------Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 102 VECGSPDTAAMALEK----------AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHhCCcchHHHHHHH----------HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 777777766666654 222235667888888888887752211111111 000111122245777777
Q ss_pred HHHHhH------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHh
Q 022777 194 IFQDFS------EKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK----DAKDPETLANLVVCSLH 252 (292)
Q Consensus 194 ~~~~~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~ 252 (292)
.+.+.. ...|+--..+...-.++....+|..|++.++.-.++ .|++..++-||...|..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 776632 223333344555555566667999999988886654 46666677777766644
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00071 Score=55.46 Aligned_cols=91 Identities=13% Similarity=-0.074 Sum_probs=63.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 222 (292)
+..|..-.+++.|+..|.+++.++|..+...--.+.+++.. .+++.+..--+++++..|+.+..++.+|.+++.+..+
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555666777788888888888777654443444455543 3477777777777788888888888888888888888
Q ss_pred HHHHHHHHHHHhh
Q 022777 223 DEAEGLLLDALNK 235 (292)
Q Consensus 223 ~~A~~~~~~al~~ 235 (292)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888887544
No 238
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.32 E-value=0.09 Score=45.38 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred hCChhHHHHhhhhc-CCchHHHHHHHHHhhcC----CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCCH
Q 022777 53 LGSYQLVISEIDES-AATPLQAVKLLALYLSS----PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH----EEDY 123 (292)
Q Consensus 53 ~g~~~~Al~~~~~a-~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~----~g~~ 123 (292)
.+.+..++..++.+ ...+..+...++.++.. ..+..+|+..|+... ...++...+.+|.+|.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA----ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh----hcccHHHHHhHHHHHhcCCCcccCH
Confidence 34445555555544 21222344445544442 123455666665433 23445556666666554 3355
Q ss_pred HHHHHHhhc
Q 022777 124 NEALKHTNA 132 (292)
Q Consensus 124 ~~A~~~~~~ 132 (292)
.+|..+|++
T Consensus 130 ~~A~~~~~~ 138 (292)
T COG0790 130 VKALKYYEK 138 (292)
T ss_pred HHHHHHHHH
Confidence 666666655
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0049 Score=49.15 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL---TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~---~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
...++..++..|++++|+..++.++....|..+ ..+-++.+.+. .+++++|+..++...... -.+..--..|.+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q--~~k~D~AL~~L~t~~~~~-w~~~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ--QKKADAALKTLDTIKEES-WAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH--hhhHHHHHHHHhcccccc-HHHHHHHHhhhH
Confidence 445677788889999999999888876655532 22222333333 456888887777653322 233445567999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
++..|+.++|+..|++++..++.++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999999999886654
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.30 E-value=0.00062 Score=38.20 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
+++..+|.++..+|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567888999999999999999999999998874
No 241
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.28 E-value=0.0045 Score=43.49 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=47.1
Q ss_pred HHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcC
Q 022777 192 YLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD--PETLANLVVCSLHQG 254 (292)
Q Consensus 192 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g 254 (292)
+..+++.+..+|+++.+.+.+|..++..|++++|+..+..+++.+|++ ..+.-.+..++...|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 456778889999999999999999999999999999999999998886 334444444443333
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.25 E-value=0.0051 Score=46.90 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
++.+++..++..+-...|+.+++-..-|++++..|+|.+|++.|+++.+..|..|-...-++.|+...|++
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 44666666666666666666666666677777777777777777666666666665555666666666665
No 243
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.24 E-value=0.14 Score=48.89 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=113.8
Q ss_pred ccCCCchhhhhhh--hhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHH-----H
Q 022777 4 AAAPDHLFNLRNN--FYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVK-----L 76 (292)
Q Consensus 4 ~~~~~~~~~~~~~--~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~-----~ 76 (292)
.||-.++|.++.. ..-.+|..|-.. +++.+.. +-.+ -.|..+-++++++...+..+.|..+-+. .
T Consensus 527 ggdgt~fykvra~lail~kkfk~ae~i--fleqn~t---e~ai---gmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 527 GGDGTDFYKVRAMLAILEKKFKEAEMI--FLEQNAT---EEAI---GMYQELHKWDEAIALAEAKGHPALEKLKRSYLQA 598 (1636)
T ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHH--HHhcccH---HHHH---HHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4777888888754 445678888777 5543332 1112 2344556677776555433333221111 0
Q ss_pred ---------HHHhhcCCCChhHHHHHHHHHhcC----------CC---CC---cc-------HHHHHHHHHHHHhcCCHH
Q 022777 77 ---------LALYLSSPDNKESTISSLKEWLSD----------PA---IG---SN-------ATLRLIAGIIFMHEEDYN 124 (292)
Q Consensus 77 ---------la~~~~~~~~~~~A~~~~~~~l~~----------~~---~p---~~-------~~~~~~la~~~~~~g~~~ 124 (292)
-+.+....||-=.|++.|-+.-.. .. +. .. .+.|-.-|.+|.+..+++
T Consensus 599 l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~d 678 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFD 678 (1636)
T ss_pred HHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHH
Confidence 112222334444445554433110 00 00 00 123334556666677799
Q ss_pred HHHHHhhcCCc------------hhHHH----HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccH
Q 022777 125 EALKHTNAGGT------------MELHA----LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKI 188 (292)
Q Consensus 125 ~A~~~~~~~~~------------~~~~~----~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~ 188 (292)
+|+++|++++. |+-.. ..|.-+..+|+++.|+.+|-++--. ..-..+ .+ +...+
T Consensus 679 kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~------~kaiea--ai--~akew 748 (1636)
T KOG3616|consen 679 KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL------IKAIEA--AI--GAKEW 748 (1636)
T ss_pred HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH------HHHHHH--Hh--hhhhh
Confidence 99999998321 11111 2245677889999999888665222 111112 11 23458
Q ss_pred HHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 189 QEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 189 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
.+|+.+++.+.++... ..+|-..+.-|...|+|+-|++.|.++
T Consensus 749 ~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 749 KKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhc
Confidence 8999888887665433 335666777788888888888887764
No 244
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.041 Score=43.20 Aligned_cols=136 Identities=14% Similarity=0.207 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc------CCch-hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHH
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA------GGTM-ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT----LTQLANAWL 179 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~------~~~~-~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~----~~~l~~a~~ 179 (292)
+.-+.-+-+.|++++|+..|.. +..| -+....+.+....|+...|...|.++-...|-+. ..++--+|.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 4444556678888888888865 2333 3556667788889999999999999877654332 334444444
Q ss_pred HHHhccccHHHHHHHHHHhH-hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 180 NLAVGGSKIQEAYLIFQDFS-EKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
.+ ..|-|++.....+.+. +.+|--..+.-.||..-.+.|++.+|.+.|.++.. +.+-|....+.+.+
T Consensus 142 Lv--D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 142 LV--DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred Hh--ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 33 4566888887777754 44555556778889999999999999999998765 44444444454443
No 245
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0037 Score=51.62 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=73.2
Q ss_pred cccHHHHHHHHHHhH--------hhCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFS--------EKYPMTG----------LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~--------~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
.|+|.+|...|++++ +..|.+| .++.++..|+...|+|=++++....+|..+|+|..++|..
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 356777777776643 3456554 5788999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc--HHHHHHHHHhhCCCChhH
Q 022777 247 VVCSLHQGKS--TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 247 ~~~~~~~g~~--a~~~~~~~~~~~P~~~~~ 274 (292)
|......=+. |..-++++++++|.-..+
T Consensus 271 akAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 271 AKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9876655454 889999999999976543
No 246
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.19 E-value=0.055 Score=51.53 Aligned_cols=205 Identities=13% Similarity=0.030 Sum_probs=116.3
Q ss_pred hhhhhhhcc-HHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHH
Q 022777 13 LRNNFYLGA-YQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTI 91 (292)
Q Consensus 13 ~~~~~~~g~-~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~ 91 (292)
+..+|.+|+ |-+||+. ..-..|+.-+...-..+..+...|+++.|+.+|-.++..- .+ ...-.+...+.+|+
T Consensus 680 ale~fkkgdaf~kaiel--arfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-ka----ieaai~akew~kai 752 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIEL--ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-KA----IEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHHHcccHHHHHHHH--HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-HH----HHHHhhhhhhhhhH
Confidence 345566666 6777776 2223465444444456777888899999998886552211 11 11122345677777
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH-
Q 022777 92 SSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT- 170 (292)
Q Consensus 92 ~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~- 170 (292)
..+..+-.+ .....+|-..+.-|...|+++-|.+.|-+.+-.. .-..+|-+.|+++.|-++-.++- .|...
T Consensus 753 ~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~---dai~my~k~~kw~da~kla~e~~--~~e~t~ 824 (1636)
T KOG3616|consen 753 SILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEADLFK---DAIDMYGKAGKWEDAFKLAEECH--GPEATI 824 (1636)
T ss_pred hHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcchhH---HHHHHHhccccHHHHHHHHHHhc--CchhHH
Confidence 777665443 2234566677788888888888888887643221 22345667777777776665552 23222
Q ss_pred HHHHHHHHHHHHh-----------ccccHHHHHHHHHHh------H----hhCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 022777 171 LTQLANAWLNLAV-----------GGSKIQEAYLIFQDF------S----EKYPMT-GLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 171 ~~~l~~a~~~l~~-----------~~~~~~~A~~~~~~~------~----~~~p~~-~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
.+.++.+.-.-.. --|..+.|+.+|++. + +.+|+. .+.+..+|.-+...|+++.|+..
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 2222222110000 013345556666552 1 234443 24667788888888888888888
Q ss_pred HHHH
Q 022777 229 LLDA 232 (292)
Q Consensus 229 ~~~a 232 (292)
|.++
T Consensus 905 flea 908 (1636)
T KOG3616|consen 905 FLEA 908 (1636)
T ss_pred HHhh
Confidence 7765
No 247
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.17 E-value=0.13 Score=44.31 Aligned_cols=163 Identities=11% Similarity=-0.010 Sum_probs=118.1
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhc----CCHHHHHHHhhc---CCchhHHHHHHHHHHh----CCC
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE----EDYNEALKHTNA---GGTMELHALNVQIFLK----MHR 151 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~---~~~~~~~~~~a~~~~~----~~~ 151 (292)
..+++..++..+..+... .++.....++.+|..- .+..+|+.+|+. ...+.+...++.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccC
Confidence 346778888888877543 2236777888877654 358899999987 5778889999998877 558
Q ss_pred hHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHh----cc-ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh----cCC
Q 022777 152 SDYAERQLRAMQQIDEDHT-LTQLANAWLNLAV----GG-SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH----MGN 221 (292)
Q Consensus 152 ~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~----~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~ 221 (292)
..+|...|+++......+. ...+.+++++..- +. .....|+..|.++.... ++.+.+.+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 9999999999998844332 2233333333321 11 12347999999987766 67788889988866 458
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
+.+|...|.++-+... ...+++++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 9999999999998777 88888998 555444
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.11 E-value=0.001 Score=37.98 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALN--KDAKD 239 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 239 (292)
++.++|.++.+.|+|++|+.+|++++. .+|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 478899999999999999999999654 44543
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.07 E-value=0.015 Score=50.73 Aligned_cols=220 Identities=10% Similarity=-0.027 Sum_probs=117.6
Q ss_pred HHHHHHhhCChhHHHHhhhhc----CCc--hHHHHHHHHHhhcCCCChhHHHHH----HHHHhcCCCCCccHHHHHHHHH
Q 022777 46 VYRSYIALGSYQLVISEIDES----AAT--PLQAVKLLALYLSSPDNKESTISS----LKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a----~~~--~~~a~~~la~~~~~~~~~~~A~~~----~~~~l~~~~~p~~~~~~~~la~ 115 (292)
.|.-+...++++.|+..-.+. ++. -...+.-++.....+|++++++.. +.-+...+..----+++..++.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777776443332 111 122333455556666777665442 2222222001112355666677
Q ss_pred HHHhcCCHHHHHHHhhc----CC------chhHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CCcH--HHHHHHHHHHH
Q 022777 116 IFMHEEDYNEALKHTNA----GG------TMELHALNVQIFLKMHRSDYAERQLRAMQQID--EDHT--LTQLANAWLNL 181 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~----~~------~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~--p~~~--~~~l~~a~~~l 181 (292)
.+.+.-++.+++.+... |. --.....++.....++.++++++.|+.+.+.. .+++ .+++.-+.-.+
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 66666667777666543 11 11345556777777888888888888887762 2222 11111111111
Q ss_pred HhccccHHHHHHHHHHhHhhCC----CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHH----HHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYP----MT------GLILNGKAVCCMHMGNFDEAEGLLLDALNK--DAKDPET----LAN 245 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~----~~~ 245 (292)
.....++++|..+..++.+.-. ++ ...++.+++.+..+|++-+|.+..+++.++ .-+|-.+ +.-
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 1112357788777777655321 11 246667788888888888888888877654 2333222 334
Q ss_pred HHHHHHhcCCc--HHHHHHHHH
Q 022777 246 LVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~ 265 (292)
+|-+|...|+. +..-++++.
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 56666666665 555566554
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.03 E-value=0.13 Score=45.47 Aligned_cols=45 Identities=11% Similarity=-0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 207 LILNGKAVCCMHM------GNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 207 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
.++..+|...... +..+++...|++++..+|....+|+.+|..+.
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 4666777777777 89999999999999999999999999887654
No 251
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.012 Score=53.39 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=58.5
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 022777 156 ERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN-FDEAEGLLLDALN 234 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 234 (292)
..+|+.++..-+.+..+++ .|+......+.+.+--.+|.+++..+|++|++|...|.-.+.-|. .+.|..+|.++|+
T Consensus 91 v~lyr~at~rf~~D~~lW~--~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWL--SYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHhcCCCHHHHH--HHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3456666666555543332 244443334446677777777777777777777777777777666 7777777777777
Q ss_pred hCCCCHHHHHHH
Q 022777 235 KDAKDPETLANL 246 (292)
Q Consensus 235 ~~p~~~~~~~~l 246 (292)
.+|++|.+|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 778777776553
No 252
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.91 E-value=0.0016 Score=35.05 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.+++.+|.++..+|++++|+..++++++.+|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999999999999999999999988864
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.85 E-value=0.0018 Score=35.77 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
+.+.+|.++...|++++|...++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45566666666666677776666666666654
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.011 Score=53.52 Aligned_cols=86 Identities=8% Similarity=0.137 Sum_probs=73.8
Q ss_pred HHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-c--HHHHHHHHH
Q 022777 189 QEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK-S--TSRYLNQLK 265 (292)
Q Consensus 189 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~--a~~~~~~~~ 265 (292)
..-..+|+.+...++.|+.+|........+.+.+.+-...|.+++..+|++|++|..-+.-...-+. . ++.++.+.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456688999999999999999999999999999999999999999999999999877764444444 3 889999999
Q ss_pred hhCCCChhH
Q 022777 266 LTHPDHMLV 274 (292)
Q Consensus 266 ~~~P~~~~~ 274 (292)
+.+|++|.+
T Consensus 168 R~npdsp~L 176 (568)
T KOG2396|consen 168 RFNPDSPKL 176 (568)
T ss_pred hcCCCChHH
Confidence 999999963
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0089 Score=51.46 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHhHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 186 SKIQEAYLIFQDFSEKYPM----TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
.+|..|..+|.+.+...-. +...|++.|.|....|+|-.|+....+++..+|.+..+.+.=+.|+..+.+
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3466666666665543211 334566666666666666666666666666666666655555555444443
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.16 Score=45.19 Aligned_cols=94 Identities=18% Similarity=0.066 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--ccHHHHHHHH---HHhH-hh---CCC-CHHHHHHHHHHHHhcCC
Q 022777 152 SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG--SKIQEAYLIF---QDFS-EK---YPM-TGLILNGKAVCCMHMGN 221 (292)
Q Consensus 152 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~--~~~~~A~~~~---~~~~-~~---~p~-~~~~~~~la~~~~~~g~ 221 (292)
.++|+..|+++.+.+|+.. ..+-.+.+....|. ..-.+...+- ..++ +. .+. +-=.+-.++.+..-.|+
T Consensus 242 ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 7888999999988886552 12222222222221 1112222222 2211 21 111 11123445667777999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
+++|++.++++++..|..-.....+
T Consensus 321 ~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 321 YEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred HHHHHHHHHHHhhcCCcchhHHHHH
Confidence 9999999999999987765443333
No 257
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.75 E-value=0.003 Score=35.27 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDED 168 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~ 168 (292)
+++..+|.+|...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45778888899999999999999998888875
No 258
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.74 E-value=0.012 Score=36.78 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
.++.+|..+.++|+|++|.++.+.+|+.+|+|..+..-.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 467788888999999999999999999999988876433
No 259
>PRK10941 hypothetical protein; Provisional
Probab=96.71 E-value=0.025 Score=48.20 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.++++.|+.+.+.++...|++|.-+--.|.++.++|.+..|...++.-++.-|++|++-
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 44566666666666666666666666666666666666666666666666666666543
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.71 E-value=0.43 Score=44.47 Aligned_cols=182 Identities=12% Similarity=-0.013 Sum_probs=135.1
Q ss_pred CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHH
Q 022777 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHAL 141 (292)
Q Consensus 68 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~ 141 (292)
++....|.....+....|+.+...-.+++++.. +....+.|+..+......|+.+-|-..+.+ +..+..+..
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 344556777777777889999999999999987 888999999999999999999999888876 577888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHH---HHHHhHhhCCCC----HHHHHHHHH
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYL---IFQDFSEKYPMT----GLILNGKAV 214 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~---~~~~~~~~~p~~----~~~~~~la~ 214 (292)
-+.+....|+++.|..+|+++.+..|+....-+ .++++...+|..+.+.. .+.... ....+ +..+...+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l--~~~~~e~r~~~~~~~~~~~~l~s~~~-~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVL--RKINWERRKGNLEDANYKNELYSSIY-EGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHH--HHHhHHHHhcchhhhhHHHHHHHHhc-ccccCcchhHHHHHHHHH
Confidence 899999999999999999999987777643333 34454444455666653 222222 12222 234444554
Q ss_pred HH-HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 215 CC-MHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 215 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
.. .-.++.+.|...+.+++...|++...+..+..+....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 43 44788899999999999999999988877776544433
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.69 E-value=0.16 Score=46.64 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=90.6
Q ss_pred HHHHHHHHhhCChhHHHHhhhhc--CCch-HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhc
Q 022777 44 CLVYRSYIALGSYQLVISEIDES--AATP-LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a--~~~~-~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~ 120 (292)
....+..+.+|++++++..++.. .|.- ..-...++.++.++|-.+.|++.. .++...+-| .++.
T Consensus 265 ~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~----------~D~~~rFeL---Al~l 331 (443)
T PF04053_consen 265 ELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV----------TDPDHRFEL---ALQL 331 (443)
T ss_dssp HHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS----------S-HHHHHHH---HHHC
T ss_pred HHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc----------CChHHHhHH---HHhc
Confidence 33456667788998877776532 2211 223456778888888888876542 235566755 4688
Q ss_pred CCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 022777 121 EDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~ 200 (292)
|+.+.|.+..++.++++.|..+|...+.+|+++-|+..+.++-..+ . +.++++..| +.+.=..+...+ .
T Consensus 332 g~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~------~--L~lLy~~~g--~~~~L~kl~~~a-~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS------G--LLLLYSSTG--DREKLSKLAKIA-E 400 (443)
T ss_dssp T-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH------H--HHHHHHHCT---HHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc------c--cHHHHHHhC--CHHHHHHHHHHH-H
Confidence 9999999999888888899999999999999999988887664331 1 122233333 333222222222 2
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 201 KYPMTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 201 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
...+ ++..-.+++.+|+.++.+..+.+
T Consensus 401 ~~~~----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 22334455666777777766655
No 262
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.67 E-value=0.053 Score=40.66 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhc-cccHHHHHHHHHHhHh-hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 170 TLTQLANAWLNLAVG-GSKIQEAYLIFQDFSE-KYPMT-GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~-~~~~~~A~~~~~~~~~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
...++..+|+.+... ..+..+-+.+++++++ .+|+. -+.++.++..+.+.|+|+.|+++....++.+|+|..+..--
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455667778877532 3568889999999986 55653 45778899999999999999999999999999999887544
Q ss_pred HHHHH
Q 022777 247 VVCSL 251 (292)
Q Consensus 247 ~~~~~ 251 (292)
-.+..
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 44433
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.67 E-value=0.1 Score=49.41 Aligned_cols=177 Identities=17% Similarity=0.100 Sum_probs=114.4
Q ss_pred hhHHHHhhhhc-CCchHHHHHHHHHhhcC-----CCChhHHHHHHHHHhc---CCCCCccHHHHHHHHHHHHhcC-----
Q 022777 56 YQLVISEIDES-AATPLQAVKLLALYLSS-----PDNKESTISSLKEWLS---DPAIGSNATLRLIAGIIFMHEE----- 121 (292)
Q Consensus 56 ~~~Al~~~~~a-~~~~~~a~~~la~~~~~-----~~~~~~A~~~~~~~l~---~~~~p~~~~~~~~la~~~~~~g----- 121 (292)
...|..+++.+ .-.+..+...++.++.. ..|.++|+..++.+.. ....-.++.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 34577777766 55666777777777653 2467888888888866 1111224557788888888743
Q ss_pred CHHHHHHHhhc---CCchhHHHHHHHHHHhCC---ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-cccHHHHHHH
Q 022777 122 DYNEALKHTNA---GGTMELHALNVQIFLKMH---RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG-GSKIQEAYLI 194 (292)
Q Consensus 122 ~~~~A~~~~~~---~~~~~~~~~~a~~~~~~~---~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~~A~~~ 194 (292)
++..|+.++.+ -+++++.+.+|.++..-. ++..|...|..+.+..-.....+++..+. +..+ .-+...|+..
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~-~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYE-LGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHH-hCCCcCCCHHHHHHH
Confidence 67789988887 578888888888877665 46788888888877654444445543322 1111 1357889999
Q ss_pred HHHhHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 022777 195 FQDFSEKYPMTGLILNGKAVCCMHM-GNFDEAEGLLLDALNK 235 (292)
Q Consensus 195 ~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 235 (292)
|.++.+..+ +.+...++.++..- +++..+...+...-..
