Query 022777
Match_columns 292
No_of_seqs 146 out of 1804
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_A Coatomer subunit epsilo 100.0 1.2E-44 4.2E-49 312.5 35.8 285 8-292 1-289 (291)
2 3mv2_B Coatomer subunit epsilo 100.0 1.9E-36 6.4E-41 259.7 23.7 272 4-292 11-307 (310)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2E-30 6.8E-35 230.9 27.2 272 15-291 76-362 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-30 9E-35 230.1 26.0 272 15-291 42-328 (388)
5 3hym_B Cell division cycle pro 100.0 6.8E-29 2.3E-33 214.8 24.6 261 12-277 28-309 (330)
6 3ieg_A DNAJ homolog subfamily 100.0 5.9E-28 2E-32 210.8 29.4 258 15-277 46-345 (359)
7 3ieg_A DNAJ homolog subfamily 100.0 8.3E-28 2.8E-32 209.9 29.0 274 13-291 10-329 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 2.2E-27 7.6E-32 214.6 27.9 193 81-277 153-368 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 3.9E-27 1.3E-31 213.0 27.3 275 12-291 32-352 (450)
10 1fch_A Peroxisomal targeting s 100.0 1E-27 3.6E-32 211.0 22.4 252 15-271 34-318 (368)
11 3hym_B Cell division cycle pro 100.0 4.6E-27 1.6E-31 203.3 24.0 256 31-291 14-293 (330)
12 4eqf_A PEX5-related protein; a 100.0 8.3E-27 2.8E-31 205.7 23.5 233 35-271 60-314 (365)
13 2xpi_A Anaphase-promoting comp 100.0 1.7E-26 5.7E-31 216.3 26.8 230 43-276 342-588 (597)
14 2xpi_A Anaphase-promoting comp 100.0 5.7E-26 1.9E-30 212.6 27.1 273 13-291 279-573 (597)
15 3fp2_A TPR repeat-containing p 99.9 2.2E-26 7.4E-31 212.4 23.0 271 15-291 34-451 (537)
16 1fch_A Peroxisomal targeting s 99.9 2.4E-26 8.2E-31 202.3 21.0 249 12-266 70-358 (368)
17 3cv0_A Peroxisome targeting si 99.9 2.8E-27 9.7E-32 204.3 14.8 248 15-267 30-315 (327)
18 3cv0_A Peroxisome targeting si 99.9 7.6E-26 2.6E-30 195.3 23.0 257 31-291 12-309 (327)
19 4eqf_A PEX5-related protein; a 99.9 1E-26 3.5E-31 205.0 17.0 246 12-262 71-351 (365)
20 2pl2_A Hypothetical conserved 99.9 1.4E-25 4.9E-30 184.7 21.2 193 68-265 2-212 (217)
21 2gw1_A Mitochondrial precursor 99.9 1.4E-25 4.7E-30 205.6 22.7 254 19-278 202-489 (514)
22 2gw1_A Mitochondrial precursor 99.9 1.4E-25 4.6E-30 205.7 21.7 166 104-272 234-406 (514)
23 3uq3_A Heat shock protein STI1 99.9 8.2E-25 2.8E-29 182.5 23.1 229 39-279 4-254 (258)
24 3u4t_A TPR repeat-containing p 99.9 7E-25 2.4E-29 185.1 22.3 235 42-279 5-262 (272)
25 2h6f_A Protein farnesyltransfe 99.9 3.9E-25 1.3E-29 197.2 20.8 237 33-274 91-355 (382)
26 3fp2_A TPR repeat-containing p 99.9 7.6E-25 2.6E-29 202.1 23.3 253 20-277 216-501 (537)
27 2pl2_A Hypothetical conserved 99.9 4.5E-24 1.5E-28 175.7 23.0 187 104-291 2-208 (217)
28 3u4t_A TPR repeat-containing p 99.9 9.3E-25 3.2E-29 184.3 18.4 244 7-253 3-268 (272)
29 2h6f_A Protein farnesyltransfe 99.9 9.7E-25 3.3E-29 194.7 17.1 234 15-252 106-365 (382)
30 2q7f_A YRRB protein; TPR, prot 99.9 4.4E-23 1.5E-27 170.8 23.3 206 71-280 23-235 (243)
31 3mkr_A Coatomer subunit epsilo 99.9 8.6E-23 2.9E-27 175.7 25.9 222 10-243 38-272 (291)
32 3vtx_A MAMA; tetratricopeptide 99.9 4.5E-23 1.5E-27 164.5 21.5 167 105-273 3-176 (184)
33 2q7f_A YRRB protein; TPR, prot 99.9 2E-23 6.7E-28 172.9 19.8 212 39-254 22-241 (243)
34 2vq2_A PILW, putative fimbrial 99.9 2.5E-22 8.4E-27 164.0 25.9 208 68-279 5-223 (225)
35 2ho1_A Type 4 fimbrial biogene 99.9 1.9E-22 6.6E-27 168.3 25.3 205 71-279 37-250 (252)
36 1ouv_A Conserved hypothetical 99.9 6.9E-22 2.4E-26 167.5 26.2 229 35-274 2-258 (273)
37 2ho1_A Type 4 fimbrial biogene 99.9 7.1E-22 2.4E-26 164.8 25.6 208 33-244 30-247 (252)
38 3uq3_A Heat shock protein STI1 99.9 4.1E-23 1.4E-27 172.2 17.0 226 10-249 8-256 (258)
39 3vtx_A MAMA; tetratricopeptide 99.9 1.7E-22 5.7E-27 161.2 19.2 168 70-241 4-176 (184)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.9E-22 6.4E-27 170.1 18.9 216 18-239 17-248 (275)
41 2vq2_A PILW, putative fimbrial 99.9 4E-21 1.4E-25 156.7 25.6 207 35-246 4-222 (225)
42 4g1t_A Interferon-induced prot 99.9 5.3E-22 1.8E-26 180.6 22.3 254 15-273 60-369 (472)
43 4abn_A Tetratricopeptide repea 99.9 3.2E-21 1.1E-25 176.8 23.0 184 70-256 101-308 (474)
44 4g1t_A Interferon-induced prot 99.9 3.9E-21 1.3E-25 174.8 23.4 252 40-291 51-357 (472)
45 4abn_A Tetratricopeptide repea 99.9 1.3E-21 4.4E-26 179.5 19.9 201 86-291 83-315 (474)
46 4i17_A Hypothetical protein; T 99.9 4.3E-21 1.5E-25 158.3 21.0 197 72-279 8-221 (228)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-22 1.8E-26 167.2 15.6 239 47-291 12-269 (275)
48 4gyw_A UDP-N-acetylglucosamine 99.9 1.6E-21 5.4E-26 186.7 20.7 168 102-271 4-178 (723)
49 2ond_A Cleavage stimulation fa 99.9 3E-20 1E-24 160.8 24.2 215 57-274 33-277 (308)
50 4i17_A Hypothetical protein; T 99.9 1.4E-20 4.8E-25 155.2 19.5 201 40-251 7-225 (228)
51 3qky_A Outer membrane assembly 99.9 3.9E-20 1.3E-24 155.8 22.0 181 103-283 11-240 (261)
52 3sf4_A G-protein-signaling mod 99.9 3E-21 1E-25 171.3 15.2 254 12-269 15-338 (406)
53 1ouv_A Conserved hypothetical 99.9 2.9E-20 1E-24 157.4 19.5 229 4-243 3-259 (273)
54 3ro2_A PINS homolog, G-protein 99.9 2.2E-21 7.5E-26 167.0 12.3 256 12-271 11-336 (338)
55 4a1s_A PINS, partner of inscut 99.9 2.4E-21 8.1E-26 173.1 12.7 256 14-271 56-376 (411)
56 2xm6_A Protein corresponding t 99.8 4.2E-19 1.4E-23 163.1 24.8 275 4-291 36-354 (490)
57 3as5_A MAMA; tetratricopeptide 99.8 5.1E-19 1.8E-23 139.5 21.5 172 104-277 5-183 (186)
58 4gyw_A UDP-N-acetylglucosamine 99.8 3.9E-20 1.3E-24 177.1 17.6 169 67-239 5-178 (723)
59 3sf4_A G-protein-signaling mod 99.8 3.2E-20 1.1E-24 164.7 15.6 251 39-291 8-330 (406)
60 3qky_A Outer membrane assembly 99.8 2.2E-19 7.4E-24 151.3 18.6 182 67-252 11-244 (261)
61 2ond_A Cleavage stimulation fa 99.8 1.6E-19 5.5E-24 156.1 18.2 240 23-277 33-302 (308)
62 2pzi_A Probable serine/threoni 99.8 9.5E-20 3.2E-24 174.1 17.7 201 67-275 390-610 (681)
63 2xm6_A Protein corresponding t 99.8 1.2E-18 4.2E-23 160.0 23.9 259 5-276 145-444 (490)
64 3ro2_A PINS homolog, G-protein 99.8 9.5E-20 3.3E-24 156.7 14.7 250 40-291 5-326 (338)
65 4a1s_A PINS, partner of inscut 99.8 4.5E-20 1.6E-24 164.7 13.1 251 39-291 47-366 (411)
66 4ga2_A E3 SUMO-protein ligase 99.8 8E-20 2.8E-24 141.5 11.8 134 142-277 3-139 (150)
67 4ga2_A E3 SUMO-protein ligase 99.8 1.5E-19 5.1E-24 140.0 12.7 142 112-255 2-149 (150)
68 3urz_A Uncharacterized protein 99.8 1E-18 3.6E-23 142.5 16.5 161 75-238 8-189 (208)
69 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.4E-18 1.5E-22 140.4 20.2 166 108-273 5-219 (225)
70 3as5_A MAMA; tetratricopeptide 99.8 3.4E-18 1.2E-22 134.7 18.6 167 71-241 8-179 (186)
71 3nf1_A KLC 1, kinesin light ch 99.8 2E-18 6.8E-23 147.5 18.4 236 32-270 20-310 (311)
72 2r5s_A Uncharacterized protein 99.8 3.9E-18 1.3E-22 135.3 15.9 162 103-266 2-172 (176)
73 3urz_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 138.8 16.6 166 106-274 3-193 (208)
74 3nf1_A KLC 1, kinesin light ch 99.8 4.9E-18 1.7E-22 145.1 17.3 224 14-238 35-310 (311)
75 2ooe_A Cleavage stimulation fa 99.8 1.6E-17 5.5E-22 154.0 21.9 212 58-272 256-497 (530)
76 2pzi_A Probable serine/threoni 99.8 4.6E-18 1.6E-22 162.5 16.7 183 103-291 390-599 (681)
77 1hz4_A MALT regulatory protein 99.8 2.8E-17 9.4E-22 145.2 20.4 265 13-277 21-332 (373)
78 3qou_A Protein YBBN; thioredox 99.8 3.6E-17 1.2E-21 140.2 20.0 162 103-266 113-283 (287)
79 2yhc_A BAMD, UPF0169 lipoprote 99.8 3E-17 1E-21 135.4 18.0 186 40-240 4-218 (225)
80 3ulq_A Response regulator aspa 99.8 2.7E-17 9.3E-22 146.0 17.8 224 43-269 106-370 (383)
81 3ulq_A Response regulator aspa 99.8 2.3E-17 7.9E-22 146.5 16.7 273 13-291 19-362 (383)
82 2ooe_A Cleavage stimulation fa 99.7 5.6E-16 1.9E-20 143.6 25.3 182 88-273 255-460 (530)
83 1qqe_A Vesicular transport pro 99.7 1.1E-17 3.7E-22 143.6 12.6 206 55-273 32-275 (292)
84 4gco_A Protein STI-1; structur 99.7 5.6E-17 1.9E-21 121.7 14.9 115 133-249 10-124 (126)
85 3gyz_A Chaperone protein IPGC; 99.7 6.4E-18 2.2E-22 131.0 9.7 115 157-273 23-139 (151)
86 3qou_A Protein YBBN; thioredox 99.7 1.2E-16 4E-21 137.0 18.4 170 61-234 107-283 (287)
87 3edt_B KLC 2, kinesin light ch 99.7 7.4E-17 2.5E-21 135.6 15.6 130 104-235 40-198 (283)
88 2r5s_A Uncharacterized protein 99.7 5.3E-17 1.8E-21 128.6 13.1 159 71-234 6-172 (176)
89 3e4b_A ALGK; tetratricopeptide 99.7 3.6E-17 1.2E-21 149.0 13.6 158 107-273 141-319 (452)
90 4gco_A Protein STI-1; structur 99.7 1.6E-16 5.4E-21 119.2 14.7 115 162-278 5-121 (126)
91 3edt_B KLC 2, kinesin light ch 99.7 5.9E-17 2E-21 136.2 13.7 215 21-236 23-282 (283)
92 2vsy_A XCC0866; transferase, g 99.7 2.4E-16 8E-21 147.4 17.8 160 84-247 2-169 (568)
93 2vgx_A Chaperone SYCD; alterna 99.7 8.6E-17 2.9E-21 124.1 12.3 127 157-285 8-136 (148)
94 3q15_A PSP28, response regulat 99.7 4.9E-16 1.7E-20 137.8 18.5 223 42-267 103-365 (378)
95 3q15_A PSP28, response regulat 99.7 4.7E-16 1.6E-20 137.9 18.4 221 15-236 110-366 (378)
96 1qqe_A Vesicular transport pro 99.7 1.9E-16 6.5E-21 135.8 15.1 200 46-249 43-283 (292)
97 3dra_A Protein farnesyltransfe 99.7 4E-15 1.4E-19 128.2 22.1 225 46-274 38-295 (306)
98 3e4b_A ALGK; tetratricopeptide 99.7 4.9E-16 1.7E-20 141.5 16.8 219 41-269 142-389 (452)
99 2vsy_A XCC0866; transferase, g 99.7 1.6E-15 5.6E-20 141.7 19.6 153 120-274 2-164 (568)
100 2xcb_A PCRH, regulatory protei 99.7 4E-16 1.4E-20 119.2 12.8 126 157-284 5-132 (142)
101 3dra_A Protein farnesyltransfe 99.7 3E-14 1E-18 122.7 24.5 205 81-289 43-279 (306)
102 3rjv_A Putative SEL1 repeat pr 99.7 6.7E-15 2.3E-19 120.3 18.2 171 90-268 5-198 (212)
103 2fo7_A Synthetic consensus TPR 99.7 1.5E-14 5.2E-19 107.3 18.7 133 137-271 2-136 (136)
104 3gyz_A Chaperone protein IPGC; 99.6 9E-16 3.1E-20 118.8 11.2 129 108-240 10-138 (151)
105 4f3v_A ESX-1 secretion system 99.6 1E-15 3.5E-20 129.5 11.7 196 43-246 10-247 (282)
106 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-14 3.8E-19 118.9 17.6 185 57-249 3-209 (212)
107 1xi4_A Clathrin heavy chain; a 99.6 1.1E-13 3.6E-18 137.1 26.6 249 5-273 983-1315(1630)
108 1hz4_A MALT regulatory protein 99.6 2.6E-14 8.9E-19 126.0 20.5 249 39-291 13-316 (373)
109 1xi4_A Clathrin heavy chain; a 99.6 5.8E-14 2E-18 138.9 23.9 250 18-288 1088-1375(1630)
110 4f3v_A ESX-1 secretion system 99.6 5.4E-15 1.8E-19 125.1 14.3 197 74-277 10-246 (282)
111 1p5q_A FKBP52, FK506-binding p 99.6 8.3E-17 2.9E-21 141.0 3.4 146 119-266 125-293 (336)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.6 4.5E-14 1.5E-18 114.4 19.2 141 106-248 5-163 (213)
113 2c2l_A CHIP, carboxy terminus 99.6 8.3E-16 2.8E-20 131.3 8.9 190 69-267 2-199 (281)
114 2fo7_A Synthetic consensus TPR 99.6 4.8E-14 1.7E-18 104.6 17.6 130 108-239 2-136 (136)
115 2e2e_A Formate-dependent nitri 99.6 8.2E-15 2.8E-19 115.6 13.6 130 147-278 21-155 (177)
116 3upv_A Heat shock protein STI1 99.6 3.2E-14 1.1E-18 105.9 15.1 114 136-251 4-123 (126)
117 3dss_A Geranylgeranyl transfer 99.6 5.7E-13 2E-17 115.6 24.8 222 50-273 39-310 (331)
118 2ifu_A Gamma-SNAP; membrane fu 99.6 1.9E-14 6.3E-19 124.2 15.1 171 53-240 29-228 (307)
119 2lni_A Stress-induced-phosphop 99.6 4.6E-14 1.6E-18 105.0 14.9 121 133-255 13-133 (133)
120 2vyi_A SGTA protein; chaperone 99.6 8.8E-14 3E-18 102.8 16.1 121 134-256 10-130 (131)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.3E-13 4.4E-18 111.7 17.6 131 138-273 8-156 (213)
122 1b89_A Protein (clathrin heavy 99.6 3.4E-15 1.2E-19 133.3 8.6 213 15-254 41-255 (449)
123 3sz7_A HSC70 cochaperone (SGT) 99.6 4.9E-14 1.7E-18 109.9 14.1 116 134-251 9-124 (164)
124 2vgx_A Chaperone SYCD; alterna 99.6 4.3E-14 1.5E-18 108.8 13.3 109 133-243 18-126 (148)
125 2fbn_A 70 kDa peptidylprolyl i 99.6 2.5E-14 8.7E-19 115.1 12.5 145 110-256 7-172 (198)
126 2xcb_A PCRH, regulatory protei 99.6 3.8E-14 1.3E-18 108.1 12.6 112 133-246 15-126 (142)
127 3dss_A Geranylgeranyl transfer 99.6 7.4E-13 2.5E-17 114.8 22.1 188 84-275 42-275 (331)
128 3upv_A Heat shock protein STI1 99.6 9.5E-14 3.3E-18 103.2 14.2 97 184-280 16-120 (126)
129 3mv2_B Coatomer subunit epsilo 99.6 3.8E-13 1.3E-17 115.2 19.4 212 10-243 49-290 (310)
130 1a17_A Serine/threonine protei 99.6 3.4E-13 1.2E-17 104.3 17.4 129 136-266 13-145 (166)
131 1na0_A Designed protein CTPR3; 99.5 7E-13 2.4E-17 97.1 17.4 117 136-254 9-125 (125)
132 1elw_A TPR1-domain of HOP; HOP 99.5 6.2E-13 2.1E-17 96.4 16.8 114 135-250 3-116 (118)
133 2e2e_A Formate-dependent nitri 99.5 4.4E-14 1.5E-18 111.4 11.2 123 119-243 22-152 (177)
134 1p5q_A FKBP52, FK506-binding p 99.5 2.2E-14 7.5E-19 125.6 9.7 148 84-235 126-294 (336)
135 2ifu_A Gamma-SNAP; membrane fu 99.5 8.7E-14 3E-18 120.0 12.3 181 42-227 38-253 (307)
136 1hxi_A PEX5, peroxisome target 99.5 1.5E-13 5.1E-18 102.1 11.7 87 186-272 31-119 (121)
137 1hxi_A PEX5, peroxisome target 99.5 1.9E-13 6.6E-18 101.5 12.2 103 137-241 18-120 (121)
138 3sz7_A HSC70 cochaperone (SGT) 99.5 5.6E-13 1.9E-17 103.9 15.3 99 173-273 14-114 (164)
139 2qfc_A PLCR protein; TPR, HTH, 99.5 8.4E-12 2.9E-16 106.6 23.8 163 103-267 71-266 (293)
140 3q7a_A Farnesyltransferase alp 99.5 2.7E-12 9.1E-17 111.9 20.6 182 71-256 54-258 (349)
141 3k9i_A BH0479 protein; putativ 99.5 1.9E-14 6.4E-19 106.0 5.6 99 186-284 4-107 (117)
142 2xev_A YBGF; tetratricopeptide 99.5 1.5E-12 5.1E-17 96.7 16.1 111 137-249 3-119 (129)
143 2dba_A Smooth muscle cell asso 99.5 1.5E-12 5.1E-17 98.7 16.3 117 133-251 25-144 (148)
144 1dce_A Protein (RAB geranylger 99.5 1.3E-12 4.6E-17 121.9 19.2 169 85-256 43-242 (567)
145 2c2l_A CHIP, carboxy terminus 99.5 1.4E-13 4.8E-18 117.3 11.6 188 40-236 4-200 (281)
146 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.9E-14 1.7E-18 128.5 8.3 135 120-256 247-401 (457)
147 3q49_B STIP1 homology and U bo 99.5 1.3E-12 4.6E-17 98.0 15.0 102 135-238 8-109 (137)
148 1a17_A Serine/threonine protei 99.5 3E-12 1E-16 98.9 16.6 128 106-235 12-146 (166)
149 1b89_A Protein (clathrin heavy 99.5 1.5E-12 5.2E-17 116.2 16.8 230 6-256 60-298 (449)
150 3q49_B STIP1 homology and U bo 99.5 1.5E-12 5.1E-17 97.7 14.3 110 166-277 5-121 (137)
151 3rkv_A Putative peptidylprolyl 99.5 1.5E-12 5.1E-17 101.2 14.6 111 137-249 12-141 (162)
152 1zu2_A Mitochondrial import re 99.5 2.9E-13 9.8E-18 104.3 9.5 92 186-277 16-130 (158)
153 2vyi_A SGTA protein; chaperone 99.5 2.1E-12 7.3E-17 95.2 13.9 118 103-222 8-130 (131)
154 2xev_A YBGF; tetratricopeptide 99.4 3.9E-12 1.3E-16 94.4 15.2 100 185-284 15-122 (129)
155 2lni_A Stress-induced-phosphop 99.4 2.9E-12 9.9E-17 95.1 14.0 117 103-221 12-133 (133)
156 4e6h_A MRNA 3'-END-processing 99.4 5.9E-12 2E-16 119.5 19.3 216 59-278 328-581 (679)
157 2if4_A ATFKBP42; FKBP-like, al 99.4 2.6E-13 8.9E-18 118.8 9.3 134 138-273 181-334 (338)
158 4gcn_A Protein STI-1; structur 99.4 3.6E-12 1.2E-16 95.3 14.3 85 186-270 22-115 (127)
159 4gcn_A Protein STI-1; structur 99.4 1.6E-12 5.5E-17 97.2 11.8 107 137-246 9-122 (127)
160 2fbn_A 70 kDa peptidylprolyl i 99.4 2.9E-13 9.9E-18 108.9 8.2 95 137-233 89-184 (198)
161 1elw_A TPR1-domain of HOP; HOP 99.4 1.3E-11 4.3E-16 89.4 15.8 94 185-278 17-112 (118)
162 2kck_A TPR repeat; tetratricop 99.4 2.2E-12 7.4E-17 92.7 11.4 87 186-272 20-111 (112)
163 3rkv_A Putative peptidylprolyl 99.4 3.2E-12 1.1E-16 99.3 13.2 94 184-277 23-137 (162)
164 1elr_A TPR2A-domain of HOP; HO 99.4 4.9E-12 1.7E-16 93.3 13.6 115 135-252 3-124 (131)
165 3u3w_A Transcriptional activat 99.4 1.9E-11 6.7E-16 104.3 18.8 192 67-267 42-266 (293)
166 2qfc_A PLCR protein; TPR, HTH, 99.4 1.4E-11 4.9E-16 105.1 17.8 161 71-235 75-266 (293)
167 2dba_A Smooth muscle cell asso 99.4 1.1E-11 3.9E-16 93.7 15.3 111 166-278 24-139 (148)
168 2kck_A TPR repeat; tetratricop 99.4 3.7E-12 1.3E-16 91.4 11.8 106 133-240 3-111 (112)
169 3q7a_A Farnesyltransferase alp 99.4 3.1E-11 1E-15 105.2 19.5 230 40-271 54-336 (349)
170 2hr2_A Hypothetical protein; a 99.4 1.5E-12 5.2E-17 100.5 10.0 90 184-273 23-137 (159)
171 2hr2_A Hypothetical protein; a 99.4 2.6E-12 9E-17 99.1 11.2 108 138-247 13-143 (159)
172 3k9i_A BH0479 protein; putativ 99.4 1.4E-12 4.9E-17 95.8 9.2 100 148-249 2-104 (117)
173 1na0_A Designed protein CTPR3; 99.4 2.5E-11 8.6E-16 88.6 15.9 116 103-220 4-125 (125)
174 3u3w_A Transcriptional activat 99.4 1.6E-11 5.5E-16 104.9 16.6 158 74-235 78-266 (293)
175 1wao_1 Serine/threonine protei 99.4 4.1E-13 1.4E-17 123.0 6.3 121 140-262 10-134 (477)
176 1zu2_A Mitochondrial import re 99.4 6.1E-12 2.1E-16 96.9 10.8 101 148-248 14-133 (158)
177 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.2E-12 4.2E-17 119.2 8.0 146 85-234 248-414 (457)
178 2if4_A ATFKBP42; FKBP-like, al 99.3 4.5E-12 1.6E-16 110.9 10.5 156 70-241 178-334 (338)
179 3gw4_A Uncharacterized protein 99.3 2.5E-11 8.4E-16 97.0 13.9 150 83-236 4-177 (203)
180 3gw4_A Uncharacterized protein 99.3 1.6E-11 5.3E-16 98.2 12.7 150 117-268 2-177 (203)
181 1ihg_A Cyclophilin 40; ppiase 99.3 2E-11 6.9E-16 108.1 14.0 117 138-256 225-357 (370)
182 1dce_A Protein (RAB geranylger 99.3 7.7E-11 2.6E-15 110.0 18.5 156 121-276 43-230 (567)
183 2kat_A Uncharacterized protein 99.3 1.8E-11 6.3E-16 89.3 10.3 83 190-272 3-87 (115)
184 1elr_A TPR2A-domain of HOP; HO 99.3 8.3E-11 2.8E-15 86.6 13.1 91 184-275 16-115 (131)
185 1wao_1 Serine/threonine protei 99.3 1E-12 3.4E-17 120.4 3.1 132 106-239 5-154 (477)
186 4b4t_Q 26S proteasome regulato 99.2 4E-10 1.4E-14 100.8 17.2 193 9-201 7-245 (434)
187 4e6h_A MRNA 3'-END-processing 99.2 1.6E-09 5.3E-14 102.9 21.8 212 72-285 303-551 (679)
188 1ihg_A Cyclophilin 40; ppiase 99.2 2.9E-10 9.9E-15 100.7 14.4 107 184-290 235-363 (370)
189 4b4t_Q 26S proteasome regulato 99.2 2.9E-10 1E-14 101.7 14.4 172 43-235 7-204 (434)
190 3ma5_A Tetratricopeptide repea 99.2 9.4E-11 3.2E-15 83.6 8.1 73 202-274 3-77 (100)
191 1na3_A Designed protein CTPR2; 99.2 5.6E-10 1.9E-14 77.1 11.9 70 185-254 22-91 (91)
192 3ro3_A PINS homolog, G-protein 99.2 4.3E-10 1.5E-14 85.6 12.1 131 106-238 8-161 (164)
193 3ro3_A PINS homolog, G-protein 99.1 5.4E-10 1.8E-14 85.1 11.8 132 137-270 10-161 (164)
194 2kat_A Uncharacterized protein 99.1 6E-10 2.1E-14 81.1 10.8 96 153-250 2-99 (115)
195 2l6j_A TPR repeat-containing p 99.1 1.5E-10 5E-15 83.2 7.0 78 184-261 16-101 (111)
196 1pc2_A Mitochondria fission pr 99.1 1E-09 3.6E-14 83.5 10.4 95 187-281 13-114 (152)
197 2kc7_A BFR218_protein; tetratr 99.0 3.3E-10 1.1E-14 80.0 6.6 81 185-273 13-96 (99)
198 2l6j_A TPR repeat-containing p 99.0 4.9E-10 1.7E-14 80.4 5.1 95 135-231 3-103 (111)
199 3bee_A Putative YFRE protein; 98.9 8.1E-09 2.8E-13 72.5 10.4 76 202-277 2-82 (93)
200 3ma5_A Tetratricopeptide repea 98.9 9.4E-09 3.2E-13 73.0 10.1 86 165-252 2-89 (100)
201 2kc7_A BFR218_protein; tetratr 98.9 1.2E-08 4.2E-13 71.7 10.7 78 210-291 4-84 (99)
202 1na3_A Designed protein CTPR2; 98.9 1.8E-08 6.2E-13 69.3 11.3 84 135-220 8-91 (91)
203 3u64_A Protein TP_0956; tetrat 98.9 2E-07 6.9E-12 78.3 18.3 175 91-271 52-273 (301)
204 3n71_A Histone lysine methyltr 98.8 6.8E-08 2.3E-12 88.4 14.0 125 143-267 316-464 (490)
205 3ly7_A Transcriptional activat 98.8 7E-07 2.4E-11 77.9 19.4 140 133-273 191-345 (372)
206 1klx_A Cysteine rich protein B 98.8 6.3E-08 2.2E-12 73.1 11.3 61 188-252 41-105 (138)
207 3qww_A SET and MYND domain-con 98.8 2.9E-08 1E-12 89.4 10.7 99 185-283 311-432 (433)
208 3n71_A Histone lysine methyltr 98.8 1.2E-07 4.2E-12 86.6 14.5 100 184-283 321-443 (490)
209 1klx_A Cysteine rich protein B 98.7 3.3E-07 1.1E-11 69.1 14.0 119 121-248 9-137 (138)
210 1pc2_A Mitochondria fission pr 98.7 1.9E-07 6.5E-12 71.0 11.7 98 152-249 14-114 (152)
211 4g26_A Pentatricopeptide repea 98.7 4.6E-06 1.6E-10 76.5 22.2 157 75-235 30-204 (501)
212 2uy1_A Cleavage stimulation fa 98.6 9.6E-07 3.3E-11 81.0 16.7 198 59-266 198-412 (493)
213 3bee_A Putative YFRE protein; 98.6 1.9E-07 6.6E-12 65.4 9.2 76 166-241 2-78 (93)
214 2uy1_A Cleavage stimulation fa 98.6 1.8E-05 6.2E-10 72.5 24.0 151 19-174 27-250 (493)
215 4g26_A Pentatricopeptide repea 98.6 6.4E-06 2.2E-10 75.6 20.3 160 43-206 29-211 (501)
216 3qwp_A SET and MYND domain-con 98.6 5.2E-07 1.8E-11 81.2 12.4 101 185-285 300-423 (429)
217 1nzn_A CGI-135 protein, fissio 98.6 5.3E-07 1.8E-11 66.2 10.0 94 188-281 17-117 (126)
218 3ly7_A Transcriptional activat 98.6 2.2E-06 7.5E-11 74.8 15.4 132 86-241 214-345 (372)
219 2v5f_A Prolyl 4-hydroxylase su 98.4 4.7E-06 1.6E-10 59.4 11.5 46 203-248 43-88 (104)
220 3qww_A SET and MYND domain-con 98.4 2.2E-06 7.4E-11 77.2 11.5 96 148-243 310-424 (433)
221 2v5f_A Prolyl 4-hydroxylase su 98.4 5.7E-06 2E-10 58.9 11.0 72 205-276 4-84 (104)
222 3qwp_A SET and MYND domain-con 98.3 1.7E-05 5.8E-10 71.3 14.2 107 144-250 295-423 (429)
223 1nzn_A CGI-135 protein, fissio 98.2 2.2E-05 7.5E-10 57.5 10.9 97 151-247 16-115 (126)
224 3u64_A Protein TP_0956; tetrat 98.1 4.6E-05 1.6E-09 64.0 12.2 107 133-239 149-273 (301)
225 4h7y_A Dual specificity protei 98.0 0.00027 9.3E-09 53.0 13.9 123 133-256 10-143 (161)
226 1y8m_A FIS1; mitochondria, unk 98.0 0.00024 8E-09 52.9 12.7 78 203-280 36-119 (144)
227 3o48_A Mitochondria fission 1 97.9 0.00017 5.9E-09 53.0 10.7 75 205-279 39-119 (134)
228 3o48_A Mitochondria fission 1 97.7 0.00067 2.3E-08 49.8 10.9 79 170-248 40-120 (134)
229 1y8m_A FIS1; mitochondria, unk 97.7 0.0023 8E-08 47.6 13.9 80 168-247 37-118 (144)
230 3txn_A 26S proteasome regulato 97.1 0.1 3.5E-06 45.9 20.4 184 41-225 20-239 (394)
231 3mkq_A Coatomer beta'-subunit; 97.1 0.041 1.4E-06 52.7 19.0 103 46-163 605-708 (814)
232 4h7y_A Dual specificity protei 97.0 0.0089 3E-07 44.9 10.7 110 166-278 9-134 (161)
233 3kae_A CDC27, possible protein 96.9 0.024 8.1E-07 43.5 12.3 130 85-242 16-150 (242)
234 3ffl_A Anaphase-promoting comp 96.9 0.0027 9.4E-08 48.5 7.3 123 10-146 24-165 (167)
235 3ffl_A Anaphase-promoting comp 96.8 0.0047 1.6E-07 47.2 7.6 79 185-263 33-147 (167)
236 3mkq_A Coatomer beta'-subunit; 96.7 0.043 1.5E-06 52.5 15.9 123 15-160 608-731 (814)
237 3txn_A 26S proteasome regulato 96.1 0.63 2.1E-05 40.9 19.5 218 71-291 19-281 (394)
238 3mkq_B Coatomer subunit alpha; 96.1 0.21 7.1E-06 38.7 13.1 44 85-135 19-62 (177)
239 4gns_B Protein CSD3, chitin bi 96.0 0.12 4E-06 49.4 13.7 49 208-256 339-387 (754)
240 2wpv_A GET4, UPF0363 protein Y 95.8 0.31 1.1E-05 41.3 14.3 61 204-264 132-214 (312)
241 1zbp_A Hypothetical protein VP 95.2 0.6 2E-05 38.6 13.4 117 117-239 7-133 (273)
242 4ady_A RPN2, 26S proteasome re 95.2 0.99 3.4E-05 44.1 17.0 240 16-265 384-656 (963)
243 1zbp_A Hypothetical protein VP 95.0 0.22 7.6E-06 41.1 10.3 50 81-132 7-56 (273)
244 4gns_B Protein CSD3, chitin bi 94.8 0.54 1.8E-05 44.9 13.9 50 182-231 347-396 (754)
245 3spa_A Mtrpol, DNA-directed RN 94.8 0.57 2E-05 46.2 14.0 50 186-235 179-230 (1134)
246 4b4t_P 26S proteasome regulato 94.6 2.3 8E-05 37.9 19.7 94 140-235 141-247 (445)
247 2ff4_A Probable regulatory pro 94.6 0.88 3E-05 39.8 14.0 87 147-233 126-232 (388)
248 3spa_A Mtrpol, DNA-directed RN 94.5 0.32 1.1E-05 47.9 11.6 90 42-132 129-226 (1134)
249 1qsa_A Protein (soluble lytic 94.0 4 0.00014 38.1 23.4 49 186-234 299-347 (618)
250 4fhn_B Nucleoporin NUP120; pro 93.5 1.4 4.8E-05 44.3 14.7 205 15-235 821-1050(1139)
251 3mkq_B Coatomer subunit alpha; 93.5 2 6.8E-05 33.1 15.2 110 105-232 6-115 (177)
252 4fhn_B Nucleoporin NUP120; pro 93.5 2.8 9.6E-05 42.1 16.8 119 103-222 838-987 (1139)
253 4b4t_R RPN7, 26S proteasome re 93.3 0.61 2.1E-05 41.5 10.5 96 106-203 130-239 (429)
254 2ff4_A Probable regulatory pro 92.6 1.1 3.7E-05 39.2 11.0 59 208-266 173-233 (388)
255 3lpz_A GET4 (YOR164C homolog); 92.5 4.5 0.00015 34.5 23.2 167 67-253 90-295 (336)
256 1ya0_A SMG-7 transcript varian 92.4 1.1 3.8E-05 40.7 11.0 67 186-252 166-232 (497)
257 4b4t_S RPN3, 26S proteasome re 92.2 0.64 2.2E-05 42.2 9.0 53 185-239 244-303 (523)
258 4b4t_P 26S proteasome regulato 92.0 0.78 2.7E-05 41.0 9.5 190 10-201 21-247 (445)
259 1ya0_A SMG-7 transcript varian 90.6 1.4 4.7E-05 40.0 9.6 60 208-267 154-215 (497)
260 4b4t_R RPN7, 26S proteasome re 90.3 1.2 4E-05 39.6 8.8 96 71-166 131-238 (429)
261 3lvg_A Clathrin heavy chain 1; 89.5 0.0024 8.3E-08 57.4 -9.1 50 11-66 58-109 (624)
262 2uwj_G Type III export protein 89.3 1.3 4.6E-05 30.5 6.3 76 22-100 22-97 (115)
263 2p58_C Putative type III secre 88.9 1.4 4.8E-05 30.5 6.2 76 22-100 23-98 (116)
264 3kae_A CDC27, possible protein 87.9 7.7 0.00026 29.8 15.3 83 12-100 8-91 (242)
265 4ady_A RPN2, 26S proteasome re 87.6 23 0.00077 34.8 17.6 178 50-238 384-591 (963)
266 2ynq_A ESSB; membrane protein, 87.5 1 3.6E-05 33.8 5.3 21 117-137 83-103 (161)
267 3bu8_A Telomeric repeat-bindin 84.7 13 0.00044 29.4 10.4 60 188-247 88-155 (235)
268 1qsa_A Protein (soluble lytic 84.6 26 0.00088 32.6 24.7 191 48-256 222-429 (618)
269 1wy6_A Hypothetical protein ST 84.0 11 0.00037 27.9 10.2 52 185-236 104-155 (172)
270 3esl_A Checkpoint serine/threo 83.1 15 0.00051 28.8 10.6 87 157-243 58-152 (202)
271 4b4t_S RPN3, 26S proteasome re 82.4 25 0.00085 31.9 12.8 125 31-159 222-364 (523)
272 3t5v_B Nuclear mRNA export pro 81.9 4.4 0.00015 36.2 7.8 111 181-291 185-321 (455)
273 2wvi_A Mitotic checkpoint seri 81.4 12 0.0004 28.4 8.9 85 156-243 43-133 (164)
274 3t5x_A PCI domain-containing p 78.9 10 0.00034 29.8 8.2 85 206-291 14-105 (203)
275 4aez_C MAD3, mitotic spindle c 77.1 18 0.00063 28.8 9.2 122 119-243 54-187 (223)
276 4a1g_A Mitotic checkpoint seri 75.7 22 0.00076 26.4 10.3 68 173-243 69-138 (152)
277 3bqo_A Telomeric repeat-bindin 75.7 3.5 0.00012 32.2 4.4 54 210-277 121-174 (211)
278 3lpz_A GET4 (YOR164C homolog); 75.6 37 0.0013 28.9 23.7 90 124-233 119-214 (336)
279 3esl_A Checkpoint serine/threo 75.5 13 0.00046 29.0 7.8 61 71-132 80-140 (202)
280 3lvg_A Clathrin heavy chain 1; 71.6 0.015 5.1E-07 52.4 -10.9 215 19-255 38-278 (624)
281 3ax2_A Mitochondrial import re 68.1 13 0.00044 23.9 5.2 34 210-243 21-54 (73)
282 4a1g_A Mitotic checkpoint seri 67.8 27 0.00093 25.9 7.7 28 138-165 103-130 (152)
283 2wpv_A GET4, UPF0363 protein Y 67.5 55 0.0019 27.5 24.7 88 44-133 57-160 (312)
284 4gq2_M Nucleoporin NUP120; bet 66.7 32 0.0011 33.8 10.2 94 195-289 829-948 (950)
285 2wvi_A Mitotic checkpoint seri 63.2 28 0.00096 26.2 7.1 29 138-166 98-126 (164)
286 4aez_C MAD3, mitotic spindle c 60.8 26 0.0009 27.9 6.8 61 103-166 116-180 (223)
287 2uwj_G Type III export protein 60.3 39 0.0013 23.3 10.7 77 85-164 20-96 (115)
288 4gq2_M Nucleoporin NUP120; bet 53.9 1.7E+02 0.0058 28.7 15.6 116 113-242 816-934 (950)
289 2p58_C Putative type III secre 52.8 54 0.0018 22.6 11.0 77 85-164 21-97 (116)
290 2w2u_A Hypothetical P60 katani 47.8 26 0.00089 23.0 4.1 21 214-234 27-47 (83)
291 2ynq_A ESSB; membrane protein, 47.6 86 0.0029 23.4 9.4 83 111-198 12-99 (161)
292 1om2_A Protein (mitochondrial 47.4 20 0.00068 24.3 3.5 33 210-242 24-56 (95)
293 3ph0_C ASCG; type III secretio 47.2 45 0.0015 20.1 6.4 46 180-226 14-60 (61)
294 3ax2_A Mitochondrial import re 45.2 47 0.0016 21.2 4.9 31 140-170 21-51 (73)
295 2v6y_A AAA family ATPase, P60 44.6 31 0.0011 22.6 4.1 21 214-234 19-39 (83)
296 1g1e_B SIN3A; four-helix bundl 44.3 68 0.0023 21.3 6.8 57 188-244 10-80 (89)
297 2crb_A Nuclear receptor bindin 43.9 25 0.00085 23.7 3.5 26 107-132 15-40 (97)
298 1oyz_A Hypothetical protein YI 43.8 1.2E+02 0.0041 24.1 17.2 223 41-278 38-274 (280)
299 3dza_A Uncharacterized putativ 40.5 87 0.003 24.1 6.6 119 40-164 35-178 (191)
300 4a5x_A MITD1, MIT domain-conta 38.9 54 0.0018 21.6 4.6 24 211-234 21-44 (86)
301 2d2s_A Exocyst complex compone 38.3 1.5E+02 0.0051 23.6 8.1 88 144-233 26-118 (235)
302 2crb_A Nuclear receptor bindin 37.4 63 0.0022 21.7 4.6 26 208-233 17-42 (97)
303 2v6x_A Vacuolar protein sortin 35.8 63 0.0022 21.0 4.6 21 214-234 21-41 (85)
304 1wfd_A Hypothetical protein 15 35.6 50 0.0017 22.1 4.1 20 215-234 24-43 (93)
305 2rpa_A Katanin P60 ATPase-cont 32.7 36 0.0012 22.1 2.8 25 42-66 14-38 (78)
306 2cpt_A SKD1 protein, vacuolar 30.3 73 0.0025 22.4 4.4 19 216-234 28-46 (117)
307 2cfu_A SDSA1; SDS-hydrolase, l 29.4 1.1E+02 0.0037 28.6 6.7 49 207-255 450-498 (658)
308 3t5x_A PCI domain-containing p 28.8 1.4E+02 0.0048 23.1 6.3 26 141-166 19-44 (203)
309 1wy6_A Hypothetical protein ST 28.7 1.8E+02 0.006 21.5 14.4 122 143-268 14-155 (172)
310 1om2_A Protein (mitochondrial 28.2 61 0.0021 21.9 3.5 30 140-169 24-53 (95)
311 4gq4_A Menin; tumor suppressor 25.0 1.7E+02 0.0057 25.8 6.4 86 149-246 258-349 (489)
312 2ca5_A MXIH; transport protein 24.4 61 0.0021 21.3 2.8 28 221-248 25-52 (85)
313 3bu8_A Telomeric repeat-bindin 22.9 2.8E+02 0.0097 21.9 8.3 21 185-205 127-147 (235)
314 2czy_A Paired amphipathic heli 22.4 1.6E+02 0.0054 18.8 7.3 52 222-273 4-58 (77)
315 3re2_A Predicted protein; meni 22.2 3.8E+02 0.013 23.1 10.2 69 149-234 251-324 (472)
316 3s6n_M SurviVal motor neuron p 21.2 57 0.0019 17.5 1.7 11 281-291 15-25 (37)
317 2qx5_A Nucleoporin NIC96; mRNA 20.8 5.2E+02 0.018 24.1 10.4 104 108-239 444-570 (661)