T Consensus 387 ~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 387 YKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 999888773 44344444444332 6666666555554443
No 264
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.64 E-value=0.035 Score=42.43 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=68.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
.....-+..+++++++.++..+--+.|+.....+..+|+.+.. |++.+|+.+|+++.+..|..|...-.+++|+.-+|
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 3344455689999999999999888999988888889988865 56999999999999998888988888999999999
Q ss_pred CHH
Q 022777 221 NFD 223 (292)
Q Consensus 221 ~~~ 223 (292)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 865
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.12 Score=48.93 Aligned_cols=222 Identities=12% Similarity=0.042 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhhC-----ChhHHHHhhhhc-CCchHHHHHHHHHhhcCCC---ChhHHHHHHHHHhcCCCCCccHHHHHH
Q 022777 42 RDCLVYRSYIALG-----SYQLVISEIDES-AATPLQAVKLLALYLSSPD---NKESTISSLKEWLSDPAIGSNATLRLI 112 (292)
Q Consensus 42 a~~~la~~~~~~g-----~~~~Al~~~~~a-~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~p~~~~~~~~ 112 (292)
+.+.+|++|.... ++..|+..+.++ ...+..+...++.++.... |...|..+|..+... +.+.+.+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----CChHHHHH
Confidence 3466888888753 567799999887 5555667778888776433 568999999988754 46888999
Q ss_pred HHHHHHhc----CCHHHHHHHhhc---CCchhHHHHHHHHHHhC-CChHHHHHHHHHHHhhCCCcHHH---HHHHHH-HH
Q 022777 113 AGIIFMHE----EDYNEALKHTNA---GGTMELHALNVQIFLKM-HRSDYAERQLRAMQQIDEDHTLT---QLANAW-LN 180 (292)
Q Consensus 113 la~~~~~~----g~~~~A~~~~~~---~~~~~~~~~~a~~~~~~-~~~~~A~~~l~~~~~~~p~~~~~---~l~~a~-~~ 180 (292)
+|.+|..- .+...|..++.+ .+++.+...++.++..- ++++.+...+....+..-+.... .+.... ..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccc
Confidence 99887632 478899999998 45677667666654443 78888877777666653222111 111000 00
Q ss_pred HHhc--cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-c
Q 022777 181 LAVG--GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM----GNFDEAEGLLLDALNKDAKDPETLANLVVCSLH-Q 253 (292)
Q Consensus 181 l~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~ 253 (292)
+... ..+...++..+.++... .++.+...+|.++..- .++..|...|..+.... ....+|+|.++.+ .
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~ 520 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGE 520 (552)
T ss_pred ccccccccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCc
Confidence 1111 13577788888886554 3466778899988775 45999999999998777 8889999988764 2
Q ss_pred CCc----HHHHHHHHHhhCCCCh
Q 022777 254 GKS----TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 254 g~~----a~~~~~~~~~~~P~~~ 272 (292)
|-. |.+++.++.+.+...-
T Consensus 521 g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 521 GIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred CcchhHHHHHHHHHHHhcCchhh
Confidence 322 7888888876555443
No 266
>PRK10941 hypothetical protein; Provisional
Probab=96.60 E-value=0.017 Score=49.23 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESF 284 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~ 284 (292)
..+.++=.++++.++++.|.+..+..+.+.|+++.-+-..|.+|.+.|.+ |..-++..++..|++|.+..++.....-
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35667888999999999999999999999999999898999999999998 8888999999999999988877666554
Q ss_pred H
Q 022777 285 E 285 (292)
Q Consensus 285 ~ 285 (292)
+
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 4
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.58 E-value=0.0092 Score=50.94 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=60.1
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
.|+.++|..+|.-++...|++|+++..+|......++.-+|...|-+|+.+.|.|.+++.|...
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4779999999999999999999999999999999999999999999999999999999988654
No 268
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.58 E-value=0.013 Score=53.01 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=72.2
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh-HhhCCC--------CHHHHHHHHH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF-SEKYPM--------TGLILNGKAV 214 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~-~~~~p~--------~~~~~~~la~ 214 (292)
..|+++.+..-+....+.+..+..++....+..+..... .|++.+|...+-.. +...|. ...+++++|.
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~--~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA--HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH--hcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 345555556666666665555544554433333332222 24577776655542 222222 2345677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh
Q 022777 215 CCMHMGNFDEAEGLLLDALNK------------------DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
+.+++|.+.-+..+|.+|++. ....-+++||.|..+.+.|++ |-..|.++.+.+-.+|
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 777777777777777777751 122345677777777777777 5555656555554444
No 269
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.6 Score=42.64 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc--------C-------CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC-cH--HH
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA--------G-------GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDED-HT--LT 172 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~--------~-------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~-~~--~~ 172 (292)
.....+-+-.|++.+|+..+.. | ..+..+.++|.-....|.++.|+.++..+.+.-.. +. ..
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455566678999999887764 2 34566778888888999999999999999887432 21 22
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhC--CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 173 QLANAWLNLAVGGSKIQEAYLIFQDFSEKY--PMT-----GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 173 ~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~--p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
++..+-.|+..+ +-..-.++.+.+...+ +-+ ..+++..|...+.+|++.||+..+++.++.. |.+-++.
T Consensus 407 nlnlAi~YL~~~--~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~r 482 (629)
T KOG2300|consen 407 NLNLAISYLRIG--DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNR 482 (629)
T ss_pred HHhHHHHHHHhc--cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHH
Confidence 333344444432 2333333333322221 111 2467788999999999999999999999876 2222222
Q ss_pred --------HHHHHHhcCCc--HHHHH---HHHHhhCCCChhH
Q 022777 246 --------LVVCSLHQGKS--TSRYL---NQLKLTHPDHMLV 274 (292)
Q Consensus 246 --------l~~~~~~~g~~--a~~~~---~~~~~~~P~~~~~ 274 (292)
++.+....|+. +.+.. -++.+.-|++|..
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 44455556654 33332 2333456887753
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.54 E-value=0.0061 Score=35.59 Aligned_cols=29 Identities=34% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
..++++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46889999999999999999999999876
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.52 E-value=0.56 Score=41.88 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhc---------CCchhHHHHHHHHHHh---CCChHHHHHHHHHHHhh-CCCcH--H
Q 022777 107 ATLRLIAGIIFMHEEDYNEALKHTNA---------GGTMELHALNVQIFLK---MHRSDYAERQLRAMQQI-DEDHT--L 171 (292)
Q Consensus 107 ~~~~~~la~~~~~~g~~~~A~~~~~~---------~~~~~~~~~~a~~~~~---~~~~~~A~~~l~~~~~~-~p~~~--~ 171 (292)
++....+=..|....+|+.=++..+. +..+......|.++-+ .|+.++|+.++..++.. .+.++ .
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 44444554567788888877777665 2455666777888888 88889999888885543 22222 2
Q ss_pred HHHHHHHHHHH-----hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hh---
Q 022777 172 TQLANAWLNLA-----VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL--------NK--- 235 (292)
Q Consensus 172 ~~l~~a~~~l~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~--- 235 (292)
...+..|--+. .+....++|+..|.++.+..|+ .-.=.+++.++.-.|+-.+...-++++. +.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 22222222111 1234589999999999998865 3334567777877787555544344433 11
Q ss_pred -CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHHHH
Q 022777 236 -DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFERA 287 (292)
Q Consensus 236 -~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 287 (292)
.-.+......+..+..-.|+. +....+++.+..|......++.....=+..+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 112333345566666777887 8999999999999988877776555444433
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.3 Score=40.65 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHhHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhc
Q 022777 186 SKIQEAYLIFQDFSEKYPM------TGLILNGKAVCCMHMGNFDEAEGLLLDALNK------DAKDPETLANLVVCSLHQ 253 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 253 (292)
.+.++|+.+|++.+....+ -.+.+...+.++.+..++.+|-..+.+-... .|.-.......+.+++..
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 3477777777776543221 2356777889999999999988777764332 233222333444445554
Q ss_pred CCc--HHHHHHH
Q 022777 254 GKS--TSRYLNQ 263 (292)
Q Consensus 254 g~~--a~~~~~~ 263 (292)
.++ +.+.++.
T Consensus 204 ~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 204 HDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHHhcc
Confidence 455 5555544
No 273
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.49 E-value=0.0011 Score=57.10 Aligned_cols=91 Identities=18% Similarity=-0.004 Sum_probs=57.0
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 225 (292)
.+..|.++.|+.++..++.++|.+....--.+.+.+ ..++...|+.-+..+++.+|++..-|-..|.....+|+|.+|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l--kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL--KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceee--eccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 345667777777777777777766433222222222 223466677777777777777777677777777777777777
Q ss_pred HHHHHHHHhhCCC
Q 022777 226 EGLLLDALNKDAK 238 (292)
Q Consensus 226 ~~~~~~al~~~p~ 238 (292)
...++.+++++=+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 7777777766543
No 274
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.46 E-value=0.59 Score=43.21 Aligned_cols=181 Identities=11% Similarity=0.049 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCC---HHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED---YNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAER 157 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~ 157 (292)
.+++..+|+..+... .-.+.-.++.++.--...-+ ++.--+.+++ .+.+-++...-..-.+..-...|..
T Consensus 309 t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 577778888776531 22244444444432111111 2222222222 1111122223333345556788899
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 022777 158 QLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK-- 235 (292)
Q Consensus 158 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 235 (292)
++.++-+.........++-|++-.++ .++..=|+.+|+-.+..+|++|.+.......+...|+-..+...|++++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99888765322222334444443333 356888999999999999999999999999999999999999999999987
Q ss_pred CCCC-HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCC
Q 022777 236 DAKD-PETLANLVVCSLHQGKS--TSRYLNQLKLTHP 269 (292)
Q Consensus 236 ~p~~-~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P 269 (292)
.|+- .++|-.+...-..-|+. ..++-++-....|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 4442 35676666666677776 5566555555555
No 275
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.015 Score=52.55 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CC---chh-----HHHHHHHHHHhCCChHHH
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GG---TME-----LHALNVQIFLKMHRSDYA 155 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~---~~~-----~~~~~a~~~~~~~~~~~A 155 (292)
+....+.++.. ..+.+.+.+..++.+...|++.+|.+.+.. +. .++ .+..+|-|.+++|.+.-+
T Consensus 225 ~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~ 302 (696)
T KOG2471|consen 225 AKREVKHVMNI--AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQAS 302 (696)
T ss_pred HHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHH
Confidence 33333444443 455667777777777777777777777754 11 222 134566677777777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 156 ERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSE-KYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
...|.++++. .-.++. .| +.. .++.. ....+-++++++|..+...|+.-.|-+-|.++..
T Consensus 303 ~~~F~kAL~N----~c~qL~-------~g---~~~-----~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 303 SVLFLKALRN----SCSQLR-------NG---LKP-----AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred HHHHHHHHHH----HHHHHh-------cc---CCC-----CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 7777777651 000111 00 000 00000 0112346777788888888888888888888877
Q ss_pred hCCCCHHHHHHHHHHH
Q 022777 235 KDAKDPETLANLVVCS 250 (292)
Q Consensus 235 ~~p~~~~~~~~l~~~~ 250 (292)
..-.||.+|..++.|-
T Consensus 364 vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECC 379 (696)
T ss_pred HHhcCcHHHHHHHHHH
Confidence 7777777777777653
No 276
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.43 E-value=0.16 Score=45.39 Aligned_cols=106 Identities=12% Similarity=-0.089 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC-C----CHHHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQIDED-HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP-M----TGLILNGK 212 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p-~----~~~~~~~l 212 (292)
.....+.+.+.|-+.-|.+..+-++.++|. ++..-+...-.+.. ..++++=-+.+++....... + -|-+-+..
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL-rs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL-RSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH-hcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 444567888999999999999999999998 54332222222222 22446666666666443211 1 23466788
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHHhhCCCCHHHHHH
Q 022777 213 AVCCMHMGNF---------------DEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 213 a~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
+.++...++. ++|...+++|+...|.-...+..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888889888 89999999999988875444433
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.36 Score=38.08 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHhhCChhHHHHhhhhc-----CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHhcC
Q 022777 49 SYIALGSYQLVISEIDES-----AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN--ATLRLIAGIIFMHEE 121 (292)
Q Consensus 49 ~~~~~g~~~~Al~~~~~a-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~--~~~~~~la~~~~~~g 121 (292)
-+.+.|+.++|+..|... ..-...+....+.+....|+...|+..|.++-.....|.- ..+++.-|-+++..|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 344456666666555433 1222445555566666666666666666666555333331 234455555566666
Q ss_pred CHHHHHHHhhc---CCch---hHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 122 DYNEALKHTNA---GGTM---ELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 122 ~~~~A~~~~~~---~~~~---~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
-|++-...++. +.++ -+.-.++..-.+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66655554443 1121 2333445555566666666666655544
No 278
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.019 Score=44.02 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
.+...++..+...|++++|+..+++ |.+..++..+..+|...|+..+|+..|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445555666666666666666665 55555666666666666666666666666543
No 279
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.31 E-value=0.45 Score=41.84 Aligned_cols=104 Identities=8% Similarity=-0.037 Sum_probs=69.6
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHhHhh-------C--
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA-VGGSKIQEAYLIFQDFSEK-------Y-- 202 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~-~~~~~~~~A~~~~~~~~~~-------~-- 202 (292)
|++...+..+..+..+....++..+.+++++..+|++..++.....+... ...-.+.+....|.+++.. .
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~ 141 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT 141 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc
Confidence 66666666666677777788888888889988888887665553222111 1123356666666664431 1
Q ss_pred --CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 203 --PM-------TGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 203 --p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
++ -..++..+...+.+.|..+.|+..++-.++.+
T Consensus 142 ~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 142 SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00 12467777888899999999999999999885
No 280
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.30 E-value=0.015 Score=49.76 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~ 275 (292)
.|.-..+.|+.++|...|+.|+.+.|++++++..+|.+....++. |..++-+++.+.|.|...+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 344456789999999999999999999999999999988776555 8888889999999998644
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.30 E-value=0.79 Score=41.57 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------------------
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------------------ 132 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------ 132 (292)
.+.|+....++...+|.+.|+.+....... +|. ..+.++..|...++.+.-..+|++
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s 376 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESAS 376 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhc
Confidence 334555555555566777777776665544 443 667777777776666655555553
Q ss_pred --CCc----hhHHHHHH-----------HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q 022777 133 --GGT----MELHALNV-----------QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIF 195 (292)
Q Consensus 133 --~~~----~~~~~~~a-----------~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~ 195 (292)
.++ ++..+..- ..-.+..-.+.|.+++-++-+..--.....+..|++-.. ..+++.-|..+|
T Consensus 377 ~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~if 455 (660)
T COG5107 377 KVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIF 455 (660)
T ss_pred cccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHH
Confidence 011 22222111 111233345666666666654431111122333333222 235678888899
Q ss_pred HHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCC
Q 022777 196 QDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD--PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 196 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~ 271 (292)
.-.+..+|+++.+....-..+...|+-..|...|+.++..-.+. ..++--+...-...|.. +..+-++..+..|..
T Consensus 456 elGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 456 ELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 99889999999888888888899999999999999887654443 34444455444556765 666777777788887
Q ss_pred hhHHhH
Q 022777 272 MLVKRA 277 (292)
Q Consensus 272 ~~~~~~ 277 (292)
..+.-+
T Consensus 536 n~~evF 541 (660)
T COG5107 536 NLIEVF 541 (660)
T ss_pred hHHHHH
Confidence 665544
No 282
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.64 Score=39.13 Aligned_cols=161 Identities=10% Similarity=0.026 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC-CHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChH-HHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE-DYNEALKHTNA-----GGTMELHALNVQIFLKMHRSD-YAERQL 159 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~-~A~~~l 159 (292)
-..|++.-..++.. +|.|-.++...=.++...+ +..+=+++++. |.+-+.+..+-.+....|++. .-+...
T Consensus 59 S~RAl~LT~d~i~l--NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 59 SPRALQLTEDAIRL--NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred CHHHHHHHHHHHHh--CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 34555555555555 5555555444333333332 33444444443 344444444444444555555 555556
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh-cC-----CHHHHHHHHHHHH
Q 022777 160 RAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH-MG-----NFDEAEGLLLDAL 233 (292)
Q Consensus 160 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al 233 (292)
+.++..+..+...+-...|+...++. +++-+....++++.+--|-.+|+..-.+... .| ..+.=+.+..+.+
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 66666555554444444444333322 5565666666665544444344433322222 11 1222234455555
Q ss_pred hhCCCCHHHHHHHHHHHH
Q 022777 234 NKDAKDPETLANLVVCSL 251 (292)
Q Consensus 234 ~~~p~~~~~~~~l~~~~~ 251 (292)
.+.|+|..+|..|..++.
T Consensus 215 ~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HhCCCCccHHHHHHHHHH
Confidence 666666666655555554
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.18 Score=47.83 Aligned_cols=170 Identities=11% Similarity=0.008 Sum_probs=106.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-CCchhH------------HHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-GGTMEL------------HALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~------------~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
+|. +..|..+|...+..-..+-|...|-+ .+.+.. -...+.+-.--|+|++|++.|-.+=++ +
T Consensus 689 nPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr---D 764 (1189)
T KOG2041|consen 689 NPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---D 764 (1189)
T ss_pred CCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---h
Confidence 564 78888899888888888888888766 222221 123355556678999999988555222 2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 170 TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
++ +.++...|++-..+++++.......+ --+++.++|.....+..|++|.++|.+- .+. -+++
T Consensus 765 ----LA---ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~-----~~~---e~~~ 829 (1189)
T KOG2041|consen 765 ----LA---IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC-----GDT---ENQI 829 (1189)
T ss_pred ----hh---HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cch---HhHH
Confidence 12 23333445677777777664433322 2368999999999999999999999873 222 3455
Q ss_pred HHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhc
Q 022777 248 VCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSV 291 (292)
Q Consensus 248 ~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 291 (292)
.++.....+ ...+...+-+..|--|.+.++...-++-|.|++-|
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 566555555 33333333333333356667777777777777643
No 284
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.09 E-value=0.85 Score=40.11 Aligned_cols=175 Identities=10% Similarity=-0.022 Sum_probs=105.6
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH
Q 022777 92 SSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL 171 (292)
Q Consensus 92 ~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 171 (292)
..+.+.++. +|+++..+..+....-..-. ..... . ... ..-.+.-+.+|+++++.+|++..
T Consensus 6 ~el~~~v~~--~P~di~~Wl~li~~Qd~~~~-------~~~~~-~--~~~-------~a~~E~klsilerAL~~np~~~~ 66 (321)
T PF08424_consen 6 AELNRRVRE--NPHDIEAWLELIEFQDELFR-------LQSSS-K--AER-------RALAERKLSILERALKHNPDSER 66 (321)
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHhcc-------ccccc-h--hhH-------HHHHHHHHHHHHHHHHhCCCCHH
Confidence 456777777 89999999888754322211 11000 0 001 11135667889999999999876
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCC---C------
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH---MGNFDEAEGLLLDALNKDAK---D------ 239 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~---~------ 239 (292)
+.+. ++.........++....+++++..+|+++.+|..+-..... .-.+.+-...|.+.+..-+. .
T Consensus 67 L~l~--~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~ 144 (321)
T PF08424_consen 67 LLLG--YLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHP 144 (321)
T ss_pred HHHH--HHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 5555 33333333456777888999999999999887555443333 23567778888877764211 1
Q ss_pred ---------HHHHHHHHHHHHhcCCc--HHHHHHHHHhhC---CCChhHHhHHhhHHHHHHH
Q 022777 240 ---------PETLANLVVCSLHQGKS--TSRYLNQLKLTH---PDHMLVKRASSGDESFERA 287 (292)
Q Consensus 240 ---------~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~---P~~~~~~~~~~~~~~~~~~ 287 (292)
..+..++.....+.|.. |...++.+++.+ |.+............|+++
T Consensus 145 ~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~F 206 (321)
T PF08424_consen 145 DLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEF 206 (321)
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 11123344455677876 999999999975 5544433333444555443
No 285
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.08 E-value=0.024 Score=35.36 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHH
Q 022777 241 ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDE 282 (292)
Q Consensus 241 ~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~ 282 (292)
+.+|.++..+.+.|++ |.++.+.+++..|+|..+..+...-+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4678899999999999 99999999999999999998876543
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.01 E-value=0.047 Score=38.33 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----C--CchhHHHHHHHHHHhCCChH
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----G--GTMELHALNVQIFLKMHRSD 153 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~--~~~~~~~~~a~~~~~~~~~~ 153 (292)
+..+++.+.. +|++..+.+.+|..+...|++++|++.+-. + .+..+...+..++...|.-+
T Consensus 8 ~~al~~~~a~--~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAA--NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4455666666 788888888888888888888888887765 1 22334444444444444433
No 287
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.00 E-value=1.4 Score=41.28 Aligned_cols=177 Identities=10% Similarity=0.012 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhcCCc---hHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDESAAT---PLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFM 118 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~ 118 (292)
.+......-+..|+++.+...+++++-| ..+.|...+......|+.+-+-.++....+.. .|..+...+.-+..-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHH
Confidence 3333445567899999999999998322 36778888888887888887776666665543 6888888888899888
Q ss_pred hcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHH---HHHHHHhh--CCCcH-HHHHHHHHHHHHhcccc
Q 022777 119 HEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAER---QLRAMQQI--DEDHT-LTQLANAWLNLAVGGSK 187 (292)
Q Consensus 119 ~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~---~l~~~~~~--~p~~~-~~~l~~a~~~l~~~~~~ 187 (292)
..|++..|...|++ |+..++....+....+.|+.+.+-. .+.....- ++.-. ...+-.++..... .++
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i-~~d 456 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI-RED 456 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH-hcC
Confidence 99999999999987 6777888888888999999999884 33333222 11111 1112223332222 356
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
.+.|..++.++.+..|++...+..+-.+.....
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 999999999999999999988888877766655
No 288
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.26 Score=42.78 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=44.7
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcC-CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhC
Q 022777 77 LALYLSSPDNKESTISSLKEWLSD-PAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKM 149 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~-~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~ 149 (292)
-|.-+....++..|+..|.+-++. +.+|+ |...|...|.+.+..|+|-.|+.-+.+ |.+..+++.-+.+++..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 333333334455555555554443 11233 444455555555555555555555544 45555555555555555
Q ss_pred CChHHHHHHHHHHHhhC
Q 022777 150 HRSDYAERQLRAMQQID 166 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~~ 166 (292)
+++++|...+++.+.++
T Consensus 167 e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 55555555555554443
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.98 E-value=0.32 Score=39.27 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---------CCchhHHHHHHHHHHhCCChHHH
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---------GGTMELHALNVQIFLKMHRSDYA 155 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A 155 (292)
.|...|-++-..+ .-++++..+.+|..|. ..+.++|+..|-+ .-+++...-++.++.++|+++.|
T Consensus 124 ~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455554443321 2235566666665443 4455555555544 12455555566666666665555
No 290
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=2.1 Score=42.83 Aligned_cols=198 Identities=10% Similarity=-0.028 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhc
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~ 120 (292)
+.+..+|.+..+.|...+|++.|-+++.|. .+......-.+.|.+++-+..+.-+-+..-+|. .-..|--.|.+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikadDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKADDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcCCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHh
Confidence 455667777777777777777776663332 223334444455666665554432222111222 111112223444
Q ss_pred CCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhH-
Q 022777 121 EDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFS- 199 (292)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~- 199 (292)
++..+-.+.+..|+. .-....|.-++..|.++.|.-.|..+-.. ..++...+++ |.|+.|.+.-+++-
T Consensus 1180 ~rl~elE~fi~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN~------a~La~TLV~L----geyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1180 NRLTELEEFIAGPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSNF------AKLASTLVYL----GEYQGAVDAARKANS 1248 (1666)
T ss_pred chHHHHHHHhcCCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhhH------HHHHHHHHHH----HHHHHHHHHhhhccc
Confidence 544444333332221 11222333344444444444444333211 1222222222 12333333322221
Q ss_pred --------------------hhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 200 --------------------EKYP----MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 200 --------------------~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
+... -.++-+-.+-..|...|-+++-+..++.++-+...+-.....++.+|.+..
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 1111 123334556678889999999999999999999998888888998887654
No 291
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.91 E-value=1.4 Score=40.80 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=103.5
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCC--------------HHHHHHHhhcC------CchhHHHHHHH---HHHhC
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGIIFMHEED--------------YNEALKHTNAG------GTMELHALNVQ---IFLKM 149 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~------~~~~~~~~~a~---~~~~~ 149 (292)
.|++++-. -+-.++.|+-.+.-+...++ .+++.++|++. .+...+..++. .-..-
T Consensus 267 ayeQ~ll~--l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~ 344 (656)
T KOG1914|consen 267 AYEQCLLY--LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDD 344 (656)
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccc
Confidence 34444433 35556677666665555555 66777777762 11112222222 11122
Q ss_pred CChHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH-HHhcCCHHHH
Q 022777 150 HRSDYAERQLRAMQQI---DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC-CMHMGNFDEA 225 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~~~A 225 (292)
++.+..-.++.+++.+ +|+-....+. +.-...+-...|+.+|.++-+..-..-.++..-|.+ +..+++..-|
T Consensus 345 n~~~~~~~~~~~ll~~~~~~~tLv~~~~m----n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A 420 (656)
T KOG1914|consen 345 NKEKKVHEIYNKLLKIEDIDLTLVYCQYM----NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA 420 (656)
T ss_pred chhhhhHHHHHHHHhhhccCCceehhHHH----HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence 3455666677777765 3332222222 221111228889999999876432222334333333 3458999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 226 EGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
.++|+-.++..++.|.........+...++. ++.+|++++..
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999999999888888888888887 99999999876
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.89 E-value=0.37 Score=42.54 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc---CC------chhHHHHHHHHHHhCCChHHHHHHHHHHHhh--CCC----
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA---GG------TMELHALNVQIFLKMHRSDYAERQLRAMQQI--DED---- 168 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~------~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~p~---- 168 (292)
......+...+.+..+.|+++.|...+.+ .. .+......+.++...|+..+|+..+++.+.. .+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34667889999999999999999999887 12 6788888999999999999999999999882 111
Q ss_pred ----------------------c-HHHHHHHHHHHH-----Hh----ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 169 ----------------------H-TLTQLANAWLNL-----AV----GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 169 ----------------------~-~~~~l~~a~~~l-----~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
. .....+.++..+ .. +.+..+++...|++++..+|+...++...|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0 011122222211 12 336789999999999999999999998888877
Q ss_pred Hhc
Q 022777 217 MHM 219 (292)
Q Consensus 217 ~~~ 219 (292)
...
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 554
No 293
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.88 E-value=0.79 Score=39.02 Aligned_cols=135 Identities=17% Similarity=0.107 Sum_probs=64.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHH--HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHAL--NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNL 181 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 181 (292)
-+++..+..+|..+.+.|++.+|...|-..++++.... +.......| .|......++.+-+..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQY 151 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHH
Confidence 45899999999999999999999998877655544332 211111122 2333233333332222
Q ss_pred HhccccHHHHHHHHHHhHhh----C----------CCCHHHHHHH--HHHHHhcCCHH---HHHHHHHHHHhhCCCCHHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEK----Y----------PMTGLILNGK--AVCCMHMGNFD---EAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~----~----------p~~~~~~~~l--a~~~~~~g~~~---~A~~~~~~al~~~p~~~~~ 242 (292)
.. .++...|...+....+. + |.+.+.++-+ -..-++.++.+ .-.+.|+..|+.+|.....
T Consensus 152 L~-l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~ 230 (260)
T PF04190_consen 152 LC-LGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEY 230 (260)
T ss_dssp HH-TTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHH
T ss_pred HH-hcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHH
Confidence 21 23466666555544333 2 2222222222 22223334333 3345556666677777777
Q ss_pred HHHHHHHHHhcC
Q 022777 243 LANLVVCSLHQG 254 (292)
Q Consensus 243 ~~~l~~~~~~~g 254 (292)
+-.+|..|....
T Consensus 231 L~~IG~~yFgi~ 242 (260)
T PF04190_consen 231 LDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHH---
T ss_pred HHHHHHHHCCCC
Confidence 777787776543
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.79 E-value=0.046 Score=50.66 Aligned_cols=102 Identities=19% Similarity=0.072 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHHhHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
|+...|..++..++...|. +...+.++|.++.+.|-..+|-..+.+++.++-..|-..+-+|..+....+. |++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 6788999999998887775 3346789999999999999999999999999988888889999988888776 999999
Q ss_pred HHHhhCCCChhHHhH--HhhHHHHHHH
Q 022777 263 QLKLTHPDHMLVKRA--SSGDESFERA 287 (292)
Q Consensus 263 ~~~~~~P~~~~~~~~--~~~~~~~~~~ 287 (292)
++.+.+|++|.+..- +..+.+|--+
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~c~~~~~~ 727 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIRCMQFYPF 727 (886)
T ss_pred HHHhcCCCChhhHHHHHHHHHhhhhhH
Confidence 999999999998764 3334444333
No 295
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.76 E-value=0.005 Score=53.18 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
|.++.|++.|..++.++|.+..++...+.++.+++++..|++.+..++.++|+...-+--.+.....+|++ +.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555555554443333333333334444 3444444
Q ss_pred HHh
Q 022777 264 LKL 266 (292)
Q Consensus 264 ~~~ 266 (292)
+.+
T Consensus 208 a~k 210 (377)
T KOG1308|consen 208 ACK 210 (377)
T ss_pred HHh
Confidence 443
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.67 E-value=0.15 Score=40.73 Aligned_cols=61 Identities=11% Similarity=-0.022 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 72 QAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 72 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
.++..++.++...||.+.|++.|.++...++.|+ -.+..+.+-++.+..|++......+.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455566666666666666666666555533333 234445555555555665555555444
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.38 Score=44.79 Aligned_cols=138 Identities=16% Similarity=-0.050 Sum_probs=91.7
Q ss_pred HHhcCCHHHHHHHhhc-----CCchhHHHH--HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHH
Q 022777 117 FMHEEDYNEALKHTNA-----GGTMELHAL--NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQ 189 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~-----~~~~~~~~~--~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~ 189 (292)
+.-.|...-++..+.. +.+++.... ++..+...+....+.-.++.++..+|++......++....+. |..-
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~--~~~~ 118 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD--GLQF 118 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh--hhHH
Confidence 3334444445555554 345554332 355566677777788888888888888875555544433332 3344
Q ss_pred HHHHHHHH-hHhhCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 190 EAYLIFQD-FSEKYPMTGLILNGK------AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 190 ~A~~~~~~-~~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
.+...+.. .....|++..+..-+ |..+..+|+..++...++++..+.|.++.+.-.+.........+
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 119 LALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 55555555 666788888776666 88888889999999999999999999888777777766555554
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.62 E-value=0.27 Score=36.97 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 205 TGLILNGKAVCCMHMGN---FDEAEGLLLDALN-KDAKD-PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~~-~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+..-.++++|++.+..+ .++.+..++..++ -.|.. -+.+|.++.-..+.|++ +.++.+.+++..|+|+.+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45678999999998765 5568899999996 44443 35678889888899998 999999999999999999887
Q ss_pred HhhH
Q 022777 278 SSGD 281 (292)
Q Consensus 278 ~~~~ 281 (292)
...-
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 6543
No 299
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.59 E-value=0.02 Score=46.89 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=53.7
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
.+.++.+.|.+.|.+++..-|+....|+.+|....+.|+++.|.+.|+++++++|.+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567888999999999999999999999999999999999999999999999998754
No 300
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.50 E-value=0.29 Score=46.09 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHHHHhhCChhHHHHhhhhcCC--chHHH-----HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 022777 44 CLVYRSYIALGSYQLVISEIDESAA--TPLQA-----VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGII 116 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al~~~~~a~~--~~~~a-----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~ 116 (292)
+.+|....-.|++.+|-..|++... ...+- ++.++.-+...|+-++-....++-.. ...+..---.-|.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEm 712 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD---WARNIKEPKAAAEM 712 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH---HhhhcCCcHHHHHH
Confidence 4456666667777777766665511 11111 22233333333333222222221111 11111111234566
Q ss_pred HHhcCCHHHHHHHhhcCCch---------------hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 022777 117 FMHEEDYNEALKHTNAGGTM---------------ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNL 181 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 181 (292)
+...|+.++|+.+.-..+-. +.....+.-+.....+.-|.+++.++-.. ...+.+
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVql 782 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQL 782 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhh
Confidence 66777777777766542222 22233333333444444444444333111 111223
Q ss_pred HhccccHHHHHHHHHHhHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMT-GLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
..+.+++++|+.+-++ +|+- +++++..|..+.+..++.||.+.|.+|
T Consensus 783 Hve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3344678888866554 4442 346777888877777777777777655
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.46 E-value=0.029 Score=31.83 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..+|.+|..+|++++|+..|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777777777777777777775543
No 302
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.44 E-value=0.35 Score=44.41 Aligned_cols=134 Identities=9% Similarity=0.054 Sum_probs=84.8
Q ss_pred hhhhhhhccHHHHHhh-c--cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhH
Q 022777 13 LRNNFYLGAYQAAINN-S--DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~-~--~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
-+.....|+++.+... . ++...-|. +-...+++.+..+|-.+.|+...+ +....+.||- ..|+.+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~---~~~~~i~~fL~~~G~~e~AL~~~~-----D~~~rFeLAl---~lg~L~~ 336 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPK---DQGQSIARFLEKKGYPELALQFVT-----DPDHRFELAL---QLGNLDI 336 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--H---HHHHHHHHHHHHTT-HHHHHHHSS------HHHHHHHHH---HCT-HHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCCh---hHHHHHHHHHHHCCCHHHHHhhcC-----ChHHHhHHHH---hcCCHHH
Confidence 3455667899997655 2 24432333 234567888889999999997763 2234455552 4589888
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDE 167 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p 167 (292)
|.+.. . ..+++.-|-.||...+.+|+++-|.++|.+..+.+ .+..+|...|+.+.-.++.+.+.....
T Consensus 337 A~~~a----~---~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~---~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 337 ALEIA----K---ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS---GLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHC----C---CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH---HHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHH----H---hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc---ccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 85553 2 34578899999999999999999999999976644 444567788988777666666554443
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.35 E-value=0.54 Score=44.84 Aligned_cols=162 Identities=15% Similarity=0.012 Sum_probs=78.4
Q ss_pred HHHhhCChhHHHHhhhhc--C---CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCH
Q 022777 49 SYIALGSYQLVISEIDES--A---ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDY 123 (292)
Q Consensus 49 ~~~~~g~~~~Al~~~~~a--~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~ 123 (292)
.+..+|++-.+...++.. + .....++..++..+.....+++|.++|...-.. ..+..++.+...+
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~le~f 838 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYRLELF 838 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHHHHhh
Confidence 345556666666665543 1 112445666666655445566666666543111 2233444444555
Q ss_pred HHHHHHhhc-CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhC
Q 022777 124 NEALKHTNA-GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY 202 (292)
Q Consensus 124 ~~A~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~ 202 (292)
++-....+. |++.+..-.+++++...|-.++|.+.+-+. ..|... +.......++.+|.++-++.. -
T Consensus 839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~--s~pkaA--------v~tCv~LnQW~~avelaq~~~--l 906 (1189)
T KOG2041|consen 839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR--SLPKAA--------VHTCVELNQWGEAVELAQRFQ--L 906 (1189)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc--cCcHHH--------HHHHHHHHHHHHHHHHHHhcc--c
Confidence 544444444 555555556666666666666666554222 122211 011111123556655544421 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 203 PMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 203 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
|+--.+.-..+.-+...++..+|++..+++
T Consensus 907 ~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 907 PQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred hhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 222223333455556667777777777665
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.22 E-value=1.7 Score=36.95 Aligned_cols=243 Identities=17% Similarity=0.225 Sum_probs=133.5
Q ss_pred ccHHHHHhhc-cCCCCCCc---hHHHHHHHHHHHHHhhCChhHHHHhhhhc---------CCchHHHHHHHHHhhcCCCC
Q 022777 20 GAYQAAINNS-DLTNLPPD---DAVERDCLVYRSYIALGSYQLVISEIDES---------AATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 20 g~~~~Ai~~~-~~~~~~p~---~~~~a~~~la~~~~~~g~~~~Al~~~~~a---------~~~~~~a~~~la~~~~~~~~ 86 (292)
...++|+..+ +++++.|+ ....++--+..++.++|++.+.+..+++. .+-...+...+-.+-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3677888774 36665554 23444555667888999998877766542 11111122222222111111
Q ss_pred -------hhHHHHHHHHHhcCCCCCccHHHH----HHHHHHHHhcCCHHHHHHHhhc---------C--------CchhH
Q 022777 87 -------KESTISSLKEWLSDPAIGSNATLR----LIAGIIFMHEEDYNEALKHTNA---------G--------GTMEL 138 (292)
Q Consensus 87 -------~~~A~~~~~~~l~~~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~---------~--------~~~~~ 138 (292)
++..+..++. ..|...| ..+|.+|+..|.|-+-.+++.+ + .-.+.
T Consensus 121 m~LLQ~FYeTTL~ALkd-------AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKD-------AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hHHHHHHHHHHHHHHHh-------hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 1222222222 3333333 4689999999988877777664 1 23456
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhC---CCcHHHH-HHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CH-----H
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQID---EDHTLTQ-LANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TG-----L 207 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~---p~~~~~~-l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~-----~ 207 (292)
+.+-.++|-.+++..+-..+|++++.+. |.+.... +-.+--.+....|++.+|-.-|-++.+...+ +| -
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHH
Confidence 7777899999999999999999988763 4442211 1111001112246788887777777665433 22 3
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHhcCCc-HHHHHHHHHhhCCCChhHHhH
Q 022777 208 ILNGKAVCCMHMG----NFDEAEGLLLDALNKDAKDPETL--ANLVVCSLHQGKS-TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 208 ~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~ 277 (292)
-|..+|..+++.| +-++|. -..++|+++ .|+...|....-. ..+.++.-...-.++|.+...
T Consensus 274 KYLVLANMLmkS~iNPFDsQEAK--------PyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh 342 (440)
T KOG1464|consen 274 KYLVLANMLMKSGINPFDSQEAK--------PYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREH 342 (440)
T ss_pred HHHHHHHHHHHcCCCCCcccccC--------CCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHHH
Confidence 4566788888876 333332 235677765 4555555432211 333443333344666776654
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.17 E-value=0.04 Score=29.09 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCC
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDED 168 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~ 168 (292)
++..+|.++..+|++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556677777777777777777777766664
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.15 E-value=0.41 Score=34.74 Aligned_cols=93 Identities=10% Similarity=-0.030 Sum_probs=51.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHh--ccc-------cHHHHHHHHHHhHhhCCCCHHHHH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAV--GGS-------KIQEAYLIFQDFSEKYPMTGLILN 210 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~--~~~-------~~~~A~~~~~~~~~~~p~~~~~~~ 210 (292)
+.-++..|+.-+|+++++..+..++++. .....++.+.... ..+ -.--++++|.+.....|+.+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 3445666666777777777666655443 2222222221111 000 023456677777777777766666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
.+|.=+-...-|+++..--+++|..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666666666666666666666653
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.14 E-value=1.9 Score=37.07 Aligned_cols=215 Identities=19% Similarity=0.127 Sum_probs=115.1
Q ss_pred hhhccHHHHHhh-cc---CC-CCCCch---HHHHHHHHHHHHHhhC-ChhHHHHhhhhc------------CCch-----
Q 022777 17 FYLGAYQAAINN-SD---LT-NLPPDD---AVERDCLVYRSYIALG-SYQLVISEIDES------------AATP----- 70 (292)
Q Consensus 17 ~~~g~~~~Ai~~-~~---~~-~~~p~~---~~~a~~~la~~~~~~g-~~~~Al~~~~~a------------~~~~----- 70 (292)
-.+|+++.|.-. .+ .. ..+|+. -....|..|......+ ++++|..+++++ ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356777777766 32 23 445652 1233444567778888 999998888765 1111
Q ss_pred HHHHHHHHHhhcCCCCh---hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHH--
Q 022777 71 LQAVKLLALYLSSPDNK---ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHAL-- 141 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~---~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~-- 141 (292)
...++.++..+...+.. ++|..++..+-.. .|+.+..+...=.++.+.++.+.+.+.+.+ .+.++....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 22355677777765553 4555555555444 677677765555666667788888887776 222222111
Q ss_pred HHHH-HHhCCChHHHHHHHHHHHhh--CCCcH--HHHHHHHHHHHHhcc------ccHHHHHHHHHHhHhh--CCCCH--
Q 022777 142 NVQI-FLKMHRSDYAERQLRAMQQI--DEDHT--LTQLANAWLNLAVGG------SKIQEAYLIFQDFSEK--YPMTG-- 206 (292)
Q Consensus 142 ~a~~-~~~~~~~~~A~~~l~~~~~~--~p~~~--~~~l~~a~~~l~~~~------~~~~~A~~~~~~~~~~--~p~~~-- 206 (292)
+..+ ......+..+...+..++.. .|... ........+.+.+.. ++++....++..+... .|-++
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 1111 12334455666666666543 33321 111111112222211 2244444444432221 22222
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022777 207 -----LILNGKAVCCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 207 -----~~~~~la~~~~~~g~~~~A~~~~~~al 233 (292)
.++.+.|.-..+.++|++|...|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 345566888888888888888888665
No 308
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.07 E-value=0.2 Score=46.65 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=77.9
Q ss_pred hCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 224 (292)
.+|+...|.+.+..++...|... ..+++. +.+.. +-..+|-.++.+.+...-..|-.++.+|.++..+.+.++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~--~~~~~--~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLAN--LLIHY--GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHH--HHHHh--hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 46999999999999998877653 334443 23332 347788888888888777778889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 225 AEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
|++.|++|+.++|+++.....+-.+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999887665443
No 309
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=1 Score=41.16 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=113.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcCC-CCCc-------cHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchh----HHH
Q 022777 77 LALYLSSPDNKESTISSLKEWLSDP-AIGS-------NATLRLIAGIIFMHEEDYNEALKHTNA----GGTME----LHA 140 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~~-~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~----~~~ 140 (292)
++.+-.-.|++.+|++.+.++..-. -.|. .+....++|.-...-|-++.|...|.. ..+.+ +..
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344445689998888776665310 0344 456677888877788889999888876 22222 234
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC--C----CHHHH
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHT-----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP--M----TGLIL 209 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~-----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p--~----~~~~~ 209 (292)
.+|..|+..|+-+.--+.++.+-..+..+. ...+..++-.+...++++.||....++.++... + ....+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 678889998887776666655532221111 111111111223345679999999999877541 1 13467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHH---HHHhcCCc
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNK---DAKDPETLANLVV---CSLHQGKS 256 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~---~~~~~g~~ 256 (292)
..+|.+....|+..++....+.++.+ -||.+..+.-.+. ++...|..
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~ 541 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEK 541 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcc
Confidence 77888999999999999999999876 4665554444333 35566653
No 310
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=94.95 E-value=0.0068 Score=56.98 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcC-Cc--HHHHHHHHHhhCCCChhHHhH
Q 022777 241 ETLANLVVCSLHQG-KS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 241 ~~~~~l~~~~~~~g-~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
..|..|+.++...+ ++ ....++.+...+|+||-...+
T Consensus 165 ~GWl~La~i~~~~~~~p~~l~~al~~Wq~~yP~HPA~~~l 204 (536)
T PF04348_consen 165 QGWLELALIYRQYQQDPAQLKQALNQWQQRYPNHPAAQYL 204 (536)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhCcCCcccccC
Confidence 34666666655432 33 445566666777777765443
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.93 E-value=2.2 Score=36.69 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=25.8
Q ss_pred CCCChhHHHHHHHHHhcC--CCCCcc----HHHHHHHHHHHHhcC-CHHHHHHHhhc
Q 022777 83 SPDNKESTISSLKEWLSD--PAIGSN----ATLRLIAGIIFMHEE-DYNEALKHTNA 132 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~--~~~p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~ 132 (292)
.+||.+.|...+.++-.. ...|+. ....+..|......+ ++++|..++++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~ 61 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR 61 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 356777777777666432 012332 133344455455555 66666655554
No 312
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.89 E-value=0.08 Score=45.43 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNG-KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
.+-|.+--.+|.+++..+|.|+++|.. .+.-+...++++.+..+|.++++.+|++|.+|+..-.
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 345888888899999999999998887 5667788999999999999999999999999877543
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.87 E-value=0.71 Score=41.86 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHhCCC-hHHHHHHHHHHHhhCCCcH
Q 022777 143 VQIFLKMHR-SDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 143 a~~~~~~~~-~~~A~~~l~~~~~~~p~~~ 170 (292)
|.-+...|. -++|+.+++.+++..|.+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ 414 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDI 414 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccH
Confidence 445667777 7889999999999988774
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.79 E-value=2.9 Score=37.44 Aligned_cols=161 Identities=11% Similarity=-0.015 Sum_probs=89.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHH-HHhh---CCCcHHHHHHH-H
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRA-MQQI---DEDHTLTQLAN-A 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~---~p~~~~~~l~~-a 177 (292)
.|-..+.+..++.++..+|+.+.|.+.+++. .+....+.. ..+..-..-... ..++ .+.|....++. -
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRA-----Lf~~e~~~~--~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERA-----LFAFERAFH--PSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH--HHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 6777888888888888888888777777751 000000000 000000000000 0011 23332222221 1
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-C----CHHHHHHHHHHH
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPM-TGL-ILNGKAVCCMHMGNFDEAEGLLLDALNKDA-K----DPETLANLVVCS 250 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~~l~~~~ 250 (292)
++.....+|-+.-|++..+-++..+|. ||. ++..+=....+.++++=-+..++....... + -|...+..+.++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 112223457799999999999999998 774 666667778889999888888887655211 1 123445555554
Q ss_pred HhcC-C---------------c-HHHHHHHHHhhCCC
Q 022777 251 LHQG-K---------------S-TSRYLNQLKLTHPD 270 (292)
Q Consensus 251 ~~~g-~---------------~-a~~~~~~~~~~~P~ 270 (292)
...+ . . |.+.++++...+|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4332 2 3 77788877776654
No 315
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.64 E-value=0.042 Score=47.05 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=68.5
Q ss_pred HHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 194 IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL-VVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 194 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
.|.+.....|+++.+|...+....+.|-+.+-...|-++++++|.|.+.|..- +.-+...++. ++.++++.++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 45555677899999999999999999999999999999999999999999653 3335555666 88999999999999
Q ss_pred ChhH
Q 022777 271 HMLV 274 (292)
Q Consensus 271 ~~~~ 274 (292)
+|.+
T Consensus 175 ~p~i 178 (435)
T COG5191 175 SPRI 178 (435)
T ss_pred CchH
Confidence 9964
No 316
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.61 E-value=0.048 Score=44.73 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=56.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
....+.++.+.|-+.|.+++.+-|.+...|+.+|..-.+.|+. |.+.+.+.++++|.+.....