318 2cr7_A Paired amphipathic heli 20.5 1.3E+02 0.0045 19.4 3.9 50 223-272 11-63 (80)
No 1
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=100.00 E-value=1.2e-44 Score=312.52 Aligned_cols=285 Identities=43% Similarity=0.712 Sum_probs=270.0
Q ss_pred CchhhhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCC
Q 022777 8 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 8 ~~~~~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~ 86 (292)
+++|.|+..|+.|+|+.||... ++...+|++..+++++++++|+.+|+++.|+..++...+|...++..++.++...++
T Consensus 1 d~l~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 5799999999999999999995 488899997778999999999999999999999987778888899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
.++|+..+++++..+.+|+++.+++.+|.++...|++++|+.+|++|.+++++..++.++..+|++++|++.++++++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999999999876335999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 167 EDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 167 p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
|++....++.+|+.+..+.|++++|+.+|+++++.+|+++.+++++|.++++.|++++|+..|++++.++|+++++++++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99988888889988888778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc---HHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhcC
Q 022777 247 VVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292 (292)
Q Consensus 247 ~~~~~~~g~~---a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
|.++...|++ +.++++++.+++|+||.+.++..+.+.||+++++|+
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 289 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998 578999999999999999999999999999999985
No 2
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=100.00 E-value=1.9e-36 Score=259.65 Aligned_cols=272 Identities=21% Similarity=0.313 Sum_probs=234.4
Q ss_pred ccCCCchhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcC
Q 022777 4 AAAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS 83 (292)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~ 83 (292)
.-||++||.|+..|+.|+|..||.. +.+.+|++..+..++++|+|+.+|++.... ..+|...++..++.++..
T Consensus 11 ~~~~~~lf~ikn~fy~G~yq~~i~e--~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~~~ 83 (310)
T 3mv2_B 11 SQDPMDYFNIKQNYYTGNFVQCLQE--IEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFLDT 83 (310)
T ss_dssp ----CCTHHHHHHHTTTCHHHHTHH--HHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhHHHHHHHH--HHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHhcc
Confidence 3589999999999999999999997 233334434468899999999999997532 245556688888988752
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcC-------CchhHHHHHHHHHHhCCChHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAG-------GTMELHALNVQIFLKMHRSDYAE 156 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~ 156 (292)
+ ++..+++++.. .+.+...++.+|.++...|++++|++++.+. .+.++....+++++.+|+++.|.
T Consensus 84 --~---a~~~l~~l~~~--~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 84 --K---NIEELENLLKD--KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp --T---CCHHHHHTTTT--SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --c---HHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 78899999886 4555677789999999999999999999983 68899999999999999999999
Q ss_pred HHHHHHHhhCC------CcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 157 RQLRAMQQIDE------DHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 157 ~~l~~~~~~~p------~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
+.++++.+.+| ++....++.+|+++..+.+++.+|+.+|+++.+.+|+ ++..+.+ +++++|++++|++.
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence 99999999999 6778899999999998888899999999999999997 4444444 89999999999999
Q ss_pred HHHHHhh----------CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHhhCCCChhHHhHHhhHHHHHHHHhhcC
Q 022777 229 LLDALNK----------DAKDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 292 (292)
Q Consensus 229 ~~~al~~----------~p~~~~~~~~l~~~~~~~g~~a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 292 (292)
++.+++. +|+|++++.|++.+....|+.+.++++++.+.+|+||++.++..+...||+++++|+
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYD 307 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhc
Confidence 9988876 599999999999999999988999999999999999999999999999999999995
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2e-30 Score=230.91 Aligned_cols=272 Identities=15% Similarity=0.072 Sum_probs=171.1
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.++..|++++|++.. +.++.+|+ ...++..++.++...|++++|+..++++ +|....++..++.++...|++++|
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 344456666666653 24445555 2455666666666666666666666554 444455556666666666666666
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..|++++.. .|+++.++..+|.++...|++++|+..|++ |.++.++..+|.++...|++++|+..+++++..
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665 566666666666666666666666666665 556666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
+|++.......+.++.. .|++++|+..|++++...|+++.+++.+|.++...|++++|+..|++++++.|+++.++.+
T Consensus 233 ~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYE--QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp CTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 66665444444433332 3457777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 246 LVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
++.++...|++ |.++++++++.+|+++.+.. +....+++++|+..|
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777766 67777777777777664322 344455555555543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.6e-30 Score=230.13 Aligned_cols=272 Identities=13% Similarity=0.027 Sum_probs=188.3
Q ss_pred hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.++..|++++|+...+ .++.+|. ...++..+|.++...|++++|+..++++ .|.+..++..++.++...|++++|
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHH
Confidence 3344566666666632 4455565 3566666677777777777777777665 455566666666666666777777
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..|++++.. +|++..++..+|.++...|++++|+..|++ |.++.++..++.++...|++++|+..++++++.
T Consensus 121 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 121 VQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777666 677777777777777777777777777765 566667777777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
+|++.......+.++. ..|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++++|++++++.+
T Consensus 199 ~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 276 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276 (388)
T ss_dssp CTTCHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 7776554444443333 34567777777777777777777777788888888888888888888888888888877777
Q ss_pred HHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 246 LVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
+|.++...|++ |.++++++++.+|+++.+.. +....+++++|+..|
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88777777776 77777787777777775433 355566777776654
No 5
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.8e-29 Score=214.79 Aligned_cols=261 Identities=12% Similarity=0.044 Sum_probs=235.5
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCC-C
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPD-N 86 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~-~ 86 (292)
.+..++..|++++|+... ++++.+|.+ ..++..++.++...|++++|+..++++ .|.+..++..++.++...| +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFH-ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 455778899999999994 477778874 677888999999999999999999987 6777889999999998888 8
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
+++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.+..++..++.++...|++++|+..+++
T Consensus 107 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999998 899999999999999999999999999988 67788899999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 162 MQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY---------PMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 162 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+++.+|++.......+.++.. .|++++|+..|++++... |..+.++..+|.++...|++++|+..|+++
T Consensus 185 al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 185 ALSIAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999998776666666554 467999999999999875 677889999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 233 LNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 233 l~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++.+|+++.++.++|.++...|++ |.++++++++++|+++.+...
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 999999999999999999999998 999999999999999875543
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5.9e-28 Score=210.83 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=182.9
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CC---chHHHHHHH----------
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AA---TPLQAVKLL---------- 77 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~---~~~~a~~~l---------- 77 (292)
.++..|++++|+... ++++.+|.+ ..+++.+|.++...|++++|+..++++ .| .+..++..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 445566677776663 355556653 466666677777777777777666665 34 344455444
Q ss_pred --HHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCC
Q 022777 78 --ALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMH 150 (292)
Q Consensus 78 --a~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~ 150 (292)
+.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..+|.++...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45555666777777777777666 677777777777777777777777777765 566777777777777777
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccccHHHHHHHHHHhHhhCCCCHH----HHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLAN------------AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL----ILNGKAV 214 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~------------a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~ 214 (292)
++++|+..++++++..|++....... +.+ ....|++++|+..|++++...|+++. ++..+|.
T Consensus 203 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE--LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 77777777777777777765432211 222 22346688888888888888888774 4556888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 215 CCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++...|++++|+..|+++++.+|+++.+++++|.++...|++ |.+.++++.+.+|+++.+...
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888888888888888888888888888888888888888887 888888888888888876554
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=8.3e-28 Score=209.89 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=242.3
Q ss_pred hhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
...++..|+|++|+... +++..+|. ++.+++.+|.++...|++++|+..++++ .|.+..++..++.++...|+++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 34667899999999995 47777888 4789999999999999999999999987 6667889999999999999999
Q ss_pred HHHHHHHHHhcCCCCC---ccHHHHHHH------------HHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHh
Q 022777 89 STISSLKEWLSDPAIG---SNATLRLIA------------GIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLK 148 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~ 148 (292)
+|+..+++++.. .| +++.++..+ |.++...|++++|+..+++ |.++.++..++.++..
T Consensus 89 ~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 89 EAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999998 89 888888877 7999999999999999998 7889999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHH------------HHHHHH
Q 022777 149 MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILN------------GKAVCC 216 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------~la~~~ 216 (292)
.|++++|+..++++++.+|++.......+.++.. .|++++|+..|+++++..|+++.++. .+|.++
T Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ--LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777666666554 45699999999999999999988654 448899
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH----hHHhhHHHHHH
Q 022777 217 MHMGNFDEAEGLLLDALNKDAKDPET----LANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK----RASSGDESFER 286 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~----~~~~~~~~~~~ 286 (292)
...|++++|+..|++++...|+++.. +..+|.++...|++ |..+++++.+.+|+++.+. .+....+++++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999854 55689999999998 9999999999999998643 35677788888
Q ss_pred HHhhc
Q 022777 287 ALQSV 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
|+..|
T Consensus 325 A~~~~ 329 (359)
T 3ieg_A 325 AIQDY 329 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.2e-27 Score=214.59 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=123.0
Q ss_pred hcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHH
Q 022777 81 LSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYA 155 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A 155 (292)
+...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++ |.++.++..++.++...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33344444444444444444 455555555555556666666666555554 45666666667777777777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccccHHHHHHHHHHhHhhCCCCHH----HHHHHHHHHHhc
Q 022777 156 ERQLRAMQQIDEDHTLTQLAN------------AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL----ILNGKAVCCMHM 219 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~------------a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~ 219 (292)
+..+++++..+|++....... +.++. ..|++++|+..|++++...|+++. .+..+|.++...
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI--RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 777777777766665433222 22222 235577777777777777777643 666777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 220 GNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|++++|+..+++++..+|+++.+++++|.++...|++ |...++++++++|+++.+...
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 7777777777777777777777777777777777776 777777777777777765544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.9e-27 Score=212.99 Aligned_cols=275 Identities=14% Similarity=0.115 Sum_probs=241.5
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
.+..++..|++++|+..++ ++..+|.+ ..+++.+|.++...|++++|+..++++ .|.+..++..++.++...|++
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 3446678999999999954 66778884 789999999999999999999999987 677788999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccH---HHHHHH------------HHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNA---TLRLIA------------GIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFL 147 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~ 147 (292)
++|+..|++++.. .|+++ ..+..+ |.++...|++++|+..|++ |.++.++..++.+|.
T Consensus 111 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 111 DEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999998 89888 776655 6679999999999999987 788999999999999
Q ss_pred hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH------------HHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK------------AVC 215 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------a~~ 215 (292)
..|++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|+++..+..+ |.+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ--LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988766666655554 4679999999999999999999888776 999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHH
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPE----TLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFE 285 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~ 285 (292)
+...|++++|+..|++++.+.|+++. ++.++|.++...|++ |..+++++.+.+|+++.+.. +....++++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999965 678899999999998 99999999999999986443 466677888
Q ss_pred HHHhhc
Q 022777 286 RALQSV 291 (292)
Q Consensus 286 ~~~~~~ 291 (292)
+|+..|
T Consensus 347 ~A~~~~ 352 (450)
T 2y4t_A 347 EAIQDY 352 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1e-27 Score=210.98 Aligned_cols=252 Identities=12% Similarity=0.039 Sum_probs=210.8
Q ss_pred hhhhhccHHHHHh-h-ccCCCCCCch---HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCC
Q 022777 15 NNFYLGAYQAAIN-N-SDLTNLPPDD---AVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 15 ~~~~~g~~~~Ai~-~-~~~~~~~p~~---~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~ 86 (292)
.+...|+|++|++ . .+.....|.+ ....++.+|.++...|++++|+..++++ .|.+..++..++.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5567899999998 6 3455555543 3566888999999999999999999987 66778899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHH----------------HHHHH
Q 022777 87 KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHA----------------LNVQI 145 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~----------------~~a~~ 145 (292)
+++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.+..... .++.+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999998 899999999999999999999999999987 45444433 35555
Q ss_pred HHhCCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDED--HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
+ ..|++++|+..++++++.+|+ +.......+.++.. .|++++|+..|++++...|+++.+++.+|.++...|+++
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHH
Confidence 5 999999999999999999999 66555555555544 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCC
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~ 271 (292)
+|+..|++++.++|+++.+++++|.++...|++ |..++++++++.|++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998 999999999999988
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.6e-27 Score=203.25 Aligned_cols=256 Identities=14% Similarity=0.027 Sum_probs=223.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA 107 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~ 107 (292)
.....|. +....+.++..+...|++++|+..++++ +|.+..++..++.++...|++++|+..+++++.. .|+++
T Consensus 14 ~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 90 (330)
T 3hym_B 14 SVDGLQE-NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNP 90 (330)
T ss_dssp ------C-CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred HHhhchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCH
Confidence 3333444 3567788999999999999999999987 6666777777888888889999999999999998 89999
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 022777 108 TLRLIAGIIFMHEE-DYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNL 181 (292)
Q Consensus 108 ~~~~~la~~~~~~g-~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 181 (292)
.++..+|.++...| ++++|+..+++ |.++.++..+|.++...|++++|+..++++++..|++.......+.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999 99999999987 6788899999999999999999999999999999988766665565555
Q ss_pred HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHh
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD---------AKDPETLANLVVCSLH 252 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~ 252 (292)
. .|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++... |.++.++.++|.++..
T Consensus 171 ~--~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 171 L--TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp H--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred H--HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 4 4679999999999999999999999999999999999999999999999986 7788999999999999
Q ss_pred cCCc--HHHHHHHHHhhCCCChhHH----hHHhhHHHHHHHHhhc
Q 022777 253 QGKS--TSRYLNQLKLTHPDHMLVK----RASSGDESFERALQSV 291 (292)
Q Consensus 253 ~g~~--a~~~~~~~~~~~P~~~~~~----~~~~~~~~~~~~~~~~ 291 (292)
.|++ |.++++++.+.+|+++.+. .+....+++++|+..|
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9998 9999999999999998644 3567788898888765
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=8.3e-27 Score=205.69 Aligned_cols=233 Identities=11% Similarity=0.006 Sum_probs=202.4
Q ss_pred CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHH
Q 022777 35 PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRL 111 (292)
Q Consensus 35 ~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~ 111 (292)
+|......++.+|.++...|++++|+..++++ .|.+..++..++.++...|++++|+..|++++.. .|+++.++.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 137 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALM 137 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHH
Confidence 44334566889999999999999999999987 6778889999999999999999999999999998 899999999
Q ss_pred HHHHHHHhcCCHHHHHHHhhc-----CCchhHH----------HHHHHHHHhCCChHHHHHHHHHHHhhCCC--cHHHHH
Q 022777 112 IAGIIFMHEEDYNEALKHTNA-----GGTMELH----------ALNVQIFLKMHRSDYAERQLRAMQQIDED--HTLTQL 174 (292)
Q Consensus 112 ~la~~~~~~g~~~~A~~~~~~-----~~~~~~~----------~~~a~~~~~~~~~~~A~~~l~~~~~~~p~--~~~~~l 174 (292)
.+|.++...|++++|+..+++ |.++..+ ..++.++...|++++|+..++++++.+|+ +.....
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999987 3333333 34588999999999999999999999998 665555
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 175 ANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 175 ~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
..+.++.. .|++++|+..|+++++..|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|
T Consensus 218 ~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHL--SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 55555544 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc--HHHHHHHHHhhCCCC
Q 022777 255 KS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 255 ~~--a~~~~~~~~~~~P~~ 271 (292)
++ |..++++++++.|++
T Consensus 296 ~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 98 999999999998884
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.7e-26 Score=216.26 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH 119 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~ 119 (292)
+..++.++...|++++|+..+++. .|.+..++..++.++...|++++|+..|++++.. .|+++..+..+|.++..
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444332 2334445555555555555666666666655554 55555566666666666
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLI 194 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~ 194 (292)
.|++++|+..|++ |++..++..++.+|...|++++|+..++++++..|++.......+.++.. .|++++|+..
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~ 497 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN--KSDMQTAINH 497 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCHHHHHHH
Confidence 6666666666554 44555555566666666666666666666666655554444333333332 3446666666
Q ss_pred HHHhHhh------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHH
Q 022777 195 FQDFSEK------YPMT-GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 195 ~~~~~~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 265 (292)
|+++++. .|++ +.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++ |.+++++++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6665554 3433 455666666666666666666666666666666666666666666666665 666666666
Q ss_pred hhCCCChhHHh
Q 022777 266 LTHPDHMLVKR 276 (292)
Q Consensus 266 ~~~P~~~~~~~ 276 (292)
+++|+++.+..
T Consensus 578 ~~~p~~~~~~~ 588 (597)
T 2xpi_A 578 AISPNEIMASD 588 (597)
T ss_dssp HHCTTCHHHHH
T ss_pred hcCCCChHHHH
Confidence 66666655443
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=5.7e-26 Score=212.61 Aligned_cols=273 Identities=15% Similarity=0.040 Sum_probs=239.9
Q ss_pred hhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChh
Q 022777 13 LRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKE 88 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~ 88 (292)
+..+...|++++|+... ++.+. |. +...+..++.++...|++++|+..+++. .|.+..++..++.++...|+.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EK-SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-Cc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 44566789999999994 46665 54 4688899999999999999999999987 5666778888898888899999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 89 STISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 89 ~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
+|+..+++++.. .|+++..+..+|.+|...|++++|+..|++ |.++.++..++.+|...|++++|+..+++++
T Consensus 357 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987 899999999999999999999999999987 6788899999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CC
Q 022777 164 QIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK------DA 237 (292)
Q Consensus 164 ~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 237 (292)
+..|++.......+.++.. .|++++|+..|+++++..|+++.+++.+|.++.+.|++++|+..|+++++. +|
T Consensus 435 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 435 RLFQGTHLPYLFLGMQHMQ--LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HTTTTCSHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhCccchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 9999887666655555544 467999999999999999999999999999999999999999999999998 66
Q ss_pred CC-HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhhc
Q 022777 238 KD-PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQSV 291 (292)
Q Consensus 238 ~~-~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~~ 291 (292)
++ ..++.+++.++...|++ |.++++++.+.+|+++.+.. +....+++++|+..|
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 65 78999999999999998 99999999999999986543 466677788877654
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.2e-26 Score=212.45 Aligned_cols=271 Identities=14% Similarity=0.065 Sum_probs=208.3
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.++..|+|++|+... +++..+|. ++.+++.+|.++..+|++++|+..++++ +|.+..++..++.++...|++++|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 445566777777663 35555666 3566666677777777777777666665 455566666666665555555554
Q ss_pred H-------------------------------------------------------------------------------
Q 022777 91 I------------------------------------------------------------------------------- 91 (292)
Q Consensus 91 ~------------------------------------------------------------------------------- 91 (292)
+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 4
Q ss_pred ------------------------------HHHHHHhcCCCCCccHH-------HHHHHHHHHHhcCCHHHHHHHhhc--
Q 022777 92 ------------------------------SSLKEWLSDPAIGSNAT-------LRLIAGIIFMHEEDYNEALKHTNA-- 132 (292)
Q Consensus 92 ------------------------------~~~~~~l~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~-- 132 (292)
..+++++.. .|+++. ++..+|.++...|++++|+..+++
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555555 676644 577888899999999999999987
Q ss_pred ---CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHH
Q 022777 133 ---GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLIL 209 (292)
Q Consensus 133 ---~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 209 (292)
|. +.++..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|+++.++
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI--LQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45 88899999999999999999999999999999987766666665554 4569999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH----------hH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK----------RA 277 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~----------~~ 277 (292)
..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++ |.++++++.+..|+++.+. .+
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999888776431 23
Q ss_pred HhhH----------HHHHHHHhhc
Q 022777 278 SSGD----------ESFERALQSV 291 (292)
Q Consensus 278 ~~~~----------~~~~~~~~~~ 291 (292)
.... +++++|+..|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHH
Confidence 4444 8888887654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=2.4e-26 Score=202.25 Aligned_cols=249 Identities=16% Similarity=0.090 Sum_probs=220.1
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
....++..|++++|+... ++++.+|. ...+++.+|.++...|++++|+..++++ .|.+..++..++.++...|++
T Consensus 70 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 70 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 344667799999999994 47777888 4789999999999999999999999987 677788999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHH----------------HHHHHHHhcCCHHHHHHHhhc-----CC--chhHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRL----------------IAGIIFMHEEDYNEALKHTNA-----GG--TMELHALNVQ 144 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~-----~~--~~~~~~~~a~ 144 (292)
++|+..+++++.. .|++...+. .++.++ ..|++++|+..+++ |. .+.++..+|.
T Consensus 149 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 149 RQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 9999999999998 888776664 466666 99999999999987 56 6788999999
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 224 (292)
++...|++++|+..+++++..+|++.......+.++.. .|++++|+..|++++...|+++.++..+|.++...|++++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999987666666655554 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC-----------HHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 225 AEGLLLDALNKDAKD-----------PETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 225 A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
|+..|++++.+.|++ +.++.+++.++...|++ |..++++.++
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 999999999999998 89999999999999998 7777665543
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.8e-27 Score=204.31 Aligned_cols=248 Identities=16% Similarity=0.105 Sum_probs=124.2
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.++..|++++|+... ++.+..|. ...++..++.++...|++++|+..++++ .|.+..++..++.++...|++++|
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 334455555555552 23344444 2445555555555555555555555544 344444555555555555555555
Q ss_pred HHHHHHHhcCCCCCccHHHHHHH--------------HH-HHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCC
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIA--------------GI-IFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMH 150 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~ 150 (292)
+..+++++.. .|++...+..+ +. ++...|++++|+..+++ |.++.++..+|.++...|
T Consensus 109 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 109 LASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 5555555554 45544444444 33 44555555555555554 344455555555555555
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLL 230 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (292)
++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|+++.++..+|.++...|++++|+..|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLAN--GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55555555555555555554333333333332 2345555555555555555555555555555555555555555555
Q ss_pred HHHhhCCC------------CHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 231 DALNKDAK------------DPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 231 ~al~~~p~------------~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
+++...|+ ++.++.+++.++...|++ |..+++++++.
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 55555555 455555555555555554 44444444333
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=7.6e-26 Score=195.33 Aligned_cols=257 Identities=12% Similarity=0.019 Sum_probs=221.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA 107 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~ 107 (292)
+...+|......++.+|..+...|++++|+..++++ .|.+..++..++.++...|++++|+..+++++.. .|+++
T Consensus 12 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 89 (327)
T 3cv0_A 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDI 89 (327)
T ss_dssp CCSSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred chhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCH
Confidence 334456445567788999999999999999999987 6777888999999999899999999999999998 89999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHhhCC
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALN--------------VQ-IFLKMHRSDYAERQLRAMQQIDE 167 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~--------------a~-~~~~~~~~~~A~~~l~~~~~~~p 167 (292)
.++..+|.++...|++++|+..+++ |.+...+..+ +. ++...|++++|+..++++++..|
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987 5555555555 55 68889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 168 DHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 168 ~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
++.......+.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|+++.++.++|
T Consensus 170 ~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNL--SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 987766666665554 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCc--HHHHHHHHHhhCCC------------ChhH----HhHHhhHHHHHHHHhhc
Q 022777 248 VCSLHQGKS--TSRYLNQLKLTHPD------------HMLV----KRASSGDESFERALQSV 291 (292)
Q Consensus 248 ~~~~~~g~~--a~~~~~~~~~~~P~------------~~~~----~~~~~~~~~~~~~~~~~ 291 (292)
.++...|++ |.++++++.+..|+ ++.+ .......+++++|...|
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999998 99999999999999 4543 33466778888887755
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1e-26 Score=205.05 Aligned_cols=246 Identities=14% Similarity=0.055 Sum_probs=210.3
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCCh
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~ 87 (292)
....++..|++++|+...+ ++..+|. +..+++.+|.++..+|++++|+..++++ .|.+..++..++.++...|++
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH
Confidence 4446778999999999954 7777888 4789999999999999999999999987 677788999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHH----------HHHHHhcCCHHHHHHHhhc-----CC--chhHHHHHHHHHHhCC
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIA----------GIIFMHEEDYNEALKHTNA-----GG--TMELHALNVQIFLKMH 150 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~-----~~--~~~~~~~~a~~~~~~~ 150 (292)
++|+..+++++.. .|++...+..+ |.++...|++++|+..+++ |. ++.++..+|.++...|
T Consensus 150 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 150 QDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 9999999999988 78876666555 9999999999999999998 56 7889999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLL 230 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (292)
++++|+..++++++.+|++.......+.++.. .|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLAN--GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999998666666655554 4679999999999999999999999999999999999999999999
Q ss_pred HHHhhCCC------------CHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 231 DALNKDAK------------DPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 231 ~al~~~p~------------~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
+++++.|+ +..+|.+++.++...|+. +.+..+
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999988 367889999999999987 444443
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.4e-25 Score=184.74 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=151.9
Q ss_pred CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHH
Q 022777 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALN 142 (292)
Q Consensus 68 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~ 142 (292)
|++..++..++.++...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445566777777777777888888888888777 788888888888888888888888888776 6777778888
Q ss_pred HHHHHhC-----------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHH
Q 022777 143 VQIFLKM-----------HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNG 211 (292)
Q Consensus 143 a~~~~~~-----------~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 211 (292)
|.++... |++++|+..++++++.+|++.......+.++.. .|++++|+..|+++++.. +++.+++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--LGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8888887 999999999999999999998777666666554 466999999999999999 99999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHH
Q 022777 212 KAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLK 265 (292)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 265 (292)
+|.++...|++++|+..|+++++++|+++.++.++|.++...|++ |...++++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 888887764
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=205.60 Aligned_cols=254 Identities=13% Similarity=0.008 Sum_probs=228.6
Q ss_pred hccHHHHHhhc-cCCC-----C--C-------CchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHh
Q 022777 19 LGAYQAAINNS-DLTN-----L--P-------PDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALY 80 (292)
Q Consensus 19 ~g~~~~Ai~~~-~~~~-----~--~-------p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~ 80 (292)
.|++++|+... +++. . . |. ...+++.+|.++...|++++|+..++++ .|. ..++..++.+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEK-LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHH
Confidence 79999999984 3444 3 3 43 5778889999999999999999999987 555 8888999999
Q ss_pred hcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHH
Q 022777 81 LSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYA 155 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A 155 (292)
+...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..++.++...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999998 899999999999999999999999999987 67888999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH------HHHHHHHHHHh---cCCHHHHH
Q 022777 156 ERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL------ILNGKAVCCMH---MGNFDEAE 226 (292)
Q Consensus 156 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~---~g~~~~A~ 226 (292)
+..++++++..|++.......+.++.. .|++++|+..|++++...|+++. ++..+|.++.. .|++++|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 999999999999887666666665554 45799999999999999888855 99999999999 99999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 227 GLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 227 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
..|++++..+|+++.+++.+|.++...|++ |.++++++.+++|+++.+....
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999876543
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=205.67 Aligned_cols=166 Identities=13% Similarity=0.018 Sum_probs=109.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAW 178 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 178 (292)
|.++.+++.+|.++...|++++|+..+++ |. +.++..++.++...|++++|+..+++++..+|++.......+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 33455566666666666666666666665 34 5566666666666666666666666666666666544444444
Q ss_pred HHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--
Q 022777 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 179 ~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-- 256 (292)
++.. .|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++...|+++.++.++|.++...|++
T Consensus 313 ~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFI--LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHH--TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHH--hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence 4333 345777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHHHHhhCCCCh
Q 022777 257 TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~ 272 (292)
|..+++++.+..|+++
T Consensus 391 A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 391 ALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhhccc
Confidence 7777777777666664
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.2e-25 Score=182.50 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc-------HH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN-------AT 108 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~-------~~ 108 (292)
.++++..+|.++...|++++|+..++++ . ++..++..++.++...|++++|+..+++++.. .|++ +.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ--GREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccccchHHHHH
Confidence 4678889999999999999999999987 6 77888999999999999999999999999987 6765 79
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG 184 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~ 184 (292)
++..+|.++...|++++|+..+++ .+. +.++...|++++|+..+++++..+|++.......+.++..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-- 151 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH--
Confidence 999999999999999999999998 222 4567788899999999999999999887766666666554
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++ |..+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHhhC------CCChhHHhHHh
Q 022777 263 QLKLTH------PDHMLVKRASS 279 (292)
Q Consensus 263 ~~~~~~------P~~~~~~~~~~ 279 (292)
++.+++ |+++.+.....
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHH
Confidence 999999 88887766543
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=7e-25 Score=185.09 Aligned_cols=235 Identities=8% Similarity=-0.047 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc-HHHHHHHHHHH
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN-ATLRLIAGIIF 117 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~-~~~~~~la~~~ 117 (292)
.++.+|.++...|++++|+..++++ +|.+..++..++.++...|++++|+..+++++..+.+|.. ..++..+|.++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4556677777777777777777665 4444556666666666667777777777777664112222 34466777777
Q ss_pred HhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHhccccHHHH
Q 022777 118 MHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA-WLNLAVGGSKIQEA 191 (292)
Q Consensus 118 ~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a-~~~l~~~~~~~~~A 191 (292)
...|++++|+..+++ |.++.++..+|.++...|++++|+..++++++.+|++.......+ .++. .+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY---NKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH---HHHHHHH
Confidence 777777777777765 566666777777777777777777777777777776665544444 2222 1257777
Q ss_pred HHHHHHhHhhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----HHHHHHHHHHHHhcCCc--HH
Q 022777 192 YLIFQDFSEKYPMTGLILNGKAVCCMHMGN---FDEAEGLLLDALNKD---AKD-----PETLANLVVCSLHQGKS--TS 258 (292)
Q Consensus 192 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~--a~ 258 (292)
+..|+++++..|+++.++..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.++...|++ |.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777777777777777776 666777777777664 331 24566677777777766 77
Q ss_pred HHHHHHHhhCCCChhHHhHHh
Q 022777 259 RYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 259 ~~~~~~~~~~P~~~~~~~~~~ 279 (292)
++++++++++|+++.+.....
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHhcCccHHHHHHHhh
Confidence 777777777777776665543
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=3.9e-25 Score=197.22 Aligned_cols=237 Identities=9% Similarity=-0.032 Sum_probs=213.7
Q ss_pred CCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCC-hhHHHHHHHHHhcCCCCCccHH
Q 022777 33 NLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDN-KESTISSLKEWLSDPAIGSNAT 108 (292)
Q Consensus 33 ~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~p~~~~ 108 (292)
..+|. ..+++..++.++...|++++|+..++++ +|.+..++..++.++...|+ +++|+..|++++.. +|++..
T Consensus 91 ~~~p~-~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~ 167 (382)
T 2h6f_A 91 IYSDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQ 167 (382)
T ss_dssp CCCHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hCChh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHH
Confidence 45777 6899999999999999999999999987 78889999999999998896 99999999999998 999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 183 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 183 (292)
+++.+|.++...|++++|+..|++ |.+..++..+|.++..+|++++|+..++++++++|++...+...+.++...
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998 899999999999999999999999999999999999987776666665542
Q ss_pred ccccHHHH-----HHHHHHhHhhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--
Q 022777 184 GGSKIQEA-----YLIFQDFSEKYPMTGLILNGKAVCCMHMG--NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG-- 254 (292)
Q Consensus 184 ~~~~~~~A-----~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-- 254 (292)
.+.+++| +..|++++..+|+++.+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.++...|
T Consensus 248 -~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 248 -TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp -TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred -cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcc
Confidence 2334666 69999999999999999999999999988 799999999998 999999999999999998874
Q ss_pred ------C--c-HHHHHHHH-HhhCCCChhH
Q 022777 255 ------K--S-TSRYLNQL-KLTHPDHMLV 274 (292)
Q Consensus 255 ------~--~-a~~~~~~~-~~~~P~~~~~ 274 (292)
+ . |.++++++ .+++|.++..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 2 2 89999999 8999998753
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.6e-25 Score=202.11 Aligned_cols=253 Identities=13% Similarity=0.019 Sum_probs=221.1
Q ss_pred ccHHHHHhhc-cCCCCCCchH------HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhH
Q 022777 20 GAYQAAINNS-DLTNLPPDDA------VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 20 g~~~~Ai~~~-~~~~~~p~~~------~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
|++++|+... ++++.+|.+. ..+++.++.++...|++++|+..++++ .|. ..++..++.++...|++++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence 6899999984 4777788742 335777889999999999999999987 455 7888999999999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..++++++
T Consensus 295 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 899999999999999999999999999987 78889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH------HHHHHHHHHHhc----------CCHHHHHHH
Q 022777 165 IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL------ILNGKAVCCMHM----------GNFDEAEGL 228 (292)
Q Consensus 165 ~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~ 228 (292)
.+|++.......+.++.. .|++++|+..|++++...|+++. .+..+|.++... |++++|+..
T Consensus 373 ~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 999987666666666554 46799999999999988776553 355667899999 999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 229 LLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 229 ~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|+++++.+|+++.++.++|.++...|++ |.++++++.++.|+++.....
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999999998 999999999999999987654
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=4.5e-24 Score=175.74 Aligned_cols=187 Identities=16% Similarity=0.106 Sum_probs=160.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAW 178 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 178 (292)
|+++.+++.+|.++...|++++|+..|++ |++++++..+|.++...|++++|+..++++++.+|++......++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999997 8899999999999999999999999999999999999877666665
Q ss_pred HHHHh---------ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 179 LNLAV---------GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 179 ~~l~~---------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
++... ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 55543 00679999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHhcCCc--HHHHHHHHHhhCCCChhHH----hHHhhHHHHHHHHhhc
Q 022777 250 SLHQGKS--TSRYLNQLKLTHPDHMLVK----RASSGDESFERALQSV 291 (292)
Q Consensus 250 ~~~~g~~--a~~~~~~~~~~~P~~~~~~----~~~~~~~~~~~~~~~~ 291 (292)
+...|++ |...++++++.+|+++.+. .+....+++++|+..|
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999998 9999999999999999754 4577889999998766
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=9.3e-25 Score=184.33 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=200.4
Q ss_pred CCchhhh-hhhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCch----HHHHHHHH
Q 022777 7 PDHLFNL-RNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATP----LQAVKLLA 78 (292)
Q Consensus 7 ~~~~~~~-~~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~----~~a~~~la 78 (292)
++.++.. ..++..|++++|+... ++++.+|. +..+++.+|.++..+|++++|+..++++ .+++ ..++..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4455544 4667799999999994 47778888 4678999999999999999999999987 2222 44588999
Q ss_pred HhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChH
Q 022777 79 LYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSD 153 (292)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~ 153 (292)
.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..+|......++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 899999999999999999999999999998 688889999994444556999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhC---CCC-----HHHHHHHHHHHHhcCCHHH
Q 022777 154 YAERQLRAMQQIDEDHTLTQLANAWLNLAVGG-SKIQEAYLIFQDFSEKY---PMT-----GLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 154 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~-~~~~~A~~~~~~~~~~~---p~~-----~~~~~~la~~~~~~g~~~~ 224 (292)
+|+..++++++.+|++....+..+.++...+. ..+++|+..|+++++.. |+. ..++..+|.++...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999997666666665554432 22888999999988764 542 3689999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 022777 225 AEGLLLDALNKDAKDPETLANLVVCSLHQ 253 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 253 (292)
|+..|+++++++|+++.++-.++.+....
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 99999999999999999998877665443
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=9.7e-25 Score=194.66 Aligned_cols=234 Identities=9% Similarity=-0.076 Sum_probs=209.1
Q ss_pred hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCC-hhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhH
Q 022777 15 NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGS-YQLVISEIDES---AATPLQAVKLLALYLSSPDNKES 89 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~-~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~ 89 (292)
.+...|++++|++.. +++.++|. +..+++.+|.++..+|+ +++|+..++++ +|.+..++..++.++...|++++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Confidence 446679999999995 48888999 48999999999999997 99999999988 78889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHh-CCChHHH-----HHH
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLK-MHRSDYA-----ERQ 158 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~-~~~~~~A-----~~~ 158 (292)
|+..|++++.. +|++..+++.+|.++...|++++|+..|++ |.+..++..+|.++.. .|.+++| +..
T Consensus 185 Al~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 185 ELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999998 8999999999999999 5665888 589
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC---------CHHHHHHHH
Q 022777 159 LRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG---------NFDEAEGLL 229 (292)
Q Consensus 159 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~ 229 (292)
+++++.++|++...+..+++++...+.+++++|+..+.++ +..|+++.++..+|.++.++| .+++|+..|
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 9999999999987666666655444444799999999998 999999999999999999985 359999999
Q ss_pred HHH-HhhCCCCHHHHHHHHHHHHh
Q 022777 230 LDA-LNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 230 ~~a-l~~~p~~~~~~~~l~~~~~~ 252 (292)
+++ ++++|.....|..++..+..
T Consensus 342 ~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 342 EILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHH
Confidence 999 99999999999999887654
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=4.4e-23 Score=170.77 Aligned_cols=206 Identities=12% Similarity=0.004 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
..++..+|..+...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.+..++..++.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 344555666666667777777777777766 677777777777777777777777777765 5566677777777
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 225 (292)
+...|++++|+..++++++..|++.......+.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK--LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777777777666555544444443 34577777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhh
Q 022777 226 EGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSG 280 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~ 280 (292)
+..|++++...|+++.++..+|.++...|++ |.++++++.+.+|+++.+......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 7777777777777777777777777777776 777777777777777766554433
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=8.6e-23 Score=175.70 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=189.6
Q ss_pred hhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCchHHHHHHHHHhhcCC
Q 022777 10 LFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-----AATPLQAVKLLALYLSSP 84 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~~~a~~~la~~~~~~ 84 (292)
++.++.++..|+++.|+.. +...+|. ...++..++..+...|+.++|+..+++. .|.+..++..+|.++...
T Consensus 38 ~~l~r~yi~~g~~~~al~~--~~~~~~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDE--IKPSSAP-ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHH--SCTTSCH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHH--hcccCCh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 4556788889999999987 4444665 5788888999999999999999999874 366788899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHH--HHHHhCCChHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNV--QIFLKMHRSDYAER 157 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a--~~~~~~~~~~~A~~ 157 (292)
|++++|+..+++ |+++.++..+|.++..+|++++|++.|++ |++.......+ .++...|++++|+.
T Consensus 115 g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 115 QNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp TCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999998865 78899999999999999999999999987 55543333322 45556799999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC
Q 022777 158 QLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE-AEGLLLDALNKD 236 (292)
Q Consensus 158 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~ 236 (292)
.++++++..|++.......+.+++. .|++++|...|++++..+|+++.+++++|.++...|++.+ +..+++++++++
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMA--QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999998777766666554 4679999999999999999999999999999999999987 578999999999
Q ss_pred CCCHHHH
Q 022777 237 AKDPETL 243 (292)
Q Consensus 237 p~~~~~~ 243 (292)
|+++.+.
T Consensus 266 P~~~~~~ 272 (291)
T 3mkr_A 266 RSHPFIK 272 (291)
T ss_dssp TTCHHHH
T ss_pred CCChHHH
Confidence 9999876
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=4.5e-23 Score=164.49 Aligned_cols=167 Identities=11% Similarity=0.043 Sum_probs=127.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 022777 105 SNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWL 179 (292)
Q Consensus 105 ~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 179 (292)
+++.+++.+|.++...|++++|+..|++ |++++++..+|.+|...|++++|+..++++....|++.......+.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 4567777778888888888888877776 67777777778888888888888888888877777776555555544
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--H
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--T 257 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a 257 (292)
... .+++++|...+.+++...|+++.++..+|.++..+|++++|+..|+++++++|+++.+++++|.++...|++ |
T Consensus 83 ~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFM--IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 443 345788888888888888888888888888888888888888888888888888888888888888888877 7
Q ss_pred HHHHHHHHhhCCCChh
Q 022777 258 SRYLNQLKLTHPDHML 273 (292)
Q Consensus 258 ~~~~~~~~~~~P~~~~ 273 (292)
.++++++++++|+++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 7888888887777654
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2e-23 Score=172.90 Aligned_cols=212 Identities=17% Similarity=0.112 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
....++.+|.++...|++++|+..++++ .|.+..++..++.++...|++++|+..+++++.. .|++..++..+|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 4566778899999999999999999987 5667889999999999899999999999999998 8999999999999
Q ss_pred HHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHH
Q 022777 116 IFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~ 190 (292)
++...|++++|+..+++ |.++.++..++.++...|++++|+..++++++..|++.......+.++... |++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--GMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--CCHHH
Confidence 99999999999999987 678899999999999999999999999999999999877666666655544 56999
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
|+..|++++...|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+....|
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999988877654433
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=2.5e-22 Score=163.98 Aligned_cols=208 Identities=11% Similarity=0.024 Sum_probs=168.4
Q ss_pred CchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHH
Q 022777 68 ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALN 142 (292)
Q Consensus 68 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~ 142 (292)
|.+..++..++.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 334666777777777778888888888888777 788888888888888888888888888876 6677788888
Q ss_pred HHHHHhC-CChHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc
Q 022777 143 VQIFLKM-HRSDYAERQLRAMQQ--IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM 219 (292)
Q Consensus 143 a~~~~~~-~~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 219 (292)
+.++... |++++|+..++++++ .+|.+.......+.++.. .|++++|+..|+++++..|+++.++..+|.++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 8888888 888888888888888 556555555555554443 45699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 220 GNFDEAEGLLLDALNKDA-KDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
|++++|+..+++++...| +++.++..++.++...|+. +..+++.+.+.+|+++.+..+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 999999999999999999 8888888788888888887 78888888888999998876653
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=1.9e-22 Score=168.29 Aligned_cols=205 Identities=14% Similarity=0.002 Sum_probs=167.2
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
..++..++.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 566777777777778888888888888877 788888888888888888888888888876 6677788888888
Q ss_pred HHhCCChHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 146 FLKMHRSDYAERQLRAMQQ--IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
+...|++++|+..+++++. ..|.+.......+.++.. .|++++|+..|++++...|+++.++..+|.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888 667766555555555444 456888999998888888888888888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
+|+..+++++...|+++.++..++.++...|++ |.++++++.+.+|+++.+..+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 999999998888888888888888888888887 88888888888998888776543
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=6.9e-22 Score=167.52 Aligned_cols=229 Identities=10% Similarity=-0.037 Sum_probs=197.5
Q ss_pred CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CCchHHHHHHHHHhhcC----CCChhHHHHHHHHHhcCCCCCccHHH
Q 022777 35 PPDDAVERDCLVYRSYIALGSYQLVISEIDES-AATPLQAVKLLALYLSS----PDNKESTISSLKEWLSDPAIGSNATL 109 (292)
Q Consensus 35 ~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~p~~~~~ 109 (292)
+|. ++.+++.+|.++...|++++|+.+++++ .+.+..++..++.++.. .+++++|+..|++++.. +++.+
T Consensus 2 ~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a 76 (273)
T 1ouv_A 2 AEQ-DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNG 76 (273)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355 4688999999999999999999999988 66667888999999888 89999999999999876 37899
Q ss_pred HHHHHHHHHh----cCCHHHHHHHhhc---CCchhHHHHHHHHHHh----CCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 022777 110 RLIAGIIFMH----EEDYNEALKHTNA---GGTMELHALNVQIFLK----MHRSDYAERQLRAMQQIDEDHTLTQLANAW 178 (292)
Q Consensus 110 ~~~la~~~~~----~g~~~~A~~~~~~---~~~~~~~~~~a~~~~~----~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 178 (292)
++.+|.++.. .|++++|+.+|++ .+++.++..+|.+|.. .+++++|+..++++++..+......++ .
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg--~ 154 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG--S 154 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH--H
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH--H
Confidence 9999999999 9999999999998 5788999999999999 999999999999999987544443443 3
Q ss_pred HHHHh--ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 179 LNLAV--GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 179 ~~l~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
++... ..+++++|+..|+++++. +++.+++.+|.++.. .+++++|+..|+++++.+| +.+++++|.++..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 33321 146799999999999987 458899999999999 9999999999999999866 8899999999998
Q ss_pred ----cCCc--HHHHHHHHHhhCCCChhH
Q 022777 253 ----QGKS--TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 253 ----~g~~--a~~~~~~~~~~~P~~~~~ 274 (292)
.+++ |.++++++.+..|+++..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 7877 999999999999987654
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=7.1e-22 Score=164.83 Aligned_cols=208 Identities=13% Similarity=0.048 Sum_probs=187.4
Q ss_pred CCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHH
Q 022777 33 NLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATL 109 (292)
Q Consensus 33 ~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~ 109 (292)
..+|.+.+.+++.+|.++...|++++|+..++++ .|....++..++.++...|++++|+..+++++.. .|+++.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHH
Confidence 3567755889999999999999999999999987 6667889999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhc-------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 110 RLIAGIIFMHEEDYNEALKHTNA-------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 110 ~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
+..+|.++...|++++|+.++++ |..+.++..++.++...|++++|+..++++++..|.+.......+.++..
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999999999986 34556788999999999999999999999999999987666666655554
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 244 (292)
.|++++|+..+++++...|+++.++..++.++...|++++|...++++++..|+++.+..
T Consensus 188 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 188 --EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp --TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred --cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 467999999999999999999999999999999999999999999999999999998764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-23 Score=172.16 Aligned_cols=226 Identities=14% Similarity=0.033 Sum_probs=193.9
Q ss_pred hhhhh-hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch-------HHHHHHH
Q 022777 10 LFNLR-NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATP-------LQAVKLL 77 (292)
Q Consensus 10 ~~~~~-~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~-------~~a~~~l 77 (292)
+..++ .++..|+|++|+... +.++.+ . +..+++.+|.++..+|++++|+..++++ .|.. ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-K-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh-c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 34333 667789999999994 454444 3 4678999999999999999999999876 2222 5788899
Q ss_pred HHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCCh
Q 022777 78 ALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRS 152 (292)
Q Consensus 78 a~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~ 152 (292)
+.++...|++++|+..+++++.. .|. +.++...|++++|+..+++ |..+.++..+|.++...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999987 665 4667888999999999987 56778899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
++|+..++++++.+|++.......+.++.. .|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAK--LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998666666665554 467999999999999999999999999999999999999999999999
Q ss_pred HhhC------CCCHHHHHHHHHH
Q 022777 233 LNKD------AKDPETLANLVVC 249 (292)
Q Consensus 233 l~~~------p~~~~~~~~l~~~ 249 (292)
++++ |++..++..++.+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9999 9999888777654
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=1.7e-22 Score=161.16 Aligned_cols=168 Identities=13% Similarity=0.018 Sum_probs=154.7
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHH
Q 022777 70 PLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQ 144 (292)
Q Consensus 70 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~ 144 (292)
....+..+|.++...|++++|+..|+++++. +|+++.++..+|.++...|++++|+..+.+ |.++.+...++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567788999999899999999999999998 999999999999999999999999999987 788899999999
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 224 (292)
++...++++.|...+.+++..+|++.......+.++.. .|++++|+..|+++++.+|+++.+++.+|.++..+|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS--MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999998777776766654 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHH
Q 022777 225 AEGLLLDALNKDAKDPE 241 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~ 241 (292)
|+..|+++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998754
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.9e-22 Score=170.06 Aligned_cols=216 Identities=11% Similarity=0.021 Sum_probs=103.9
Q ss_pred hhccHHHHHhhc-cCCCC---CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHH
Q 022777 18 YLGAYQAAINNS-DLTNL---PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 18 ~~g~~~~Ai~~~-~~~~~---~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
..|++++|+... ++++. +|.....+++.+|.++...|++++|+..++++ .|.+..++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 345556665552 22222 11123455555555555555555555555544 344455555555555555555555
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++......+ ++...|++++|+..+++++..
T Consensus 97 ~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc
Confidence 5555555554 455555555555555555555555555554 33333222222 223445555555555555554
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM----TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.|++..... .+ .+..+.++.++|+..+++++...|. ++.++..+|.++...|++++|+..|++++..+|++
T Consensus 174 ~~~~~~~~~-~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 SDKEQWGWN-IV--EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp SCCCSTHHH-HH--HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred CCcchHHHH-HH--HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 444321111 11 1122233345555555554444332 24455555555555555555555555555555544
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=4e-21 Score=156.73 Aligned_cols=207 Identities=12% Similarity=0.007 Sum_probs=186.1
Q ss_pred CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHH
Q 022777 35 PPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRL 111 (292)
Q Consensus 35 ~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~ 111 (292)
+|. .+.+++.+|.++...|++++|+..++++ .|.+..++..++.++...|++++|+..+++++.. .|+++.++.
T Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 80 (225)
T 2vq2_A 4 ANQ-VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINN 80 (225)
T ss_dssp CCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred Ccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHH
Confidence 455 6889999999999999999999999987 6667888999999999899999999999999998 899999999
Q ss_pred HHHHHHHhc-CCHHHHHHHhhc-------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 022777 112 IAGIIFMHE-EDYNEALKHTNA-------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 183 (292)
Q Consensus 112 ~la~~~~~~-g~~~~A~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 183 (292)
.+|.++... |++++|+..+++ |....++..+|.++...|++++|+..++++++..|++.......+.++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML- 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-
Confidence 999999999 999999999987 23367888999999999999999999999999999987666666665554
Q ss_pred ccccHHHHHHHHHHhHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYP-MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
.|++++|+..+++++...| +++..+..++.++...|++++|..+++.+...+|+++.+...+
T Consensus 160 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 160 -AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 4569999999999999999 9999999999999999999999999999999999999876443
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.3e-22 Score=180.59 Aligned_cols=254 Identities=10% Similarity=-0.026 Sum_probs=171.9
Q ss_pred hhhhhccHHHHHhhc-cCCC---------CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--------C---CchHHH
Q 022777 15 NNFYLGAYQAAINNS-DLTN---------LPPDDAVERDCLVYRSYIALGSYQLVISEIDES--------A---ATPLQA 73 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~---------~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--------~---~~~~~a 73 (292)
.++.+|+|++|++.. +.++ ..|. ...++.-+|.+|..+|++++|+.+++++ . +.....