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 4567789999999999999999999999999999999999998 88899999999999875443
No 317
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.56 E-value=0.15 Score=29.03 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGL--LLDALNKDAKD 239 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~ 239 (292)
+.+..+|..+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5677889999999999999999 44777777764
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.40 E-value=5.1 Score=38.62 Aligned_cols=144 Identities=18% Similarity=0.147 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhcC-CCCCc-cHHHHHHHHHHHH-hcCCHHHHHHHhhcC-------Cch----hHHHHHHHHHHhCCChH
Q 022777 88 ESTISSLKEWLSD-PAIGS-NATLRLIAGIIFM-HEEDYNEALKHTNAG-------GTM----ELHALNVQIFLKMHRSD 153 (292)
Q Consensus 88 ~~A~~~~~~~l~~-~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~-------~~~----~~~~~~a~~~~~~~~~~ 153 (292)
..|+..++-+++. ...|. ...+++.+|.+++ ...+++.|...+.+. +-. .+..+++.++.+.|...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666666532 11232 4556677777777 567788888887761 111 23446677777777666
Q ss_pred HHHHHHHHHHhhCCC---cH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC--CCCHH----HHHHHHHHHHhcCC
Q 022777 154 YAERQLRAMQQIDED---HT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY--PMTGL----ILNGKAVCCMHMGN 221 (292)
Q Consensus 154 ~A~~~l~~~~~~~p~---~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~--p~~~~----~~~~la~~~~~~g~ 221 (292)
|...+++.++.... +. ..++..+...+. .+++..|++.++.+.... +.++. +....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~--~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ--HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 88888887775322 22 112222222222 256888888888876653 34442 33334666677777
Q ss_pred HHHHHHHHHHHHh
Q 022777 222 FDEAEGLLLDALN 234 (292)
Q Consensus 222 ~~~A~~~~~~al~ 234 (292)
.+++++.++++..
T Consensus 195 ~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 195 PDDVLELLQRAIA 207 (608)
T ss_pred chhHHHHHHHHHH
Confidence 8888888887743
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=4.2 Score=39.76 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=113.4
Q ss_pred hhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+...+.+..|+-||...+-...+++.-.+.+...|.-+.+.|++++|..+|.++ +|+... .-+....+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHH
Confidence 5567788899999999955444566655556666777888999999999999877 333321 112333445
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHH-------------------HHHHHhhcCCchhHHHHHH-----
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYN-------------------EALKHTNAGGTMELHALNV----- 143 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~~~~~~~~~~~a----- 143 (292)
..-..+++.+.+.+... .+-...|=.+|.+.++.+ .|++++++.+..+-...+|
T Consensus 414 knLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 55556666666663322 222333445666666544 4555544422211111111
Q ss_pred ------HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHhccccHHHHHHHHHHhHhh-C-C-CCHH---HHH
Q 022777 144 ------QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLAN-AWLNLAVGGSKIQEAYLIFQDFSEK-Y-P-MTGL---ILN 210 (292)
Q Consensus 144 ------~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~-a~~~l~~~~~~~~~A~~~~~~~~~~-~-p-~~~~---~~~ 210 (292)
.++...+++++|++.+..+ +|+.....+.. +-..+ . ...++-..++-+.+.. + | .+.. ...
T Consensus 492 he~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll--~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~ 565 (933)
T KOG2114|consen 492 HEWVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILL--E-HDPEETMKILIELITELNSQGKGKSLSNIPD 565 (933)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHH--h-hChHHHHHHHHHHHhhcCCCCCCchhhcCcc
Confidence 3455677788887776443 55443222211 11111 1 2244444444443321 1 1 1110 001
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
..-.+..-.++++.-..++....++-|+.++
T Consensus 566 ~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 566 SIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred chhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 1223334456677666666666777776665
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.30 E-value=0.077 Score=27.62 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhh
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTN 131 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~ 131 (292)
+.+.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666666554
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=0.53 Score=37.55 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC--c--H--HH
Q 022777 107 ATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDED--H--T--LT 172 (292)
Q Consensus 107 ~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~--~--~--~~ 172 (292)
...+..+|..|.+.|+.+.|++.|.+ ..-.+....+..+.+..+++......+.++...... + . .+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35667888888888888888888876 122344556667777788888888888777665221 1 1 12
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhC
Q 022777 173 QLANAWLNLAVGGSKIQEAYLIFQDFSEKY 202 (292)
Q Consensus 173 ~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~ 202 (292)
....+...+.. ++|.+|-..|-+....+
T Consensus 116 k~~~gL~~l~~--r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQ--RDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHh--chHHHHHHHHHccCcCC
Confidence 22333333332 34666666666654433
No 322
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.11 E-value=3.6 Score=39.16 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=101.5
Q ss_pred CCCchhhhhhhhhhccHHHHHhhccCCCCCCc-hHHH-----HHHHHHHHHHhhCChhHHHHhhhhc-----CCchHHHH
Q 022777 6 APDHLFNLRNNFYLGAYQAAINNSDLTNLPPD-DAVE-----RDCLVYRSYIALGSYQLVISEIDES-----AATPLQAV 74 (292)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~Ai~~~~~~~~~p~-~~~~-----a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~~~a~ 74 (292)
+|+++..+...-++|++.+|...+ ++---+ ...+ -.+-.++-++..|..++-...+++. +-..+.+
T Consensus 632 ~P~~iLlA~~~Ay~gKF~EAAklF--k~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka- 708 (1081)
T KOG1538|consen 632 TPNDLLLADVFAYQGKFHEAAKLF--KRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA- 708 (1081)
T ss_pred CchHHHHHHHHHhhhhHHHHHHHH--HHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH-
Confidence 388898889999999999999882 221111 0111 1233567777777777665555432 2112211
Q ss_pred HHHHHhhcCCCChhHHHHHHHH---------HhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHH
Q 022777 75 KLLALYLSSPDNKESTISSLKE---------WLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQI 145 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~---------~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~ 145 (292)
.|+++...|+.++|+...-+ +..+ .+-.+.+....++.-+.....+.-|.++|.+-++. ..+.++
T Consensus 709 --AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---ksiVql 782 (1081)
T KOG1538|consen 709 --AAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---KSLVQL 782 (1081)
T ss_pred --HHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---HHHhhh
Confidence 35666677887777654311 1110 12333455556666666666666777777663332 234567
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
.+..+++++|-.+-++--+.-|+-. + -+.....+..++.||-..|.++
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~dVy---~--pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDDVY---M--PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eeecccchHhHhhhhhCcccccccc---c--hHHHHhhhhhhHHHHHHHHHHh
Confidence 7788999999877665555444321 1 1112223456677777666654
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.92 E-value=5.2 Score=39.43 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=92.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHH-H---HHhCCChHHHHHHHHHHHhhCCCc-----HHHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQ-I---FLKMHRSDYAERQLRAMQQIDEDH-----TLTQL 174 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~-~---~~~~~~~~~A~~~l~~~~~~~p~~-----~~~~l 174 (292)
|.-.+.+..-+..+...|.+.+|+...-...+++....+.+ . +...++. ..+..+++.-|.+ +.+.+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~l----sll~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSEL----SLLLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccch----HHHHHHHHhCCHHHHhhCchHHH
Confidence 44567777778888888888888887766555543332211 1 2222322 2333344433433 34556
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhCCC--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---
Q 022777 175 ANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--T-------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET--- 242 (292)
Q Consensus 175 ~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--- 242 (292)
..+|..... .++++|-.+..++...-|. . ....-..|.+....|++++|++..+.++..-|.+...
T Consensus 420 l~aW~~~s~--~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 420 LQAWLLASQ--HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHc--cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 667765553 4588888777776543222 1 1344456777788888888888888888776665322
Q ss_pred --HHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 243 --LANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 243 --~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
...++.+....|++ |..+++.+.+.
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 33445555556665 55555555543
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.88 E-value=6.5 Score=37.90 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=81.9
Q ss_pred CCCchHHHHHHHHHHHHH-hhCChhHHHHhhhhc----CCch-----HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCC
Q 022777 34 LPPDDAVERDCLVYRSYI-ALGSYQLVISEIDES----AATP-----LQAVKLLALYLSSPDNKESTISSLKEWLSDPAI 103 (292)
Q Consensus 34 ~~p~~~~~a~~~la~~~~-~~g~~~~Al~~~~~a----~~~~-----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 103 (292)
.+|.-.+.+++.+|.++. ...+++.|..++.++ ..++ ..+...++.++.+.+... |...+.+.+.....
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 456555666777888876 678899999999876 1122 223456788887665555 88888777764111
Q ss_pred -CccH---HHHHHHHHHHHhcCCHHHHHHHhhc-------CCchhH----HHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 104 -GSNA---TLRLIAGIIFMHEEDYNEALKHTNA-------GGTMEL----HALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 104 -p~~~---~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~----~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
+... ...+......+..+++..|+..++. ..++.. ....+.+....+.++++++.++++..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 2222 1222224444444899999999987 234433 22345677778888888888888743
No 325
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=93.79 E-value=3.5 Score=38.26 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=101.4
Q ss_pred CChhHHHHHH-HHHhcCCCCCccH-HHHHHHHHHHHhcCCHHHHHHHhhc-CC------chhHHHHHHHHHHhCCChHHH
Q 022777 85 DNKESTISSL-KEWLSDPAIGSNA-TLRLIAGIIFMHEEDYNEALKHTNA-GG------TMELHALNVQIFLKMHRSDYA 155 (292)
Q Consensus 85 ~~~~~A~~~~-~~~l~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~-~~------~~~~~~~~a~~~~~~~~~~~A 155 (292)
++.....+.| .++-.. .++.. .+...-+.++.++|+.++|-..+.+ |. -.+...+.+++....+++..|
T Consensus 41 ~~a~a~s~~yl~qa~qs--~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~A 118 (604)
T COG3107 41 GTANASSQFYLQQAQQS--SGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAA 118 (604)
T ss_pred CCcchhHHHHHHHHhhc--CchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHH
Confidence 4443334433 444333 34433 4445556688899999999999988 31 123455678888899999999
Q ss_pred HHHHHHHHhh-CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----
Q 022777 156 ERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLL---- 230 (292)
Q Consensus 156 ~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~---- 230 (292)
...+.+.... -|.+-..++..+.+-..... ..++...+..+..+|--. ..+ +..+.+.=...+.
T Consensus 119 l~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~---~~~~~a~rari~~~~lL~----~k~----~q~nid~tW~ll~~~~~ 187 (604)
T COG3107 119 LQQLAKLLPADLSQNQQARYYQARADALEAR---GDSIDAARARIAQDPLLS----GKA----KQANIDKTWQLLSEQAN 187 (604)
T ss_pred HHHHhhcchhhcCHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHhhhhcc----chh----HHHhHHHHHHHhhhhcc
Confidence 9988877543 23333334444433333332 234444455444443200 000 1111111111222
Q ss_pred -HHHh--hCCC--CHHHHHHHHHHHHhcCCc---HHHHHHHHHhhCCCChhHHhH
Q 022777 231 -DALN--KDAK--DPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 231 -~al~--~~p~--~~~~~~~l~~~~~~~g~~---a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.++. -+++ .-..|..++.+|...|.. ...-++++...+|+||-...+
T Consensus 188 ~~VIn~sa~e~~~~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA~~~ 242 (604)
T COG3107 188 TGVINNSADEGNAALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAAKML 242 (604)
T ss_pred ccceecccCCcccccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchhhhC
Confidence 1233 3455 445688899999888765 566777888899999976554
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.55 E-value=8.3 Score=38.07 Aligned_cols=149 Identities=13% Similarity=-0.020 Sum_probs=70.3
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHhhcC---------Cchh--HHHHHHHH
Q 022777 82 SSPDNKESTISSLKEWLSDPAIGSN-----ATLRLIAGIIFMHEEDYNEALKHTNAG---------GTME--LHALNVQI 145 (292)
Q Consensus 82 ~~~~~~~~A~~~~~~~l~~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~---------~~~~--~~~~~a~~ 145 (292)
...|+.+++....+.++.. -|.+ ...+..+|.+..-.|++++|+.+.... ...+ +....+.+
T Consensus 469 l~~~~~e~a~~lar~al~~--L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQ--LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HhcCCHHHHHHHHHHHHHh--cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3446666666666666554 3332 344455666666667777666665541 1111 22233556
Q ss_pred HHhCCChHHHHHHH--HHHHhh----CCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHh----HhhCCCC--HH-HH
Q 022777 146 FLKMHRSDYAERQL--RAMQQI----DEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDF----SEKYPMT--GL-IL 209 (292)
Q Consensus 146 ~~~~~~~~~A~~~l--~~~~~~----~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~----~~~~p~~--~~-~~ 209 (292)
+..+|+...|.... ...-.. .|-+. ..+....|.++ +++.+....... ....|.. +. .+
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~-----r~~~~~~ear~~~~~~~~~~~~~~~~~~~~ 621 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL-----RLDLAEAEARLGIEVGSVYTPQPLLSRLAL 621 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-----HHhhhhHHhhhcchhhhhcccchhHHHHHH
Confidence 66666333332222 111111 22221 11222222222 233333333332 2223322 22 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDA 237 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p 237 (292)
..++.+....|++++|...+.+...+.-
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3667777777888887777777776643
No 327
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.51 E-value=2 Score=43.11 Aligned_cols=98 Identities=22% Similarity=0.180 Sum_probs=74.6
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCCcHHHH-----HHHHHHHHHh---ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQIDEDHTLTQ-----LANAWLNLAV---GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~-----l~~a~~~l~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
..++..+.|++|+..|+++...-|+-...+ .+.+..--.. +...+++|+..|+++.. .|..|--|.+.|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 456778899999999999998877763222 2211111111 11368999999999865 45566678899999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
|..+|+++|=++-|.-|++..|++|.+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999876
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.48 E-value=0.1 Score=27.12 Aligned_cols=25 Identities=32% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.+...+|.++...|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4677899999999999999988763
No 329
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.26 E-value=2.8 Score=38.14 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=69.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcH-H-------HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHT-L-------TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~-~-------~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
|.++.+++++.+|++++.++.+...+++ . .++..+++ .++.+.-...+..+-+..|.++-+..-.|.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-----l~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-----LNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-----HhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 5667777788888887777766543331 1 11222221 123455445555555667777777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHH-------------HH--HHHHHHHhcCCc--HHHHHHHHHh
Q 022777 215 CCMHMGNFDEAEGLLLDALNKDAKDPET-------------LA--NLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------~~--~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
...+.|++.+|+..+...-..-.+.... ++ ..+.++...|.+ ++..++++..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 8888888888888777655441111111 11 135567777877 5555555543
No 330
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.22 E-value=6.6 Score=35.92 Aligned_cols=172 Identities=9% Similarity=0.001 Sum_probs=119.8
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-----
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI----- 165 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~----- 165 (292)
.+++++.. -|-.++.|+-...-+...++-+.|+...++ +..|.....++.+|...++-++....++++.+.
T Consensus 290 ~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 290 IHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred HHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 44556655 677788999888888899999999999988 566667788888888888888777766666541
Q ss_pred ---C-------CCcH----------HHHHHHHHHHH---HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH-HhcCC
Q 022777 166 ---D-------EDHT----------LTQLANAWLNL---AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC-MHMGN 221 (292)
Q Consensus 166 ---~-------p~~~----------~~~l~~a~~~l---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~ 221 (292)
+ .+++ ...+..+|+-. -....-..-|+.+|-++-+..-....++...|.+- ...|+
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d 447 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD 447 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence 1 1111 11223334311 11112278889999998776545555666666554 45899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+.-|-.+|+-.+...|+++-.....-..+...++. |..+|+++..
T Consensus 448 ~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 448 RATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 99999999999999999987666665666677766 8888886553
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.19 E-value=0.55 Score=42.86 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNG 211 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 211 (292)
|..|....+.+.+....|.|+.+...+..+-.. ...+...+ +...-..+.+++++|+..-..++...-++++++.-
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~---~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i 396 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR---CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV 396 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH---HHHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence 455555556666666666666666666555443 11111111 11111224456777777777776666666766666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
-+.....+|-+++|.....+++.++|.....|.|
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 6666777777777777777777776654444444
No 332
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.11 E-value=1.2 Score=31.33 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHhhc--------CC------chhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 117 FMHEEDYNEALKHTNA--------GG------TMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~--------~~------~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
.++.|++..|++.+.+ .. ..-+...++.+....|++++|...+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4466777777666654 01 1234556778888888888888888888876
No 333
>PF13041 PPR_2: PPR repeat family
Probab=93.07 E-value=0.34 Score=29.49 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=29.1
Q ss_pred chHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHH
Q 022777 69 TPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATL 109 (292)
Q Consensus 69 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~ 109 (292)
|+..++..+...+.+.|+.++|.+.|+++.+.+..|+...+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45556666677777778888888888888887766764433
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=4.3 Score=38.35 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=100.2
Q ss_pred HHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHH
Q 022777 46 VYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNE 125 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~ 125 (292)
..+.....|+++.|...+... | ......++.++..+|-.++|+.. .|+ ++..+-+ .++.|+++.
T Consensus 592 eyqt~vmrrd~~~a~~vLp~I-~--k~~rt~va~Fle~~g~~e~AL~~---------s~D-~d~rFel---al~lgrl~i 655 (794)
T KOG0276|consen 592 EYQTLVLRRDLEVADGVLPTI-P--KEIRTKVAHFLESQGMKEQALEL---------STD-PDQRFEL---ALKLGRLDI 655 (794)
T ss_pred HHHHHhhhccccccccccccC-c--hhhhhhHHhHhhhccchHhhhhc---------CCC-hhhhhhh---hhhcCcHHH
Confidence 355777888888877644322 2 33445678888888888777544 232 3445544 568899999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC
Q 022777 126 ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT 205 (292)
Q Consensus 126 A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~ 205 (292)
|.....+.+++.-+..+|.+....+++..|.+.+.++-... +++.++...|+- +-+..+....+....+
T Consensus 656 A~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~----------~LlLl~t~~g~~-~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 656 AFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLG----------SLLLLYTSSGNA-EGLAVLASLAKKQGKN 724 (794)
T ss_pred HHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchh----------hhhhhhhhcCCh-hHHHHHHHHHHhhccc
Confidence 99999888888889999999999999999999887775441 111222212212 2222333333333222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
- .--.++...|++++....+.+.
T Consensus 725 N----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 N----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c----hHHHHHHHcCCHHHHHHHHHhc
Confidence 1 1235788899999998887763
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=8.9 Score=36.13 Aligned_cols=122 Identities=11% Similarity=-0.068 Sum_probs=79.7
Q ss_pred CCCccHHHHHH--HHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHH-HHhhCCCcHHHH
Q 022777 102 AIGSNATLRLI--AGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRA-MQQIDEDHTLTQ 173 (292)
Q Consensus 102 ~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~p~~~~~~ 173 (292)
++|.++..... +...+...++...+.-.++. +++..++..++......|....+...+.+ +....|++....
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 36777777544 36666677777666665554 56777888888777777777777777666 666778875322
Q ss_pred HHH-H---HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 174 LAN-A---WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 174 l~~-a---~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
-.. . ...+..+.++..++.....+..+..|.++.+...+...-.+...|.
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 111 0 1222334567888888888888888888877766666644444444
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.68 E-value=0.5 Score=43.60 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM---GNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
.+..|+..|.+.+...|+....+-+.+.++++. |+-=.|++....+++++|-...+++.|+.++...+++ |....
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 367778888888888888888888888888774 4555567777778888888888888888888888877 77777
Q ss_pred HHHHhhCCCChhHHh
Q 022777 262 NQLKLTHPDHMLVKR 276 (292)
Q Consensus 262 ~~~~~~~P~~~~~~~ 276 (292)
..+...+|.+.-...
T Consensus 469 ~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 469 WALQMSFPTDVARQN 483 (758)
T ss_pred HHHhhcCchhhhhhh
Confidence 777777775554333
No 337
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=6.3 Score=33.43 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH-
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD- 223 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~- 223 (292)
++.+..+-+.|+++.+.++.++|.+...+-..-.+.-.. ..+..+-++.+.++++.+|.|-++|--.-++....|+..
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 444555556666666666666666532211111111011 122455555666666666666666666666666666555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHH
Q 022777 224 EAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~ 245 (292)
.=..+.+.++..+..|.-+|-.
T Consensus 131 rELef~~~~l~~DaKNYHaWsh 152 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSH 152 (318)
T ss_pred chHHHHHHHHhccccchhhhHH
Confidence 4455555666666555555544
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.19 E-value=21 Score=39.24 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=66.6
Q ss_pred hhhhhhccHHHHHhhcc--CCCCCCchHHHHHHHHHH-HHHhhCChhHHHHhhhh-cCCchHHHHHHHHHhhcCCCChhH
Q 022777 14 RNNFYLGAYQAAINNSD--LTNLPPDDAVERDCLVYR-SYIALGSYQLVISEIDE-SAATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~~--~~~~~p~~~~~a~~~la~-~~~~~g~~~~Al~~~~~-a~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
+..|..|.|.+|+-+.+ -..-.+.+-.+.++++-+ +|...++++...-.... ...|+..- ........|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~---qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQ---QILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHH---HHHHHHhhccHHH
Confidence 36788999999998832 112233434556666666 89999998886655542 22333221 1112334577888
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhh
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTN 131 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 131 (292)
|...|++++.. +|+.+..+...-......|.+...+...+
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhc
Confidence 88888888877 66655444444444445555555544443
No 339
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.12 E-value=0.48 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 220 GNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
|+.+.+...|++++...|.++++|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655543
No 340
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=1.4 Score=37.27 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
++++.|+.+.++++..+|++|.-+.-.|.+|.++|.+.-|+..++..++.-|+++.+-
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 4466666666666666666666666666666666666666666666666666666544
No 341
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=2.2 Score=36.22 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHH
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESF 284 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~ 284 (292)
...++=..++..++++.|....++.+.++|.+|.-+--.|.+|.+.|-+ |..-++...+..|++|....+.......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l 261 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLEL 261 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4455667889999999999999999999999998888999999999986 8888888888999999877766555444
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.87 E-value=5.9 Score=32.61 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhhC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKY--PM----TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP-ETLANLVV 248 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 248 (292)
+..|+..|.++.+.. |. ...+.+.+|.+..+.|++++|.+.|.+++.....+. ..+.+++.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 567788888877543 22 246888899999999999999999999997644433 35556654
No 343
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.76 E-value=1.4 Score=37.84 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
++++.+...+++++..+|-+-..+..+=..+...|+...|+..|++.-+.