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 556689999998873 3322 2444 3456677899999999999998888754 1 112344
Q ss_pred HHHHH--HhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh---cCCHHHHHHHhhc-----CCchhHHHHHH
Q 022777 74 VKLLA--LYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH---EEDYNEALKHTNA-----GGTMELHALNV 143 (292)
Q Consensus 74 ~~~la--~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-----~~~~~~~~~~a 143 (292)
+..++ .+....+++++|+..|++++.. +|+++.++..+|.++.. .|++++|+..+++ |.++.++..++
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 44443 3444567789999999999888 89998888888877543 4666777777765 56666666665
Q ss_pred HHHH----hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc
Q 022777 144 QIFL----KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM 219 (292)
Q Consensus 144 ~~~~----~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 219 (292)
..+. ..|++++|...+++++..+|++.......+.++.. .|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR--KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH--cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4433 34566777777777777777776555544444433 34577777777777777777777777777776543
Q ss_pred -------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 220 -------------------GNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 220 -------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
+.+++|+..+++++.++|.++.++.++|.++...|++ |.++++++++..|++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 3356677777777777777777777777777777776 77777777777766653
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=3.2e-21 Score=176.84 Aligned_cols=184 Identities=13% Similarity=-0.036 Sum_probs=99.4
Q ss_pred hHHHHHHHHHhhcCCCCh-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHH
Q 022777 70 PLQAVKLLALYLSSPDNK-ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNV 143 (292)
Q Consensus 70 ~~~a~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a 143 (292)
...++..+|.++...|++ ++|+..|++++.. +|+++.++..+|.+|...|++++|+.+|++ |+ ..++..+|
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 345555555555555555 5555555555555 555555555555555555555555555554 22 34555555
Q ss_pred HHHHhC---------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----cc--ccHHHHHHHHHHhHhhCC---CC
Q 022777 144 QIFLKM---------HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV----GG--SKIQEAYLIFQDFSEKYP---MT 205 (292)
Q Consensus 144 ~~~~~~---------~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~----~~--~~~~~A~~~~~~~~~~~p---~~ 205 (292)
.++... |++++|+..++++++.+|++...+..++.++... +. |++++|+..|++++...| ++
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 555555 5555555555555555555544443333333322 11 345555555555555555 55
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+.+++++|.++...|++++|+..|+++++++|+++.++.+++.++...|+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555543
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-21 Score=174.83 Aligned_cols=252 Identities=13% Similarity=0.009 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc------------CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC------C
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES------------AATPLQAVKLLALYLSSPDNKESTISSLKEWLSD------P 101 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~------~ 101 (292)
+..+..+|.++..+|++++|+..++++ .+....++..+|.++..+|++++|+..+++++.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456677999999999999999999865 2334667889999999999999999999888742 1
Q ss_pred CCCccHHHHHHHHHHHHh--cCCHHHHHHHhhc-----CCchhHHHHHHHHH---HhCCChHHHHHHHHHHHhhCCCcHH
Q 022777 102 AIGSNATLRLIAGIIFMH--EEDYNEALKHTNA-----GGTMELHALNVQIF---LKMHRSDYAERQLRAMQQIDEDHTL 171 (292)
Q Consensus 102 ~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~-----~~~~~~~~~~a~~~---~~~~~~~~A~~~l~~~~~~~p~~~~ 171 (292)
..+..+.++..+|.+++. .+++++|+.+|++ |++++++..++.++ ...++.++|+..++++++++|++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 135567888888876665 4579999999998 88999988887764 4568889999999999999999875
Q ss_pred HHHHHHH--HHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 172 TQLANAW--LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 172 ~~l~~a~--~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
.....+. ..+....+++++|...+++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 4433332 22333347799999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcC-------------------Cc--HHHHHHHHHhhCCCChh----HHhHHhhHHHHHHHHhhc
Q 022777 250 SLHQG-------------------KS--TSRYLNQLKLTHPDHML----VKRASSGDESFERALQSV 291 (292)
Q Consensus 250 ~~~~g-------------------~~--a~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~~~ 291 (292)
|...+ .. |...++++.+.+|+++. ...+....++|++|+..|
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 75421 11 67788999999999875 334566677777777654
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.3e-21 Score=179.48 Aligned_cols=201 Identities=11% Similarity=0.002 Sum_probs=182.4
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCH-HHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHH
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDY-NEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
..++++..+.+.... .|.++.+++.+|.++...|++ ++|+..|++ |.+++++..+|.+|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 577888888888887 899999999999999999999 999999998 788999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc--------CCH
Q 022777 160 RAMQQIDEDHTLTQLANAWLNLAVGG---------SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM--------GNF 222 (292)
Q Consensus 160 ~~~~~~~p~~~~~~l~~a~~~l~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------g~~ 222 (292)
+++++.+|+ ......++.++ ... |++++|+..|+++++.+|+++.+++.+|.++... |++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVL--RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHH--TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHH--HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999999999 44444444443 345 7899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH----hHHhhHHHHHHHHhhc
Q 022777 223 DEAEGLLLDALNKDA---KDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK----RASSGDESFERALQSV 291 (292)
Q Consensus 223 ~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~----~~~~~~~~~~~~~~~~ 291 (292)
++|+..|+++++++| +++.+++++|.++...|++ |...++++++++|+++.+. .+....+++++|+..|
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999998 9999999999999999643 4578888999998765
No 46
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=4.3e-21 Score=158.26 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 72 QAVKLLALYLSSPDNKESTISSLKEWLSDPAIG-SNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 72 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
.++..+|.++...|++++|+..|++++.. .| .+..+++.+|.++...|++++|+..+++ |.++.++..+|.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44444444444445555555555555544 34 4444444455555555555555555544 3444444555555
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHHHHHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLT-------QLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILNGKAVCC 216 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~-------~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~ 216 (292)
+..+|++++|+..++++++.+|++... ....+.++. ..|++++|+..|+++++.+|+ ++.++..+|.++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ--QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH--HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 555555555555555555555444311 111111111 123455555555555555554 444555555554
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHh
Q 022777 217 MHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASS 279 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~ 279 (292)
...|+ ..+.++..+.+.++..... ......+.+ |..+++++++++|+++.+..+..
T Consensus 164 ~~~~~-----~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 164 YNNGA-----DVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHH-----HHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 43322 2233333333333222111 111112222 78889999999999988776543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=5.4e-22 Score=167.23 Aligned_cols=239 Identities=11% Similarity=-0.012 Sum_probs=201.3
Q ss_pred HHHHHhhCChhHHHHhhhhc-C-----C-chHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh
Q 022777 47 YRSYIALGSYQLVISEIDES-A-----A-TPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH 119 (292)
Q Consensus 47 a~~~~~~g~~~~Al~~~~~a-~-----~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~ 119 (292)
+..+...|++++|+..++++ . + ....++..++.++...|++++|+..+++++.. .|+++.++..+|.++..
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 34444567888999988876 1 2 24778889999999999999999999999998 89999999999999999
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLI 194 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~ 194 (292)
.|++++|+..|++ |.++.++..+|.++...|++++|+..++++++.+|++....+.... ....|++++|+..
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL---AEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---HHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH---HHHhcCHHHHHHH
Confidence 9999999999998 7889999999999999999999999999999999998744333222 2234679999999
Q ss_pred HHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCc--HHHHHHHHHhhC
Q 022777 195 FQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD----PETLANLVVCSLHQGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 195 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 268 (292)
+++++...|++...+ .++.++...++.++|+..+++++...|.. +.+++.+|.++...|++ |.++++++++.+
T Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999998887655 47888889999999999999999887743 78899999999999998 999999999999
Q ss_pred CCChhH-HhHHhhHHHHHHHHhhc
Q 022777 269 PDHMLV-KRASSGDESFERALQSV 291 (292)
Q Consensus 269 P~~~~~-~~~~~~~~~~~~~~~~~ 291 (292)
|++... .......++|++|++.|
T Consensus 246 p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHHHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhhHHHH
Confidence 977653 34677889999988764
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=1.6e-21 Score=186.72 Aligned_cols=168 Identities=14% Similarity=0.025 Sum_probs=153.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q 022777 102 AIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLAN 176 (292)
Q Consensus 102 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~ 176 (292)
..|++++++..+|.++..+|++++|+..|++ |++.+++..+|.+|..+|++++|+..|+++++++|++......+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3799999999999999999999999999998 88999999999999999999999999999999999998666666
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 177 AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 177 a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+.++.. .|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++++++.++|.++...|++
T Consensus 84 g~~l~~--~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKE--MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 655544 467999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHhhCCCC
Q 022777 257 --TSRYLNQLKLTHPDH 271 (292)
Q Consensus 257 --a~~~~~~~~~~~P~~ 271 (292)
|.+.+++++++.|++
T Consensus 162 ~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 162 TDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhH
Confidence 999999988876553
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3e-20 Score=160.76 Aligned_cols=215 Identities=10% Similarity=0.008 Sum_probs=184.7
Q ss_pred hHHHHhhhhc---CCchHHHHHHHHHhhc-------CCCCh-------hHHHHHHHHHhc-CCCCCccHHHHHHHHHHHH
Q 022777 57 QLVISEIDES---AATPLQAVKLLALYLS-------SPDNK-------ESTISSLKEWLS-DPAIGSNATLRLIAGIIFM 118 (292)
Q Consensus 57 ~~Al~~~~~a---~~~~~~a~~~la~~~~-------~~~~~-------~~A~~~~~~~l~-~~~~p~~~~~~~~la~~~~ 118 (292)
++|+..|+++ .|.+..+|..++.++. ..|+. ++|+..|++++. . .|++..++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 5677788777 6777888888888765 24775 899999999998 6 7999999999999999
Q ss_pred hcCCHHHHHHHhhc-----CCchh-HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHH
Q 022777 119 HEEDYNEALKHTNA-----GGTME-LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 119 ~~g~~~~A~~~~~~-----~~~~~-~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~ 192 (292)
..|++++|...|++ |.+++ ++..++.++...|++++|+..|+++++.+|.+....+..+++... ..|++++|+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH-TSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCHHHHH
Confidence 99999999999998 56666 899999999999999999999999999998886555544433221 246799999
Q ss_pred HHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 193 LIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK---DAK-DPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 193 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
.+|+++++.+|+++.++..+|.++...|++++|+..|++++.. +|+ +..+|..++.++...|+. +..+++++.+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 554 788999999999889987 8999999999
Q ss_pred hCCCChhH
Q 022777 267 THPDHMLV 274 (292)
Q Consensus 267 ~~P~~~~~ 274 (292)
.+|+++..
T Consensus 270 ~~p~~~~~ 277 (308)
T 2ond_A 270 AFREEYEG 277 (308)
T ss_dssp HTTTTTSS
T ss_pred Hccccccc
Confidence 99987643
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=1.4e-20 Score=155.17 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CC-chHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AA-TPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
+++++.+|.++...|++++|+..++++ .| ++..++..+|.++...|++++|+..+++++.. +|+++.++..+|.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 467899999999999999999999987 56 67788888999999999999999999999998 9999999999999
Q ss_pred HHHhcCCHHHHHHHhhc-----CCch-------hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHH
Q 022777 116 IFMHEEDYNEALKHTNA-----GGTM-------ELHALNVQIFLKMHRSDYAERQLRAMQQIDED--HTLTQLANAWLNL 181 (292)
Q Consensus 116 ~~~~~g~~~~A~~~~~~-----~~~~-------~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~~l 181 (292)
++...|++++|+..+++ |.++ .++..+|.++...|++++|+..++++++.+|+ +.......+.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999997 7777 56889999999999999999999999999999 7655555554443
Q ss_pred HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
..+...++++....+.++..+ .+......+.+++|+..|+++++++|++++++..++.+..
T Consensus 165 -------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 -------NNGADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -------HHHHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 334455677777777776544 5566777888999999999999999999999988876643
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=3.9e-20 Score=155.81 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=112.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc---hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---H
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT---MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---L 171 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~ 171 (292)
.|.++..++.+|..++..|++++|+..|++ |.+ ++++..+|.++..+|++++|+..++++++..|++. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 344555555555555555555555555554 333 44555555555555555555555555555544331 1
Q ss_pred HHHHHHHHHHH------hccccHHHHHHHHHHhHhhCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 022777 172 TQLANAWLNLA------VGGSKIQEAYLIFQDFSEKYPMTGLI-----------------LNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 172 ~~l~~a~~~l~------~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 228 (292)
..+..+.+++. ...|++++|+..|++++..+|+++.+ ++.+|.++...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 12222222222 00344555555555555555554433 38889999999999999999
Q ss_pred HHHHHhhCCC---CHHHHHHHHHHHHhc----------CCc--HHHHHHHHHhhCCCChhHHhHHhhHHH
Q 022777 229 LLDALNKDAK---DPETLANLVVCSLHQ----------GKS--TSRYLNQLKLTHPDHMLVKRASSGDES 283 (292)
Q Consensus 229 ~~~al~~~p~---~~~~~~~l~~~~~~~----------g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~ 283 (292)
|+++++..|+ .+++++.+|.++... |++ |...++++++.+|+++.+.......+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 240 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR 240 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999998 567899999998876 665 899999999999999876665444433
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=171.34 Aligned_cols=254 Identities=9% Similarity=-0.032 Sum_probs=202.6
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchH---HHHHHHHHHHHHhhCChhHHHHhhhhc--------CCc-hHHHHHHHH
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDA---VERDCLVYRSYIALGSYQLVISEIDES--------AAT-PLQAVKLLA 78 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~---~~a~~~la~~~~~~g~~~~Al~~~~~a--------~~~-~~~a~~~la 78 (292)
....++..|++++|+... +++...|.+. ..++..+|.++...|++++|+..++++ +++ ...++..++
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 344667799999999994 4555566542 467888999999999999999998865 122 256788899
Q ss_pred HhhcCCCChhHHHHHHHHHhcCCCCCc------cHHHHHHHHHHHHhcCC--------------------HHHHHHHhhc
Q 022777 79 LYLSSPDNKESTISSLKEWLSDPAIGS------NATLRLIAGIIFMHEED--------------------YNEALKHTNA 132 (292)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~l~~~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 132 (292)
.++...|++++|+..+++++.. .|. ...++..+|.++...|+ +++|+..+.+
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDI--SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999899999999999998865 333 25589999999999999 9999999886
Q ss_pred --------C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---H---HHHHHHHHHHHHhccccHHHHHHHH
Q 022777 133 --------G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---T---LTQLANAWLNLAVGGSKIQEAYLIF 195 (292)
Q Consensus 133 --------~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---~---~~~l~~a~~~l~~~~~~~~~A~~~~ 195 (292)
+ ....++..+|.++...|++++|+..++++++..|.. . ......+.++. ..|++++|+..+
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~ 250 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHH
Confidence 1 223467788999999999999999999999874332 1 12223333333 356799999999
Q ss_pred HHhHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHH
Q 022777 196 QDFSEKYPMT------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 196 ~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
++++...|.. +.++..+|.++...|++++|+..|++++.+.+.. +.++.++|.++...|++ |..++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998776654 6789999999999999999999999999885544 66788999999999998 99999
Q ss_pred HHHHhhCC
Q 022777 262 NQLKLTHP 269 (292)
Q Consensus 262 ~~~~~~~P 269 (292)
++++++.+
T Consensus 331 ~~al~~~~ 338 (406)
T 3sf4_A 331 EKHLEISR 338 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887643
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=2.9e-20 Score=157.43 Aligned_cols=229 Identities=10% Similarity=-0.009 Sum_probs=190.0
Q ss_pred ccCCCchhhhh-hhhhhccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHh----hCChhHHHHhhhhc-CCchHHHHHH
Q 022777 4 AAAPDHLFNLR-NNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIA----LGSYQLVISEIDES-AATPLQAVKL 76 (292)
Q Consensus 4 ~~~~~~~~~~~-~~~~~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~----~g~~~~Al~~~~~a-~~~~~~a~~~ 76 (292)
.|+++-++.++ .++..|++++|+... +..+ |. +..+++.+|.+|.. .|++++|+.+++++ ...+..++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666665 556689999999994 3444 55 35788999999999 99999999999988 3446788899
Q ss_pred HHHhhcC----CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHhhc---CCchhHHHHHHHH
Q 022777 77 LALYLSS----PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH----EEDYNEALKHTNA---GGTMELHALNVQI 145 (292)
Q Consensus 77 la~~~~~----~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~---~~~~~~~~~~a~~ 145 (292)
++.++.. .+++++|+..|++++.. +++.+++.+|.+|.. .|++++|+.+|++ .+++.+...++.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999887 89999999999999875 378999999999999 9999999999998 5688899999999
Q ss_pred HHh----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh-
Q 022777 146 FLK----MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV--GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH- 218 (292)
Q Consensus 146 ~~~----~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~- 218 (292)
|.. .+++++|+..++++++..+... ....+.++... ..+++++|+..|+++++..| +.++..+|.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPG--CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 998 9999999999999998854333 33334444430 04679999999999999866 8889999999999
Q ss_pred ---cCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 219 ---MGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 219 ---~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.+++++|+..|+++++..|+++..+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998866544
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=2.2e-21 Score=167.02 Aligned_cols=256 Identities=9% Similarity=-0.033 Sum_probs=199.2
Q ss_pred hhhhhhhhccHHHHHhhc-cCCCCCCchH---HHHHHHHHHHHHhhCChhHHHHhhhhc--------CCc-hHHHHHHHH
Q 022777 12 NLRNNFYLGAYQAAINNS-DLTNLPPDDA---VERDCLVYRSYIALGSYQLVISEIDES--------AAT-PLQAVKLLA 78 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~-~~~~~~p~~~---~~a~~~la~~~~~~g~~~~Al~~~~~a--------~~~-~~~a~~~la 78 (292)
....++..|++++|+... ++++..|.+. ..++..++.++...|++++|+..++++ +++ ...++..++
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344667899999999994 4555566642 467788999999999999999998865 122 256778899
Q ss_pred HhhcCCCChhHHHHHHHHHhcCCCCCc------cHHHHHHHHHHHHhcCC--------------------HHHHHHHhhc
Q 022777 79 LYLSSPDNKESTISSLKEWLSDPAIGS------NATLRLIAGIIFMHEED--------------------YNEALKHTNA 132 (292)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~l~~~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 132 (292)
.++...|++++|+..+++++.. .|. ...++..+|.++...|+ +++|+..+++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDI--SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH--HHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999899999999999998764 222 24588999999999999 9999999876
Q ss_pred --------C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---H---HHHHHHHHHHHHhccccHHHHHHHH
Q 022777 133 --------G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---T---LTQLANAWLNLAVGGSKIQEAYLIF 195 (292)
Q Consensus 133 --------~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---~---~~~l~~a~~~l~~~~~~~~~A~~~~ 195 (292)
+ ....++..++.++...|++++|+..++++++..|.. . ......+.++. ..|++++|+..+
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~ 246 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HcCCHHHHHHHH
Confidence 1 123467788999999999999999999999874332 1 12222333333 346799999999
Q ss_pred HHhHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHH
Q 022777 196 QDFSEKYPMT------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 196 ~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
++++...|.. +.++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++ |..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9988775554 6789999999999999999999999999875543 44788899999999998 99999
Q ss_pred HHHHhhCCCC
Q 022777 262 NQLKLTHPDH 271 (292)
Q Consensus 262 ~~~~~~~P~~ 271 (292)
+++.++.|+.
T Consensus 327 ~~a~~~~~~~ 336 (338)
T 3ro2_A 327 EKHLEISREV 336 (338)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=2.4e-21 Score=173.05 Aligned_cols=256 Identities=9% Similarity=-0.022 Sum_probs=203.9
Q ss_pred hhhhhhccHHHHHhhc-cCCCCCCchH---HHHHHHHHHHHHhhCChhHHHHhhhhc--------CCc-hHHHHHHHHHh
Q 022777 14 RNNFYLGAYQAAINNS-DLTNLPPDDA---VERDCLVYRSYIALGSYQLVISEIDES--------AAT-PLQAVKLLALY 80 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~-~~~~~~p~~~---~~a~~~la~~~~~~g~~~~Al~~~~~a--------~~~-~~~a~~~la~~ 80 (292)
..++..|+|++|+... +++...|.+. ..++..+|.+|..+|++++|+..++++ +++ ...++..++.+
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3567789999999994 4666666642 257888999999999999999998865 122 36678889999
Q ss_pred hcCCCChhHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCC-----------------HHHHHHHhhc-------
Q 022777 81 LSSPDNKESTISSLKEWLSD----PAIGSNATLRLIAGIIFMHEED-----------------YNEALKHTNA------- 132 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~----~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~------- 132 (292)
+...|++++|+..+++++.. +..|....++..+|.++...|+ +++|+.++++
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754 1135567789999999999999 9999999886
Q ss_pred -C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC
Q 022777 133 -G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT------LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY 202 (292)
Q Consensus 133 -~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~------~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~ 202 (292)
+ ....++..+|.++...|++++|+..++++++..|... ......+.++ ...|++++|+..|++++...
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH--IFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--HHCcCHHHHHHHHHHHHHHH
Confidence 1 2234677899999999999999999999998754321 1222223333 34577999999999998876
Q ss_pred CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHHHHHHhhC
Q 022777 203 PMT------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 203 p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 268 (292)
|.. +.++..+|.++...|++++|+..|++++.+.+.. ..++.++|.++...|++ |..++++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 643 6789999999999999999999999999885443 45788999999999998 999999999876
Q ss_pred CCC
Q 022777 269 PDH 271 (292)
Q Consensus 269 P~~ 271 (292)
+..
T Consensus 374 ~~~ 376 (411)
T 4a1s_A 374 XXX 376 (411)
T ss_dssp CHH
T ss_pred hhc
Confidence 543
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.2e-19 Score=163.09 Aligned_cols=275 Identities=8% Similarity=0.018 Sum_probs=211.1
Q ss_pred ccCCCchhhhhhhhh-----hccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHh----hCChhHHHHhhhhc-CCchHH
Q 022777 4 AAAPDHLFNLRNNFY-----LGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIA----LGSYQLVISEIDES-AATPLQ 72 (292)
Q Consensus 4 ~~~~~~~~~~~~~~~-----~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~----~g~~~~Al~~~~~a-~~~~~~ 72 (292)
.|+++..+.++..+. .+++++|+... +..+. . ++.+++.+|..|.. .+++++|+.+++++ ...+..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 456666777775554 58999999983 33332 2 35788999999999 99999999999988 555677
Q ss_pred HHHHHHHhhcC----CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHhhc---CCchhHHHH
Q 022777 73 AVKLLALYLSS----PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH----EEDYNEALKHTNA---GGTMELHAL 141 (292)
Q Consensus 73 a~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~---~~~~~~~~~ 141 (292)
++..|+.++.. .+++++|+..|+++.. ++++.+++.+|.+|.. .+++++|+.+|++ .+++.+...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88889988876 6789999999999875 4578999999999998 8899999999988 678899999
Q ss_pred HHHHHHh----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 142 NVQIFLK----MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV--GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 142 ~a~~~~~----~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
++.+|.. .+++++|+..|+++.+..+... ...++.++... ..+++++|+..|+++++. .++.+++.+|.+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELG--QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 9999998 8999999999999988754333 33333333321 146799999999998875 457888999999
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CCc--HHHHHHHHHhhCCCChhHH--hHHhh--
Q 022777 216 CMH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ-----GKS--TSRYLNQLKLTHPDHMLVK--RASSG-- 280 (292)
Q Consensus 216 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~--a~~~~~~~~~~~P~~~~~~--~~~~~-- 280 (292)
+.. .+++++|+..|+++.+. +++++++++|.++... +++ |..+++++.+..+.+.... .+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 998 89999999999998764 7788999999988776 555 8889998887654433211 11111
Q ss_pred -HHHHHHHHhhc
Q 022777 281 -DESFERALQSV 291 (292)
Q Consensus 281 -~~~~~~~~~~~ 291 (292)
.+++++|+.-|
T Consensus 343 ~~~~~~~A~~~~ 354 (490)
T 2xm6_A 343 SEEEHKKAVEWF 354 (490)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcccHHHHHHHH
Confidence 33666666544
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=5.1e-19 Score=139.50 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=152.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAW 178 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 178 (292)
+.....+..+|.++...|++++|+..+++ |.++.++..++.++...|++++|+..++++++..|++.......+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33567788899999999999999999987 5778889999999999999999999999999999988766666665
Q ss_pred HHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--
Q 022777 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 179 ~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-- 256 (292)
++.. .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++
T Consensus 85 ~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQ--VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHH--hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 5544 356999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCCChhHHhH
Q 022777 257 TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~~~~~~ 277 (292)
|.++++++.+.+|+++....+
T Consensus 163 A~~~~~~~~~~~~~~~~~~~~ 183 (186)
T 3as5_A 163 ALPHFKKANELDEGASVELAL 183 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGGGG
T ss_pred HHHHHHHHHHcCCCchhhHhh
Confidence 999999999999998865543
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=3.9e-20 Score=177.05 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=153.9
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHH
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHAL 141 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~ 141 (292)
.|.+..++..||.++..+|++++|+..|+++++. +|+++.++..+|.+|..+|++++|+..|++ |++.+++..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3556888999999999999999999999999998 899999999999999999999999999987 889999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
+|.++..+|++++|+..|+++++++|++......++.++.. .|++++|+..|+++++.+|+++.++.++|.++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~--~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD--SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999999999998666666655444 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 022777 222 FDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~ 239 (292)
+++|++.+++++++.|+.
T Consensus 161 ~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhH
Confidence 999999999999987654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=164.65 Aligned_cols=251 Identities=8% Similarity=-0.068 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch----HHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CCCCccH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATP----LQAVKLLALYLSSPDNKESTISSLKEWLSD----PAIGSNA 107 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~ 107 (292)
...+++.+|.++...|++++|+..++++ .|.+ ..++..++.++...|++++|+..+++++.. +..|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4567788999999999999999999987 4444 356778999998899999999999887643 1135567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----C--C----chhHHHHHHHHHHhCCC--------------------hHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----G--G----TMELHALNVQIFLKMHR--------------------SDYAE 156 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~--~----~~~~~~~~a~~~~~~~~--------------------~~~A~ 156 (292)
.++..+|.++...|++++|+..+++ + . ...++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 8899999999999999999999987 1 1 13478889999999999 99999
Q ss_pred HHHHHHHhhC---CCc---HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH------HHHHHHHHHHHhcCCHHH
Q 022777 157 RQLRAMQQID---EDH---TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG------LILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 157 ~~l~~~~~~~---p~~---~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~ 224 (292)
..+++++... +++ .......+.++. ..|++++|+..|++++...|..+ .++..+|.++...|++++
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHY--LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9999998762 222 222233333333 34679999999999887654432 389999999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh---h-------HHhHHhhHHHHHH
Q 022777 225 AEGLLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM---L-------VKRASSGDESFER 286 (292)
Q Consensus 225 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~---~-------~~~~~~~~~~~~~ 286 (292)
|+..+++++.+.|.. ..++.++|.++...|++ |..+++++.++.|+.. . ...+....+++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999987766 67889999999999998 9999999988755442 1 2334566777888
Q ss_pred HHhhc
Q 022777 287 ALQSV 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
|+..|
T Consensus 326 A~~~~ 330 (406)
T 3sf4_A 326 AMHFA 330 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=2.2e-19 Score=151.25 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=132.3
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHhhc-----C---Cc
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSN---ATLRLIAGIIFMHEEDYNEALKHTNA-----G---GT 135 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~-----~---~~ 135 (292)
.+.+...++.+|..+...|++++|+..|++++.. .|++ +.+++.+|.++...|++++|+..|++ | ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3445566666666666667777777777777766 6666 67777777777777777777777766 3 23
Q ss_pred hhHHHHHHHHHHh--------CCChHHHHHHHHHHHhhCCCcHHHH-----------------HHHHHHHHHhccccHHH
Q 022777 136 MELHALNVQIFLK--------MHRSDYAERQLRAMQQIDEDHTLTQ-----------------LANAWLNLAVGGSKIQE 190 (292)
Q Consensus 136 ~~~~~~~a~~~~~--------~~~~~~A~~~l~~~~~~~p~~~~~~-----------------l~~a~~~l~~~~~~~~~ 190 (292)
+.++..+|.++.. .|++++|+..++++++.+|++.... +..+.++. ..|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE--RRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHH
Confidence 4566677777777 7888888888888888877764332 33344443 3567999
Q ss_pred HHHHHHHhHhhCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHh
Q 022777 191 AYLIFQDFSEKYPM---TGLILNGKAVCCMHM----------GNFDEAEGLLLDALNKDAKDPETL---ANLVVCSLH 252 (292)
Q Consensus 191 A~~~~~~~~~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~ 252 (292)
|+..|+++++.+|+ .+.+++.+|.++..+ |++++|+..|+++++.+|+++.+. ..++.++..
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 99999999999998 567999999999977 999999999999999999996543 334444443
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.6e-19 Score=156.12 Aligned_cols=240 Identities=9% Similarity=-0.081 Sum_probs=191.6
Q ss_pred HHHHhhc-cCCCCCCchHHHHHHHHHHHHHh-------hCCh-------hHHHHhhhhc----CCchHHHHHHHHHhhcC
Q 022777 23 QAAINNS-DLTNLPPDDAVERDCLVYRSYIA-------LGSY-------QLVISEIDES----AATPLQAVKLLALYLSS 83 (292)
Q Consensus 23 ~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~-------~g~~-------~~Al~~~~~a----~~~~~~a~~~la~~~~~ 83 (292)
++|+... +++..+|. ++++++.++..+.. .|++ ++|+..++++ .|.+...+..++.++..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555553 35555788 57889999988764 5886 8999999987 34457789999999998
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHH-HHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHH-hCCChHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNAT-LRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFL-KMHRSDYAE 156 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~-~~~~~~~A~ 156 (292)
.|++++|+..|++++.. .|+++. ++..+|.++.+.|++++|+..|++ |.+...+...+.+.. ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998 899887 899999999999999999999998 556666665555533 379999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK---YPM-TGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
..|+++++.+|++....+..+.+ ....|++++|+.+|++++.. .|+ +..++..++.++...|++++|...++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~--~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDY--LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH--HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999987666554433 34557899999999999985 553 7889999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHhhCCCChhHHhH
Q 022777 233 LNKDAKDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 233 l~~~p~~~~~~~~l~~~~~~~g~~a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++..|++++... .+.+ ..++ +++.++|+||...+.
T Consensus 268 ~~~~p~~~~~~~-~~~~---~~r~------~~l~~~P~~~~~ln~ 302 (308)
T 2ond_A 268 FTAFREEYEGKE-TALL---VDRY------KFMDLYPCSASELKA 302 (308)
T ss_dssp HHHTTTTTSSCH-HHHH---HTTT------CBTTBCSSCHHHHHT
T ss_pred HHHcccccccch-HHHH---HHHH------HhcccCCCCHHHHHh
Confidence 999998765432 1222 1122 555689999887654
No 62
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=9.5e-20 Score=174.15 Aligned_cols=201 Identities=15% Similarity=0.026 Sum_probs=168.9
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHh--------cCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----C
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWL--------SDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----G 133 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~ 133 (292)
+|.+..+....+ ...|++++|+..+++++ .. +|++..+++.+|.++...|++++|+..|++ |
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 344444544444 45789999999999999 77 899999999999999999999999999987 8
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKA 213 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 213 (292)
++.+++..+|.++...|++++|+..|+++++.+|++....+.++.++... |++++ +..|+++++.+|+++.+++++|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~--g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA--GNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 99999999999999999999999999999999999987777666665544 56999 9999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-------HHHHHHHHHhhCCCChhHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-------TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------a~~~~~~~~~~~P~~~~~~ 275 (292)
.++..+|++++|+..|+++++++|+++.++++++.++...++. ..+..+.+....|+++...
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 9999999999999999999999999999999999998776651 3445555555566665533
No 63
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.2e-18 Score=159.97 Aligned_cols=259 Identities=9% Similarity=-0.010 Sum_probs=201.5
Q ss_pred cCCCchhhhhhhhh-----hccHHHHHhhc-cCCCCCCchHHHHHHHHHHHHHh----hCChhHHHHhhhhc-CCchHHH
Q 022777 5 AAPDHLFNLRNNFY-----LGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIA----LGSYQLVISEIDES-AATPLQA 73 (292)
Q Consensus 5 ~~~~~~~~~~~~~~-----~g~~~~Ai~~~-~~~~~~p~~~~~a~~~la~~~~~----~g~~~~Al~~~~~a-~~~~~~a 73 (292)
|+++-.+.++..+. .+++++|++.. +..+. . ++.+++.++.+|.. .+++++|+.+++++ ...+..+
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 221 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELG 221 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHH
Confidence 33344555554444 56788888873 33322 2 35678888888887 88899999999887 4455667
Q ss_pred HHHHHHhhcC----CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHhhc---CCchhHHHHH
Q 022777 74 VKLLALYLSS----PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH----EEDYNEALKHTNA---GGTMELHALN 142 (292)
Q Consensus 74 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~---~~~~~~~~~~ 142 (292)
+..++.++.. .+++++|+..|++++.. +++.+++.+|.++.. .+++++|+.+|++ ..++++...+
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~L 297 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYL 297 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888763 67889999999988754 457888999999988 8999999999988 5788889999
Q ss_pred HHHHHhC-----CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 143 VQIFLKM-----HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG-GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 143 a~~~~~~-----~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
+.+|... +++++|+..++++.+..+......++ .++...+ .+++++|+..|+++++. .++.+++.+|.++
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg--~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLG--AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH--HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 9999888 89999999999998876544443444 4333322 23799999999999886 6789999999999
Q ss_pred Hh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCc--HHHHHHHHHhhCCC---ChhHHh
Q 022777 217 MH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH----QGKS--TSRYLNQLKLTHPD---HMLVKR 276 (292)
Q Consensus 217 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~--a~~~~~~~~~~~P~---~~~~~~ 276 (292)
.. .+++++|+..|+++++. +++.+++++|.++.. .+++ |.++++++.+.+|+ ++.+..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 99 89999999999999885 579999999999987 5666 99999999999965 654433
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=9.5e-20 Score=156.72 Aligned_cols=250 Identities=8% Similarity=-0.070 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCch----HHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CCCCccHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATP----LQAVKLLALYLSSPDNKESTISSLKEWLSD----PAIGSNAT 108 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~~ 108 (292)
...++..|..+...|++++|+..++++ .|.+ ..++..++.++...|++++|+..+++++.. +..|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 456677899999999999999999987 4444 356778999998899999999999887643 11345678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc----hhHHHHHHHHHHhCCC--------------------hHHHHH
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA-----G--GT----MELHALNVQIFLKMHR--------------------SDYAER 157 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~-----~--~~----~~~~~~~a~~~~~~~~--------------------~~~A~~ 157 (292)
++..+|.++...|++++|+..+++ + .+ ..++..++.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 899999999999999999999987 1 22 3377889999999999 999999
Q ss_pred HHHHHHhhC---CCc---HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC------HHHHHHHHHHHHhcCCHHHH
Q 022777 158 QLRAMQQID---EDH---TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT------GLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 158 ~l~~~~~~~---p~~---~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A 225 (292)
.+++++... ++. .......+.++.. .|++++|+..+++++...|.. ..++..+|.++...|++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYL--LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999988762 222 1222333333333 467999999999988764432 34899999999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh----------hHHhHHhhHHHHHHH
Q 022777 226 EGLLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM----------LVKRASSGDESFERA 287 (292)
Q Consensus 226 ~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~----------~~~~~~~~~~~~~~~ 287 (292)
+..+++++.+.|.. ..++.++|.++...|++ |..+++++++..|... ....+....+++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99999999987665 67788999999999998 9999999888755432 133346667778887
Q ss_pred Hhhc
Q 022777 288 LQSV 291 (292)
Q Consensus 288 ~~~~ 291 (292)
+..|
T Consensus 323 ~~~~ 326 (338)
T 3ro2_A 323 MHFA 326 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=4.5e-20 Score=164.71 Aligned_cols=251 Identities=12% Similarity=-0.050 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchH----HHHHHHHHhhcCCCChhHHHHHHHHHhcC----CCCCccH
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATPL----QAVKLLALYLSSPDNKESTISSLKEWLSD----PAIGSNA 107 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~----~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~ 107 (292)
....++.+|..+...|++++|+..++++ .|.+. .++..++.++...|++++|+..+++++.. +..|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4566777899999999999999999987 44443 46788999988889999999999988753 1136678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc--------C---CchhHHHHHHHHHHhCCC-----------------hHHHHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA--------G---GTMELHALNVQIFLKMHR-----------------SDYAERQL 159 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~--------~---~~~~~~~~~a~~~~~~~~-----------------~~~A~~~l 159 (292)
.++..+|.++...|++++|+..+++ . ....++..+|.++...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 8999999999999999999999987 1 233467889999999999 99999999
Q ss_pred HHHHhhC---CCc---HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 022777 160 RAMQQID---EDH---TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG------LILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 160 ~~~~~~~---p~~---~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~ 227 (292)
++++++. ++. .......+.++. ..|++++|+..|++++...|... .++..+|.++...|++++|+.
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYY--LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9998763 221 122333333333 35679999999999988765433 389999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh---h-------HHhHHhhHHHHHHHHh
Q 022777 228 LLLDALNKDAKD------PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM---L-------VKRASSGDESFERALQ 289 (292)
Q Consensus 228 ~~~~al~~~p~~------~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~---~-------~~~~~~~~~~~~~~~~ 289 (292)
.|++++.+.|.. ..++.++|.++...|++ |..++++++++.|+.. . ...+....+++++|+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999987754 67788999999999998 9999999988755432 1 2334566677777776
Q ss_pred hc
Q 022777 290 SV 291 (292)
Q Consensus 290 ~~ 291 (292)
.|
T Consensus 365 ~~ 366 (411)
T 4a1s_A 365 YA 366 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 66
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=8e-20 Score=141.54 Aligned_cols=134 Identities=6% Similarity=-0.054 Sum_probs=82.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 142 NVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 142 ~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
+|.++...|++++|+..+++++..+|++....+..+.++.. .|++++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~--~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE--AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 45555666666666666666666666655444444443333 3456666666666666666666666667777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HH-HHHHHHHhhCCCChhHHhH
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TS-RYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~-~~~~~~~~~~P~~~~~~~~ 277 (292)
+++|+..|+++++++|+++++++++|.++...|++ +. .+++++++++|+||.+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 77777777776666776666666666666666654 33 3456666666766665544
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=1.5e-19 Score=140.05 Aligned_cols=142 Identities=10% Similarity=-0.008 Sum_probs=115.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccc
Q 022777 112 IAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGS 186 (292)
Q Consensus 112 ~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~ 186 (292)
.||.++...|++++|+..+.+ |.++..++.+|.+|...|++++|+..++++++++|++.......+.++.. .|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--EE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC
Confidence 367777777888888888776 34555677788888888888888888889999999988777666666554 45
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGL-LLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
++++|+..|+++++.+|+++.+++.+|.++.+.|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 699999999999999999999999999999999999887665 699999999999999888988888876
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1e-18 Score=142.54 Aligned_cols=161 Identities=6% Similarity=0.040 Sum_probs=93.5
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHH----------------HHHHHHhcCCHHHHHHHhhc-----C
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLI----------------AGIIFMHEEDYNEALKHTNA-----G 133 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~-----~ 133 (292)
...|..+...|++++|+..|++++.. +|+++.+++. +|.++...|++++|+..|++ |
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33444444455555555555555555 5555555555 66666666666666666665 5
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKA 213 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 213 (292)
+++.++..+|.++...|++++|+..|+++++++|++.......+.++...+......+...|++++...| ...+++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 6666666666666666666666666666666666666555544444443333345555555655543222 122455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
.++...|++++|+..|+++++++|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666666666665
No 69
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=4.4e-18 Score=140.38 Aligned_cols=166 Identities=9% Similarity=0.090 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCc---hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH---HHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGT---MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL---TQLAN 176 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~---~~l~~ 176 (292)
..++.+|..++..|++++|+..|++ |.+ ++++..+|.++...|++++|+..++++++.+|++.. ..+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444445555555555555555444 222 234444455555555555555555555555444421 11111
Q ss_pred HHHHHH----------------hccccHHHHHHHHHHhHhhCCCCHHHH-----------------HHHHHHHHhcCCHH
Q 022777 177 AWLNLA----------------VGGSKIQEAYLIFQDFSEKYPMTGLIL-----------------NGKAVCCMHMGNFD 223 (292)
Q Consensus 177 a~~~l~----------------~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~la~~~~~~g~~~ 223 (292)
+.++.. ...|++++|+..|+++++.+|+++.+. ..+|.++...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 111111 123456666666766666666665433 57899999999999
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 224 EAEGLLLDALNKDAKDP---ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
+|+..|+++++..|+++ ++++.+|.++...|++ |.+.++++....|++..
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999987 6799999999999998 99999999998888753
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=3.4e-18 Score=134.73 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=140.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
...+..++.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..+++ |.++.++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445566777777677888888888887777 788888888888888888888888888876 6777888888888
Q ss_pred HHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 022777 146 FLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 146 ~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 225 (292)
+...|++++|...++++++..|++.......+.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN--LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH--cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999887666666655544 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHH
Q 022777 226 EGLLLDALNKDAKDPE 241 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~ 241 (292)
+..+++++..+|+++.
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999999988754
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2e-18 Score=147.55 Aligned_cols=236 Identities=13% Similarity=0.058 Sum_probs=169.2
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-C---------Cc-hHHHHHHHHHhhcCCCChhHHHHHHHHHhcC
Q 022777 32 TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-A---------AT-PLQAVKLLALYLSSPDNKESTISSLKEWLSD 100 (292)
Q Consensus 32 ~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~---------~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 100 (292)
-..+|. ...++..++.++...|++++|+..++++ . ++ ...++..++.++...|++++|+..+++++..
T Consensus 20 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 20 GYEIPA-RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp CTTSCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334565 6788899999999999999999988865 1 22 2556788899888889999999999998854
Q ss_pred ------CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------C---CchhHHHHHHHHHHhCCChHHHHHHHHH
Q 022777 101 ------PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------G---GTMELHALNVQIFLKMHRSDYAERQLRA 161 (292)
Q Consensus 101 ------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~ 161 (292)
+..|....++..+|.++...|++++|+..+++ + ....++..+|.++...|++++|+..+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21466788899999999999999999999886 1 1234577889999999999999999999
Q ss_pred HHhh--------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC---------------CHHHHHHHHHHHHh
Q 022777 162 MQQI--------DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM---------------TGLILNGKAVCCMH 218 (292)
Q Consensus 162 ~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~la~~~~~ 218 (292)
+++. +|.........+.++.. .|++++|+..|++++...|+ ....+...+.....
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 9887 44444444444444443 45699999999998865332 22344445555666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 219 MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
.+.+.+|...+++++...|.++.++.++|.++...|++ |.+++++++++.|+
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 77777788888888888899999999999999999998 99999999888775
No 72
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=3.9e-18 Score=135.28 Aligned_cols=162 Identities=13% Similarity=0.035 Sum_probs=133.4
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
+|...+.++.+|..+...|++++|+..|++ |+++.++..+|.++...|++++|+..+++++..+| +.......+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 455566788899999999999999999987 78899999999999999999999999999999988 654333333
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCC
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD--PETLANLVVCSLHQGK 255 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 255 (292)
.+.+.. .+...+|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ +.++.+++.++...|+
T Consensus 81 ~~~~~~-~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQ-QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHH-HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHh-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 332221 1223458999999999999999999999999999999999999999999999986 5699999999999998
Q ss_pred c--HHHHHHHHHh
Q 022777 256 S--TSRYLNQLKL 266 (292)
Q Consensus 256 ~--a~~~~~~~~~ 266 (292)
. +...+++++.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7 8888877653
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=4.4e-18 Score=138.80 Aligned_cols=166 Identities=9% Similarity=-0.074 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHH----------------HHHHHHhCCChHHHHHHHHHHHh
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHAL----------------NVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~----------------~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
+++.++..|..++..|++++|+..|++ |++++++.. +|.++...|++++|+..++++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788999999999999999999998 677888888 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHH
Q 022777 165 IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN--FDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 165 ~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~ 242 (292)
.+|++....+..+.++... |++++|+..|+++++.+|+++.+++.+|.++...|+ .+.+...+++++...|. ..+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCR--GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHH
T ss_pred HCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHH
Confidence 9999987777777666544 569999999999999999999999999999987764 45677888887643332 246
Q ss_pred HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhH
Q 022777 243 LANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 243 ~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~ 274 (292)
++++|.++...|++ |+..++++++++|++...
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 78899999889998 999999999999986543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.9e-18 Score=145.09 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=167.4
Q ss_pred hhhhhhccHHHHHhhc-cCCC--------CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--C--------Cc-hHHH
Q 022777 14 RNNFYLGAYQAAINNS-DLTN--------LPPDDAVERDCLVYRSYIALGSYQLVISEIDES--A--------AT-PLQA 73 (292)
Q Consensus 14 ~~~~~~g~~~~Ai~~~-~~~~--------~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~--------~~-~~~a 73 (292)
..++..|++++|+... ++++ ..|. ...++..+|.++...|++++|+..++++ . ++ ...+
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3667799999999994 4444 2444 6788899999999999999999999876 1 23 3667
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CCc--
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSD------PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GGT-- 135 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~-- 135 (292)
+..++.++...|++++|+..+++++.. +..|....++..+|.++...|++++|+.++++ +++
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 889999999999999999999999864 11367788999999999999999999999987 112
Q ss_pred -hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---------HHHHHHH-HHHH---HHhccccHHHHHHHHHHhHhh
Q 022777 136 -MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---------TLTQLAN-AWLN---LAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 136 -~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---------~~~~l~~-a~~~---l~~~~~~~~~A~~~~~~~~~~ 201 (292)
..++..++.++...|++++|+..++++++..|.. ....... .+.. .....+.+.+|...+.++...
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 3467788999999999999999999999863321 1111111 1111 111235577788889998889
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
.|..+.++..+|.++...|++++|+..|++++++.|+
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998875
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.6e-17 Score=153.97 Aligned_cols=212 Identities=10% Similarity=0.018 Sum_probs=183.0
Q ss_pred HHHHhhhhc---CCchHHHHHHHHHhhcC-------CCChh-------HHHHHHHHHhc-CCCCCccHHHHHHHHHHHHh
Q 022777 58 LVISEIDES---AATPLQAVKLLALYLSS-------PDNKE-------STISSLKEWLS-DPAIGSNATLRLIAGIIFMH 119 (292)
Q Consensus 58 ~Al~~~~~a---~~~~~~a~~~la~~~~~-------~~~~~-------~A~~~~~~~l~-~~~~p~~~~~~~~la~~~~~ 119 (292)
.++..++++ .|.+...|..++.++.. .|+.+ +|+..|++++. . .|+++.++..+|.++..
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHh
Confidence 566778877 67778899999988774 68877 89999999997 6 79999999999999999
Q ss_pred cCCHHHHHHHhhc-----CCch-hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTM-ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYL 193 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~-~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~ 193 (292)
.|++++|...|++ |.++ .++..++.++.+.|++++|+..|+++++..|.+....+..+++... ..|++++|+.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHH
Confidence 9999999999998 4554 5888899999999999999999999999988876555555544322 2467999999
Q ss_pred HHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 194 IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE----TLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 194 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
+|+++++.+|+++.++..++.++...|+.++|...|++++...|.+++ +|..++......|+. +.++.+++.+.
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877665 787888887888987 88899999999
Q ss_pred CCCCh
Q 022777 268 HPDHM 272 (292)
Q Consensus 268 ~P~~~ 272 (292)
.|+++
T Consensus 493 ~p~~~ 497 (530)
T 2ooe_A 493 FREEY 497 (530)
T ss_dssp THHHH
T ss_pred Cchhc
Confidence 99654
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.6e-18 Score=162.46 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=161.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-------------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-------------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
+|+++.+++..| ...|++++|+..+++ |++.+++..+|.++..+|++++|+..++++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 788888888777 789999999998864 5678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 170 TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
.......+.+++.. |++++|+..|+++++.+|+++.+++++|.++...|++++ +..|+++++++|+++.+++++|.+
T Consensus 467 ~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 467 WRLVWYRAVAELLT--GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 87777777666554 569999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHhcCCc--HHHHHHHHHhhCCCChhHHhH----Hhh--------HHHHHHHHhhc
Q 022777 250 SLHQGKS--TSRYLNQLKLTHPDHMLVKRA----SSG--------DESFERALQSV 291 (292)
Q Consensus 250 ~~~~g~~--a~~~~~~~~~~~P~~~~~~~~----~~~--------~~~~~~~~~~~ 291 (292)
+...|++ |...++++++++|+++.+... ... .++|++|+..+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 9999998 999999999999999865432 111 36788777643
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=2.8e-17 Score=145.17 Aligned_cols=265 Identities=11% Similarity=0.000 Sum_probs=194.3
Q ss_pred hhhhhhhccHHHHHhhc-cCCCCCCch----HHHHHHHHHHHHHhhCChhHHHHhhhhc------C-Cch--HHHHHHHH
Q 022777 13 LRNNFYLGAYQAAINNS-DLTNLPPDD----AVERDCLVYRSYIALGSYQLVISEIDES------A-ATP--LQAVKLLA 78 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~~-~~~~~~p~~----~~~a~~~la~~~~~~g~~~~Al~~~~~a------~-~~~--~~a~~~la 78 (292)
...++..|++++|+... +.+...|.+ ...++..++.++...|++++|+..++++ . .+. ..++..++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33567789999999983 333333332 1235677889999999999999999876 1 121 23466788
Q ss_pred HhhcCCCChhHHHHHHHHHhcC----CC--CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CC-----chhHHHHH
Q 022777 79 LYLSSPDNKESTISSLKEWLSD----PA--IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GG-----TMELHALN 142 (292)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~l~~----~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~-----~~~~~~~~ 142 (292)
.++...|++++|+..+++++.. +. .|.....+..+|.++...|++++|+..+++ +. ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 8888899999999999998864 10 144567788899999999999999999987 11 23467788
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhC--CCcHHHHHH---HHHHHHHhccccHHHHHHHHHHhHhhCCCC----HHHHHHHH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQID--EDHTLTQLA---NAWLNLAVGGSKIQEAYLIFQDFSEKYPMT----GLILNGKA 213 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~--p~~~~~~l~---~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la 213 (292)
+.++...|++++|...+++++... +........ .+...+....|++++|...+++++...|.+ ...+..+|
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 999999999999999999998763 222111111 122222234577999999999998776543 33578899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAK------DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.++...|++++|...+++++...+. ...++..++.++...|++ |...++++....+....+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 332 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 332 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999887443 124677889999999998 888998888766543333333
No 78
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=3.6e-17 Score=140.16 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=143.2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
.|++...++.+|..+...|++++|+..|++ |++++++..+|.++...|++++|+..+++++..+|++....+..+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 488899999999999999999999999997 899999999999999999999999999999999997654433333
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCC
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD--PETLANLVVCSLHQGK 255 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 255 (292)
.... ..++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ +.++.+++.++...|+
T Consensus 193 ~~l~--~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELL--XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHH--HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHH--hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2222 23558889999999999999999999999999999999999999999999999999 8899999999999998
Q ss_pred c--HHHHHHHHHh
Q 022777 256 S--TSRYLNQLKL 266 (292)
Q Consensus 256 ~--a~~~~~~~~~ 266 (292)
. +...+++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 6 7777766653
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=3e-17 Score=135.39 Aligned_cols=186 Identities=9% Similarity=-0.028 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCch---HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH---HH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATP---LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT---LR 110 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~---~~ 110 (292)
++.++.+|..++..|++++|+..++++ .|.+ ..++..+|.++...|++++|+..|++++.. .|+++. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 456788999999999999999999876 3322 468889999999899999999999999987 787654 78
Q ss_pred HHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHH-----------------
Q 022777 111 LIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQ----------------- 173 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~----------------- 173 (292)
+.+|.++...|.. ....+..++..+...|++++|+..|+++++..|++....
T Consensus 82 ~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp HHHHHHHHHHHC-------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 8999998876632 112234456667778899999999999999999885322
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 174 LANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG---LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 174 l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
+..+.+++ ..|++++|+..|+++++.+|+++ .++..+|.++.++|++++|+..++++....|++.
T Consensus 151 ~~~a~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 151 YSVAEYYT--ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHH--HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12232333 35679999999999999999987 6899999999999999999999999999999864
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.76 E-value=2.7e-17 Score=146.00 Aligned_cols=224 Identities=7% Similarity=-0.105 Sum_probs=176.6
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc------CCc---hHHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CC-CCccHH
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES------AAT---PLQAVKLLALYLSSPDNKESTISSLKEWLSD----PA-IGSNAT 108 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a------~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~-~p~~~~ 108 (292)
++++|..+...|++++|+..++++ .++ ...++..+|.++...|++++|+..+++++.. +. .|....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344899999999999999999876 122 2567889999999999999999999998864 00 233456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhh-----C-CCcHH
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA-----G--GT----MELHALNVQIFLKMHRSDYAERQLRAMQQI-----D-EDHTL 171 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~-----~--~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-----~-p~~~~ 171 (292)
.+..+|.++...|++++|+..+++ + ++ ..++..+|.+|..+|++++|+..+++++++ + |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 889999999999999999999987 1 21 136778999999999999999999999994 4 55544
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhC-----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKY-----PMTGLILNGKAVCCMHMGN---FDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.....+.++.. .|++++|...+++++... |.....+..+|.++...|+ +.+|+..+++. ...|....++
T Consensus 266 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 44555555544 467999999999988763 3333446779999999999 88888888876 4445556678
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHhhCC
Q 022777 244 ANLVVCSLHQGKS--TSRYLNQLKLTHP 269 (292)
Q Consensus 244 ~~l~~~~~~~g~~--a~~~~~~~~~~~P 269 (292)
..+|.++...|++ |..+++++.++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999998 9999999887643
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=2.3e-17 Score=146.47 Aligned_cols=273 Identities=12% Similarity=0.031 Sum_probs=190.5
Q ss_pred hhhhhhhccHHHHHhh-ccCC----CCCCchHHHHHHH--HHHHHHhhCChhHHH-----------Hhhhhc--CCchHH
Q 022777 13 LRNNFYLGAYQAAINN-SDLT----NLPPDDAVERDCL--VYRSYIALGSYQLVI-----------SEIDES--AATPLQ 72 (292)
Q Consensus 13 ~~~~~~~g~~~~Ai~~-~~~~----~~~p~~~~~a~~~--la~~~~~~g~~~~Al-----------~~~~~a--~~~~~~ 72 (292)
.-.+..++++++|... .++. ...++...-.++. ..+..+..+.++.+. ..+++. .++...
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~ 98 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT 98 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence 3456778999999987 3332 2223322332222 234445555555554 445444 233333
Q ss_pred HHH------HHHHhhcCCCChhHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc--------CC
Q 022777 73 AVK------LLALYLSSPDNKESTISSLKEWLSD----PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA--------GG 134 (292)
Q Consensus 73 a~~------~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~ 134 (292)
.+. ..|.++...|++++|+..+++++.. +..+....++..+|.++...|++++|+..+.+ ++
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 333 3788888889999999999999864 11233678999999999999999999999987 11
Q ss_pred ----chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCC---CcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHh----
Q 022777 135 ----TMELHALNVQIFLKMHRSDYAERQLRAMQQIDE---DHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSE---- 200 (292)
Q Consensus 135 ----~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p---~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~---- 200 (292)
...++..+|.+|...|++++|+..++++++..| ++. ......++++. ..|++++|+..|++++.
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHh
Confidence 123677899999999999999999999998743 221 12223333333 35679999999999988
Q ss_pred -hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhcCCc-----HHHHHHHHHhhC
Q 022777 201 -KY-PMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD-----AKDPETLANLVVCSLHQGKS-----TSRYLNQLKLTH 268 (292)
Q Consensus 201 -~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~-----a~~~~~~~~~~~ 268 (292)
.. |..+.+++.+|.++...|++++|+..+++++.+. |.....+..++.++...|+. +..++++.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---- 332 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---- 332 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----
Confidence 56 7788999999999999999999999999999883 33333456688888888873 55555544
Q ss_pred CCChh-------HHhHHhhHHHHHHHHhhc
Q 022777 269 PDHML-------VKRASSGDESFERALQSV 291 (292)
Q Consensus 269 P~~~~-------~~~~~~~~~~~~~~~~~~ 291 (292)
+..+. ...+....++|++|+..|
T Consensus 333 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333 334566778888887655
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=5.6e-16 Score=143.60 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=157.6
Q ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh-------cCCHH-------HHHHHhhc------CCchhHHHHHHHHHH
Q 022777 88 ESTISSLKEWLSDPAIGSNATLRLIAGIIFMH-------EEDYN-------EALKHTNA------GGTMELHALNVQIFL 147 (292)
Q Consensus 88 ~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~------~~~~~~~~~~a~~~~ 147 (292)
+.++..|++++.. .|.++.+++.+|..+.. .|+++ +|+.+|++ |++..++..++.++.
T Consensus 255 ~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4778899999998 89999999999999986 79987 89999886 567889999999999
Q ss_pred hCCChHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH-HhcCCHHHH
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHT-LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC-MHMGNFDEA 225 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~~~~A 225 (292)
..|++++|...|+++++.+|.+. ..++..+.+ ....|++++|+.+|+++++..|.+...+...+.+. ...|++++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF--ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHH--HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999999999874 344443333 23346799999999999999998888777776663 469999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 226 EGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 226 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
...|+++++..|+++.+|.+++.++...|+. |..++++++...|.+|.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999999999988 99999999999888774
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=1.1e-17 Score=143.63 Aligned_cols=206 Identities=11% Similarity=0.000 Sum_probs=140.9
Q ss_pred ChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCCHHHHHHHh
Q 022777 55 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSD----PAIGSNATLRLIAGIIFMHEEDYNEALKHT 130 (292)
Q Consensus 55 ~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 130 (292)
++++|+..++++ +.++...|++++|+..|++++.. +..+....++..+|.+|...|++++|+.+|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666666544 34455567888888888777653 101223577888888888889999888888
Q ss_pred hc-----C--Cc----hhHHHHHHHHHHhC-CChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhccccHHHHH
Q 022777 131 NA-----G--GT----MELHALNVQIFLKM-HRSDYAERQLRAMQQIDEDH------TLTQLANAWLNLAVGGSKIQEAY 192 (292)
Q Consensus 131 ~~-----~--~~----~~~~~~~a~~~~~~-~~~~~A~~~l~~~~~~~p~~------~~~~l~~a~~~l~~~~~~~~~A~ 192 (292)
++ + ++ ..++..+|.+|... |++++|+..|++++++.|.. .......+.++. ..|++++|+
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~ 178 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA--LDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HhCCHHHHH
Confidence 87 1 22 34677889999996 99999999999999986643 111222233333 356799999
Q ss_pred HHHHHhHhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHh--cCCc--
Q 022777 193 LIFQDFSEKYPMTGL-------ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET-----LANLVVCSLH--QGKS-- 256 (292)
Q Consensus 193 ~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~--~g~~-- 256 (292)
..|++++...|+++. +++++|.++..+|++++|+..|++++.++|+.+.. +..++..+.. .+++
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999998887653 67899999999999999999999999999987764 3344554432 2333
Q ss_pred HHHHHHHHHhhCCCChh
Q 022777 257 TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~~ 273 (292)
+.+.++++..++|.+..
T Consensus 259 A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 259 HCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHTTSSCCCHHHHH
T ss_pred HHHHhccCCccHHHHHH
Confidence 67777776666665543
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=5.6e-17 Score=121.73 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=80.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
|+..+++..+|..+++.|++++|+..|+++++.+|++.......+.++... |++++|+..|+++++.+|+++.+++.+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 334455566667777777777777777777777777765555555544433 457777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
|.++..+|++++|+..|+++++++|++++++.+++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777777777777777777655
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=6.4e-18 Score=131.01 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=91.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
..++++++++|++....+..+..+.. .|++++|+..|++++..+|+++.+|+++|.++...|++++|+..|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYN--KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 44566667778777666665655443 4568888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
|+++.+++++|.++...|++ |.+.+++++++.|+++.
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 88888888888888888887 88888888888888774
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=1.2e-16 Score=136.96 Aligned_cols=170 Identities=11% Similarity=-0.012 Sum_probs=149.2
Q ss_pred HhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc
Q 022777 61 SEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT 135 (292)
Q Consensus 61 ~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~ 135 (292)
..++...|.+...+..+|..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..+++ |+.
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence 3444446777888899999988899999999999999998 999999999999999999999999999998 444
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC--HHHHHHHH
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT--GLILNGKA 213 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la 213 (292)
.......+..+...++.++|+..++++++.+|++....+.++.++.. .|++++|+..|++++..+|++ +.++..+|
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~--~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ--VGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 44455556668888999999999999999999998877777766554 467999999999999999998 88999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~ 234 (292)
.++...|+.++|...|++++.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999885
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=7.4e-17 Score=135.55 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=63.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHhhc----------C---CchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-----
Q 022777 104 GSNATLRLIAGIIFMHEEDYNEALKHTNA----------G---GTMELHALNVQIFLKMHRSDYAERQLRAMQQI----- 165 (292)
Q Consensus 104 p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~---~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~----- 165 (292)
|..+.++..+|.++...|++++|+..+++ + ....++..+|.++...|++++|+..++++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555555555555544 0 11223445555555555555555555555554
Q ss_pred ---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 166 ---DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK--------YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 166 ---~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
+|.........+.++. ..|++++|+..|++++.. .|..+.++..+|.++...|++++|+..|++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQ--NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222222222222222 234455555555555554 344445555555555555555555555555555
Q ss_pred h
Q 022777 235 K 235 (292)
Q Consensus 235 ~ 235 (292)
+
T Consensus 198 ~ 198 (283)
T 3edt_B 198 R 198 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=5.3e-17 Score=128.64 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQI 145 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~ 145 (292)
...+..++..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..+++ | ++.....++.+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 344566777777788999999999998887 899999999999999999999999999987 4 55555555544
Q ss_pred HH-hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC--HHHHHHHHHHHHhcCCH
Q 022777 146 FL-KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT--GLILNGKAVCCMHMGNF 222 (292)
Q Consensus 146 ~~-~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~ 222 (292)
.. ..++..+|+..++++++.+|++....+.++.++.. .|++++|+..|+++++.+|+. +.++..+|.++...|++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ--VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 22 33344568999999999999998777776666554 467999999999999999875 66999999999999999
Q ss_pred HHHHHHHHHHHh
Q 022777 223 DEAEGLLLDALN 234 (292)
Q Consensus 223 ~~A~~~~~~al~ 234 (292)
++|+..|++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999999875
No 89
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=3.6e-17 Score=148.98 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH----hhc--CCchhHHHHHHHHHHhCC---ChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 107 ATLRLIAGIIFMHEEDYNEALKH----TNA--GGTMELHALNVQIFLKMH---RSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 107 ~~~~~~la~~~~~~g~~~~A~~~----~~~--~~~~~~~~~~a~~~~~~~---~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
+.+.+.+|.+|...+.+++++.. +.. ..++.+...+|.+|...| ++++|+..|+++.+..|........++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444455555554433322222 222 345556677777777777 777777777777777666654222222
Q ss_pred HHHHH--hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 178 WLNLA--VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC-C--MHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 178 ~~~l~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
.++.. ...+++++|+..|+++. |.++.+++.+|.+ + ...+++++|+..|+++.+ ++++.+++++|.+|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-
Confidence 22211 01145777777777765 6667777777776 3 456777777777777664 346777777777665
Q ss_pred cC-----Cc--HHHHHHHHHhhCCCChh
Q 022777 253 QG-----KS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 253 ~g-----~~--a~~~~~~~~~~~P~~~~ 273 (292)
.| ++ |.++++++. |.++.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 33 33 666666665 66654
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=1.6e-16 Score=119.24 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=100.3
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 162 MQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 162 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
+..++|+........+..++. .|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFK--KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 445677765444444544443 567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 242 TLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 242 ~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
+++++|.++...|++ |.+.++++++++|+++.+..-+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999998 9999999999999999877644
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=5.9e-17 Score=136.15 Aligned_cols=215 Identities=11% Similarity=0.021 Sum_probs=155.2
Q ss_pred cHHHHHhhc-cCCCCC-CchHHHHHHHHHHHHHhhCChhHHHHhhhhc--C--------Cc-hHHHHHHHHHhhcCCCCh
Q 022777 21 AYQAAINNS-DLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDES--A--------AT-PLQAVKLLALYLSSPDNK 87 (292)
Q Consensus 21 ~~~~Ai~~~-~~~~~~-p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~--------~~-~~~a~~~la~~~~~~~~~ 87 (292)
.|++|++.. ++...+ |. ...++..+|.++...|++++|+..++++ . ++ ...++..++.++...|++
T Consensus 23 ~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 355555552 222223 54 6788999999999999999999999865 1 23 366788999999999999
Q ss_pred hHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CCc---hhHHHHHHHHHHh
Q 022777 88 ESTISSLKEWLSD------PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GGT---MELHALNVQIFLK 148 (292)
Q Consensus 88 ~~A~~~~~~~l~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~---~~~~~~~a~~~~~ 148 (292)
++|+..+++++.. ...|....++..+|.++...|++++|+.++++ +++ ..++..+|.++..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998864 11377889999999999999999999999987 113 3467788999999
Q ss_pred CCChHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHh----ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 149 MHRSDYAERQLRAMQQID---------EDHTLTQLANAWLNLAV----GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~---------p~~~~~~l~~a~~~l~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
+|++++|+..++++++.. +.........+...... ....+.++...++.+....|..+.++..+|.+
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL 261 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999862 22222222222222111 11346667777777666777888899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhC
Q 022777 216 CMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~ 236 (292)
+...|++++|+..|++++++.