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777765543
No 344
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.65 E-value=3.3 Score=42.41 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=105.9
Q ss_pred CCCchhhhh-hhhhhccHHHHHh------h-cc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----------
Q 022777 6 APDHLFNLR-NNFYLGAYQAAIN------N-SD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---------- 66 (292)
Q Consensus 6 ~~~~~~~~~-~~~~~g~~~~Ai~------~-~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---------- 66 (292)
+.++++.-. .....|.++.|.+ . .+ ...+-|+ ....+..+++.+-++|+.++|+.+-.++
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~-~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE-VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh-HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 334444333 3455667776666 3 12 3334566 5778888999999999999999877654
Q ss_pred CCch-HHHHHHHHHhhcCCCChhHHHHHHHHHhcC-----C-CCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-------
Q 022777 67 AATP-LQAVKLLALYLSSPDNKESTISSLKEWLSD-----P-AIGSNATLRLIAGIIFMHEEDYNEALKHTNA------- 132 (292)
Q Consensus 67 ~~~~-~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------- 132 (292)
++++ ...+..++.+....+....|+..+.++... + ..|.-......++.++...++++.|+++++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 3443 556667776666666777777766665432 1 1455555667788888888999999999886
Q ss_pred ---C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 133 ---G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 133 ---~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+ ........++++...++++..|+.+.+....+
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 1 22334556778888888888887777766554
No 345
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.60 E-value=0.89 Score=38.72 Aligned_cols=62 Identities=19% Similarity=0.056 Sum_probs=52.1
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
|...|.+++...|++...++.+|.+....|+.-+|+-+|-+++-...-.+.+.-|+..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999997655558888999888776
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=1.5 Score=47.32 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhc-C------CchhHHHHHHH-HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 022777 112 IAGIIFMHEEDYNEALKHTNA-G------GTMELHALNVQ-IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 183 (292)
Q Consensus 112 ~la~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~a~-~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 183 (292)
.+|.+-++.|.|..|+.++++ . ...+....+-+ +|..++++|.-...... .....+.. ..+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~--r~a~~sl~-----~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR--RFADPSLY-----QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH--hhcCccHH-----HHHHHHH
Confidence 688889999999999999987 1 12223333334 99999999998887764 22222321 1223333
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCc
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV-CSLHQGKS 256 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~ 256 (292)
..|+++.|..+|++++...|+++.-+.+.-......|+++..+-...-.....++..+-|++++. ..+..+++
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 45789999999999999999999888888899999999999999999888888888888888875 23455554
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.12 E-value=0.51 Score=27.01 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+...+|.+|..+|++++|+..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566778888888888888888887664
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.02 E-value=0.43 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
+++..+|.+-+..++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998763
No 349
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.64 E-value=9.7 Score=32.37 Aligned_cols=92 Identities=24% Similarity=0.229 Sum_probs=54.3
Q ss_pred HHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 022777 124 NEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFS 199 (292)
Q Consensus 124 ~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~ 199 (292)
..|++|-.. -.+|+.+..+|..+.+.|++.+|+.++-.. .+|... .. +.-++....
T Consensus 74 ~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~--~~~~~~-~~-----------------~~ll~~~~~ 133 (260)
T PF04190_consen 74 KAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG--TDPSAF-AY-----------------VMLLEEWST 133 (260)
T ss_dssp HHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHH-HH-----------------HHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc--CChhHH-HH-----------------HHHHHHHHH
Confidence 457777722 378999999999999999999999877211 111110 00 001112222
Q ss_pred hhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhh
Q 022777 200 EKYPMTGLILNGKAV-CCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 200 ~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 235 (292)
...|..++.+...|+ -+...++...|...+..-++.
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666666666655 456689999999887776655
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=10 Score=32.60 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=88.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcCCCCCc------cHHHHHHHHHHHHhcCCHHHHHHHhh----------cCCchhH
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSDPAIGS------NATLRLIAGIIFMHEEDYNEALKHTN----------AGGTMEL 138 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~----------~~~~~~~ 138 (292)
..+|......+++++|+..|.+++..|..-+ .......++.+|...|++..--.... +|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3455555566777777777777776543222 23445667778888887654332222 2333332
Q ss_pred HHHHHHH-HHhCCChHHHHHHHHHHHhhCCCc--HHHHHHH--HHHHHHhccccHHHHHHHHHHhHhh------CCCCHH
Q 022777 139 HALNVQI-FLKMHRSDYAERQLRAMQQIDEDH--TLTQLAN--AWLNLAVGGSKIQEAYLIFQDFSEK------YPMTGL 207 (292)
Q Consensus 139 ~~~~a~~-~~~~~~~~~A~~~l~~~~~~~p~~--~~~~l~~--a~~~l~~~~~~~~~A~~~~~~~~~~------~p~~~~ 207 (292)
...+... -.....++.-+..+...+++.... ..+++.+ -.+++.-..++|.+|+.....++.. .|.=..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 2222221 122344555555555555542111 1222211 1233344567799999888876532 233346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
++..-..++.+..+..++...+..|-.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 777778888888888888887776643
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.44 E-value=1.1 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHhHhhCC----C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 186 SKIQEAYLIFQDFSEKYP----M-----TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
++|.+|++.+.+..+... . -..++.++|.+....|++++|+..+++++++-..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 456666555555443211 1 1346788999999999999999999999987433
No 352
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.16 E-value=1.5 Score=44.07 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 186 SKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMG-------NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
..|+.|+..|+++...+|.- -++.+..|.++.++- .+++|+.-|++ |.-.|.-|--+..-+.+|...|.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhh
Confidence 45999999999999999874 468899999887642 46667777765 33456666556677778999998
Q ss_pred c--HHHHHHHHHhhCCCChhHHhH
Q 022777 256 S--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 256 ~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
+ -++.+.-+++..|+||.+-.+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 568 YNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHH
Confidence 8 778888999999999986554
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.88 E-value=19 Score=34.52 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=69.1
Q ss_pred HHHHHhhCChhHHHHhhhhc---------CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 022777 47 YRSYIALGSYQLVISEIDES---------AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF 117 (292)
Q Consensus 47 a~~~~~~g~~~~Al~~~~~a---------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~ 117 (292)
|..+.+..+|..++.+|+.. +.......+.++-+|.+..+.+.|.++++++=+. +|.++--.+..-.+.
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--DRQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 44567788899999999865 1222445778888999888999999999999877 899998888888999
Q ss_pred HhcCCHHHHHHHhhc
Q 022777 118 MHEEDYNEALKHTNA 132 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~ 132 (292)
...|+.++|+.++..
T Consensus 439 ~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQK 453 (872)
T ss_pred HHhcchHHHHHHHHH
Confidence 999999999999875
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.55 E-value=1 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
..+.|..+|++++...|.++.+|...+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46777788888888888888777665543
No 355
>PRK12798 chemotaxis protein; Reviewed
Probab=89.25 E-value=17 Score=33.00 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=113.7
Q ss_pred HHHHHHhhCChhHHHHhhhhc-CCchHH-HHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH-HHHhcCC
Q 022777 46 VYRSYIALGSYQLVISEIDES-AATPLQ-AVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI-IFMHEED 122 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a-~~~~~~-a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~-~~~~~g~ 122 (292)
-+.+|...|--...+..+-.. ..++.. .+..-+.-|. .|+.+++.+.+..+.... -|.....++.|.. ......+
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccC
Confidence 355666666555666554433 222322 2222222233 478888888887765432 3444444544444 4556679
Q ss_pred HHHHHHHhhc-----CCc--hhH-HHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhccccHH
Q 022777 123 YNEALKHTNA-----GGT--MEL-HALNVQIFLKMHRSDYAERQLRAMQQIDEDHT-----LTQLANAWLNLAVGGSKIQ 189 (292)
Q Consensus 123 ~~~A~~~~~~-----~~~--~~~-~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~-----~~~l~~a~~~l~~~~~~~~ 189 (292)
+.+|++.|+. |.. .|+ ...-..+....|+.++....-.+.+.....++ .-++..+...+. ++..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~---d~~~ 240 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD---DEIR 240 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc---cccc
Confidence 9999999998 433 233 33334566889999999999999998876664 222332322221 1122
Q ss_pred HHHHHHHHhHhh-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 190 EAYLIFQDFSEK-YPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 190 ~A~~~~~~~~~~-~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
. ..+..++.. +|+ -..+|..++..-.-.|+.+-|...-++++.+-
T Consensus 241 ~--~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 241 D--ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred H--HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 2 224555544 443 35689999999999999999999999999885
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.08 E-value=2.7 Score=29.99 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred HHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 022777 22 YQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLS 99 (292)
Q Consensus 22 ~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 99 (292)
+++|-.+.+|+...++...-+......+++.+|+|++|+...+..-.|+.+.|..|+.... |-.++....+.++-.
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rl--Gl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRL--GLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhh--ccHHHHHHHHHHHHh
Confidence 5666666667776665333344446678899999999998887665678888888887755 344455555555543
No 357
>PF12854 PPR_1: PPR repeat
Probab=88.83 E-value=1.1 Score=24.94 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
|...+..+-..|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355566666777777777777777753
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.78 E-value=1 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
+.+|..|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999995
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.73 E-value=12 Score=30.49 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCc
Q 022777 188 IQEAYLIFQDFSEK-YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK----DPETLANLVVCSLHQGKS 256 (292)
Q Consensus 188 ~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~ 256 (292)
=++|+..|-++-.. .-++++..+.+|..|. .-+.++++..|-+++++.+. ||+++..|+.++...|++
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 45666666665322 2357888888888887 67888899999998887433 588888888888888876
No 360
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=10 Score=37.23 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred HHHHhcCCHHHHHHHhhc-CCc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccccH
Q 022777 115 IIFMHEEDYNEALKHTNA-GGT----MELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKI 188 (292)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~~~~ 188 (292)
.++++..-|+.|+..-.. ..+ .+.+...|.-+.+.|++++|...|-+.+.. +|....... ...+++
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf--------Ldaq~I 413 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF--------LDAQRI 413 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh--------cCHHHH
Confidence 456777788888888776 212 234566677888889999998888887765 443321111 122335
Q ss_pred HHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHhh
Q 022777 189 QEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQLKLT 267 (292)
Q Consensus 189 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~ 267 (292)
.+=...++.+++..-.+.+=-..|-.||.++++.++-.++.+ ..+ ..+..+.+-.+..-..+. ..+....+...
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh----cCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 555556666666554444444556788888888776554443 333 222222222222222222 22333334445
Q ss_pred CCCChhHHhH-HhhHHHHHHHHhh
Q 022777 268 HPDHMLVKRA-SSGDESFERALQS 290 (292)
Q Consensus 268 ~P~~~~~~~~-~~~~~~~~~~~~~ 290 (292)
...|+++.++ ..-.+++++|+..
T Consensus 489 ~~~he~vl~ille~~~ny~eAl~y 512 (933)
T KOG2114|consen 489 FKKHEWVLDILLEDLHNYEEALRY 512 (933)
T ss_pred hccCHHHHHHHHHHhcCHHHHHHH
Confidence 5557777775 4444458887764
No 361
>PF12854 PPR_1: PPR repeat
Probab=88.24 E-value=1.4 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 204 MTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.|...|+.+-..+.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566788888889999999999888875
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.98 E-value=6.8 Score=32.27 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHhHh-----hCCCC--HHHHHHHHHHHHhcCCHHH-------HHHHHHHHHhhCCC--C----HHHHHHH
Q 022777 187 KIQEAYLIFQDFSE-----KYPMT--GLILNGKAVCCMHMGNFDE-------AEGLLLDALNKDAK--D----PETLANL 246 (292)
Q Consensus 187 ~~~~A~~~~~~~~~-----~~p~~--~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~p~--~----~~~~~~l 246 (292)
.+++|+..|.-++- ..+.+ +.++..+||++...|+.+. |...|++++..... . ..+.+-+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 36666666655432 11222 4678889999999999554 55555555544322 2 3567778
Q ss_pred HHHHHhcCCc--HHHHHHHHHhhC
Q 022777 247 VVCSLHQGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 247 ~~~~~~~g~~--a~~~~~~~~~~~ 268 (292)
|.+....|++ |.+++.++....
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCC
Confidence 9999999998 999999998643
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.96 E-value=0.58 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=10.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHh
Q 022777 77 LALYLSSPDNKESTISSLKEWL 98 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l 98 (292)
||..|...||.+.|...+++++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4444444455555555555544
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.45 E-value=6.8 Score=36.14 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.-+..+|+|++|...-+-.+...-.++++.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 334445555555555544444444444443
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.30 E-value=2.3 Score=24.06 Aligned_cols=20 Identities=15% Similarity=-0.159 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCChHHHHHH
Q 022777 139 HALNVQIFLKMHRSDYAERQ 158 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~ 158 (292)
+..+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33444445555555555555
No 366
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=86.86 E-value=9.7 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.477 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHhhCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMT--------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
.+.|+.+++.+-+..|-. -.+-.....++++.|.+++|.+.+++... +|++.....-|.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 445555555555443321 11333456788999999999999999887 888776543333
No 367
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=24 Score=31.91 Aligned_cols=148 Identities=17% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHhhc---C---C---c-----hhHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCCc-
Q 022777 109 LRLIAGIIFM-HEEDYNEALKHTNA---G---G---T-----MELHALNVQIFLKMHRSDYAERQLRAMQQI---DEDH- 169 (292)
Q Consensus 109 ~~~~la~~~~-~~g~~~~A~~~~~~---~---~---~-----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~---~p~~- 169 (292)
+.+.++.+++ .++++.+|.++-+. + . . ...+.-+...|...|+...-...+...+.. ..+.
T Consensus 127 Y~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 127 YLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 3455666555 46889999887765 1 1 1 122444456677778877766666655543 1122
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhHh--hCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 170 TLTQLANAWLNLAVGGSKIQEAYLIFQDFSE--KYP--MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
.-..+.......+.+.+.|+.|-....+..- ... +-+.+++.+|.+-+-+++|..|.+.+.+++.+.|++..+-+.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 1111111111122234558888777766431 111 235788899999999999999999999999999986543222
Q ss_pred ------HHHHHHhcCCc
Q 022777 246 ------LVVCSLHQGKS 256 (292)
Q Consensus 246 ------l~~~~~~~g~~ 256 (292)
+..+...+|..
T Consensus 287 q~v~k~~ivv~ll~gei 303 (493)
T KOG2581|consen 287 QQVNKLMIVVELLLGEI 303 (493)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 23334456654
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.68 E-value=3.4 Score=35.47 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHH
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 265 (292)
.++..+..+.+.|.+.+|+.+-++++..+|-+...+.-+..++...|+- +.+.+++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455677889999999999999999999999999999999999999985 666655543
No 369
>PRK09687 putative lyase; Provisional
Probab=86.62 E-value=20 Score=30.87 Aligned_cols=219 Identities=12% Similarity=0.007 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc-CCchHHHHHHHHHhhcCCCC----hhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES-AATPLQAVKLLALYLSSPDN----KESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~~~a~~~la~~~~~~~~----~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
..+...+.++...|. .++...+.+. ..++.......+..+...|+ ..+++..+..++.. +|+ +.+....+.
T Consensus 38 ~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d-~~VR~~A~~ 113 (280)
T PRK09687 38 LKRISSIRVLQLRGG-QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS-ACVRASAIN 113 (280)
T ss_pred HHHHHHHHHHHhcCc-chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC-HHHHHHHHH
Confidence 345555566666664 3444444444 33343333333444444454 25677777777544 454 444433333
Q ss_pred HHHhcCC-----HHHHHHHhhc---CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc
Q 022777 116 IFMHEED-----YNEALKHTNA---GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187 (292)
Q Consensus 116 ~~~~~g~-----~~~A~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 187 (292)
++-..+. ...+...+.. ..++..+...+..+...++ ++|+..+-.+++ +++.. .+..-+ ..+..-...
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~~~~-VR~~A~-~aLg~~~~~ 189 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK-DPNGD-VRNWAA-FALNSNKYD 189 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CCCHH-HHHHHH-HHHhcCCCC
Confidence 3333321 1233443432 3466667666677767775 678888888876 34332 222211 112110112
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHh
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQLKL 266 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~ 266 (292)
..++...+..++. ..+..+...-...+.+.|+ ..|+..+.+.++..+ +....+..+-..|.+ +...++++..
T Consensus 190 ~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~~a~p~L~~l~~ 262 (280)
T PRK09687 190 NPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDKTLLPVLDTLLY 262 (280)
T ss_pred CHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCHhHHHHHHHHHh
Confidence 4467777777663 3356667777777777887 679999999887532 345555666677777 8899999988
Q ss_pred hCCCChhHH
Q 022777 267 THPDHMLVK 275 (292)
Q Consensus 267 ~~P~~~~~~ 275 (292)
.+| |+.+.
T Consensus 263 ~~~-d~~v~ 270 (280)
T PRK09687 263 KFD-DNEII 270 (280)
T ss_pred hCC-ChhHH
Confidence 888 44443
No 370
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=5.4 Score=37.98 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc-----C------CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA-----G------GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWL 179 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~-----~------~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 179 (292)
-+-|.-.++..+|..++++|.. + ........+..||+...+.|.|.+.+.++.+.+|.+...++...-+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3446668899999999999986 2 2233455677899999999999999999999999998666543322
Q ss_pred HHHhccccHHHHHHHHHHhHh
Q 022777 180 NLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~ 200 (292)
.+. .+.-.+|+.+...+..
T Consensus 438 ~~~--E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 438 FLA--EDKSEEALTCLQKIKS 456 (872)
T ss_pred HHH--hcchHHHHHHHHHHHh
Confidence 222 3557788877776543
No 371
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.31 E-value=2.8 Score=35.97 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
+..=+....+.++ -....++..++..+...|+++.+++.+++ |-+..++..+...|...|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~----e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALE----ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 5555555555543 23467788888999999999988888887 67777888888889999999999999998
Q ss_pred HHhh
Q 022777 162 MQQI 165 (292)
Q Consensus 162 ~~~~ 165 (292)
+.+.
T Consensus 213 l~~~ 216 (280)
T COG3629 213 LKKT 216 (280)
T ss_pred HHHH
Confidence 8764
No 372
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.28 E-value=3.2 Score=38.53 Aligned_cols=92 Identities=11% Similarity=-0.197 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 150 HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG-SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
+....++..+.++++..|+...+....+-+++..+- +..-.|+.--..+++.+|-...+++.|+.++.+++++.+|+..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 446678888989988888887555554545554432 3334444444556778888889999999999999999999998
Q ss_pred HHHHHhhCCCCHH
Q 022777 229 LLDALNKDAKDPE 241 (292)
Q Consensus 229 ~~~al~~~p~~~~ 241 (292)
...+....|.+..
T Consensus 468 ~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 468 HWALQMSFPTDVA 480 (758)
T ss_pred HHHHhhcCchhhh
Confidence 8887778886654
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.28 E-value=31 Score=32.71 Aligned_cols=134 Identities=15% Similarity=-0.026 Sum_probs=88.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------C-------------Cchh------HHHHHHHHHHhCCChH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA----------G-------------GTME------LHALNVQIFLKMHRSD 153 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~-------------~~~~------~~~~~a~~~~~~~~~~ 153 (292)
.|-..+.++.++.++..+|+.+-|...+.+ | ..++ +.....+-+.+.|=+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 688889999999999999998877777664 1 1111 1122234566789999
Q ss_pred HHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccccHHHHHHHHHHh-----HhhCCCCHHHHHHHHHHHHhcCC---HHH
Q 022777 154 YAERQLRAMQQIDED-HTLTQLANAWLNLAVGGSKIQEAYLIFQDF-----SEKYPMTGLILNGKAVCCMHMGN---FDE 224 (292)
Q Consensus 154 ~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~-----~~~~p~~~~~~~~la~~~~~~g~---~~~ 224 (292)
-|.+..+-++.++|. +++..+...-++.... .+|+=-+..++.. +.+.|+-+ +-..+|..+..... .+.
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALra-reYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqs 437 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRA-REYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQS 437 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH-HhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHH
Confidence 999999999999988 6544433332222211 1243333333332 34455543 45567778877777 678
Q ss_pred HHHHHHHHHhhCCC
Q 022777 225 AEGLLLDALNKDAK 238 (292)
Q Consensus 225 A~~~~~~al~~~p~ 238 (292)
|...+.+|+...|.
T Consensus 438 a~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 438 ALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHHhCcH
Confidence 99999999999883
No 374
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.23 E-value=3.2 Score=29.48 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHhh-CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhH
Q 022777 226 EGLLLDALNK-DAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 226 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~ 281 (292)
++.++++-.. .|-.|..+.+||.+|...|++ +.+-|+.=..+.|++....|+.+.+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk~ 115 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMKN 115 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHHc
Confidence 4455554332 344566677777777777776 6666666666777777777776654
No 375
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=86.23 E-value=19 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
-.+.|...+.+|+.++|....+...+..+....|.+
T Consensus 114 ~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 114 ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 356788999999999999999988888888888887
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.92 E-value=6.9 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.-+...++.++|+...+++++..++.++-+
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~~~~~rf 43 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKITDREDRF 43 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcCChHHHH
Confidence 333444444555555555555444444433
No 377
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=25 Score=33.52 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHh
Q 022777 110 RLIAGIIFMHEEDYNEALKHT 130 (292)
Q Consensus 110 ~~~la~~~~~~g~~~~A~~~~ 130 (292)
+..++.-+..+|-.++|++..
T Consensus 617 rt~va~Fle~~g~~e~AL~~s 637 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS 637 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC
Confidence 334444444555555555443
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.92 E-value=2.2 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+++..+|.+.+..++|++|...|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777888888888888777765
No 379
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.34 E-value=2.3 Score=38.46 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc-------------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA-------------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
+.|.++++-.|+|..|++.++. +-+...++..|.+|+.+++|.+|++.+..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888888775 12333466677888888888888888877753
No 380
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=84.10 E-value=0.32 Score=45.93 Aligned_cols=89 Identities=20% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc------C--CchhHHHHHHHHH
Q 022777 76 LLALYLSSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA------G--GTMELHALNVQIF 146 (292)
Q Consensus 76 ~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~------~--~~~~~~~~~a~~~ 146 (292)
.-+..+...|+...|..++.++-.....|. ........|.+...+|++++|+..+.. + .....+..++.++
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 344455566777777666666542211222 345556667777777777777777763 1 1222344566677
Q ss_pred HhCCChHHHHHHHHHHHh
Q 022777 147 LKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 147 ~~~~~~~~A~~~l~~~~~ 164 (292)
...|++-+|...+-.+-.