T Consensus 262 ~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999998764
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=2.4e-16 Score=147.40 Aligned_cols=160 Identities=12% Similarity=0.008 Sum_probs=129.8
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQ 158 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~ 158 (292)
.|++++|+..+++++.. +|++..++..+|.++...|++++|+..|++ |++..++..+|.++..+|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999998 999999999999999999999999999987 78889999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 022777 159 LRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM---GNFDEAEGLLLDALNK 235 (292)
Q Consensus 159 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 235 (292)
++++++.+|++.......+.++.. .|++++|+..|+++++..|+++.++..+|.++... |++++|+..|+++++.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALED--AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999997666666665554 46799999999999999999999999999999999 9999999999999999
Q ss_pred CCCCHHHHHHHH
Q 022777 236 DAKDPETLANLV 247 (292)
Q Consensus 236 ~p~~~~~~~~l~ 247 (292)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988777666
No 93
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=8.6e-17 Score=124.13 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=103.6
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
..+++++..+|++....+..+..++. .|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45777888888887666665555444 4569999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHH
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFE 285 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 285 (292)
|+++.+++++|.++...|++ |.+.+++++++.|++|....+.......-
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 99999999999999999988 88999999999998887766554444433
No 94
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=4.9e-16 Score=137.79 Aligned_cols=223 Identities=8% Similarity=-0.028 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhc------CCc---hHHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CC-CCccH
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDES------AAT---PLQAVKLLALYLSSPDNKESTISSLKEWLSD----PA-IGSNA 107 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a------~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~-~p~~~ 107 (292)
.++++|..+...|++++|+..++++ .+. ...++..+|.++...|+++.|+..+++++.. +. .+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 4566788899999999999999876 121 2556778999988889999999999888753 00 12245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-------CCc----hhHHHHHHHHHHhCCChHHHHHHHHHHHh-----hCCCcHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-------GGT----MELHALNVQIFLKMHRSDYAERQLRAMQQ-----IDEDHTL 171 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-------~~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~-----~~p~~~~ 171 (292)
..+..+|.++...|++++|+..+++ .++ ..++..+|.+|..+|++++|+..++++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 6788999999999999999999887 122 23567889999999999999999999998 5666554
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhC-----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKY-----PMTGLILNGKAVCCMHMGN---FDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 243 (292)
.....+.++.. .|++++|+..+++++... |.....+..++.++...|+ +.+|+..+++ ....|....+.
T Consensus 263 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHH
Confidence 44555555444 466999999999988763 3344566778888888888 8888888877 23344455677
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 244 ANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 244 ~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
..+|.++...|++ |.++++++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999998 88888888754
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=4.7e-16 Score=137.92 Aligned_cols=221 Identities=12% Similarity=0.016 Sum_probs=168.1
Q ss_pred hhhhhccHHHHHhhc-cCCCC-----CCchHHHHHHHHHHHHHhhCChhHHHHhhhhc------CC--c--hHHHHHHHH
Q 022777 15 NNFYLGAYQAAINNS-DLTNL-----PPDDAVERDCLVYRSYIALGSYQLVISEIDES------AA--T--PLQAVKLLA 78 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~-~~~~~-----~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a------~~--~--~~~a~~~la 78 (292)
.++..|+|++|+... +.+.. ++.....+++.+|.+|..+|+++.|+..++++ .+ + ...++..+|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 456789999999983 33322 22235678888999999999999999999876 11 1 245677899
Q ss_pred HhhcCCCChhHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc----------CCchhHHHHHHH
Q 022777 79 LYLSSPDNKESTISSLKEWLSD----PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA----------GGTMELHALNVQ 144 (292)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~~~~~~~a~ 144 (292)
.++...|++++|+..+++++.. +..+....++..+|.++...|++++|+.++++ |....+...+|.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 9999999999999999998863 10223456888999999999999999999987 334567889999
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhcccc---HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDED---HTLTQLANAWLNLAVGGSK---IQEAYLIFQDFSEKYPMTGLILNGKAVCCMH 218 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~---~~~~~l~~a~~~l~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 218 (292)
++...|++++|+..+++++++.+. ............++...++ +.+|+..+++. ...|+...++..+|.++..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999999999997432 1111111122233444455 88898888873 3344556788899999999
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 022777 219 MGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~ 236 (292)
.|++++|..+|+++++..
T Consensus 349 ~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=1.9e-16 Score=135.83 Aligned_cols=200 Identities=12% Similarity=0.022 Sum_probs=153.1
Q ss_pred HHHHHHhhCChhHHHHhhhhc-------CCc-h-HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc------cHHHH
Q 022777 46 VYRSYIALGSYQLVISEIDES-------AAT-P-LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS------NATLR 110 (292)
Q Consensus 46 la~~~~~~g~~~~Al~~~~~a-------~~~-~-~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~------~~~~~ 110 (292)
.+.+|..+|++++|+..++++ ..+ . ..++..++.++...|++++|+..|++++.. .|. ...++
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHH
Confidence 467888999999999999876 122 2 567889999999999999999999999875 443 25688
Q ss_pred HHHHHHHHhc-CCHHHHHHHhhc-----CC--c----hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHH-------
Q 022777 111 LIAGIIFMHE-EDYNEALKHTNA-----GG--T----MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTL------- 171 (292)
Q Consensus 111 ~~la~~~~~~-g~~~~A~~~~~~-----~~--~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~------- 171 (292)
..+|.+|... |++++|+..|++ +. + ..++..+|.++..+|++++|+..++++++..|++..
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999996 999999999998 21 1 356788999999999999999999999999887642
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH-----HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL-----ILNGKAVCCM--HMGNFDEAEGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~ 244 (292)
..+..+.+++ ..|++++|+..|++++...|+.+. .+..++..+. ..+++++|+..|++++.++|.+..++.
T Consensus 201 ~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 201 YFLKKGLCQL--AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 1222333333 346799999999999999988654 3445555554 567899999999999999998877665
Q ss_pred HHHHH
Q 022777 245 NLVVC 249 (292)
Q Consensus 245 ~l~~~ 249 (292)
.+-..
T Consensus 279 ~~k~~ 283 (292)
T 1qqe_A 279 KIKES 283 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=4e-15 Score=128.20 Aligned_cols=225 Identities=12% Similarity=0.004 Sum_probs=156.6
Q ss_pred HHHHHHhhCCh-hHHHHhhhhc---CCchHHHHHHHHHhhcCCC--ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHH--
Q 022777 46 VYRSYIALGSY-QLVISEIDES---AATPLQAVKLLALYLSSPD--NKESTISSLKEWLSDPAIGSNATLRLIAGIIF-- 117 (292)
Q Consensus 46 la~~~~~~g~~-~~Al~~~~~a---~~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~-- 117 (292)
..++.+..|.+ ++|+..+.++ +|.+..++..-+.++...+ ++++++..+..++.. +|++..++...+.++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHH
Confidence 34445555555 4677777665 6666777776676666666 777777777777777 788777777777777
Q ss_pred --Hhc---CCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q 022777 118 --MHE---EDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSD--YAERQLRAMQQIDEDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 118 --~~~---g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~--~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 185 (292)
... +++++++..+++ |.+..++..++.++...|.++ +++..++++++.+|.+...+...+++... .
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--K 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--S
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--c
Confidence 555 677777777776 677777777777777777777 77777777777777776555444443322 2
Q ss_pred cc------HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHhcCC
Q 022777 186 SK------IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE-AEGLLLDALNKD---AKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 186 ~~------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~ 255 (292)
++ ++++++.+++++..+|+|..+|+.++.++...|+..+ ......+++.++ |.++.++..++.++.+.|+
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 33 7777777777777778777777777777777777544 445666666655 7777777777777777776
Q ss_pred c--HHHHHHHHHh-hCCCChhH
Q 022777 256 S--TSRYLNQLKL-THPDHMLV 274 (292)
Q Consensus 256 ~--a~~~~~~~~~-~~P~~~~~ 274 (292)
. |.++++.+.+ .+|-+...
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHHhccChHHHHH
Confidence 6 7777777775 67766543
No 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=4.9e-16 Score=141.48 Aligned_cols=219 Identities=12% Similarity=-0.008 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhhCChhHHHHh----hhhcCCchHHHHHHHHHhhcCCC---ChhHHHHHHHHHhcCCCCCccHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISE----IDESAATPLQAVKLLALYLSSPD---NKESTISSLKEWLSDPAIGSNATLRLIA 113 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~----~~~a~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~p~~~~~~~~l 113 (292)
.+++.++.+|...+.+++++.. ++.+...++.++..|+.++...| +.++|+..|+++... .|.+...++.+
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g~~~a~~~~~L 219 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR--GTVTAQRVDSV 219 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 4455555555555554444433 22222233336667777766667 777777777777776 56666666777
Q ss_pred HHHHHhc----CCHHHHHHHhhc--CCchhHHHHHHHH-H--HhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 022777 114 GIIFMHE----EDYNEALKHTNA--GGTMELHALNVQI-F--LKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG 184 (292)
Q Consensus 114 a~~~~~~----g~~~~A~~~~~~--~~~~~~~~~~a~~-~--~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~ 184 (292)
|.+|... +++++|+.+|++ ++++.+...+|.+ + ...+++++|+..|+++.+.. +......++.++. .+
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HC
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cC
Confidence 7777655 677777777776 5677777777777 3 45677777888777777554 3333333333333 22
Q ss_pred ---cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-C--
Q 022777 185 ---GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ-G-- 254 (292)
Q Consensus 185 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g-- 254 (292)
..++++|+..|+++. |.++.+++.+|.++.. ..++++|+..|+++.+ ++++++.+++|.+|..- |
T Consensus 297 ~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBC
T ss_pred CCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCC
Confidence 126777888887776 6777777788877776 3477778888877765 55667777777777531 1
Q ss_pred -Cc--HHHHHHHHHhhCC
Q 022777 255 -KS--TSRYLNQLKLTHP 269 (292)
Q Consensus 255 -~~--a~~~~~~~~~~~P 269 (292)
++ |..+++++.+..+
T Consensus 372 ~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 22 6777777765543
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=1.6e-15 Score=141.67 Aligned_cols=153 Identities=13% Similarity=0.003 Sum_probs=128.4
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLI 194 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~ 194 (292)
.|++++|+..|++ |.+..++..+|.++...|++++|+..++++++.+|++......++.++.. .|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT--QQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 4789999999987 68889999999999999999999999999999999998777666666554 4679999999
Q ss_pred HHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCc--HHHHHHHHHhhCC
Q 022777 195 FQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ---GKS--TSRYLNQLKLTHP 269 (292)
Q Consensus 195 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~--a~~~~~~~~~~~P 269 (292)
|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.++... |+. |.+.++++++.+|
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 777 9999999999999
Q ss_pred CChhH
Q 022777 270 DHMLV 274 (292)
Q Consensus 270 ~~~~~ 274 (292)
++...
T Consensus 160 ~~~~~ 164 (568)
T 2vsy_A 160 GAVEP 164 (568)
T ss_dssp CCSCH
T ss_pred cccCh
Confidence 87543
No 100
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=4e-16 Score=119.18 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=100.1
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 157 RQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 157 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
..|++++..+|++....+..+..++. .|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQ--AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45667777788776666655555444 4569999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHH
Q 022777 237 AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESF 284 (292)
Q Consensus 237 p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~ 284 (292)
|+++.+++++|.++...|++ |.+.++++++++|++|....+.......
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 99999999999999999988 8899999999999888766654444433
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=3e-14 Score=122.72 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=160.8
Q ss_pred hcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC--CHHHHHHHhhc-----CCchhHHHHHHHHH----HhC
Q 022777 81 LSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE--DYNEALKHTNA-----GGTMELHALNVQIF----LKM 149 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~-----~~~~~~~~~~a~~~----~~~ 149 (292)
....+..++|+..+.+++.. +|++..++...+.++...| ++++++..++. |.+..++..++.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33334457888888888888 8999999999999888888 89999988886 78888888887777 666
Q ss_pred ---CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHH--HHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC---
Q 022777 150 ---HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQ--EAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN--- 221 (292)
Q Consensus 150 ---~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--- 221 (292)
+++++++..+.++++.+|.+...+....|+.-.. ++++ +++..+.++++.+|.|..+|..++.++...|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l--~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF--DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 7888999999999999998887777766665443 3466 88888999999999998899999999888887
Q ss_pred ---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc---HHHHHHHHHhhC---CCChhHHhH----HhhHHHHHHHH
Q 022777 222 ---FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS---TSRYLNQLKLTH---PDHMLVKRA----SSGDESFERAL 288 (292)
Q Consensus 222 ---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---a~~~~~~~~~~~---P~~~~~~~~----~~~~~~~~~~~ 288 (292)
+++++..+.+++..+|+|..+|..++.++...|+. ...+..++..++ |.++.+..+ ....++.++|+
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 88899999999999999999998888888888875 556777776665 777765443 33334555555
Q ss_pred h
Q 022777 289 Q 289 (292)
Q Consensus 289 ~ 289 (292)
+
T Consensus 279 ~ 279 (306)
T 3dra_A 279 T 279 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.66 E-value=6.7e-15 Score=120.28 Aligned_cols=171 Identities=10% Similarity=0.000 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc---CCchhHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 022777 90 TISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA---GGTMELHALNVQIFLKMH----RSDYAERQLRAM 162 (292)
Q Consensus 90 A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~~~~a~~~~~~~----~~~~A~~~l~~~ 162 (292)
|+..|+++.+ .+++.+++.+|.+|...|++++|+.+|++ ..++.+...+|.+|.. + ++++|+..|+++
T Consensus 5 A~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555555543 34566666666666666666666666665 4556666666666655 4 666666666666
Q ss_pred HhhCCCcHHHHHHHHHHHHH-hc-cccHHHHHHHHHHhHhhCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 022777 163 QQIDEDHTLTQLANAWLNLA-VG-GSKIQEAYLIFQDFSEKYP--MTGLILNGKAVCCMH----MGNFDEAEGLLLDALN 234 (292)
Q Consensus 163 ~~~~p~~~~~~l~~a~~~l~-~~-~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 234 (292)
.+. ++......++.++.. .+ .+++++|+..|+++++..| +++.+++.+|.++.. .+++++|+..|+++++
T Consensus 80 ~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 443 233222333322221 00 3456666666666666655 236666666666666 6666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHhc-C-----Cc--HHHHHHHHHhhC
Q 022777 235 KDAKDPETLANLVVCSLHQ-G-----KS--TSRYLNQLKLTH 268 (292)
Q Consensus 235 ~~p~~~~~~~~l~~~~~~~-g-----~~--a~~~~~~~~~~~ 268 (292)
+ |+++.+++++|.+|..- | ++ |..+++++.+..
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6 55566666666666532 2 22 666666665543
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=1.5e-14 Score=107.31 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
+++..++.++...|++++|+..++++++.+|++.......+.++.. .|++++|...+++++...|.++.++..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 3566777888888888888888888888888776554444444433 35688888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCC
Q 022777 217 MHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~ 271 (292)
...|++++|+..+++++...|+++.+++.++.++...|++ |.++++++.+.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8888888888888888888888888888888888888887 888888888887763
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=9e-16 Score=118.83 Aligned_cols=129 Identities=9% Similarity=-0.073 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 187 (292)
.+...+..++...+-+.+++.. .|+++++++.+|.++...|++++|+..|++++..+|++...+..++.++.. .|+
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~ 85 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI--PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI--KEQ 85 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHCCCCHHHHhCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--Hcc
Confidence 3445555555544444444331 167888999999999999999999999999999999998777777766554 467
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
+++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++++.|+++
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999876
No 105
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1e-15 Score=129.53 Aligned_cols=196 Identities=13% Similarity=-0.004 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHH-------HHhhcCCCChhHHHHHHHHHhcCCCCCccH-----
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLL-------ALYLSSPDNKESTISSLKEWLSDPAIGSNA----- 107 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~p~~~----- 107 (292)
++..|..+ .-+++..|+..|.++ +|....+|..+ +.++...++..+++..+++.+.. .|+..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~ 86 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIA 86 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEE
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--Chhhhhhhhc
Confidence 44455554 456666666666655 55566666655 44444444555666666666654 34322
Q ss_pred ----------------HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 108 ----------------TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 108 ----------------~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
++...+|.++...|++++|.+.|+. |+++ +.+.++.++.+.|++++|+..|+++....
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 2333456666666666666666655 3333 55666666666666666666666554432
Q ss_pred CCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 167 EDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY--PM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 167 p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
++. ...+.++.+. ...|++++|+..|++++... |. .+++++.+|.++.++|+.++|...|++++..+|+ +
T Consensus 166 -d~~~~~~a~~~LG~al--~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~ 241 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAA--ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-P 241 (282)
T ss_dssp -CHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-H
T ss_pred -CcccHHHHHHHHHHHH--HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-H
Confidence 111 0112222111 12345666666666665432 43 4556666666666666666666666666666666 5
Q ss_pred HHHHHH
Q 022777 241 ETLANL 246 (292)
Q Consensus 241 ~~~~~l 246 (292)
.+...|
T Consensus 242 ~~~~aL 247 (282)
T 4f3v_A 242 KVAAAL 247 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=1.1e-14 Score=118.94 Aligned_cols=185 Identities=12% Similarity=-0.012 Sum_probs=153.6
Q ss_pred hHHHHhhhhc-CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC----CHHHHHHHhh
Q 022777 57 QLVISEIDES-AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE----DYNEALKHTN 131 (292)
Q Consensus 57 ~~Al~~~~~a-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 131 (292)
.+|+.+++++ ...++.++..|+.++...+++++|+..|++++. ++++.+++.+|.+|.. | ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA----QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678888887 667788999999999888999999999999975 4678999999999998 7 9999999999
Q ss_pred c---CCchhHHHHHHHHHHh----CCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHH-hc-cccHHHHHHHHHHhHh
Q 022777 132 A---GGTMELHALNVQIFLK----MHRSDYAERQLRAMQQIDED--HTLTQLANAWLNLA-VG-GSKIQEAYLIFQDFSE 200 (292)
Q Consensus 132 ~---~~~~~~~~~~a~~~~~----~~~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~~l~-~~-~~~~~~A~~~~~~~~~ 200 (292)
+ +.++.+...++.+|.. .+++++|+..|+++.+..|. ++.....++.++.. .+ .+++++|+..|+++++
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8 7899999999999998 89999999999999999883 24344444444443 11 3579999999999998
Q ss_pred hCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 201 KYPMTGLILNGKAVCCMHM-G-----NFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 201 ~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
. |.++.+++.+|.++... | ++++|+..|+++.+. +++++...++.+
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l 209 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRI 209 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHh
Confidence 8 67788999999999864 3 999999999999987 456666666543
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=1.1e-13 Score=137.08 Aligned_cols=249 Identities=11% Similarity=0.053 Sum_probs=172.2
Q ss_pred cCCCchh-hhhhhhhhccHHHHHhhcc-CCCCCCc-----hHHHHHHH-------------------------HHHHHHh
Q 022777 5 AAPDHLF-NLRNNFYLGAYQAAINNSD-LTNLPPD-----DAVERDCL-------------------------VYRSYIA 52 (292)
Q Consensus 5 ~~~~~~~-~~~~~~~~g~~~~Ai~~~~-~~~~~p~-----~~~~a~~~-------------------------la~~~~~ 52 (292)
-+||++. .++.+...|.+.+||+..+ +. ..|+ .+.+..+. +|.+++.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 4677877 4556677899999999944 33 2233 11222221 1556677
Q ss_pred hCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 53 LGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 53 ~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
.|.+++|...|+++... ..+ +..++...+++++|++.++++ +++.+|+.+|.++...|++++|+..|.+
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A---~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSA---VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHH---HHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 78888888888777321 112 122232456788887777653 4588999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc-HHHHHHHHHHH------------------------HHhcccc
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-TLTQLANAWLN------------------------LAVGGSK 187 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~------------------------l~~~~~~ 187 (292)
.+++..+..++.++.+.|++++|++.|..+.+..+++ ....++.++.. ...+.|+
T Consensus 1131 AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999988776553 11112211111 1123467
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------------------CCHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDA-------------------------KDPET 242 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~ 242 (292)
|++|..+|.++ ..|..+|.++.+.|++++|++.++++....+ .+++.
T Consensus 1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~de 1282 (1630)
T 1xi4_A 1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 1282 (1630)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHH
Confidence 88888888875 3677888888888888888888888744433 13444
Q ss_pred HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 243 LANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 243 ~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
+..++..|...|.+ ++.++++++.++|.|+.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 44556666677776 77777777777777764
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=2.6e-14 Score=125.98 Aligned_cols=249 Identities=10% Similarity=-0.001 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHhhhhc---CCch-----HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc--c--
Q 022777 39 AVERDCLVYRSYIALGSYQLVISEIDES---AATP-----LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS--N-- 106 (292)
Q Consensus 39 ~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~-----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~--~-- 106 (292)
..+++..++.++...|++++|+..++++ .++. ..++..++.++...|++++|+..+++++.. .|. +
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 90 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHhcCcHH
Confidence 3566777888999999999999999876 2222 124667788888789999999999998864 222 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHhhc--------CC-----chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc--
Q 022777 107 --ATLRLIAGIIFMHEEDYNEALKHTNA--------GG-----TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-- 169 (292)
Q Consensus 107 --~~~~~~la~~~~~~g~~~~A~~~~~~--------~~-----~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-- 169 (292)
...+..+|.++...|++++|+..+++ +. ...++..++.++...|++++|+..+++++...|..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 24467899999999999999999987 11 12345678999999999999999999999886642
Q ss_pred ---HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhC--CCC-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 170 ---TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY--PMT-GLILN----GKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 170 ---~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~--p~~-~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.......+.++. ..|++++|...+++++... +.. ..... .++.++...|++++|...+++++...|.+
T Consensus 171 ~~~~~~~~~la~~~~--~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSL--ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp GGGHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 122233333333 3467999999999987652 222 22221 35566889999999999999999887754
Q ss_pred ----HHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCh---hH-------HhHHhhHHHHHHHHhhc
Q 022777 240 ----PETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHM---LV-------KRASSGDESFERALQSV 291 (292)
Q Consensus 240 ----~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~---~~-------~~~~~~~~~~~~~~~~~ 291 (292)
...+.+++.++...|++ |...++++....+... .. .......+++++|...|
T Consensus 249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33567889999999998 8888888877644321 11 22244556677766543
No 109
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=5.8e-14 Score=138.89 Aligned_cols=250 Identities=10% Similarity=-0.006 Sum_probs=163.9
Q ss_pred hhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 022777 18 YLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEW 97 (292)
Q Consensus 18 ~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 97 (292)
..|++++|++.. .+.+ ...+++.+|+++...|++++|+..|.++ .+..++..++.++...|++++|++.|..+
T Consensus 1088 ~i~nldrAiE~A--ervn---~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1088 HIGNLDRAYEFA--ERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHhhHHHHHHHH--HhcC---CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888888872 2222 2467888999999999999999999887 44456677888888899999999999776
Q ss_pred hcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 98 LSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 98 l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
.+. .++ +.+...+|.+|.+.+++++ ++.|-++.+...+...|..+...|++++|...|.++- ....++..
T Consensus 1161 rk~--~~e-~~Idt~LafaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~t 1230 (1630)
T 1xi4_A 1161 RKK--ARE-SYVETELIFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLAST 1230 (1630)
T ss_pred Hhh--ccc-ccccHHHHHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHH
Confidence 655 322 2222235666666666664 3333333333444456666666666666666666641 22223322
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCC-------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYP-------------------------MTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
++ . .|++++|+++++++....+ .+++.+..++..|...|.|++|+..++++
T Consensus 1231 Lv--k--Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1231 LV--H--LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HH--H--hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 1 1346666666655533222 35566778899999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCc----HHHHHHHHHhhCC-----CCh--h--HHhHHhhHHHHHHHH
Q 022777 233 LNKDAKDPETLANLVVCSLHQGKS----TSRYLNQLKLTHP-----DHM--L--VKRASSGDESFERAL 288 (292)
Q Consensus 233 l~~~p~~~~~~~~l~~~~~~~g~~----a~~~~~~~~~~~P-----~~~--~--~~~~~~~~~~~~~~~ 288 (292)
+.++|.+...+..++.++.+.... +.++|..-..+.| +++ | ..-+...-++||+|+
T Consensus 1307 L~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1307 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999998876533 4455544333333 111 2 333466678888887
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=5.4e-15 Score=125.10 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=164.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHH-------HHHHHhcCCHHHHHHHhhc-----CCc------
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIA-------GIIFMHEEDYNEALKHTNA-----GGT------ 135 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~-----~~~------ 135 (292)
++..+.-+ ..++...|...|.+++.. +|+..++|..+ +.++...+++.+++..+++ |..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 34444444 478999999999999999 99999999999 8999999999999998876 111
Q ss_pred ---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 022777 136 ---------------MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 136 ---------------~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~ 200 (292)
.++...++.++...|++++|...|+.++...|++. ..+..+.+++ ..+++++|+..|+++..
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~--~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG--AAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH--HTTCHHHHHHHHTTGGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH--HcCCHHHHHHHHHHhhc
Confidence 34566788999999999999999999999999887 6666665544 45679999999998866
Q ss_pred hCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 201 KYPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNKD--AK-DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 201 ~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
..++ ...+++.+|.++..+|++++|+..|++++... |. .+++++++|.++..+|+. |...++++...+|+ +.
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 4322 13589999999999999999999999998654 66 678999999999999998 99999999999999 77
Q ss_pred HHhH
Q 022777 274 VKRA 277 (292)
Q Consensus 274 ~~~~ 277 (292)
+...
T Consensus 243 ~~~a 246 (282)
T 4f3v_A 243 VAAA 246 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=8.3e-17 Score=141.01 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=115.9
Q ss_pred hcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---------------HHHHHHHHH
Q 022777 119 HEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---------------TLTQLANAW 178 (292)
Q Consensus 119 ~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---------------~~~~l~~a~ 178 (292)
..+++++|+..+++ |....++..+|.++...|++++|+..|+++++++|++ ......++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655 3456677788888888888888888888888888876 344444454
Q ss_pred HHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--
Q 022777 179 LNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 179 ~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-- 256 (292)
+++. .|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.+++.++...|+.
T Consensus 205 ~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLK--LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444 466999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred H-HHHHHHHHh
Q 022777 257 T-SRYLNQLKL 266 (292)
Q Consensus 257 a-~~~~~~~~~ 266 (292)
+ .+.++++..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3 345555443
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=4.5e-14 Score=114.39 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=116.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc--CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA--GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 183 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 183 (292)
....++.+|.++...|++++|+..|++ +.++.++..+|.++...|++++|+..++++++.+|++.......+.++..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~- 83 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ- 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-
Confidence 345567888899999999999999988 45677888889999999999999999999999988887666665655544
Q ss_pred ccccHHHHHHHHHHhHhhCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTG----------------LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
.|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++++|++.......+
T Consensus 84 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 84 -TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 4569999999999988777766 99999999999999999999999999999998765544444
Q ss_pred H
Q 022777 248 V 248 (292)
Q Consensus 248 ~ 248 (292)
.
T Consensus 163 ~ 163 (213)
T 1hh8_A 163 M 163 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=8.3e-16 Score=131.26 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=142.7
Q ss_pred chHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHH
Q 022777 69 TPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNV 143 (292)
Q Consensus 69 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a 143 (292)
....++..+|..+...|++++|+..|++++.. .|+++.++..+|.++...|++++|+..+++ |+++.++..+|
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567778888888888999999999998887 898999999999999999999999999887 67888899999
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
.++..+|++++|+..++++++++|++........+..+. ..++...........|.++.+...++.++ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999999999998877652110011122221 22222222333356777777777777765 69999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-Cc--HHHHHHHHHhh
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQG-KS--TSRYLNQLKLT 267 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~--a~~~~~~~~~~ 267 (292)
+|++.++++++.+|++......+..++...+ .. +.++|.++.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998888777777666653 33 77888877654
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=4.8e-14 Score=104.56 Aligned_cols=130 Identities=17% Similarity=0.116 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 182 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 182 (292)
.+++.+|.++...|++++|+..+++ |.++.++..++.++...|++++|...+++++...|++.......+.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 4567888999999999999998886 6677888888999999999999999999999999888755555554443
Q ss_pred hccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 183 VGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
..|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|++
T Consensus 81 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 -KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp -TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred -HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 45679999999999999999999999999999999999999999999999999874
No 115
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.61 E-value=8.2e-15 Score=115.65 Aligned_cols=130 Identities=8% Similarity=0.028 Sum_probs=93.5
Q ss_pred HhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH-HHhcCCH--H
Q 022777 147 LKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC-CMHMGNF--D 223 (292)
Q Consensus 147 ~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~--~ 223 (292)
...|++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|+++.++..+|.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW--QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356777778888888887777776655555555444 3458888888888888888888888888887 6777887 8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 224 EAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 224 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
+|+..|++++..+|+++.+++++|.++...|++ |..+++++++.+|+++....+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 888888888888888888888888888777777 7778888888888776554443
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.2e-14 Score=105.89 Aligned_cols=114 Identities=17% Similarity=-0.001 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
.+.+..+|..+...|++++|+..|+++++.+|++.......+.++... |++++|+..|++++..+|+++.+++.+|.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 455666777777777777777777777777777765555555554443 457777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 022777 216 CMHMGNFDEAEGLLLDALNKD------AKDPETLANLVVCSL 251 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 251 (292)
+..+|++++|+..|+++++++ |+++.++..+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 777777777777777777777 777777766666543
No 117
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.60 E-value=5.7e-13 Score=115.56 Aligned_cols=222 Identities=7% Similarity=-0.081 Sum_probs=162.0
Q ss_pred HHhhCChh-HHHHhhhhc---CCchHHHHHHHHHhhcCCCC----------hhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 50 YIALGSYQ-LVISEIDES---AATPLQAVKLLALYLSSPDN----------KESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 50 ~~~~g~~~-~Al~~~~~a---~~~~~~a~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
....|+++ +|+..+..+ +|.+..+|..-..++...+. +++++..+..++.. +|++..++...+-
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556665 577777665 55556665544444432222 56788888888887 8999999999998
Q ss_pred HHHhcCC--HHHHHHHhhc-----CCchhHHHHHHHHHHhCCC-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---
Q 022777 116 IFMHEED--YNEALKHTNA-----GGTMELHALNVQIFLKMHR-SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG--- 184 (292)
Q Consensus 116 ~~~~~g~--~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~-~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~--- 184 (292)
++...|+ +++++.++++ |.+..++..++.+....|. +++++..+.+++..+|.+...+...+++.....
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 8888884 8889988887 7888888888888888888 588999999999999988755444443332221
Q ss_pred ---------cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHH
Q 022777 185 ---------GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM-----------GNFDEAEGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 185 ---------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~ 244 (292)
.+.++++++.+.+++..+|+|..+|+.+..++... +.++++++.+.++++++|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 15688999999999999999999998776666665 4688999999999999999865554
Q ss_pred HHHHHHHh---cCCc--HHHHHHHHHhhCCCChh
Q 022777 245 NLVVCSLH---QGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 245 ~l~~~~~~---~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.++.+... .|.. ...++.++.+++|-...