T Consensus 109 ~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 109 EQQGDPLAAARERIALDP 126 (536)
T ss_dssp ------------------
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 777777666665544433
No 381
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.31 E-value=11 Score=27.38 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHhHhhCCCCH---HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTG---LILNGKAVCCMHMG-----------NFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
+|++-+|+.+.++++..++++. ..+..-|.+..++. -+-.|++-|.++..+.|+.+..++.+|.
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 4678999999999888877765 55666677775543 2345666677777777776666666554
No 382
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.21 E-value=17 Score=27.13 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHH
Q 022777 150 HRSDYAERQLRAMQQIDEDH----TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~ 223 (292)
+....-..+++++++.-.++ -..++...|+....- .+++.++|.-+... .-..+.+|..-|..+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 45555666777777653222 134556666655432 34888899988764 5667899999999999999999
Q ss_pred HHHHHHHHHH
Q 022777 224 EAEGLLLDAL 233 (292)
Q Consensus 224 ~A~~~~~~al 233 (292)
+|.++|+.++
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999865
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.15 E-value=6.7 Score=31.54 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
....++..++.+...|+ +.++..++.++...|+.++|....+++....|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555666777777774 778889999999999999999999999999994
No 384
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.13 E-value=19 Score=27.34 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
++-++--.+++.+.+....+|.++..+|.+|.+.|+..+|-..+.+|.+..
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 445555556666666556678899999999999999999999999887743
No 385
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.46 E-value=21 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCHHHH----HHHHHHHHhcCCc--HHHHHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALN-------KDAKDPETL----ANLVVCSLHQGKS--TSRYLNQL 264 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~----~~l~~~~~~~g~~--a~~~~~~~ 264 (292)
-.+-.|+..+..+|+|++++..-.++|. ++.+....| ++.+..+...|++ |.+.|+.+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3455566666666666666555555543 344444433 3344455566665 55555544
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.21 E-value=61 Score=31.61 Aligned_cols=113 Identities=8% Similarity=-0.080 Sum_probs=62.9
Q ss_pred hhhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHh--hCChhHHHHhhhhc-CCchHHHHHHHHH-hhcCC
Q 022777 10 LFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIA--LGSYQLVISEIDES-AATPLQAVKLLAL-YLSSP 84 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~--~g~~~~Al~~~~~a-~~~~~~a~~~la~-~~~~~ 84 (292)
+..+...+..|+...+.... ++. -.|- ..+......... ...+++...++++- +-|....+..-.. .+...
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l~-d~pL---~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTLK-DYPL---YPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcc-CCCc---HhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 44777888889988887773 232 2332 112222222222 23466666666654 4344333332222 22234
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
++...-+..+ .. .|.+......++......|+.++|....++
T Consensus 113 ~~w~~~~~~~----~~--~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 113 EDWRGLLAFS----PE--KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred cCHHHHHHhc----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544422 22 577888888888888899998777666654
No 387
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.01 E-value=53 Score=30.82 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHhcCC-c--HHHHHHHHHhhCCCChh
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNK---DAKD----PETLANLVVCSLHQGK-S--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~g~-~--a~~~~~~~~~~~P~~~~ 273 (292)
.++.+|.++..+|+-..|...|...++. ...+ |-++|.+|.+++..|. . ++.++.++....-+...
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 5667899999999999999999988833 2222 4578999999988876 3 99999999876644443
No 388
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=79.42 E-value=29 Score=30.26 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHhcCCHHHHHHHhhc--C--Cch----hHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 114 GIIFMHEEDYNEALKHTNA--G--GTM----ELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 114 a~~~~~~g~~~~A~~~~~~--~--~~~----~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..+...|..+.|+.+++. + .++ -..+.++.++...|..+-|..+|+.+.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677778888887774 1 121 13445677777778777777777776553
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.89 E-value=58 Score=30.60 Aligned_cols=201 Identities=13% Similarity=0.058 Sum_probs=124.5
Q ss_pred HHHHhhcCCCChhH-HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhC
Q 022777 76 LLALYLSSPDNKES-TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKM 149 (292)
Q Consensus 76 ~la~~~~~~~~~~~-A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~ 149 (292)
.+..++. .+..-. ....+.+++.. .++--++..++++|... ..++=...+++ -++......++..|.+
T Consensus 71 ~~~~~f~-~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 71 TLLTIFG-DNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHhc-cchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 3444544 233333 33456777775 56677889999999887 45555556654 2455556667777666
Q ss_pred CChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHh--ccccHHHHHHHHHHhHhhCCCC-HH-HHHHHHHHHHhcCCHHH
Q 022777 150 HRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAV--GGSKIQEAYLIFQDFSEKYPMT-GL-ILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~--~~~~~~~A~~~~~~~~~~~p~~-~~-~~~~la~~~~~~g~~~~ 224 (292)
++-..+...|.+++.. -|.-....+-..|..+-. + ++.+.-+....++....... .. ++-..-.-|....+|.+
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~-dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG-DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 8888899999999865 454434445556655432 2 34666666666665544332 22 33333356677889999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHhhCCCChhHHhHHhhHHHHHHH
Q 022777 225 AEGLLLDALNKDAKDPETLANLVVCSLHQ--GKS-TSRYLNQLKLTHPDHMLVKRASSGDESFERA 287 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~-a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 287 (292)
|++.+..+++.+..|..+.-++...+... |.. ..+++... .=+..-.++..-.++|++-
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s----~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKIS----NISQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhc----chhhccccHHHHHHHHHHH
Confidence 99999999999999999888887765432 222 44554322 1112334566666777654
No 390
>PRK12798 chemotaxis protein; Reviewed
Probab=78.72 E-value=52 Score=29.95 Aligned_cols=232 Identities=11% Similarity=-0.025 Sum_probs=132.2
Q ss_pred cCCCchhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHh
Q 022777 5 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALY 80 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~ 80 (292)
.||.-+..+.+|...|=-.+.++. +.+.++..+.+..+.-+....-.|+..++.+.+... .|+....+..|..-
T Consensus 79 ~dprNv~Aa~iy~lSGGnP~vlr~--L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a 156 (421)
T PRK12798 79 DDPRNVDAALIYLLSGGNPATLRK--LLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQG 156 (421)
T ss_pred CCccchhHHHhhHhcCCCHHHHHH--HHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHH
Confidence 355556667778777777777776 444444334555566666666788888888887654 34444444444432
Q ss_pred -hcCCCChhHHHHHHHHHhcCCCCCcc--HHHHHHHH-HHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHh
Q 022777 81 -LSSPDNKESTISSLKEWLSDPAIGSN--ATLRLIAG-IIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLK 148 (292)
Q Consensus 81 -~~~~~~~~~A~~~~~~~l~~~~~p~~--~~~~~~la-~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~ 148 (292)
.....+..+|+..|..+--. .|+. .++-.... .+....|+.+++..+-.+ +...+.+...+..+..
T Consensus 157 ~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~ 234 (421)
T PRK12798 157 NLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVR 234 (421)
T ss_pred HHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHh
Confidence 33456788888888776544 5763 23333333 344577888877665443 2223334444444444
Q ss_pred CCChHHHHHHHHHHHhh-CCCcHH-HHHHHHHHHHHhccccHHHHHHHHHHhHhhC----CCCHHHHHHHHHHHHhcCCH
Q 022777 149 MHRSDYAERQLRAMQQI-DEDHTL-TQLANAWLNLAVGGSKIQEAYLIFQDFSEKY----PMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~-~p~~~~-~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~g~~ 222 (292)
.++-..- ..+..++.. +|+... ..+..+...+- .|+.+-|.-.-.++.... .+.+.+.+..|....-..+.
T Consensus 235 ~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali--~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~ 311 (421)
T PRK12798 235 LDDEIRD-ARLVEILSFMDPERQRELYLRIARAALI--DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDA 311 (421)
T ss_pred ccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccH
Confidence 4433322 235555554 565532 12222222222 356777777777766543 23456677777777778888
Q ss_pred HHHHHHHHHHH--hhCCCCHHHH
Q 022777 223 DEAEGLLLDAL--NKDAKDPETL 243 (292)
Q Consensus 223 ~~A~~~~~~al--~~~p~~~~~~ 243 (292)
++|...+.++- ++.|.|...+
T Consensus 312 ~~al~~L~~I~~~~L~~~Dr~Ll 334 (421)
T PRK12798 312 ESALEELSQIDRDKLSERDRALL 334 (421)
T ss_pred HHHHHHHhcCChhhCChhhHHHH
Confidence 88888777653 3456665544
No 391
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.32 E-value=4.3 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=13.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
.+...|.+.|++++|...++++.+
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhH
Confidence 344556666666666666665543
No 392
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.67 E-value=49 Score=34.11 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
..++.-+..++++-+|-+++.+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4455556666777776666665544
No 393
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.52 E-value=4 Score=21.79 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=16.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcCCCCC
Q 022777 77 LALYLSSPDNKESTISSLKEWLSDPAIG 104 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~~~~p 104 (292)
+...+.+.|+.++|...+.++...+..|
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444555566666666666666554444
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.07 E-value=14 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHhHhhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGL---ILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
.+.++|+..++++++..++.++ ++..+..+++..|++.+++++-.+=
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777776666554 3333444566677777766554443
No 395
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.06 E-value=51 Score=28.95 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-C-------Cch----hHHHHHHHHHHhCCChHHHHHHHHHHHh--hCCCcHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-G-------GTM----ELHALNVQIFLKMHRSDYAERQLRAMQQ--IDEDHTLTQ 173 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-~-------~~~----~~~~~~a~~~~~~~~~~~A~~~l~~~~~--~~p~~~~~~ 173 (292)
.....||.+|.+.+++..|-..+.- + .+. .....++.+|+..++..+|+....++-= .+..+..++
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 4567799999999999999999876 2 112 2355678999999999999988877632 233343333
Q ss_pred HH--HHHHHHHhccccHHHHHHHHHHhHh
Q 022777 174 LA--NAWLNLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 174 l~--~a~~~l~~~~~~~~~A~~~~~~~~~ 200 (292)
+. .+++.....++++-+|-..|-++..
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2233333345668888877777654
No 396
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.81 E-value=44 Score=34.45 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 187 (292)
..+...|..+...+++++|.-.|+.....+- -..+|...|++.+|+.+..+.. .+......++.-.+......++
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gklek---Al~a~~~~~dWr~~l~~a~ql~--~~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEK---ALKAYKECGDWREALSLAAQLS--EGKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHH---HHHHHHHhccHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHccc
Confidence 3444455555566666666655555322211 1123445555555555443321 1222233333333444445566
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+-+|-.+..+.+. ++. .--..+++-..|++|++....+
T Consensus 1015 h~eAa~il~e~~s----d~~---~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLS----DPE---EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhc----CHH---HHHHHHhhHhHHHHHHHHHHhc
Confidence 7777665555433 221 1224455666777777655543
No 397
>PF13041 PPR_2: PPR repeat family
Probab=76.68 E-value=7.8 Score=23.25 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 205 TGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
|...|+.+=..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35568888888999999999999999988753
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.52 E-value=12 Score=27.84 Aligned_cols=44 Identities=9% Similarity=-0.114 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
.+..+|+-+...++.-..+..|..-|..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777777776777888888999999999999999888763
No 399
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=76.14 E-value=53 Score=34.20 Aligned_cols=150 Identities=17% Similarity=0.043 Sum_probs=92.2
Q ss_pred CCChhHHHH------HHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CCch---hHHHHHHH
Q 022777 84 PDNKESTIS------SLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GGTM---ELHALNVQ 144 (292)
Q Consensus 84 ~~~~~~A~~------~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~---~~~~~~a~ 144 (292)
.|.+.++.+ .+...... ..|+....+..++.++-+.|++++|+.+-++ -+++ ..+..++.
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 445554544 55533321 1688899999999999999999999999886 1333 34556666
Q ss_pred HHHhCCChHHHHHHHHHHHhh-----CCCcHHHHHHHHHH-HHHhccccHHHHHHHHHHhHhhC-----CC---CHHHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQI-----DEDHTLTQLANAWL-NLAVGGSKIQEAYLIFQDFSEKY-----PM---TGLILN 210 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~-~l~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~ 210 (292)
.....++...|...+.++... .|+++...+....+ .+..+.++++-|+.+.+.+.... |. ....+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 777788888898888888764 34443221111111 12234456888888888876532 21 234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
.++.+...++++..|..+......
T Consensus 1104 ~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHH
Confidence 555566666666665555554443
No 400
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=75.69 E-value=4.3 Score=21.75 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=11.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHhcCC
Q 022777 77 LALYLSSPDNKESTISSLKEWLSDP 101 (292)
Q Consensus 77 la~~~~~~~~~~~A~~~~~~~l~~~ 101 (292)
+...+...|+.+.|..++..+.+.+
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333444455555555555554443
No 401
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.60 E-value=33 Score=30.11 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=55.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchh---HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA--------GGTME---LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT 172 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~---~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 172 (292)
.+-.+++..+|.-|++.|+-+.|++++++ +.-.+ ....+|..|.-..-..+.++..+.+.+...|...-
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 44567888888888888988888888876 12222 23344555554444444444444444444433222
Q ss_pred HHHHHHHHHHh-ccccHHHHHHHHHHhHhhCC
Q 022777 173 QLANAWLNLAV-GGSKIQEAYLIFQDFSEKYP 203 (292)
Q Consensus 173 ~l~~a~~~l~~-~~~~~~~A~~~~~~~~~~~p 203 (292)
+-..+|-.+++ ..-++.+|-.+|-+.+..+.
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 11222222221 11347888887777665543
No 402
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.20 E-value=22 Score=23.88 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH-------HHhhCCCCHHHH
Q 022777 209 LNGKAVCCMHMGNFDEAEGLLLD-------ALNKDAKDPETL 243 (292)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~-------al~~~p~~~~~~ 243 (292)
+...|+-+-+.|++.+|+..|++ ++...|+++.-.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 34445555555666655555554 445577776543
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.14 E-value=8.7 Score=31.72 Aligned_cols=61 Identities=10% Similarity=-0.056 Sum_probs=40.4
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG 206 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~ 206 (292)
.-+++.+...+++...+.-++..|.+...+..+ +.+++=.|++++|...++-+....|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~Rhfl--fqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFL--FQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHH--HHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345667777777777777777777776555542 3333334667777777777777777654
No 404
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.09 E-value=17 Score=33.04 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHH
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~ 192 (292)
.+..||+++++++-|+.+..+.+..+|..+...|..+-+.-.. ++|.+|-
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L--eRy~eAa 282 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL--ERYSEAA 282 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH--HHHHHHH
Confidence 4567999999999999999999999999987777666543322 3466553
No 405
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=74.25 E-value=6.8 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhhC
Q 022777 207 LILNGKAVCCMHMGNF---DEAEGLLLDALNKD 236 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~---~~A~~~~~~al~~~ 236 (292)
+..+++|+++.+.... .+++.++++.++..
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 3456667777666644 34555555554433
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.05 E-value=21 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
.+..++|+...+.-++..|.+......+-.+++-.|+|++|...++-+-++.|++.
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45699999999999999999998888889999999999999999999999999864
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.62 E-value=82 Score=29.68 Aligned_cols=168 Identities=12% Similarity=-0.044 Sum_probs=103.0
Q ss_pred CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------C--Cch---
Q 022777 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------G--GTM--- 136 (292)
Q Consensus 68 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~--~~~--- 136 (292)
..+-.+++.++.+|.. +..++-....+++++. +-+++..--.|+..|.. ++-+.+...|.+ | .+.
T Consensus 96 ~e~kmal~el~q~y~e-n~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ 171 (711)
T COG1747 96 GESKMALLELLQCYKE-NGNEQLYSLWERLVEY--DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIK 171 (711)
T ss_pred cchHHHHHHHHHHHHh-cCchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHH
Confidence 3344567778888874 3556667788888887 77777777778887766 888888888887 2 111
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
+.+..+.. +--.+.|.-+.+..++..........-+.+-..--+.+.+++++|+.++.-+++.+..+.-+.-.+-.-+
T Consensus 172 evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 172 EVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 12222211 1244556666666665554333321111111111234567799999999988887776665554444444
Q ss_pred Hh--------------------cCCHHHHHHHHHHHHhhCCCCHH
Q 022777 217 MH--------------------MGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 217 ~~--------------------~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
.. -.++.++..-|++.+..+.+|.-
T Consensus 250 Rd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFV 294 (711)
T COG1747 250 RDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFV 294 (711)
T ss_pred HHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceE
Confidence 44 55777888888888777776643
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.62 E-value=59 Score=29.37 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQIDEDHTL----TQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~----~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
..+.-.+..++|..|..+++.+...-|++.. ..+..++-.. ...++.+|.+.++.+...
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W--D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW--DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHH
Confidence 3455666788888888888888775333221 2233332222 234577788777776654
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.60 E-value=19 Score=30.29 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
...+|.-|...|++++|.+.|+.+...
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445667777777777777777777554
No 410
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.08 E-value=15 Score=31.05 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHH
Q 022777 225 AEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 265 (292)
|+.+|.+|+.+.|++...+.++|.+....|+. +.=++-+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 78899999999999999999999999888887 554444443
No 411
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.00 E-value=22 Score=26.98 Aligned_cols=119 Identities=7% Similarity=0.023 Sum_probs=64.6
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHH----HHH---H--HHHH---------hccccHHHHHHHHHHhHhhCCCCH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQL----ANA---W--LNLA---------VGGSKIQEAYLIFQDFSEKYPMTG 206 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l----~~a---~--~~l~---------~~~~~~~~A~~~~~~~~~~~p~~~ 206 (292)
-....|..++-.+++.+.....+-....|+ ..+ . +-.. ..-++....+.++-..-. ..
T Consensus 11 ~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~----~s 86 (161)
T PF09205_consen 11 ERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK----LS 86 (161)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred HHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc----hH
Confidence 345567777777777777665543321111 000 0 0000 011334455555544322 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
++...--..+...|+.+.-.+.+....+.+..+|+++.-++..|.+.|.. +.++++++.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22222234677889999989999998877788899999999999999987 88999888764
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.84 E-value=16 Score=27.92 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
++.....+.-.+..|++.-|..+...++..+|+|.++..-.+.++...|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44566777888889999999999999999999999998888888776664
No 413
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.85 E-value=72 Score=28.28 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 188 IQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 188 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
...++.+.+.+... -...-.++...|.++.++|+..+|...|.+++.+.++..+..+-
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 44555555555443 11222356667777888888888888888888877777665443
No 414
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=71.70 E-value=39 Score=25.15 Aligned_cols=44 Identities=23% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHHHHHhHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 191 AYLIFQDFSEKYPMTG----LILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
|+..|++-.+++.+.. .+.++.|..+...|+.++|...|+.+-+
T Consensus 81 aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 81 ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444555455665543 3567888999999999999999998754
No 415
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=80 Score=28.66 Aligned_cols=167 Identities=9% Similarity=-0.012 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDE 167 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p 167 (292)
++++..=.+++.. +|+...++...=.++...--.. +... ..++.-.++-+.....+++.+|
T Consensus 46 ~e~l~lt~~ll~~--npe~~t~wN~Rr~~~~~r~~~~-------~~~~----------~ek~~~ld~eL~~~~~~L~~np 106 (421)
T KOG0529|consen 46 EEHLELTSELLEK--NPEFYTVWNYRRLIIEERLTRA-------QLEP----------LEKQALLDEELKYVESALKVNP 106 (421)
T ss_pred hHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhhhhh-------cCCH----------HHHHHhhHHHHHHHHHHHHhCc
Confidence 5566666667776 7876666654433332221111 1000 1112245777888899999999
Q ss_pred CcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhCCCCHHHH
Q 022777 168 DHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG----NFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 168 ~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
++...+.-..|+........+..=+.+..++++.+|-|-..|...-.+..... ...+=+.+..+++..++.|..+|
T Consensus 107 ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 107 KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHH
Confidence 99888888888866555556888899999999999998776665544443322 25666788899999999999999
Q ss_pred HHHHHHHH------hcCCc--------HHHHHHHHHhhCCCChh
Q 022777 244 ANLVVCSL------HQGKS--------TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 244 ~~l~~~~~------~~g~~--------a~~~~~~~~~~~P~~~~ 273 (292)
-+...++. ..|++ -..+...+.-.+|+|+.
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 77665543 13422 12334455556888874
No 416
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=71.28 E-value=24 Score=26.29 Aligned_cols=56 Identities=13% Similarity=-0.103 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
...+...+.+. ++ ...+|+-+...++.-..+..+...|..+...|++.+|.++|+.
T Consensus 69 LkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 69 LKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44455555432 23 3556666666666666677777778888888888888777753
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.56 E-value=6 Score=35.87 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSD------PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
+..|.++....||+..|+..++.+--. .+.+=....++..|=+|+..+||.+|++.|..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777889999999988765211 11222667888999999999999999999986
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.88 E-value=83 Score=27.79 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC---
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDE------DHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--- 204 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p------~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--- 204 (292)
.-.++....+.-|.+.|+-+.|++.+++..+..- |-....+-.+++++- ..-+.+-++..+.+++...+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D--~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD--HDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHhCCChhh
Confidence 3456788889999999999999999988876421 111222333333332 22245555555556655444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 205 TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
--.+-...|...+..-+|.+|-..|...+.....
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 1235556788999999999999999988866433
No 419
>COG4499 Predicted membrane protein [Function unknown]
Probab=68.79 E-value=33 Score=30.68 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=8.2
Q ss_pred HHhcCCHHHHHHHhhc
Q 022777 117 FMHEEDYNEALKHTNA 132 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~ 132 (292)
+..+|.+++|+.+-+.
T Consensus 323 ~~GRGe~~eAinIAr~ 338 (434)
T COG4499 323 YSGRGEFKEAINIARN 338 (434)
T ss_pred HhcCccHHHHhhHHHh
Confidence 3345555555555544
No 420
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=68.14 E-value=72 Score=28.49 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
-+|+.+++.++..+|.+...++.++.++...|. ...|...|..+
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~--~~~A~~~~~~L 243 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA--GSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHhc
Confidence 346666666666677776666665555554433 66666666664
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=77 Score=27.55 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=62.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCch---hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA--------GGTM---ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT 172 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~---~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 172 (292)
..-.+++..+|.-|.+.++.+.+.+++++ +--. -+...+|.+|-.+.-.++.++..+.+++..-|....
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33467888899999999999999998887 1111 234556677766666777777777777766555433
Q ss_pred HHHHHHHHHHh-ccccHHHHHHHHHHhHhhCC
Q 022777 173 QLANAWLNLAV-GGSKIQEAYLIFQDFSEKYP 203 (292)
Q Consensus 173 ~l~~a~~~l~~-~~~~~~~A~~~~~~~~~~~p 203 (292)
+-..+|..+.. ...++.+|-.++...+..+.
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 32333333221 11347777777777665543
No 422
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=67.62 E-value=1.1e+02 Score=28.85 Aligned_cols=159 Identities=12% Similarity=0.014 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHH
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIF 146 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~ 146 (292)
...-+..+...|+...|...+.++-.. ..|. -.+.-.+.|.+...+.++..|+..|.+ +.+-.+++..+.+-
T Consensus 66 ~llAa~al~~e~k~~qA~~Ll~ql~~~-Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~ 144 (604)
T COG3107 66 LLLAARALVEEGKTAQAQALLNQLPQE-LTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARAD 144 (604)
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHH
Confidence 334445667789999998888887521 1333 345667889999999999999999998 23334455544443
Q ss_pred HhCCChHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHhHh--hCCC--CHHHHHHHHHHHHh
Q 022777 147 LKMHRSDYAERQLRAMQQIDEDH----TLTQLANAWLNLAVGGSKIQEAYLIFQDFSE--KYPM--TGLILNGKAVCCMH 218 (292)
Q Consensus 147 ~~~~~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~--~~p~--~~~~~~~la~~~~~ 218 (292)
...++ ..++...+..+..+|-- ...++...|..+... .=..++. .++. ....|..++.++..
T Consensus 145 a~ea~-~~~~~a~rari~~~~lL~~k~~q~nid~tW~ll~~~---------~~~~VIn~sa~e~~~~L~GWL~L~rv~~~ 214 (604)
T COG3107 145 ALEAR-GDSIDAARARIAQDPLLSGKAKQANIDKTWQLLSEQ---------ANTGVINNSADEGNAALQGWLDLARVYKD 214 (604)
T ss_pred HHhcc-cchHHHHHHHHHhhhhccchhHHHhHHHHHHHhhhh---------ccccceecccCCcccccchHHHHHHHHHh
Confidence 33332 12333344444444321 122223334333200 0011222 2333 44678888998888
Q ss_pred cCCHH-HHHHHHHHHHhhCCCCHHHH
Q 022777 219 MGNFD-EAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 219 ~g~~~-~A~~~~~~al~~~p~~~~~~ 243 (292)
.+..- .=..-+++....+|.||.+.
T Consensus 215 ~~~~p~qlk~~i~~Wq~~yPqhPaA~ 240 (604)
T COG3107 215 NGSDPPQLKAGIEDWQKRYPQHPAAK 240 (604)
T ss_pred cccCHHHHHHHHHHHHhcCCCCchhh
Confidence 87655 45556667777888888664
No 423
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.08 E-value=41 Score=29.17 Aligned_cols=49 Identities=16% Similarity=0.011 Sum_probs=44.7
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
..|.+.+|+++-++++..+|=+...+..+-.+++.+|+--+++++|++.
T Consensus 291 e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 291 EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4577999999999999999999999999999999999999999888874
No 424
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=66.53 E-value=22 Score=29.21 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHh--hCCCChhHH-h---HH-hhHHHHHHHHhhc
Q 022777 221 NFDEAEGLLLDA--LNKDAKDPETLANLVVCSLHQGKSTSRYLNQLKL--THPDHMLVK-R---AS-SGDESFERALQSV 291 (292)
Q Consensus 221 ~~~~A~~~~~~a--l~~~p~~~~~~~~l~~~~~~~g~~a~~~~~~~~~--~~P~~~~~~-~---~~-~~~~~~~~~~~~~ 291 (292)
.|.++++-+-.- ...+|+...++..++.+....-++...+++.+.. ..|-+..++ + ++ +..+.||++-..|
T Consensus 41 ~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dy 120 (215)
T cd07642 41 QYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDY 120 (215)
T ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444442 2233444455666666665554443333433333 367776655 3 45 6778888887765
No 425
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.42 E-value=1.5e+02 Score=28.91 Aligned_cols=122 Identities=7% Similarity=-0.115 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc-CCchh-HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhcc
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA-GGTME-LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT-QLANAWLNLAVGG 185 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~-~l~~a~~~l~~~~ 185 (292)
..+.-+.-.++.|++..+.....+ .+.|- .+.....+....+.. .-..+...++.+|+.+.. .+-..|.......
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 345555556666666666555544 22221 122222222222211 122444555556665422 2332333221122
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
+++++-+.++ ...|.+......++..+...|+.++|....+++....
T Consensus 113 ~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 113 EDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred cCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344333311 2336666666666666677777666666666665443
No 426
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.23 E-value=1.4e+02 Score=28.49 Aligned_cols=135 Identities=13% Similarity=-0.009 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-----C----CCc------------HHHHHHHHHHHH--HhccccHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-----D----EDH------------TLTQLANAWLNL--AVGGSKIQ 189 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-----~----p~~------------~~~~l~~a~~~l--~~~~~~~~ 189 (292)
|-+.+....++.+...+|+.+-|..++.+++=. . |.+ ....++ .|-++ ...+|=+.
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~-l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLA-LFRYMQSLAQRGCWR 359 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHH-HHHHHHHHHhcCChH
Confidence 678889999999999999999999999888631 2 222 111111 11122 12345588
Q ss_pred HHHHHHHHhHhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHhcCCc-----H
Q 022777 190 EAYLIFQDFSEKYPM-TGL-ILNGKAVCCMHMGNFDEAEGLLLDA-----LNKDAKDPETLANLVVCSLHQGKS-----T 257 (292)
Q Consensus 190 ~A~~~~~~~~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~~-----a 257 (292)
-|++..+-+++++|. +|. +.+.+-....+..+|+=-+..++.. +..-|+.+- -..++.++...... |
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHH
Confidence 899988889999998 775 3444445556677777777777665 334465432 22445555543332 7
Q ss_pred HHHHHHHHhhCC
Q 022777 258 SRYLNQLKLTHP 269 (292)
Q Consensus 258 ~~~~~~~~~~~P 269 (292)
...+.++.+.+|
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 778888888777
No 427
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=62.71 E-value=1.6e+02 Score=28.87 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc-CCchhHHHHHHHHH--HhCCChHHHHHHHHHHHhhCCCcH--HHHHHHHHHHH---H
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA-GGTMELHALNVQIF--LKMHRSDYAERQLRAMQQIDEDHT--LTQLANAWLNL---A 182 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~a~~~--~~~~~~~~A~~~l~~~~~~~p~~~--~~~l~~a~~~l---~ 182 (292)
..||.|.++.|...+|=.++.. ...-.+.-++|+-. ...++...-....++..+ -|-|. -+-|..+-+.+ .
T Consensus 534 vQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQ-lPyHmHINLELlEcVyLtcaML 612 (843)
T KOG1076|consen 534 VQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQ-LPYHMHINLELLECVYLTCAML 612 (843)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhc-CchhhhccHHHHHHHHHHHHHH
Confidence 4589999999999999888876 23333444555432 222222222233444444 45442 22222222111 0
Q ss_pred hc----------------cccHHHHHHHHHH-hHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhCCCCHHH
Q 022777 183 VG----------------GSKIQEAYLIFQD-FSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLD---ALNKDAKDPET 242 (292)
Q Consensus 183 ~~----------------~~~~~~A~~~~~~-~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~p~~~~~ 242 (292)
.+ ...+..-++..++ .+.-.|++..-|..-|.-.+..|+|.++..++.. ++.+.|+--.+
T Consensus 613 lEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V 692 (843)
T KOG1076|consen 613 LEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTV 692 (843)
T ss_pred HhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHH
Confidence 00 0223444444554 3455788999999999999999999999996654 67888886655
Q ss_pred H
Q 022777 243 L 243 (292)
Q Consensus 243 ~ 243 (292)
+
T Consensus 693 ~ 693 (843)
T KOG1076|consen 693 L 693 (843)
T ss_pred H
Confidence 4
No 428
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.63 E-value=54 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
.-+|+..++..+.. .|.|....+.+..+|...|-.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~--s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKK--SPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45777888888888 899999999999999999999999999886
No 429
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.22 E-value=0.81 Score=34.75 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=66.2
Q ss_pred CCchhhhhhhhh-hccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCC
Q 022777 7 PDHLFNLRNNFY-LGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSP 84 (292)
Q Consensus 7 ~~~~~~~~~~~~-~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~ 84 (292)
+.+...+...|. .+.....+.+.+ +...++..+...+..+...|+..++.+..+.+++....=+.. .++......
T Consensus 7 ~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~---~~~~~c~~~ 83 (143)
T PF00637_consen 7 PLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLD---KALRLCEKH 83 (143)
T ss_dssp TSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CT---HHHHHHHTT
T ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHH---HHHHHHHhc
Confidence 344444444433 466666666633 333333334566777888888888878888888744211111 122223334
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCC
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHR 151 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~ 151 (292)
|-++.++-.|.+.-. ...+. .++...++++.|++++.+.++++.+..++..+...++
T Consensus 84 ~l~~~a~~Ly~~~~~------~~~al----~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGN------HDEAL----EILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTT------HTTCS----STSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHccc------HHHHH----HHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 455555554443210 00110 0233445555555555555667777777666655543
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.05 E-value=97 Score=25.84 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCC
Q 022777 208 ILNGKAVCCM---------HMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 208 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~ 238 (292)
.+-..|..+. ..++...|..++++|+.++|+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4445566552 446777888888888888877
No 431
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=1.3e+02 Score=27.29 Aligned_cols=122 Identities=6% Similarity=-0.045 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--h--c------cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLA--V--G------GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~--~--~------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
..++++.+-.+.+..+|+....+...-.+... . . ..-+++-+.....++..+|++--+|+-+.+++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 34457788888888888875333222111111 1 0 012455666777788899999999999999999877
Q ss_pred C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---c---HHHHHHHHHhhCCCCh
Q 022777 221 N--FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK---S---TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 221 ~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~---a~~~~~~~~~~~P~~~ 272 (292)
. +..=+++.+++++.+|.|..+|-..-.+...... . -..+-.+++..++.|-
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence 4 5777889999999999998887444333333222 2 2346666666566653
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.26 E-value=69 Score=23.89 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 188 IQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 188 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.++..++|.-+... ....+.+|...|..+...|++.+|.++|+.
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45567778877665 334567788889999999999999998874
No 433
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.26 E-value=42 Score=24.15 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
-....|.+....||+..|++.+.++-+..+..+-.+..-+..-..+|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34567888888999999999999986664443333332334444444
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.47 E-value=48 Score=32.62 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc--CC--------chHHHHHHHHHhh-cCCCChhHHHHHHHHHhcCCCCCccHHHHH
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES--AA--------TPLQAVKLLALYL-SSPDNKESTISSLKEWLSDPAIGSNATLRL 111 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a--~~--------~~~~a~~~la~~~-~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~ 111 (292)
-..+..+|..-.+|+..+..++.. .| ++...++..|... .+.||.++|+...-.+++.. .|-.++.+.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e-g~vapDm~C 282 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE-GPVAPDMYC 282 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc-CCCCCceee
Confidence 344566777778888777766644 22 1222222223222 24688899999888888763 466777888
Q ss_pred HHHHHHHh---------cCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCC
Q 022777 112 IAGIIFMH---------EEDYNEALKHTNA----GGTMELHALNVQIFLKMHR 151 (292)
Q Consensus 112 ~la~~~~~---------~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~ 151 (292)
..|++|.. .+-.+.|++||++ .+.....+.++.++...|+
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh
Confidence 88887753 3445678888887 2233344455555555554
No 435
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=59.43 E-value=43 Score=25.18 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
...+..-+.+.|+.+|+++++..|++..++..|.....-
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 334455667888999999999999998888777765543
No 436
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=59.19 E-value=72 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=12.8
Q ss_pred CCHHHHHHHhhcCCchhHHHHHHHH
Q 022777 121 EDYNEALKHTNAGGTMELHALNVQI 145 (292)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~a~~ 145 (292)
++++.|++++.+..+++.+..++..
T Consensus 110 ~d~~~a~~~~~~~~~~~lw~~~~~~ 134 (140)
T smart00299 110 GNYEKAIEYFVKQNNPELWAEVLKA 134 (140)
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555555555554455555444433
No 437
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.59 E-value=74 Score=23.67 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=29.3
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhh
Q 022777 82 SSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTN 131 (292)
Q Consensus 82 ~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 131 (292)
...+.....+..++.++.. ++.++..+..+..+|... +..+.++.+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~--~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKL--NSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHcc--CccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3345666777777777766 566677777777777644 3445555555
No 438
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=57.25 E-value=3.5 Score=36.75 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHhhc
Q 022777 119 HEEDYNEALKHTNA 132 (292)
Q Consensus 119 ~~g~~~~A~~~~~~ 132 (292)
.+|++++|+.+-++
T Consensus 299 GRg~~~eAlDiA~~ 312 (359)
T PF10140_consen 299 GRGDFEEALDIAKR 312 (359)
T ss_dssp --------------
T ss_pred cCCchHHHHHHHHh
Confidence 34555555555554
No 439
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=56.77 E-value=59 Score=21.98 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNV 143 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a 143 (292)
..+|...+.-+-.. .|+...-...-+.+++..|+..+|+..+....++++..+++
T Consensus 22 ~~ea~ailnalP~l--i~D~~~r~vcea~llfGL~~~~~A~~~L~~~~~~eA~~Lr~ 76 (79)
T TIGR02498 22 PKEAHSILNALPQI--IPDKKDRLVCEAILLFGLNHKNDAVKLLENMDDEEAQLLRS 76 (79)
T ss_pred HHHHHHHHHhcccc--cCCHhHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHHH
Confidence 44544444333222 56656666777888888888888888888766666655543
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.31 E-value=1.1e+02 Score=30.86 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
|+.+.|++..+++ ++++.|..||...+.+|+.+-|..+|++..+ +-.+..+|+-.|+.++-.+.-.-+..
T Consensus 657 gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---fekLsfLYliTgn~eKL~Km~~iae~ 726 (1202)
T KOG0292|consen 657 GNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---FEKLSFLYLITGNLEKLSKMMKIAEI 726 (1202)
T ss_pred CCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---hhheeEEEEEeCCHHHHHHHHHHHHh
Confidence 5666666555432 3456777788888888888888777776433 33455667777777776665554443
Q ss_pred hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 165 IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 165 ~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
.+.-.. .+.. .++. |+.++=. ++++....-+-+|. .....|--++|.++.++.-..
T Consensus 727 r~D~~~--~~qn---alYl--~dv~erv----kIl~n~g~~~layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 727 RNDATG--QFQN---ALYL--GDVKERV----KILENGGQLPLAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hhhhHH--HHHH---HHHh--ccHHHHH----HHHHhcCcccHHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 332221 1111 1122 2344433 34444443333331 223456667777777776553
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.11 E-value=1.2e+02 Score=25.24 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHh-----hCCCCHH---HHHHHHHHH-HhcCCHHHHHHHHHHHHh
Q 022777 189 QEAYLIFQDFSE-----KYPMTGL---ILNGKAVCC-MHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 189 ~~A~~~~~~~~~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 234 (292)
++|...|+++.. ..|.+|. +..+.++.+ --+|+.++|+...++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555555432 4677773 344445554 458999999988888764
No 442
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.95 E-value=27 Score=22.66 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
...|.-.-+.|++++|+..|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555567888888887777765
No 443
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=13 Score=32.90 Aligned_cols=62 Identities=16% Similarity=0.005 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
.+..|+..-..++...+....+++..+..++...++++|++.++.+....|++..+.-.+..
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 35556555555566677777788889999999999999999999999889998877655443
No 444
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=1.7e+02 Score=26.95 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=33.0
Q ss_pred hhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc
Q 022777 17 FYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66 (292)
Q Consensus 17 ~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 66 (292)
.+.+.|-.|... |-..+-.++++..+..+.++...+++..|-..+.+.
T Consensus 252 ~~~~~~h~al~~--~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL 299 (482)
T KOG4322|consen 252 LNTSYYHKALNS--WFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKL 299 (482)
T ss_pred hhhhHHHHHHHH--hhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766 444444445677777888888888888887777654
No 445
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=1.9e+02 Score=27.29 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH----TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLI 208 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~ 208 (292)
|++.-.....+.++...|+.+.|+......+. +.- .......+|.++.+ .+|.+|...+..+.+....+-.+
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~--~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQ--HQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhhhhhhHHH
Confidence 45555566667788888887777777666655 111 13334556666543 45889988888888877666655
Q ss_pred HHHHH-HHH
Q 022777 209 LNGKA-VCC 216 (292)
Q Consensus 209 ~~~la-~~~ 216 (292)
|..++ .|+
T Consensus 340 Y~Yfa~cc~ 348 (546)
T KOG3783|consen 340 YTYFAGCCL 348 (546)
T ss_pred HHHHHHHHH
Confidence 55554 444
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.42 E-value=34 Score=28.75 Aligned_cols=75 Identities=8% Similarity=-0.106 Sum_probs=46.1
Q ss_pred hhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC---CCCCc-cHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 56 YQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTISSLKEWLSD---PAIGS-NATLRLIAGIIFMHEEDYNEALKH 129 (292)
Q Consensus 56 ~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 129 (292)
+..|...|++. ...-......+|..+...|++++|+..++.+... ..... .......+-.++...|+.++.+.+
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44566666543 4444445566777777777888888877777532 00111 355666677777788887776654
Q ss_pred h
Q 022777 130 T 130 (292)
Q Consensus 130 ~ 130 (292)
.
T Consensus 241 ~ 241 (247)
T PF11817_consen 241 S 241 (247)
T ss_pred H
Confidence 3
No 447
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=53.37 E-value=58 Score=25.26 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc------------C-CchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA------------G-GTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~------------~-~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
........+.-.++.|+.+.|...++. | .........+.-++..|++.+|...|..++.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345667778889999999999999986 1 3344566778888999999999999988864
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.18 E-value=50 Score=26.38 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=27.1
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDED 168 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~ 168 (292)
-+++..+..++.++...|+.++|....+++....|.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666777777788888888888888888777773
No 449
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.15 E-value=2e+02 Score=26.36 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHhCCChHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHh---ccccHHHHHHHHHHhHhh-----CCC-CHHHHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQI----DEDHTLTQLANAWLNLAV---GGSKIQEAYLIFQDFSEK-----YPM-TGLILNGK 212 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~----~p~~~~~~l~~a~~~l~~---~~~~~~~A~~~~~~~~~~-----~p~-~~~~~~~l 212 (292)
+..++++++|...-+..+.. +......-.+..|++++. ..++...-...+...+.. +.+ -..+.+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34468889988877776553 222223333445555532 234555555555554321 222 24577788
Q ss_pred HHHHHhcCCHHHHHHHHHHHH--hhCCCCHHH--HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 213 AVCCMHMGNFDEAEGLLLDAL--NKDAKDPET--LANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al--~~~p~~~~~--~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
-.+|...+.++.|.....+.. +...++..+ +|.+|.+-.-++++ |.+++-++...-|+|..
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 899999999999999888765 223333333 45567777777777 89999899989998654
No 450
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.09 E-value=2.5e+02 Score=27.25 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=8.3
Q ss_pred hcCCc--HHHHHHHHHhhCCCCh
Q 022777 252 HQGKS--TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 252 ~~g~~--a~~~~~~~~~~~P~~~ 272 (292)
+.|++ |.+.++++. +-|.++
T Consensus 517 ~~g~~~~AL~~i~~L~-liP~~~ 538 (613)
T PF04097_consen 517 HAGQYEQALDIIEKLD-LIPLDP 538 (613)
T ss_dssp HTT-HHHHHHHHHHTT--S-S-H
T ss_pred HcCCHHHHHHHHHhCC-CCCCCH
Confidence 44555 555555543 556554
No 451
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.62 E-value=78 Score=21.27 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHhhCCCCHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGL 207 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~ 207 (292)
|.+|++.+.+++...||++.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 44445555555556666654
No 452
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.30 E-value=35 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 209 LNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
+...|+-+-+.|++++|+..|.++++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555666778888888888888753
No 453
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.10 E-value=1.2e+02 Score=27.85 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcc--------ccHHHHHHHHHHh--------Hh-hCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 022777 170 TLTQLANAWLNLAVGG--------SKIQEAYLIFQDF--------SE-KYPMTG------LILNGKAVCCMHMGNFDEAE 226 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~--------~~~~~A~~~~~~~--------~~-~~p~~~------~~~~~la~~~~~~g~~~~A~ 226 (292)
++..+-.+|+|+.... .+...|...|.+. .. ..|.+| .++..-|++.+++|+-++|.
T Consensus 208 allnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAy 287 (568)
T KOG2561|consen 208 ALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAY 287 (568)
T ss_pred hhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4455555677765421 2344555554442 11 244555 34556699999999999999
Q ss_pred HHHHHHHhh
Q 022777 227 GLLLDALNK 235 (292)
Q Consensus 227 ~~~~~al~~ 235 (292)
..++.+...
T Consensus 288 e~le~a~~~ 296 (568)
T KOG2561|consen 288 EALESAHAK 296 (568)
T ss_pred HHHHHHHHH
Confidence 999988754
No 454
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=48.07 E-value=19 Score=27.02 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=46.9
Q ss_pred hhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 80 YLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
.+...+.....+..++.++..+ .+.++.....+..+|.+.+++++.++.++..++-+. ...+.++.+.|-+++|.-++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~-~~~~~~c~~~~l~~~a~~Ly 93 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDL-DKALRLCEKHGLYEEAVYLY 93 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-C-THHHHHHHTTTSHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccccCH-HHHHHHHHhcchHHHHHHHH
Confidence 3444556667777777777541 245688888888888888887888888886333111 12233445555555555444
Q ss_pred H
Q 022777 160 R 160 (292)
Q Consensus 160 ~ 160 (292)
.
T Consensus 94 ~ 94 (143)
T PF00637_consen 94 S 94 (143)
T ss_dssp H
T ss_pred H
Confidence 3
No 455
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.69 E-value=35 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
..|+-.-..|++++|+..|.+++.
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445556666666666666554
No 456
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=47.65 E-value=1.1e+02 Score=28.20 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC
Q 022777 45 LVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPDNKESTISSLKEWLSD 100 (292)
Q Consensus 45 ~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 100 (292)
.+.|.++..|..++++..++.- .-|+..+...|-+.+...|++..|+++...+..+
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4556666666666666666532 2333334444445555566666666666655544
No 457
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=47.50 E-value=81 Score=25.87 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHhHH-hhHHHHHHHHhhc
Q 022777 274 VKRAS-SGDESFERALQSV 291 (292)
Q Consensus 274 ~~~~~-~~~~~~~~~~~~~ 291 (292)
++.++ +..+.||++.+.|
T Consensus 102 lr~~K~d~KK~FdK~~kDy 120 (215)
T cd07641 102 LKGVKGDLKKPFDKAWKDY 120 (215)
T ss_pred hhhhhHHHHhHHHHHHHHH
Confidence 44455 6777777777665
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.41 E-value=41 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=17.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 022777 214 VCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~ 235 (292)
.-.-..|++++|+..|..+++.
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHH
Confidence 3344568999999999998874
No 459
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.21 E-value=1.7e+02 Score=24.23 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCc-hhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGT-MELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
......|-..... |. .-.....|-.++..+++++|+..+-.|.- +.-.....+++...|+++.|+..++..-. .