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 44443322 2333 77888999999987753
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=1.9e-14 Score=124.25 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=114.2
Q ss_pred hCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCC------ccHHHHHHHHHHHHhcCCHHHH
Q 022777 53 LGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIG------SNATLRLIAGIIFMHEEDYNEA 126 (292)
Q Consensus 53 ~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p------~~~~~~~~la~~~~~~g~~~~A 126 (292)
.+++++|+..+.++ +.++...|++++|+..|.+++.. .+ .....+..+|.+|...|++++|
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 95 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEA--HANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 35566666555433 45566677888888888777654 22 2355777888888888888888
Q ss_pred HHHhhc-------CCc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhccccHH
Q 022777 127 LKHTNA-------GGT----MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH------TLTQLANAWLNLAVGGSKIQ 189 (292)
Q Consensus 127 ~~~~~~-------~~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~------~~~~l~~a~~~l~~~~~~~~ 189 (292)
+.+|++ ..+ ..++..+|.+|.. |++++|+..|++++++.|.. .......+.++ ...|+++
T Consensus 96 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~--~~~g~~~ 172 (307)
T 2ifu_A 96 VQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL--VRQQKFD 172 (307)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH--HHcCCHH
Confidence 888776 122 2356677788877 88888888888888775432 11122222222 2346688
Q ss_pred HHHHHHHHhHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 022777 190 EAYLIFQDFSEKYPMT------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 190 ~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (292)
+|+..|++++...|++ ..++..+|.++..+|++++|+..|++++ ++|+..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 8888888887765433 2467777888888888888888888888 887654
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-14 Score=105.05 Aligned_cols=121 Identities=12% Similarity=-0.025 Sum_probs=106.9
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
+.++.++..+|.++...|++++|+..++++++.+|++.......+.++. ..+++++|+..+++++...|+++.++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT--KLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT--TTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 4566788889999999999999999999999999988766666555543 45679999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
|.++...|++++|+..|++++..+|+++.++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999887764
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=8.8e-14 Score=102.82 Aligned_cols=121 Identities=12% Similarity=-0.009 Sum_probs=106.0
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKA 213 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 213 (292)
..+..+..+|.++...|++++|+..+++++..+|++.......+.++.. .|++++|+..+++++...|+++.+++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK--LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4456777888899999999999999999999999887666666665554 45699999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
.++...|++++|+..|++++..+|+++.++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999887763
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=1.3e-13 Score=111.70 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHH
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM 217 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 217 (292)
.+..+|.++...|++++|+..+++++ +| +.......+.++.. .|++++|+..|++++..+|+++.+++.+|.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI--LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 35678999999999999999999985 44 44444445555444 467999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 218 HMGNFDEAEGLLLDALNKDAKDP----------------ETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
..|++++|+..|++++++.|++. .+++++|.++...|++ |.+.++++.+.+|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999988877 9999999999999998 99999999999998743
No 122
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.57 E-value=3.4e-15 Score=133.29 Aligned_cols=213 Identities=13% Similarity=0.034 Sum_probs=86.9
Q ss_pred hhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CCchHHHHHHHHHhhcCCCChhHHHH
Q 022777 15 NNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AATPLQAVKLLALYLSSPDNKESTIS 92 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~~~~~a~~~la~~~~~~~~~~~A~~ 92 (292)
.+...|++++||+. +.+ .| +..++..++.++...|++++|+.+++.+ ..+++.....++.++.+.|+.+++.+
T Consensus 41 A~l~~g~~~eAIds--fik-a~--D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~ 115 (449)
T 1b89_A 41 AQLQKGMVKEAIDS--YIK-AD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 115 (449)
T ss_dssp -------------------------------------------------------------------------CHHHHTT
T ss_pred HHHHcCCHHHHHHH--HHc-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHH
Confidence 45667888888887 333 12 2346677788888888888888877766 33334445567777777788777654
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHH
Q 022777 93 SLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLT 172 (292)
Q Consensus 93 ~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 172 (292)
.+ . .|+ ...+..+|..+...|++++|..+|.+.+ .+..++.++.+.|++++|+..++++ .++..
T Consensus 116 f~----~---~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~ 179 (449)
T 1b89_A 116 FI----N---GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS---NFGRLASTLVHLGEYQAAVDGARKA-----NSTRT 179 (449)
T ss_dssp TT----T---CC-----------------CTTTHHHHHHHTT---CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHH
T ss_pred HH----c---CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh---hHHHHHHHHHHhccHHHHHHHHHHc-----CCchh
Confidence 43 2 243 3577888888888888888888888653 4677788888888888888888887 12222
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 173 QLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 173 ~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
+... +......|++..|..+...++ .+|++ +..+..+|.+.|++++|+.++++++.++|.+..++..++.+|.+
T Consensus 180 Wk~v--~~aCv~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 180 WKEV--CFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHH--HHHHHHTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHH--HHHHHHcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 2221 122223456888866666533 45444 33577778888888888888888888888888888888877765
Q ss_pred cC
Q 022777 253 QG 254 (292)
Q Consensus 253 ~g 254 (292)
.+
T Consensus 254 y~ 255 (449)
T 1b89_A 254 FK 255 (449)
T ss_dssp TC
T ss_pred cC
Confidence 44
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.57 E-value=4.9e-14 Score=109.94 Aligned_cols=116 Identities=7% Similarity=-0.070 Sum_probs=100.0
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 022777 134 GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKA 213 (292)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 213 (292)
...+.+..+|.++...|++++|+..|+++++.+|++.......+.+++.. |++++|+..|++++..+|+++.+++.+|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788899999999999999999999999999887776666666554 5699999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
.++..+|++++|+..|+++++++|+++.++++.+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999998877776543
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=4.3e-14 Score=108.84 Aligned_cols=109 Identities=17% Similarity=-0.000 Sum_probs=90.0
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
|.+++++..+|.++...|++++|+..+++++..+|++...+...+.++.. .|++++|+..|++++..+|+++.+++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA--MGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 44555666677777777777777888888888888887666666655544 4569999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
|.++..+|++++|+..|+++++++|+++...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999987654
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=2.5e-14 Score=115.13 Aligned_cols=145 Identities=10% Similarity=-0.097 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH--------------
Q 022777 110 RLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT-------------- 170 (292)
Q Consensus 110 ~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~-------------- 170 (292)
....+......|++++|.+.++. +.....+..+|.++...|++++|+..|+++++..|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34445566778888989888886 24556678889999999999999999999999877664
Q ss_pred --HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 171 --LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 171 --~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
......+.+++. .|++++|+..+++++...|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.
T Consensus 87 ~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 87 EISCNLNLATCYNK--NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 334444444443 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCc
Q 022777 249 CSLHQGKS 256 (292)
Q Consensus 249 ~~~~~g~~ 256 (292)
++...++.
T Consensus 165 ~~~~~~~~ 172 (198)
T 2fbn_A 165 CVNKLKEA 172 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98776654
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=3.8e-14 Score=108.05 Aligned_cols=112 Identities=16% Similarity=0.020 Sum_probs=95.0
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGK 212 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 212 (292)
|++.+.+..+|.++...|++++|+..+++++..+|++...+...+.++.. .|++++|+..|++++..+|+++.+++.+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS--LGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45566677778888888888888888899999999988777766666554 4569999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 213 AVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
|.++...|++++|+..|+++++++|+++......
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999999999988765433
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.56 E-value=7.4e-13 Score=114.85 Aligned_cols=188 Identities=10% Similarity=-0.009 Sum_probs=161.0
Q ss_pred CCCh-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHhhc-----CCchhHHHHHHHHHH
Q 022777 84 PDNK-ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED----------YNEALKHTNA-----GGTMELHALNVQIFL 147 (292)
Q Consensus 84 ~~~~-~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~-----~~~~~~~~~~a~~~~ 147 (292)
.|++ ++|+..+.+++.. +|++..++...+.++...|+ +++++.+++. |.+..++..++.++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3554 6899999999999 99999999999999988776 6888888876 899999999999999
Q ss_pred hCCC--hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc-HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc-----
Q 022777 148 KMHR--SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK-IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM----- 219 (292)
Q Consensus 148 ~~~~--~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----- 219 (292)
..++ +++++..+.++++.+|.+...+....|+.... +. ++++++.+.++++.+|.|..+|+.++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l--~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA--AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 9985 89999999999999999987776666654433 34 69999999999999999999999999999988
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CC----------c--HHHHHHHHHhhCCCChhHH
Q 022777 220 ---------GNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ-GK----------S--TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 220 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~----------~--a~~~~~~~~~~~P~~~~~~ 275 (292)
+.+++++..+.+++..+|+|..+|+.+..++... |. . +++.++++++..|++.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5689999999999999999999997655544433 42 2 7789999999999998854
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.5e-14 Score=103.25 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=90.3
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYL 261 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~ 261 (292)
..|++++|+..|++++...|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++...|++ |...+
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 95 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHhhC------CCChhHHhHHhh
Q 022777 262 NQLKLTH------PDHMLVKRASSG 280 (292)
Q Consensus 262 ~~~~~~~------P~~~~~~~~~~~ 280 (292)
+++++++ |+++.+......
T Consensus 96 ~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 96 DAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhCcccCCchhHHHHHHHHHH
Confidence 9999999 888877665443
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=3.8e-13 Score=115.17 Aligned_cols=212 Identities=14% Similarity=0.092 Sum_probs=158.1
Q ss_pred hhhhhhhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCC
Q 022777 10 LFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDN 86 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~ 86 (292)
+|..+.+..+|+|... ...+|. ..+ +.+...|.. ++ |+..+++. .++...++..+|.++...|+
T Consensus 49 ~~~~Rs~iAlg~~~~~------~~~~~~--~~a-~~~la~~~~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~ 115 (310)
T 3mv2_B 49 FYKAKTLLALGQYQSQ------DPTSKL--GKV-LDLYVQFLD-TK---NIEELENLLKDKQNSPYELYLLATAQAILGD 115 (310)
T ss_dssp HHHHHHHHHTTCCCCC------CSSSTT--HHH-HHHHHHHHT-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCccC------CCCCHH--HHH-HHHHHHHhc-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 4566777777877631 122232 122 222233333 22 77777765 24556667789999888899
Q ss_pred hhHHHHHHHHHhcCCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHhhc----CC-----chhHHHHHHHH--HHhCC--C
Q 022777 87 KESTISSLKEWLSDPAIG--SNATLRLIAGIIFMHEEDYNEALKHTNA----GG-----TMELHALNVQI--FLKMH--R 151 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~-----~~~~~~~~a~~--~~~~~--~ 151 (292)
+++|+..+.+.+.. .| ++.+.+..++++++.+|+++.|.+.+++ .+ +......++.. .+..| +
T Consensus 116 ~eeAL~~l~~~i~~--~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 116 LDKSLETCVEGIDN--DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp HHHHHHHHHHHHTS--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHhcc--CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 99999999999887 55 8999999999999999999999999976 23 23444555433 55555 9
Q ss_pred hHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh----------CCCCHHHHHHHHHHHHhc
Q 022777 152 SDYAERQLRAMQQIDED--HTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK----------YPMTGLILNGKAVCCMHM 219 (292)
Q Consensus 152 ~~~A~~~l~~~~~~~p~--~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~~la~~~~~~ 219 (292)
+.+|...|+++.+..|+ +....+. +++ ..|++++|...++.+++. +|+++.++.++..+...+
T Consensus 194 ~q~A~~~f~El~~~~p~~~~~~lLln---~~~--~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l 268 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPTWKTQLGLLN---LHL--QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ 268 (310)
T ss_dssp TTHHHHHHHHHHTTSCSHHHHHHHHH---HHH--HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHH---HHH--HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998887 2222222 333 346799999999988776 488999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 220 GNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
|+ +|.++++++.+.+|++|-+.
T Consensus 269 gk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 269 GL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TC--TTHHHHHHHHHTTCCCHHHH
T ss_pred Ch--HHHHHHHHHHHhCCCChHHH
Confidence 98 99999999999999999776
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=3.4e-13 Score=104.30 Aligned_cols=129 Identities=11% Similarity=-0.031 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
...+..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|+++.+++.+|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45677888999999999999999999999999887666666655544 4569999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCc--HHHHHHHHHh
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC--SLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~--a~~~~~~~~~ 266 (292)
+...|++++|+..|++++.++|+++.++..++.+ +...|++ |.+.+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999999988665554 6666776 7777766654
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=7e-13 Score=97.06 Aligned_cols=117 Identities=19% Similarity=0.112 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH
Q 022777 136 MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC 215 (292)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 215 (292)
..++..++.++...|++++|+..+++++...|++.......+.++.. .|++++|+..|++++...|+++.++..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 56677888888899999999999999999888887655555554443 4679999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 216 CMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
+...|++++|+..+++++..+|+++.++.+++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998877654
No 132
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=6.2e-13 Score=96.41 Aligned_cols=114 Identities=16% Similarity=0.076 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
.++.+..+|.++...|++++|+..+++++..+|++.......+.++.. .|++++|+..+++++...|+++.++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK--KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh--hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345677888888899999999999999999888887666655555544 356999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022777 215 CCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCS 250 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 250 (292)
++...|++++|+..|+++++.+|+++.++..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999998888887654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=4.4e-14 Score=111.39 Aligned_cols=123 Identities=12% Similarity=0.009 Sum_probs=85.9
Q ss_pred hcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhccccH--HH
Q 022777 119 HEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWL-NLAVGGSKI--QE 190 (292)
Q Consensus 119 ~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~-~l~~~~~~~--~~ 190 (292)
..|++++|+..+++ |.++.++..+|.++...|++++|+..++++++.+|++.......+.+ +.. .|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~--~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ--ASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cCCcchHH
Confidence 34444444444443 44445555555555566666666666677777777776555554544 333 3457 89
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999987654
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=2.2e-14 Score=125.59 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=126.1
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc---------------hhHHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT---------------MELHALNV 143 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~---------------~~~~~~~a 143 (292)
.+++++|+..++..+.. .|+++..+..+|.+++..|++++|+..|++ |.+ ..++..+|
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34566676666666655 688888999999999999999999999987 555 57899999
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 223 (292)
.++..+|++++|+..++++++++|++....+..+.++.. .|++++|+..|+++++..|+++.++..+|.++...|+++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766666666554 457999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhh
Q 022777 224 EA-EGLLLDALNK 235 (292)
Q Consensus 224 ~A-~~~~~~al~~ 235 (292)
+| ...|++++..
T Consensus 282 ~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 282 AREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 99 5678887754
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.52 E-value=8.7e-14 Score=120.01 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhc-------CCc-h-HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCC---CCc-cHH
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDES-------AAT-P-LQAVKLLALYLSSPDNKESTISSLKEWLSDPA---IGS-NAT 108 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a-------~~~-~-~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~p~-~~~ 108 (292)
.+...+.+|..+|++++|+..+.++ ..+ . ..++..++.++...|++++|+..|++++.... +|. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444567777888888888777765 111 1 44566777777777888888888887765300 111 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH------H
Q 022777 109 LRLIAGIIFMHEEDYNEALKHTNA-----G--GT----MELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT------L 171 (292)
Q Consensus 109 ~~~~la~~~~~~g~~~~A~~~~~~-----~--~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~------~ 171 (292)
++..+|.+|.. |++++|+..|++ + ++ ..++..+|.+|..+|++++|+..+++++++.|.+. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67778888877 888888888876 1 11 34566778888888888888888888887754321 1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH-----HHHHHHHHHHHhcCCHHHHHH
Q 022777 172 TQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG-----LILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 172 ~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 227 (292)
..+..+.+++ ..|++++|+..|++++ ..|..+ ..+..++..+ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~--~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQL--HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2222222332 2356888888888877 777543 1233344433 4566544443
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=1.5e-13 Score=102.06 Aligned_cols=87 Identities=21% Similarity=0.119 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++ |...+++
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44666666666666666666666666666666666666666666666666666666666666666666655 6666666
Q ss_pred HHhhCCCCh
Q 022777 264 LKLTHPDHM 272 (292)
Q Consensus 264 ~~~~~P~~~ 272 (292)
+++.+|+++
T Consensus 111 al~~~P~~~ 119 (121)
T 1hxi_A 111 WLLSQPQYE 119 (121)
T ss_dssp HHC------
T ss_pred HHHhCcCCC
Confidence 666666554
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=1.9e-13 Score=101.45 Aligned_cols=103 Identities=15% Similarity=-0.023 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
..+..+|.++...|++++|+..++++++.+|++...++.++.++.. .|++++|+..|+++++.+|+++.++..+|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE--NEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999998777777766554 46799999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 217 MHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
...|++++|+..|+++++++|+++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999998764
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=5.6e-13 Score=103.87 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 173 QLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 173 ~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
....+.+++ ..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++++|.++..
T Consensus 14 ~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 14 LKSEGNAAM--ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444444 356799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc--HHHHHHHHHhhCCCChh
Q 022777 253 QGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 253 ~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
.|++ |.+.++++++++|+++.
T Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ccCHHHHHHHHHHHHHhCCCchH
Confidence 9998 99999999999999986
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=8.4e-12 Score=106.61 Aligned_cols=163 Identities=9% Similarity=-0.003 Sum_probs=124.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCch------hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc--
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTM------ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH-- 169 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~------~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~-- 169 (292)
.|.....+...+..++..|++++|+..+.+ +... .....++.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 455666777888899999999999998875 2222 234567888889999999999999998764332
Q ss_pred ----HHHHHHHHHHHHHhccccHHHHHHHHHHhH---hhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 170 ----TLTQLANAWLNLAVGGSKIQEAYLIFQDFS---EKYPMTG----LILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 170 ----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
.......+.++. ..|++++|+..|++++ +..|+++ .+++++|.++..+|++++|+..+++++.+.++
T Consensus 151 ~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 151 VYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 112223333333 3567999999999988 5566643 68999999999999999999999999987543
Q ss_pred ------CHHHHHHHHHHHHhcCCc--H-HHHHHHHHhh
Q 022777 239 ------DPETLANLVVCSLHQGKS--T-SRYLNQLKLT 267 (292)
Q Consensus 239 ------~~~~~~~l~~~~~~~g~~--a-~~~~~~~~~~ 267 (292)
-..+++++|.++...|++ | ..+++++..+
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 167889999999999998 7 7778888764
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=2.7e-12 Score=111.91 Aligned_cols=182 Identities=7% Similarity=-0.027 Sum_probs=156.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC-CHHHHHHHhhc-----CCchhHHHHHHH
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE-DYNEALKHTNA-----GGTMELHALNVQ 144 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~-----~~~~~~~~~~a~ 144 (292)
..++..+..+....+..++|+..+.+++.. +|++..++...+.++...| .+++++..++. |.+..++..++.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 444444555555556678899999999998 9999999999999999999 59999999987 889999999999
Q ss_pred HHHhC-C-ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHH--------HHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 145 IFLKM-H-RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQ--------EAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 145 ~~~~~-~-~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
++... + ++++++..+.++++.+|.+...+....|+.-..+ +++ ++++.+.++++.+|.|..+|+.++.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~--~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS--TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88887 7 9999999999999999999877666666543332 344 9999999999999999999999999
Q ss_pred HHHhcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 215 CCMHMGN-------FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 215 ~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
++...++ +++++..+.+++.++|+|..+|..+..++...|+.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999997 79999999999999999999999988888776653
No 141
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=1.9e-14 Score=106.04 Aligned_cols=99 Identities=9% Similarity=0.056 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHhHhh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHH
Q 022777 186 SKIQEAYLIFQDFSEK---YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRY 260 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~ 260 (292)
|++++|+..|+++++. +|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++ |...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567777777777776 4666677777777777777777777777777777777777777777777777776 7777
Q ss_pred HHHHHhhCCCChhHHhHHhhHHHH
Q 022777 261 LNQLKLTHPDHMLVKRASSGDESF 284 (292)
Q Consensus 261 ~~~~~~~~P~~~~~~~~~~~~~~~ 284 (292)
++++++..|+++.+..+......|
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH
Confidence 777777777777666554444333
No 142
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=1.5e-12 Score=96.69 Aligned_cols=111 Identities=14% Similarity=-0.015 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILN 210 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 210 (292)
++++.+|.++...|++++|+..++++++.+|++. ...+..+.++.. .|++++|+..|++++..+|++ +.+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA--TRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 3456667777777777777777777777777665 334444444333 345777777777777777777 67777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
.+|.++...|++++|+..|++++...|+++.+......+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 777777777777777777777777777777665544443
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-12 Score=98.67 Aligned_cols=117 Identities=15% Similarity=-0.017 Sum_probs=96.7
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLIL 209 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 209 (292)
+.+...+..+|..+...|++++|+..++++++.+|++ .......+.++.. .+++++|+..+++++...|+++.++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK--LEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHhhCccCHHHH
Confidence 4566778888888888899999999999999888886 4444444444443 4569999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSL 251 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 251 (292)
+.+|.++...|++++|+..|++++.++|+++.++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999998888777653
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.3e-12 Score=121.89 Aligned_cols=169 Identities=9% Similarity=-0.035 Sum_probs=151.9
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHhhc-----CCchhHHHHHHHHHHhC
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED----------YNEALKHTNA-----GGTMELHALNVQIFLKM 149 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~-----~~~~~~~~~~a~~~~~~ 149 (292)
...++|+..+.+++.. +|++..+|...+.++...|+ +++++..+++ |.+..++..++-++...
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3457889999999998 99999999999999999998 9999999997 89999999999999999
Q ss_pred C--ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc--------
Q 022777 150 H--RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM-------- 219 (292)
Q Consensus 150 ~--~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-------- 219 (292)
+ ++++++..++++++.+|.+...+...+|+....+ ..++++++.+.++++.+|.+..+|+.+|.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~-~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC-CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 6699999999999999999877777776654443 1699999999999999999999999999999885
Q ss_pred ------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 220 ------GNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 220 ------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+.++++++.+.+++.++|+|..+|+.++.++...+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 6689999999999999999999999999988877764
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.49 E-value=1.4e-13 Score=117.35 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGII 116 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~ 116 (292)
..+++.+|..+...|++++|+..++++ .|.+..++..+|.++...|++++|+..+++++.. +|+++.+++.+|.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 577888999999999999999999987 6778889999999999999999999999999998 99999999999999
Q ss_pred HHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHH
Q 022777 117 FMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEA 191 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A 191 (292)
+...|++++|+..|++ |+++......+..... ..++...........|.+....-..+ .+. .|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~--~l~--~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLT--RLI--AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHH--HHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH--HHH--HHHHHHH
Confidence 9999999999999987 3221111111111111 12222222222233444332211111 122 3569999
Q ss_pred HHHHHHhHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhC
Q 022777 192 YLIFQDFSEKYPMTGLILNGKAVCCMHM-GNFDEAEGLLLDALNKD 236 (292)
Q Consensus 192 ~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 236 (292)
+..++++++..|++......++.++.+. +++++|.+.|.++.+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999998888888888777 78999999999988643
No 146
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.48 E-value=4.9e-14 Score=128.47 Aligned_cols=135 Identities=12% Similarity=0.035 Sum_probs=106.4
Q ss_pred cCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---------------HHHHHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---------------TLTQLANAWL 179 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---------------~~~~l~~a~~ 179 (292)
.+++++|+..++. +....++..+|.++...|++++|+..|+++++++|.+ ....+.++.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655 3455567778888888888888888888888887776 3444444555
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
++. .+++++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..++.+++.++...|+.
T Consensus 327 ~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 327 YLK--LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHH--hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 544 456999999999999999999999999999999999999999999999999999999999999999888876
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=1.3e-12 Score=97.97 Aligned_cols=102 Identities=12% Similarity=-0.072 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
++..+..+|.++...|++++|+..+++++..+|++.......+.++.. .|++++|+..|++++..+|+++.+++.+|.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK--MQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 344455555555555555555555555555555554444433333332 233555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 215 CCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
++...|++++|+..|++++.++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555555
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=3e-12 Score=98.93 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 180 (292)
.+..+..+|.++...|++++|+..|++ |.++.++..+|.++...|++++|+..++++++.+|++.......+.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355667777778888888888877776 567777777888888888888888888888888887765555555544
Q ss_pred HHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhh
Q 022777 181 LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV--CCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 181 l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 235 (292)
.. .|++++|+..|++++...|+++.++..++. .+...|++++|+..++++...
T Consensus 92 ~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MA--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 43 356888888888888888888777744444 477788888888888776543
No 149
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.47 E-value=1.5e-12 Score=116.25 Aligned_cols=230 Identities=7% Similarity=-0.026 Sum_probs=86.3
Q ss_pred CCCchhhhh-hhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcC
Q 022777 6 APDHLFNLR-NNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS 83 (292)
Q Consensus 6 ~~~~~~~~~-~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~ 83 (292)
|+.-+..++ .+...|+|++|+...+ ..+..|+ +.....++.+|.++|++.++..+++ +|+..++..+|..+..
T Consensus 60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~--~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT---CC--------------
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 444444444 4455788888888844 4443332 3445557778888888888777764 3444577777777777
Q ss_pred CCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 84 PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 84 ~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
.|.+++|+..|.++ ..+..+|.++.+.|++++|++.+++..++..+.....+++..|+++.|......+
T Consensus 135 ~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L- 203 (449)
T 1b89_A 135 EKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI- 203 (449)
T ss_dssp --CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTT-
T ss_pred cCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHH-
Confidence 77888888777754 1367778888888888888888877556655555545555555444444333321
Q ss_pred hhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCC----
Q 022777 164 QIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH--MGNFDEAEGLLLDALNKDA---- 237 (292)
Q Consensus 164 ~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p---- 237 (292)
..+|++.. ..+.++...|++++|+..+++++...+....+++.+|.++.+ .++..+.++.|...+.+.|
T Consensus 204 ~~~ad~l~-----~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 204 VVHADELE-----ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp TTCHHHHH-----HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred HhCHhhHH-----HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 13333311 111222233344444444444444444444444444444432 3344444444444444444
Q ss_pred -CCHHHHHHHHHHHHhcCCc
Q 022777 238 -KDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~ 256 (292)
.++..|..++.+|.+.+.+
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhhchH
Confidence 4444444444444444443
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=1.5e-12 Score=97.74 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=94.8
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
+|.+.......+..++. .|++++|+..|++++...|+++.+++.+|.++...|++++|+..+++++.++|+++.++++
T Consensus 5 ~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFV--GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45555444555544444 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCc--HHHHHHHHHhhCCC-----ChhHHhH
Q 022777 246 LVVCSLHQGKS--TSRYLNQLKLTHPD-----HMLVKRA 277 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~~~~P~-----~~~~~~~ 277 (292)
+|.++...|++ |...++++++..|+ ++.+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 121 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 121 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHH
Confidence 99999999998 99999999999998 5555444
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=1.5e-12 Score=101.22 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQI------------------DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~------------------~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
+.+..+|..+...|++++|+..|++++.. +|.+.......+.+++. .|++++|+..++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN--IGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH--HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 34556677777777777777777777766 33333333333333333 23466666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 022777 199 SEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP-ETLANLVVC 249 (292)
Q Consensus 199 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~ 249 (292)
+..+|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...+..+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666 444444444
No 152
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=2.9e-13 Score=104.32 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFD----------EAEGLLLDALNKDAKDPETLANLVVCSLHQG- 254 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g- 254 (292)
+++++|+..++++++.+|+++++++++|.++...++++ +|+..|+++++++|+++++++++|.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34888888888888888888888888888888887754 8888888888888888888888888887664
Q ss_pred ----------Cc--HHHHHHHHHhhCCCChhHHhH
Q 022777 255 ----------KS--TSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 255 ----------~~--a~~~~~~~~~~~P~~~~~~~~ 277 (292)
++ |+++++++++++|+++.....
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45 888888888888888754443
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=2.1e-12 Score=95.22 Aligned_cols=118 Identities=12% Similarity=-0.007 Sum_probs=103.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
.|.++..+..+|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..+++++..+|++.......+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 577788999999999999999999999987 678888999999999999999999999999999999876666666
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 222 (292)
.++.. .|++++|+..|++++...|+++.++..+|.++...|++
T Consensus 88 ~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSS--LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHH--hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 55554 45699999999999999999999999999999998875
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=3.9e-12 Score=94.36 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHhHhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCc--
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTG---LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD---PETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~-- 256 (292)
.|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++++|.++...|++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 4679999999999999999988 899999999999999999999999999999999 89999999999999998
Q ss_pred HHHHHHHHHhhCCCChhHHhHHhhHHHH
Q 022777 257 TSRYLNQLKLTHPDHMLVKRASSGDESF 284 (292)
Q Consensus 257 a~~~~~~~~~~~P~~~~~~~~~~~~~~~ 284 (292)
|...++++.+.+|+++.+..........
T Consensus 95 A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 95 AQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999887765554443
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=2.9e-12 Score=95.11 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=88.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 177 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a 177 (292)
.|.++..++.+|.++...|++++|+..|++ |.+..++..+|.++...|++++|+..++++++.+|++.......+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 466777777777777777888888777776 566777777788888888888888888888888887765555555
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 178 WLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGN 221 (292)
Q Consensus 178 ~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 221 (292)
.++.. .|++++|+..|++++...|+++.++..++.++...|+
T Consensus 92 ~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEA--MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHH--HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 55443 3568888888888888888888888888888877664
No 156
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=5.9e-12 Score=119.49 Aligned_cols=216 Identities=8% Similarity=0.004 Sum_probs=177.3
Q ss_pred HHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHH-HHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcC-
Q 022777 59 VISEIDES---AATPLQAVKLLALYLSSPDNKESTI-SSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAG- 133 (292)
Q Consensus 59 Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~- 133 (292)
+...|+++ .|.....|...+.++...|+.++|+ .+|++++.. +|.+...++.++.+....|+++.|..+|++.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44567766 6777889999999988888888997 999999988 8999999999999999999999999998861
Q ss_pred --------------C------------chhHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhcc-
Q 022777 134 --------------G------------TMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGG- 185 (292)
Q Consensus 134 --------------~------------~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~- 185 (292)
+ ...++...+.+..+.|..+.|..++.++++. .+......+. ++.+....
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~--~A~lE~~~~ 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE--NAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH--HHHHHHTTT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHHhC
Confidence 1 1235777778888889999999999999987 4333333333 23333222
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCc--HHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK---DPETLANLVVCSLHQGKS--TSRY 260 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~--a~~~ 260 (292)
++++.|..+|+++++.+|+++.++...+......|+.+.|...|++++...|+ ...+|..+.......|.. +.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999883 556777777777788987 8999
Q ss_pred HHHHHhhCCCChhHHhHH
Q 022777 261 LNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 261 ~~~~~~~~P~~~~~~~~~ 278 (292)
.+++.+..|+++.+..+.
T Consensus 564 ~~R~~~~~P~~~~~~~f~ 581 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHSTTCCHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHH
Confidence 999999999999877763
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=2.6e-13 Score=118.83 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDEDHT-----------------LTQLANAWLNLAVGGSKIQEAYLIFQDFSE 200 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~ 200 (292)
.+..+|..+...|++++|+..|++++...|++. ...+.++.+++ ..+++++|+..|++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~--~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI--KLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH--TTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555554432 12233333333 45679999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-Cc--HHHHHHHHHhhCCCChh
Q 022777 201 KYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG-KS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 201 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~--a~~~~~~~~~~~P~~~~ 273 (292)
.+|+++.+++++|.++..+|++++|+..|+++++++|+++.++.+++.+..... .. +.+.++++....|+++.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999999999999999998855443 33 78899999999998874
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=3.6e-12 Score=95.27 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCc--
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDP-------ETLANLVVCSLHQGKS-- 256 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~-- 256 (292)
|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++++++|+++ .+++++|.++...|++
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~ 101 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHH
Confidence 4466666666666666666666666666666666666666666666665555442 2455555566555555
Q ss_pred HHHHHHHHHhhCCC
Q 022777 257 TSRYLNQLKLTHPD 270 (292)
Q Consensus 257 a~~~~~~~~~~~P~ 270 (292)
|+++++++++.+|+
T Consensus 102 A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 102 AVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhCcC
Confidence 55666666555554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=1.6e-12 Score=97.21 Aligned_cols=107 Identities=11% Similarity=0.001 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCH-------HHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTG-------LIL 209 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~ 209 (292)
.++..+|..+...|++++|+..|+++++++|++.......+.+++. .|++++|+..|+++++..|+++ .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE--EKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH--hhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567899999999999999999999999999998766666666554 4679999999999999877653 588
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANL 246 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 246 (292)
..+|.++..+|++++|+..|++++...|+ ++....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 99999999999999999999999999886 6655444
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.43 E-value=2.9e-13 Score=108.87 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHH
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCC 216 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 216 (292)
.++..+|.++...|++++|+..++++++.+|++....+..+.++.. .|++++|+..|++++...|+++.++..++.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY--FGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 6777888999999999999999999999999887666666655544 35699999999999999999999999999999
Q ss_pred HhcCCHHHHH-HHHHHHH
Q 022777 217 MHMGNFDEAE-GLLLDAL 233 (292)
Q Consensus 217 ~~~g~~~~A~-~~~~~al 233 (292)
...++..++. ..+.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9888888777 4444433
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=1.3e-11 Score=89.37 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLN 262 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~ 262 (292)
.|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++++|.++...|++ |.++++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHhhCCCChhHHhHH
Q 022777 263 QLKLTHPDHMLVKRAS 278 (292)
Q Consensus 263 ~~~~~~P~~~~~~~~~ 278 (292)
++.+.+|+++.+....