T Consensus 63 ~~~~~~Fa~~f~i---p~-~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p-~ 137 (226)
T PF13934_consen 63 SELAESFARAFGI---PP-KYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP-P 137 (226)
T ss_pred ccHHHHHHHHhCC---CH-HHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC-C
Confidence 3456666666554 43 34557778888899999999999987532 33333555667778999988888866422 2
Q ss_pred CCcH-HHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 022777 167 EDHT-LTQLANAWLNLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 167 p~~~-~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~ 200 (292)
..+. ...+. ...+. .+.+.||+.+-+...+
T Consensus 138 l~s~~~~~~~--~~~La--~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 138 LSSPEALTLY--FVALA--NGLVTEAFSFQRSYPD 168 (226)
T ss_pred CCCHHHHHHH--HHHHH--cCCHHHHHHHHHhCch
Confidence 2222 11111 11233 3458888877666433
No 460
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.05 E-value=2.1e+02 Score=27.53 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=52.0
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 225 (292)
+.+....+.+...++.-+.....+....+..+- +..+-+..++|..+|+.++.++|+ ..++..+.-+.+.|-...|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAE--FLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhh--hhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence 445556666666665554333333333333222 122235578889999999999988 4467788888888888888
Q ss_pred HHHHH
Q 022777 226 EGLLL 230 (292)
Q Consensus 226 ~~~~~ 230 (292)
...++
T Consensus 94 ~~~~~ 98 (578)
T PRK15490 94 QLILK 98 (578)
T ss_pred HHHHH
Confidence 88877
No 461
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=45.19 E-value=1e+02 Score=28.37 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 76 LLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 76 ~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
.+.+.+...|..++++..+..-+..|+-|++..+.+.+ ..++..|+|..|.++...
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm-d~fl~~~~~~~A~~V~~~ 163 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM-DHFLKKGNYKSAAKVATE 163 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH-HHHhhcccHHHHHHHHHH
Confidence 44555555566677777766666666666655444333 556677777777766654
No 462
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.11 E-value=3e+02 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=19.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
..-+...|+|++|+..+++ +.+-|.++...
T Consensus 512 ff~~~~~g~~~~AL~~i~~-L~liP~~~~~V 541 (613)
T PF04097_consen 512 FFDLYHAGQYEQALDIIEK-LDLIPLDPSEV 541 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHH-TT-S-S-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHh-CCCCCCCHHHH
Confidence 4456778889888888887 66778776553
No 463
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.70 E-value=54 Score=18.02 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHhhCCC
Q 022777 188 IQEAYLIFQDFSEKYPM 204 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~ 204 (292)
++.|..+|++.+..+|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44555555555544443
No 464
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.59 E-value=46 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
..+|..++..|++++|..+|-+|+..-|+..+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 457777888888888888888888888875543
No 465
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.83 E-value=51 Score=17.54 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHH
Q 022777 221 NFDEAEGLLLDAL 233 (292)
Q Consensus 221 ~~~~A~~~~~~al 233 (292)
+..+|...|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555544
No 466
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.73 E-value=1.5e+02 Score=22.69 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~ 170 (292)
+.....++-.+..|++.-|..+++.++..+|++.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~ 104 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE 104 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH
Confidence 3344444445555555555555555555555554
No 467
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.53 E-value=1.3e+02 Score=21.96 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
...++|...+. .++. .++ ...+..+....+.++|+|++|+..=.....|+..-..+.+-.+.|--+++...+.++.
T Consensus 20 HcH~EA~tIa~-wL~~--~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIAD-WLEQ--EGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHH-HHHH--TTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34566544443 3333 343 3445566667788999999995444445566666666667778888888887776554
Q ss_pred h
Q 022777 164 Q 164 (292)
Q Consensus 164 ~ 164 (292)
.
T Consensus 97 ~ 97 (116)
T PF09477_consen 97 S 97 (116)
T ss_dssp T
T ss_pred h
Confidence 3
No 468
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.93 E-value=1.7e+02 Score=28.07 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHhhc--C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHH
Q 022777 116 IFMHEEDYNEALKHTNA--G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~--~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~ 190 (292)
.+.++...+.+....+. | .+.-.....+..+-..|..++|-..|++....+|++.....+.. ....|-..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 92 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARR----LYNTGLAKD 92 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHH----HHhhhhhhH
Confidence 34567777877777765 3 22334556677888899999999999999999999754333322 223455788
Q ss_pred HHHHHHHh
Q 022777 191 AYLIFQDF 198 (292)
Q Consensus 191 A~~~~~~~ 198 (292)
|..+++++
T Consensus 93 ~~~~~~~~ 100 (578)
T PRK15490 93 AQLILKKV 100 (578)
T ss_pred HHHHHHHh
Confidence 88887743
No 469
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.65 E-value=54 Score=32.30 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=80.9
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH------HHHHHHHHH-HHHhccccHHHHHHHHHHhHhh-CCCCH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT------LTQLANAWL-NLAVGGSKIQEAYLIFQDFSEK-YPMTG 206 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~------~~~l~~a~~-~l~~~~~~~~~A~~~~~~~~~~-~p~~~ 206 (292)
+++....+-.-|.-..+|+.-+++.+...++ |+.. ...+..+++ +-....|+-++|+...-.+++. .|-.|
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4556666666677778888888877776555 3221 001111111 1122347899999998888765 55677
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 207 LILNGKAVCCMH---------MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 207 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+.+...|.+|-. .+..+.|++.|+++.+..|.... -+|++.++...|+-
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEH 336 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhh
Confidence 888888888743 46778899999999999998654 35888888777764
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.83 E-value=2.4e+02 Score=25.48 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=38.9
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHH--HHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGL--ILN--GKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~--~~~--~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
..++|..|..+|..+...-|.+.. .+. ..|.-+-..-++.+|.+.++..+..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 457899999999999886444443 333 3455566789999999999998765
No 471
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=41.73 E-value=99 Score=20.20 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALN 142 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 142 (292)
.|+...-...-+.+++..|+..+|+..+....++++..++
T Consensus 23 i~D~~~r~~c~alllfGL~~~~~Al~~L~~~~~eeA~~Lr 62 (66)
T PF06287_consen 23 IPDEEDRAVCEALLLFGLGEQAAALQLLADSDSEEAQALR 62 (66)
T ss_pred cCCHhHHHHHHHHHHHHcCChHHHHHHHhCCChHHHHHHH
Confidence 4665566677788888999999999988876666665554
No 472
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.70 E-value=2.4e+02 Score=29.03 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.+..|=+-.++++-...| ....-.+-.++|+|++|+..+.+
T Consensus 886 kDPKEYLPfL~~L~~l~~-----~~rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 886 KDPKEYLPFLQELQKLPP-----LYRRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred cChHHHHHHHHHHHhCCh-----hheeeeHhhhhCCHHHHHHHHHh
Confidence 345555666666655543 22566677788888888887765
No 473
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.66 E-value=1.4e+02 Score=21.80 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=52.7
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--H
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--T 257 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a 257 (292)
.+..|....+||-.+.+-+-......-.+..-....++..|+|++| +... .....|+.--.++.+-.+.|-. +
T Consensus 14 L~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~--~~~~~pdL~p~~AL~a~klGL~~~~ 88 (116)
T PF09477_consen 14 LMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLP--QCHCYPDLEPWAALCAWKLGLASAL 88 (116)
T ss_dssp HHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHH--TTS--GGGHHHHHHHHHHCT-HHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhc--ccCCCccHHHHHHHHHHhhccHHHH
Confidence 3456777789998888877655543445666678889999999999 2222 2333344444455566677765 4
Q ss_pred HHHHHHHHhhCCCChhHHhHH
Q 022777 258 SRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 258 ~~~~~~~~~~~P~~~~~~~~~ 278 (292)
...+.++ -...+|....|.
T Consensus 89 e~~l~rl--a~~g~~~~q~Fa 107 (116)
T PF09477_consen 89 ESRLTRL--ASSGSPELQAFA 107 (116)
T ss_dssp HHHHHHH--CT-SSHHHHHHH
T ss_pred HHHHHHH--HhCCCHHHHHHH
Confidence 4445443 244556555553
No 474
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=41.57 E-value=1.1e+02 Score=20.50 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNV 143 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a 143 (292)
.|+...-.+..+.+++..++..+|+..+.....+++-.++.
T Consensus 24 IpD~~~r~vC~alllfGLne~~~A~~~La~~~~~eA~~Lr~ 64 (75)
T PRK15356 24 VPDKKLQLVCLALLLAGLNEPLKAAKILSDIDLPEAMALRL 64 (75)
T ss_pred cCCHHHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHHH
Confidence 57766777888999999999999999998877777666553
No 475
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=41.22 E-value=2.6e+02 Score=24.96 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc----------CCchhHHHHHHHHH-HhCCChHHHHHHHHHHHhhCCCc--HHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA----------GGTMELHALNVQIF-LKMHRSDYAERQLRAMQQIDEDH--TLTQL 174 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~~~~~~~a~~~-~~~~~~~~A~~~l~~~~~~~p~~--~~~~l 174 (292)
.....+|.+|...|+.++=-..... +........+.... ...+.++.-+.++.+++++.... ..++.
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq 128 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ 128 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456678888888887765555443 11112222222222 22344555666677776653222 11111
Q ss_pred --HHHHHHHHhccccHHHHHHHHHHhHhh----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 175 --ANAWLNLAVGGSKIQEAYLIFQDFSEK----Y--PMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 175 --~~a~~~l~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
.--.+.++...++|.+|+.....++.. + +.=.+++..-..++....+..+|...+..|-.
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 111234455567788888887776542 1 11234566667778888888888887776643
No 476
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.12 E-value=1.2e+02 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.008 Sum_probs=35.8
Q ss_pred HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
..+.+++.+++.--.-+....|.-..+++..+.+|.-.++++-|.+.+.-.....|.++++
T Consensus 103 ~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 103 QLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 3344555555555555555566666666666666666666666666655555566666443
No 477
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=41.00 E-value=57 Score=17.21 Aligned_cols=25 Identities=20% Similarity=0.020 Sum_probs=15.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH
Q 022777 226 EGLLLDALNKDAKDPETLANLVVCS 250 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~~~~~l~~~~ 250 (292)
+.+..+++..+|.|..+|...-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4556667777777777775554443
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=2.5e+02 Score=24.56 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC---C
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDED------HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM---T 205 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~---~ 205 (292)
..++...+|..|.+.++.+.+.+.+++..+..-. -.+..+-+++++ ..+.-..+.++..+.+++...+ -
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y--~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY--GDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 3567889999999999999999999988775311 122222333322 2222357777777888877655 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
-.+-...|...+...++.+|-..+...+.......
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccc
Confidence 24566689999999999999999998886655433
No 479
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.51 E-value=2.4e+02 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=13.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHh
Q 022777 73 AVKLLALYLSSPDNKESTISSLKEWL 98 (292)
Q Consensus 73 a~~~la~~~~~~~~~~~A~~~~~~~l 98 (292)
++..+..+..+.+++++-...|.+++
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44444455555555555555555544
No 480
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.77 E-value=2.9e+02 Score=25.04 Aligned_cols=125 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL-------ILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
+|...........+-.....++|..|..+|+++....+.... .....|..+...-++++|.+.+++.+.-...
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~ 203 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLA 203 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhh
Q ss_pred CHHHHHH------HHHHHHhcCCc-HHHHHHHHHhhCCCChhHHhH------HhhHHHHHHHHhh
Q 022777 239 DPETLAN------LVVCSLHQGKS-TSRYLNQLKLTHPDHMLVKRA------SSGDESFERALQS 290 (292)
Q Consensus 239 ~~~~~~~------l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~------~~~~~~~~~~~~~ 290 (292)
..+++.+ ......-.+.. .........+.+|--+.+.++ -...+.||+|+..
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r 268 (380)
T TIGR02710 204 LYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAAR 268 (380)
T ss_pred hhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHH
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.88 E-value=1.9e+02 Score=26.38 Aligned_cols=134 Identities=12% Similarity=0.041 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc--------HH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH--------TL 171 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~--------~~ 171 (292)
.++.-+|.-|...|+.+.|++.|.+ .........+..+.+-+|+|..-.....++.+....+ +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4567789999999999999999987 1234456666677778899998888888776652111 01
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhh--------CCCCHHHHHHHHH-HHHhcCCHH---HHHHHHHHHHhhCCCC
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEK--------YPMTGLILNGKAV-CCMHMGNFD---EAEGLLLDALNKDAKD 239 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~-~~~~~g~~~---~A~~~~~~al~~~p~~ 239 (292)
..=+-+.+++.. ++|..|...|-.+.-. .|.+..+|.++.. .-+...++. ..-..|...+++.|.-
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 111112334433 3588887777664321 3445555533322 112222222 1224566667777775
Q ss_pred HHHH
Q 022777 240 PETL 243 (292)
Q Consensus 240 ~~~~ 243 (292)
-+++
T Consensus 309 r~il 312 (466)
T KOG0686|consen 309 REIL 312 (466)
T ss_pred HHHH
Confidence 5544
No 482
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.39 E-value=2.3e+02 Score=24.55 Aligned_cols=120 Identities=10% Similarity=0.099 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH---HhcCCHHH---HHH
Q 022777 154 YAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC---MHMGNFDE---AEG 227 (292)
Q Consensus 154 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~---~~~g~~~~---A~~ 227 (292)
.-+..+..+++.+|.+...+...-|+.-..-..++..-..+.+++++.+|.|--.|...-+++ ...+++.. -.+
T Consensus 92 neld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e 171 (328)
T COG5536 92 NELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE 171 (328)
T ss_pred cHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH
Confidence 344557777788888764444444443333234467777788889998888776555555554 22233333 345
Q ss_pred HHHHHHhhCCCCHHHHHHH---HHHHHhcCCc-HHHHHH-------HHHhhCCCChh
Q 022777 228 LLLDALNKDAKDPETLANL---VVCSLHQGKS-TSRYLN-------QLKLTHPDHML 273 (292)
Q Consensus 228 ~~~~al~~~p~~~~~~~~l---~~~~~~~g~~-a~~~~~-------~~~~~~P~~~~ 273 (292)
+-..++..++-|+.+|-+. .......|+. .++++. ...-.+|++..
T Consensus 172 ytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 172 YTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 5556677899999998776 4444556666 443232 22235677754
No 483
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.31 E-value=80 Score=20.83 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 022777 213 AVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~ 234 (292)
|.-.-+.|++++|+..|.++++
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3444446777777777666654
No 484
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=38.23 E-value=3.1e+02 Score=24.85 Aligned_cols=112 Identities=18% Similarity=0.082 Sum_probs=66.1
Q ss_pred HHHHhccccHHHHHHHHHHhHh-hCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHH-
Q 022777 179 LNLAVGGSKIQEAYLIFQDFSE-KYPM--------TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD-----PETL- 243 (292)
Q Consensus 179 ~~l~~~~~~~~~A~~~~~~~~~-~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~- 243 (292)
+.++...++++-+..+++.... .-|+ -..+++.+|.+++...++-+|-..+.+|+..-|+- ..++
T Consensus 184 ~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~ 263 (413)
T COG5600 184 FQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILP 263 (413)
T ss_pred HHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehh
Confidence 3344444456555555554332 1222 23578889999999999999999999999887772 1122
Q ss_pred HHHHHHHHhcCCc-HHHHHHHHHhhCCCChhHHhHH-hhHHHHHHHHhh
Q 022777 244 ANLVVCSLHQGKS-TSRYLNQLKLTHPDHMLVKRAS-SGDESFERALQS 290 (292)
Q Consensus 244 ~~l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~~-~~~~~~~~~~~~ 290 (292)
+.+-.++...+.+ ...++++-....--.|.++.+. ...++|+.++++
T Consensus 264 ~~ipt~Llv~~~~Ptk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ 312 (413)
T COG5600 264 YYIPTSLLVNKFPPTKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSR 312 (413)
T ss_pred HHhhHHHHhCCCCCchHHHHhccccchhHHHHHHHHcCCHHHHHHHHHH
Confidence 2222334444444 5556655443444456677663 455777777653
No 485
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.04 E-value=71 Score=21.69 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
|+.|+....+++..+ +.|+.++|+.+|++++..
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 666766666655543 447777777777777653
No 486
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.57 E-value=2.2e+02 Score=23.00 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=17.1
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLI 208 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 208 (292)
.++|.+++|.+++++... +|++...
T Consensus 122 m~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 122 MENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HhcCchHHHHHHHHHHhc-CCCchhH
Confidence 355678888888888777 6665543
No 487
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.30 E-value=2.5e+02 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 188 IQEAYLIFQDFSEKYPM---TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.++.+.++..++..-|+ .+.+|.-+|.++-..|.+++.+.+|++|+.......+=+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieEl 177 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEEL 177 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHH
Confidence 56778888888888887 356899999999999999999999999998877755433
No 488
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.69 E-value=69 Score=21.24 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~ 234 (292)
.|.-.-..|++++|+..|.+++.
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444556777777777766654
No 489
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=17 Score=32.14 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
....+++.+..+.+.+..|+..-..+++.++....+++..+..+....++ +.+.++.+....|++..+..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 34556889999999999999999999999999999999999998888877 88999999999999987654
No 490
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=35.68 E-value=77 Score=17.22 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 022777 222 FDEAEGLLLDAL 233 (292)
Q Consensus 222 ~~~A~~~~~~al 233 (292)
.++|...|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 344444444443
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.61 E-value=3.3e+02 Score=24.42 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH-H
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIF-M 118 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~-~ 118 (292)
...++++|.-|++.++++.|+..+++++.....+ =..+. ...+++++.+...-. +|+- -..+++.. .
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~A----Ke~~~--~ei~ka~~e~ds~k~---~~N~---~~~~ae~s~~ 192 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANERQRRA----KEFYY--EEVQKAIKEIDSSKH---NINM---ERSRAEVSEI 192 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHhccC---CCch---hHHHHHHHHH
Confidence 3456777888999999999999988772211111 01111 234455555443321 2332 12222211 1
Q ss_pred hcCCHHHHHHHhhc---CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 119 HEEDYNEALKHTNA---GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 119 ~~g~~~~A~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
-+..|.-=...|+. -.+|=+-++.+..+...|++.++...+++..-+.|+.
T Consensus 193 i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 193 LNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 12222222333333 2344455666777778888999999999988888774
No 492
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=34.44 E-value=3.8e+02 Score=24.82 Aligned_cols=87 Identities=14% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhC--------C-----CcH-------HHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQID--------E-----DHT-------LTQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~--------p-----~~~-------~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
-+.-++++++|..|..-|+.++++- | +++ ...+. .+|+. .++.+-|+..-.+-+..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv--~CYL~--~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV--TCYLR--MRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH--Hhhhh--cCCCchHHHHHhhhhhc
Confidence 3556677777777777777776641 1 111 11122 23343 34588888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+|..+.-+..-|.|...+.+|.+|-+.+--+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988999999999999999987655443
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=1.8e+02 Score=20.91 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=38.1
Q ss_pred HHHHhHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 194 IFQDFSEK-YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 194 ~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
.+.++... -+-.|.++-.+|.+|...|+.+.|.+.|+.--.+.|.....
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444333 34456788899999999999999999999988899987654
No 494
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.98 E-value=99 Score=20.62 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 022777 213 AVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~ 234 (292)
|.-.-..|++++|...|.++++
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3444456778877777777765
No 495
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=33.83 E-value=3.5e+02 Score=24.23 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=130.5
Q ss_pred hhhhhhhhhhccHHHHHhhc-cCCCC--CCch-------HHHHHHHHHHHHHhhCChhHHHHhhhhc--------CCchH
Q 022777 10 LFNLRNNFYLGAYQAAINNS-DLTNL--PPDD-------AVERDCLVYRSYIALGSYQLVISEIDES--------AATPL 71 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~-~~~~~--~p~~-------~~~a~~~la~~~~~~g~~~~Al~~~~~a--------~~~~~ 71 (292)
+..+.......++++++... .++.. .|.+ ..+...-+++.|...|+..+-...++.. .+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45566666777788888883 34431 1221 2344556789999999988766555532 22233
Q ss_pred HHHHHHHHhhcC-CCChhHHHHHHHHHhcCCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHhhc-----------CC
Q 022777 72 QAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGS-----NATLRLIAGIIFMHEEDYNEALKHTNA-----------GG 134 (292)
Q Consensus 72 ~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~-----------~~ 134 (292)
...+.|.+.... .+..+.-+.++.++++=. ..+ ....-..+..+|...++|.+|+..... +.
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA-~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWA-KREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445555554443 233445566666665310 011 123335678899999999999988764 23
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHH-----hccccHHHHHHHHHHhHhhCC---CC
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-TLTQLANAWLNLA-----VGGSKIQEAYLIFQDFSEKYP---MT 205 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~-----~~~~~~~~A~~~~~~~~~~~p---~~ 205 (292)
-.+....-...|....+..+|...+..+......- ...+ .++.+-+. ....+|.-|+..|=++.+.+. ++
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPq-lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~ 245 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQ-LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD 245 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHH-HHHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence 45566677788888999999888887765431100 0000 12222221 123567888888888776432 22
Q ss_pred HHHH---HHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHH
Q 022777 206 GLIL---NGKAVCCMHMGNFDEAEGLLL--DALNKDAKDPETLANLV 247 (292)
Q Consensus 206 ~~~~---~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~ 247 (292)
+.+. -.+-.|-...+..++--..+. .+++....+.+++-..+
T Consensus 246 v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 246 VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 3333 333445555677666444443 33443333444443333
No 496
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.79 E-value=2.2e+02 Score=26.00 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=10.3
Q ss_pred HHHHHHhhCChhHHHHhhhh
Q 022777 46 VYRSYIALGSYQLVISEIDE 65 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~ 65 (292)
++..|...|+++.|+..|-+
T Consensus 156 l~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHhccHHHHHhhhhh
Confidence 44455555555555555544
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=33.48 E-value=1e+02 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+..|+.++++|.. .++|+.|.++|.++...|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4567777777654 77788999999988887764
No 498
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.39 E-value=2.4e+02 Score=22.22 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=12.7
Q ss_pred HHhCCChHHHHHHHHHHHhh
Q 022777 146 FLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~ 165 (292)
++..|+|+.+...|.++...
T Consensus 96 ~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHH
Confidence 34566677766666666554
No 499
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.31 E-value=2.9e+02 Score=23.07 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh-----hCCCCHHH---HHHHHHHH-HhcCCc--HHHHHHHH
Q 022777 223 DEAEGLLLDALN-----KDAKDPET---LANLVVCS-LHQGKS--TSRYLNQL 264 (292)
Q Consensus 223 ~~A~~~~~~al~-----~~p~~~~~---~~~l~~~~-~~~g~~--a~~~~~~~ 264 (292)
+.|...|++|+. +.|.||.- ..|.++++ ...|+. |.++.+++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 668888888875 47888854 35566654 456776 55544443
No 500
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.99 E-value=1.1e+02 Score=20.06 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~ 234 (292)
.|.-.-..|++++|+..|..+++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555777777777777664
Done!