T Consensus 97 ~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 97 EGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHTTCTTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHH
Confidence 9999999998766543
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=2.2e-12 Score=92.71 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc-CCc--HHHH
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK--DPETLANLVVCSLHQ-GKS--TSRY 260 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-g~~--a~~~ 260 (292)
|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+ ++.+++++|.++... |++ |.++
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA 99 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44666666666666666666666666666666666666666666666666666 666666666666666 665 6666
Q ss_pred HHHHHhhCCCCh
Q 022777 261 LNQLKLTHPDHM 272 (292)
Q Consensus 261 ~~~~~~~~P~~~ 272 (292)
++++...+|.++
T Consensus 100 ~~~~~~~~p~~~ 111 (112)
T 2kck_A 100 EARAKLEHHHHH 111 (112)
T ss_dssp HHHHGGGCCCCC
T ss_pred HHHHhhcccCCC
Confidence 666666666553
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=3.2e-12 Score=99.31 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=86.9
Q ss_pred ccccHHHHHHHHHHhHhh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEK------------------YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
..|++++|+..|++++.. .|.++.+++++|.++..+|++++|+..+++++.++|+++.++++
T Consensus 23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 102 (162)
T 3rkv_A 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFR 102 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHH
Confidence 356799999999999998 67777999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCc--HHHHHHHHHhhCCCCh-hHHhH
Q 022777 246 LVVCSLHQGKS--TSRYLNQLKLTHPDHM-LVKRA 277 (292)
Q Consensus 246 l~~~~~~~g~~--a~~~~~~~~~~~P~~~-~~~~~ 277 (292)
+|.++...|++ |...++++++++|+++ .+...
T Consensus 103 ~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 103 RAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999998 9999999999999998 54443
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=4.9e-12 Score=93.34 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC-------HH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT-------GL 207 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~-------~~ 207 (292)
..+.+..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..+++++...|++ +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE--KGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345677788888888888888888888888888877655555555444 356888888888888887766 78
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
++..+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 888999999999999999999999999888 57778777776544
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.41 E-value=1.9e-11 Score=104.33 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchh----
Q 022777 67 AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGTME---- 137 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~---- 137 (292)
..|....+..++..+.- ..+. .+...... .++....+...+..++..|++++|+..+++ +..++
T Consensus 42 ~~~~~~~l~~i~~~l~~--~~~~---~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQI--PIIH---FYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp CCCCHHHHHHHHHHHTC--CTHH---HHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCc--CHHH---HhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH
Confidence 35666666777776653 2211 11111000 111223334457778899999999999886 22333
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc--H----HHHHHHHHHHHHhccccHHHHHHHHHHhHhh---C----
Q 022777 138 --LHALNVQIFLKMHRSDYAERQLRAMQQIDEDH--T----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEK---Y---- 202 (292)
Q Consensus 138 --~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~--~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~---~---- 202 (292)
.+..++.++...|++++|+..+++++...+.. . ......+.++. ..|++++|+..|+++++. .
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcccch
Confidence 23347788888889999999999999863222 1 11222233333 346799999999998742 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCC-c--HHHHHHHHHhh
Q 022777 203 PMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD------PETLANLVVCSLHQGK-S--TSRYLNQLKLT 267 (292)
Q Consensus 203 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~-~--a~~~~~~~~~~ 267 (292)
|..+.+++++|.++.++|++++|+.++++++++.+.. +.+++++|.++...|+ + |.+++++++.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2234588999999999999999999999999886544 7889999999999995 3 99999988875
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=1.4e-11 Score=105.15 Aligned_cols=161 Identities=9% Similarity=0.015 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccH------HHHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc--
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNA------TLRLIAGIIFMHEEDYNEALKHTNA-----G--GT-- 135 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~-----~--~~-- 135 (292)
...+...+..+...|++++|+..+.+.+.. .|... ..++.+|.++...|++++|+..+++ + .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcc--ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 344555666677789999999999998876 44433 4467789999999999999999876 1 11
Q ss_pred --hhHHHHHHHHHHhCCChHHHHHHHHHHHh---hCCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--
Q 022777 136 --MELHALNVQIFLKMHRSDYAERQLRAMQQ---IDEDHT----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM-- 204 (292)
Q Consensus 136 --~~~~~~~a~~~~~~~~~~~A~~~l~~~~~---~~p~~~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~-- 204 (292)
..++..+|.+|..+|++++|+..++++++ ..|++. ......+.++. ..|++++|+..+++++...++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--LDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--HHhhHHHHHHHHHHHHHHHHhcC
Confidence 34678899999999999999999999994 456542 12233333333 456799999999998876432
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 022777 205 ----TGLILNGKAVCCMHMGNFDEA-EGLLLDALNK 235 (292)
Q Consensus 205 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 235 (292)
-+.+++++|.++..+|++++| ..+|++++.+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267899999999999999999 8889999864
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-11 Score=93.70 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=97.3
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
+|.+.......+..++ ..|++++|+..|++++...|++ +.++..+|.++...|++++|+..+++++..+|+++.+
T Consensus 24 ~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 24 GASSVEQLRKEGNELF--KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TCCCHHHHHHHHHHHH--TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred chHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 4555555555554444 4567999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 243 LANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 243 ~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
++++|.++...|++ |..+++++++.+|+++.+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999998 9999999999999999876654
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.40 E-value=3.7e-12 Score=91.43 Aligned_cols=106 Identities=13% Similarity=-0.059 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CHHHHH
Q 022777 133 GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TGLILN 210 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~ 210 (292)
|++..++..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..|+++++..|+ ++.++.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN--LERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 45667788889999999999999999999999999887666666655544 45699999999999999999 999999
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q 022777 211 GKAVCCMHM-GNFDEAEGLLLDALNKDAKDP 240 (292)
Q Consensus 211 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 240 (292)
.+|.++... |++++|++.+++++...|.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999 999999999999999999864
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.40 E-value=3.1e-11 Score=105.23 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCC-ChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
.++.-++.......+..++|+..+.++ +|.+..++..-+.++...| ++++++..+..++.. +|++..++...+.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~w 131 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 344443333444445556788888876 7777777777777766666 588999999999988 8999999999998
Q ss_pred HHHhc-C-CHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChH--------HHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 022777 116 IFMHE-E-DYNEALKHTNA-----GGTMELHALNVQIFLKMHRSD--------YAERQLRAMQQIDEDHTLTQLANAWLN 180 (292)
Q Consensus 116 ~~~~~-g-~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~--------~A~~~l~~~~~~~p~~~~~~l~~a~~~ 180 (292)
++... + ++++++..+++ |.+..++..++.++...|.++ +++..++++++.+|.+...+...+++.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88887 7 88899988887 678888888888888877777 899999999999998875555544433
Q ss_pred HHhcc-----ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhh
Q 022777 181 LAVGG-----SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF--------------------DEAEGLLLDALNK 235 (292)
Q Consensus 181 l~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~ 235 (292)
...+. ..++++++.+++++..+|+|..+++.+..++...|+- .+-.....+.+..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 22221 1278999999999999999999999988888887764 2233333333332
Q ss_pred C------CCCHHHHHHHHHHHHhcCCc--HHHHHHHHH-hhCCCC
Q 022777 236 D------AKDPETLANLVVCSLHQGKS--TSRYLNQLK-LTHPDH 271 (292)
Q Consensus 236 ~------p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~-~~~P~~ 271 (292)
. +..+-++.-++.+|...|+. |.++++.+. +.+|=.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 2 46677788888888888876 888888775 456644
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1.5e-12 Score=100.45 Aligned_cols=90 Identities=13% Similarity=-0.005 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHHHhHhhCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCHHHH-
Q 022777 184 GGSKIQEAYLIFQDFSEKYPM-------TGL-----ILNGKAVCCMHMGNFDEAEGLLLDALNK-------DAKDPETL- 243 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~- 243 (292)
..|++++|+..|+++++..|+ +.. +|.++|.++..+|++++|+..|.++|++ +|+++.+|
T Consensus 23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence 357799999999999999998 443 9999999999999999999999999999 99999999
Q ss_pred ---HHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 244 ---ANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 244 ---~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
+++|.++..+|++ |+..+++++++.|++..
T Consensus 103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 103 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999998 99999999999999975
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.39 E-value=2.6e-12 Score=99.10 Aligned_cols=108 Identities=15% Similarity=-0.001 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHhccccHHHHHHHHHHhHhh----
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQIDED-------HTL-----TQLANAWLNLAVGGSKIQEAYLIFQDFSEK---- 201 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~-------~~~-----~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~---- 201 (292)
.+...|..+...|++++|+..|+++++++|+ +.. .+...+.++ ...|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al--~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL--AGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhhhcc
Confidence 4566788888888888888888888888887 332 222222222 2346799999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 202 ---YPMTGLIL----NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 202 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
+|+++.+| +++|.++..+|++++|+..|+++++++|++..+.-.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 99999999999999999999999999999876654443
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.39 E-value=1.4e-12 Score=95.79 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=82.6
Q ss_pred hCCChHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 022777 148 KMHRSDYAERQLRAMQQI---DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 224 (292)
.+|++++|+..|+++++. +|++......++.++.. .|++++|+..|+++++.+|+++.+++.+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT--LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 468999999999999999 57766666666665554 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH
Q 022777 225 AEGLLLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 225 A~~~~~~al~~~p~~~~~~~~l~~~ 249 (292)
|+..|++++...|+++.+......+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999876544433
No 173
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=2.5e-11 Score=88.58 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=95.1
Q ss_pred CCcc-HHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q 022777 103 IGSN-ATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLAN 176 (292)
Q Consensus 103 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~ 176 (292)
+|.. ...++.+|.++...|++++|+..+++ |.++.++..++.++...|++++|+..++++++..|++.......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4554 77888899999999999999999887 67788888899999999999999999999999988887655555
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC
Q 022777 177 AWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG 220 (292)
Q Consensus 177 a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 220 (292)
+.++.. .|++++|+..|++++...|+++.++..+|.++...|
T Consensus 84 a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 555443 456999999999999999999999999999887665
No 174
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.38 E-value=1.6e-11 Score=104.86 Aligned_cols=158 Identities=10% Similarity=0.014 Sum_probs=120.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHH------HHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc----h
Q 022777 74 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNAT------LRLIAGIIFMHEEDYNEALKHTNA-----G--GT----M 136 (292)
Q Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~-----~--~~----~ 136 (292)
+...+..+...|++++|+..+++++.. .|.++. .+..+|.++...|++++|+..+++ . .+ .
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 334455566679999999999999886 555443 344689999999999999999987 1 11 2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC----
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQI---DEDHT----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT---- 205 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~---~p~~~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~---- 205 (292)
.++..+|.+|...|++++|+..++++++. .|.+. ......++++. ..|++++|+..++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~--~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--LDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 36788999999999999999999999963 22221 12223333333 4567999999999988765433
Q ss_pred --HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 022777 206 --GLILNGKAVCCMHMGN-FDEAEGLLLDALNK 235 (292)
Q Consensus 206 --~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 235 (292)
+.+++.+|.++..+|+ +++|+..|++++.+
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7899999999999995 79999999999875
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=4.1e-13 Score=123.01 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM 219 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 219 (292)
..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..|+++++.+|+++.+++++|.++..+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445566777788888888888888877776555555544443 34588888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCc--HHHHHH
Q 022777 220 GNFDEAEGLLLDALNKDAKDPETLANLVVC--SLHQGKS--TSRYLN 262 (292)
Q Consensus 220 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~--a~~~~~ 262 (292)
|++++|+..|+++++++|+++.++.+++.+ +...|++ |.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888888877777777776 5556665 677776
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.35 E-value=6.1e-12 Score=96.88 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=82.8
Q ss_pred hCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhc
Q 022777 148 KMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG--------SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHM 219 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 219 (292)
+.+.+++|++.++++++++|++.......+.+++..+. +.+++|+..|+++++.+|+++.+++++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 45678999999999999999997555444433333221 2378999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 220 G-----------NFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 220 g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
| ++++|+..|++|++++|++...+.++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5 8999999999999999999877665543
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.35 E-value=1.2e-12 Score=119.19 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=116.4
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCc---------------hhHHHHHHH
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----GGT---------------MELHALNVQ 144 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~---------------~~~~~~~a~ 144 (292)
+++++|+..++..+.. .|++...+..+|.+++..|++++|+..|++ |.+ ..++..+|.
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555 677888888899999999999999998887 555 578889999
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 022777 145 IFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE 224 (292)
Q Consensus 145 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 224 (292)
+|..+|++++|+..++++++++|++....+..+.+++.. +++++|+..|+++++.+|+++.++..++.++...|++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986666666665544 569999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHh
Q 022777 225 AEG-LLLDALN 234 (292)
Q Consensus 225 A~~-~~~~al~ 234 (292)
|.+ .+++.+.
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 874 4444443
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.33 E-value=4.5e-12 Score=110.89 Aligned_cols=156 Identities=10% Similarity=0.065 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhC
Q 022777 70 PLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKM 149 (292)
Q Consensus 70 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~ 149 (292)
....+..++..+...|++++|+..|++++.. .|++. .+...|++.++...+.. .++..+|.+|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~--------~~~~~~~~~~~~~~l~~----~~~~nla~~~~~~ 243 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF--------MFQLYGKYQDMALAVKN----PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH--------HHTCCHHHHHHHHHHHT----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch--------hhhhcccHHHHHHHHHH----HHHHHHHHHHHHc
Confidence 3455777888888888888888888888877 67654 23455666666665532 4788999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 022777 150 HRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC-CMHMGNFDEAEGL 228 (292)
Q Consensus 150 ~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~ 228 (292)
|++++|+..++++++.+|++....+..+.++.. .|++++|+..|++++...|+++.++..++.+ ....++.+++...
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~--~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE--LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997666666655554 4679999999999999999999999999998 5567788889999
Q ss_pred HHHHHhhCCCCHH
Q 022777 229 LLDALNKDAKDPE 241 (292)
Q Consensus 229 ~~~al~~~p~~~~ 241 (292)
|.+++...|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999999875
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=2.5e-11 Score=97.01 Aligned_cols=150 Identities=12% Similarity=0.029 Sum_probs=101.0
Q ss_pred CCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-----------CCchhHHHHHHHHHHhCCC
Q 022777 83 SPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-----------GGTMELHALNVQIFLKMHR 151 (292)
Q Consensus 83 ~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------~~~~~~~~~~a~~~~~~~~ 151 (292)
..|++++|...++.+... .+....++..+|.++...|++++|+..+++ +....++..+|.++...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 357788887754444433 335677888888888888888888888876 1223456677888888888
Q ss_pred hHHHHHHHHHHHhh---CCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC--CCC----HHHHHHHHHHHHh
Q 022777 152 SDYAERQLRAMQQI---DEDHT----LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY--PMT----GLILNGKAVCCMH 218 (292)
Q Consensus 152 ~~~A~~~l~~~~~~---~p~~~----~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~la~~~~~ 218 (292)
+++|+..++++++. .+++. ......+.++.. .|++++|+..+++++... ..+ ..++..+|.++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 88888888888876 44321 222233333333 356888888888876542 122 2356788999999
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 022777 219 MGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 219 ~g~~~~A~~~~~~al~~~ 236 (292)
.|++++|+..+++++.+.
T Consensus 160 ~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999888763
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=1.6e-11 Score=98.19 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=112.7
Q ss_pred HHhcCCHHHHHH---Hhhc-C-CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHhcc
Q 022777 117 FMHEEDYNEALK---HTNA-G-GTMELHALNVQIFLKMHRSDYAERQLRAMQQID------EDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 117 ~~~~g~~~~A~~---~~~~-~-~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~------p~~~~~~l~~a~~~l~~~~ 185 (292)
++..|++++|.. .+.. + ....++..+|.++...|++++|+..++++++.. |.........+.++.. .
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM--A 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--T
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--c
Confidence 457899999999 6655 3 456788899999999999999999999999852 2222233333444433 4
Q ss_pred ccHHHHHHHHHHhHhh---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHH----HHHHHHHHHHh
Q 022777 186 SKIQEAYLIFQDFSEK---YPMT----GLILNGKAVCCMHMGNFDEAEGLLLDALNKD--AKDPE----TLANLVVCSLH 252 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~l~~~~~~ 252 (292)
|++++|+..+++++.. .|++ +.++..+|.++...|++++|+..+++++.+. .+++. ++.++|.++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 6799999999998876 5543 4579999999999999999999999999763 23332 35789999999
Q ss_pred cCCc--HHHHHHHHHhhC
Q 022777 253 QGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 253 ~g~~--a~~~~~~~~~~~ 268 (292)
.|++ |.++++++.++.
T Consensus 160 ~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 9998 888888888753
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=2e-11 Score=108.14 Aligned_cols=117 Identities=16% Similarity=0.020 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQ----------------IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~----------------~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
.+..+|..+...|++++|+..|+++++ .+|.+.......+.+++. .+++++|+..++++++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--MSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHh
Confidence 455667777777777777777777776 444444444444444433 34577777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777666555443
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=7.7e-11 Score=110.02 Aligned_cols=156 Identities=8% Similarity=-0.013 Sum_probs=138.2
Q ss_pred CCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCC----------hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q 022777 121 EDYNEALKHTNA-----GGTMELHALNVQIFLKMHR----------SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 121 g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~----------~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 185 (292)
...++|+..+++ |++..++..++.++...|+ +++++..++++++.+|.+...+...+|+....+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 445678888887 8999999999999999988 9999999999999999999888888887655543
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----------
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG-NFDEAEGLLLDALNKDAKDPETLANLVVCSLHQ----------- 253 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------- 253 (292)
.++++++..+.++++.+|.+..+|...++++...| .++++++.+.++++.+|.|..+|.+.+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 36899999999999999999999999999999999 999999999999999999999999999988764
Q ss_pred ---CCc--HHHHHHHHHhhCCCChhHHh
Q 022777 254 ---GKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 254 ---g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
+.. +.+++.+++..+|+|+.+-.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 222 78899999999999986544
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.30 E-value=1.8e-11 Score=89.27 Aligned_cols=83 Identities=13% Similarity=-0.058 Sum_probs=61.5
Q ss_pred HHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 190 EAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 190 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++++|.++...|++ |...++++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777777777777777777777777777777777776 77777777777
Q ss_pred CCCCh
Q 022777 268 HPDHM 272 (292)
Q Consensus 268 ~P~~~ 272 (292)
.|++.
T Consensus 83 ~~~~~ 87 (115)
T 2kat_A 83 AQSRG 87 (115)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 66543
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.28 E-value=8.3e-11 Score=86.62 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=84.1
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCc
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD-------PETLANLVVCSLHQGKS 256 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~ 256 (292)
..|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++...|++ +.+++++|.++...|++
T Consensus 16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 34679999999999999999999999999999999999999999999999999887 89999999999999998
Q ss_pred --HHHHHHHHHhhCCCChhHH
Q 022777 257 --TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 257 --a~~~~~~~~~~~P~~~~~~ 275 (292)
|.++++++.+..|+ +.+.
T Consensus 96 ~~A~~~~~~~~~~~~~-~~~~ 115 (131)
T 1elr_A 96 KDAIHFYNKSLAEHRT-PDVL 115 (131)
T ss_dssp HHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHHHHHHHhCCC-HHHH
Confidence 99999999999994 5433
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=1e-12 Score=120.43 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLN 180 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 180 (292)
.+..+..+|.++...|++++|+..|++ |.+..++..+|.++..+|++++|+..++++++.+|++.......+.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344445566666677777777777765 566677777777777777788888888888888888765555555554
Q ss_pred HHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q 022777 181 LAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC--CMHMGNFDEAEGLLL-----------DALNKDAKD 239 (292)
Q Consensus 181 l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 239 (292)
.. .|++++|+..|+++++..|+++.++..++.+ +...|++++|+..++ +++.++|+.
T Consensus 85 ~~--~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MA--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HH--HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 44 3568888888888888888888888888888 888899999999998 888777765
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=4e-10 Score=100.81 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=140.0
Q ss_pred chhhhhhhhhhccHHHHHhh-ccCCCCCCch----------------HHHHHHHHHHHHHhhCChhHHHHhhhhc-----
Q 022777 9 HLFNLRNNFYLGAYQAAINN-SDLTNLPPDD----------------AVERDCLVYRSYIALGSYQLVISEIDES----- 66 (292)
Q Consensus 9 ~~~~~~~~~~~g~~~~Ai~~-~~~~~~~p~~----------------~~~a~~~la~~~~~~g~~~~Al~~~~~a----- 66 (292)
.+-.++.++..|+|++|++. .++++..|.. ...++..+|.+|...|++++|+..++++
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45577788999999999998 4444433321 2346778999999999999999999876
Q ss_pred CCch----HHHHHHHHHhhcCCCChhHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------
Q 022777 67 AATP----LQAVKLLALYLSSPDNKESTISSLKEWLSD----PAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------ 132 (292)
Q Consensus 67 ~~~~----~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 132 (292)
..+. ......++.++...|++++++..+++++.. +..+.....+..+|.++...|++++|+..+.+
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 1122 123445777777889999999998887642 11455578889999999999999999999986
Q ss_pred -----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC---CCcH--HHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 133 -----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID---EDHT--LTQLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 133 -----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~---p~~~--~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
+...+++..++.+|...|++++|...+++++... +++. ...+......+....+++.+|...|.+++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2235578889999999999999999999998763 3322 1111111112233457899999999887653
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=1.6e-09 Score=102.92 Aligned_cols=212 Identities=12% Similarity=-0.033 Sum_probs=160.5
Q ss_pred HHHHHHHHhhcCCC-C------hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHH-HHhhc-----CCchhH
Q 022777 72 QAVKLLALYLSSPD-N------KESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEAL-KHTNA-----GGTMEL 138 (292)
Q Consensus 72 ~a~~~la~~~~~~~-~------~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~-----~~~~~~ 138 (292)
..|.....+....+ . .+....+|++++.. .|.++..|+..|..+...|+.++|. .+|++ |.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 34555555544322 1 23455789999988 8999999999999999999999997 88887 777778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhC-----------CCc---------HHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 139 HALNVQIFLKMHRSDYAERQLRAMQQID-----------EDH---------TLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 139 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~-----------p~~---------~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
+...+.+....|++++|..+|++++... |.+ ....+...++.+....+..+.|+.+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889999999999999999999999752 431 01111222333333345699999999999
Q ss_pred Hhh-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhH
Q 022777 199 SEK-YPMTGLILNGKAVCCMHMGN-FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 199 ~~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~ 274 (292)
++. .+....++...|.+..+.++ ++.|.++|+++++..|+++..|..++......|+. |+.+|++++...|+....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 987 44556778777888777755 99999999999999999999998888888888887 999999999988863344
Q ss_pred HhHHhhHHHHH
Q 022777 275 KRASSGDESFE 285 (292)
Q Consensus 275 ~~~~~~~~~~~ 285 (292)
..+...--+|+
T Consensus 541 ~~lw~~~~~fE 551 (679)
T 4e6h_A 541 KMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.19 E-value=2.9e-10 Score=100.66 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHHHhHh----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 184 GGSKIQEAYLIFQDFSE----------------KYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
..+++++|+..|++++. ..|.++.+++++|.++.++|++++|+..++++++++|+++.+++++|
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 314 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA 314 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35679999999999998 77888899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCc--HHHHHHHHHhhCCCChhHHh----HHhhHHHHHHHHhh
Q 022777 248 VCSLHQGKS--TSRYLNQLKLTHPDHMLVKR----ASSGDESFERALQS 290 (292)
Q Consensus 248 ~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~----~~~~~~~~~~~~~~ 290 (292)
.++...|++ |.+.++++++++|+++.+.. +....++++++.+.
T Consensus 315 ~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 315 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 99999999999999987554 35556666666544
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.9e-10 Score=101.68 Aligned_cols=172 Identities=9% Similarity=-0.016 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHh
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMH 119 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~ 119 (292)
.+-.|+.+...|++++|+..+.++ .+..... ....+........ ...++..+|.+|..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~------------~~~al~~l~~~y~~ 67 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSA-------AAGASVDDKRRNE------------QETSILELGQLYVT 67 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSB-------SSSSSBCSHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchh-------HHHHHHHHHHhhh------------HHHHHHHHHHHHHH
Confidence 455677777888888888777765 2211100 0000000111110 11234455555555
Q ss_pred cCCHHHHHHHhhc-----CCch------hHHHHHHHHHHhCCChHHHHHHHHHHHhhCC---Cc---HHHHHHHHHHHHH
Q 022777 120 EEDYNEALKHTNA-----GGTM------ELHALNVQIFLKMHRSDYAERQLRAMQQIDE---DH---TLTQLANAWLNLA 182 (292)
Q Consensus 120 ~g~~~~A~~~~~~-----~~~~------~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p---~~---~~~~l~~a~~~l~ 182 (292)
.|++++|++.+.+ +... .+...++.++...|++++|+..+++++...+ +. ......++.++
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-- 145 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH-- 145 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH--
Confidence 5665555555554 1100 1122334444555555666555555554311 11 11111112222
Q ss_pred hccccHHHHHHHHHHhHhh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 183 VGGSKIQEAYLIFQDFSEK------YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 183 ~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
...|++.+|..++++++.. .|....++..+|.++...|++++|...|++++..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2234466666655555432 1222345555666666666666666666665544
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.16 E-value=9.4e-11 Score=83.58 Aligned_cols=73 Identities=12% Similarity=-0.049 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhH
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLV 274 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~ 274 (292)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++ |.+.+++++++.|+++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 5667777777777777777777777777777777777777777777777777776 677777777666554443
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=5.6e-10 Score=77.12 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQG 254 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 254 (292)
.+++++|+..|++++...|+++.+++.+|.++...|++++|+..|++++.++|+++.++.+++.++...|
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4679999999999999999999999999999999999999999999999999999999999999887654
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.16 E-value=4.3e-10 Score=85.59 Aligned_cols=131 Identities=8% Similarity=-0.053 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc-----C--Cc----hhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC---cH-
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA-----G--GT----MELHALNVQIFLKMHRSDYAERQLRAMQQIDED---HT- 170 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~-----~--~~----~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~---~~- 170 (292)
...++..+|.++...|++++|+..+++ + .+ ..++..+|.++...|++++|+..++++++..+. ..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 345667777777777777777777776 1 11 125666777777888888888888777765322 11
Q ss_pred --HHHHHHHHHHHHhccccHHHHHHHHHHhHhhC---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 171 --LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKY---PM---TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 171 --~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~---p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
......+.++. ..|++++|+..+++++... ++ .+.++..+|.++...|++++|+..+++++++.+.
T Consensus 88 ~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYT--LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 11122222222 2355777777777765442 11 2456777788888888888888888887766443
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.14 E-value=5.4e-10 Score=85.06 Aligned_cols=132 Identities=6% Similarity=-0.088 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCc---H---HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC-----
Q 022777 137 ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDH---T---LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT----- 205 (292)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~---~---~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~----- 205 (292)
.++..+|.++...|++++|+..++++++..|.. . ......+.++. ..|++++|+..+++++...+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 356788999999999999999999999874322 1 12223333333 3467999999999988764332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCC
Q 022777 206 -GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAK------DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPD 270 (292)
Q Consensus 206 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~ 270 (292)
+.++..+|.++...|++++|+..+++++...+. ...++.+++.++...|++ |.++++++.++.++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999977322 245678899999999998 99999988876443
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=6e-10 Score=81.08 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
++|+..|+++++.+|++.......+.++.. .|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAE--HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357889999999999998777776666554 467999999999999999999999999999999999999999999999
Q ss_pred HhhCCC--CHHHHHHHHHHH
Q 022777 233 LNKDAK--DPETLANLVVCS 250 (292)
Q Consensus 233 l~~~p~--~~~~~~~l~~~~ 250 (292)
+.+.|. +......+...+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHH
Confidence 999885 344444444433
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.5e-10 Score=83.24 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCc-
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD------PETLANLVVCSLHQGKS- 256 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~- 256 (292)
..|++++|+..|++++...|+++.+++++|.++..+|++++|+..|++++.++|++ +.++++++.++...|+.
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45679999999999999999999999999999999999999999999999999999 88899999998888765
Q ss_pred -HHHHH
Q 022777 257 -TSRYL 261 (292)
Q Consensus 257 -a~~~~ 261 (292)
+...+
T Consensus 96 ~a~~~~ 101 (111)
T 2l6j_A 96 IPVVEV 101 (111)
T ss_dssp CCSSSS
T ss_pred hhHhHH
Confidence 44433
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=1e-09 Score=83.54 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCc--HHH
Q 022777 187 KIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMG---NFDEAEGLLLDALNKD-A-KDPETLANLVVCSLHQGKS--TSR 259 (292)
Q Consensus 187 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~--a~~ 259 (292)
....+...|.+.+...|.++++.+++|+++.++. +.++++.+|+++++.+ | ++.+.+|++|..+.+.|++ |.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3566777778877888889999999999999988 6669999999999998 7 6689999999999999998 999
Q ss_pred HHHHHHhhCCCChhHHhHHhhH
Q 022777 260 YLNQLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 260 ~~~~~~~~~P~~~~~~~~~~~~ 281 (292)
+++++++++|+|..+..+++.-
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999988876543
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=3.3e-10 Score=80.03 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHhHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCcHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGL-ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN--LVVCSLHQGKSTSRYL 261 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~a~~~~ 261 (292)
.|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|+++.++++ ++. +...+
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--------a~~~~ 84 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMD--------ILNFY 84 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH--------HHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--------HHHHH
Confidence 45699999999999999999999 99999999999999999999999999999999998854 111 56667
Q ss_pred HHHHhhCCCChh
Q 022777 262 NQLKLTHPDHML 273 (292)
Q Consensus 262 ~~~~~~~P~~~~ 273 (292)
+++...+|+++.
T Consensus 85 ~~~~~~~p~~~~ 96 (99)
T 2kc7_A 85 NKDMYNQLEHHH 96 (99)
T ss_dssp CCTTHHHHCCSS
T ss_pred HHHhccCccccc
Confidence 777777777654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=4.9e-10 Score=80.42 Aligned_cols=95 Identities=7% Similarity=-0.078 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCC------HHH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMT------GLI 208 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~------~~~ 208 (292)
+.+++..+|.++...|++++|+..++++++.+|++.......+.++.. .|++++|+..|++++...|++ +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK--LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 456677888888899999999999999999988887666665655554 456999999999999999988 888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 022777 209 LNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
+..+|.++...|++++|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 89999999999988888766654
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.95 E-value=8.1e-09 Score=72.54 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 202 YPMTGLILNGKAVCCMHMGN---FDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|++ |+.+|+++++.+|.+|+...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 56777777777777765555 57777777777777777777777777777777777 77777777777777665444
Q ss_pred H
Q 022777 277 A 277 (292)
Q Consensus 277 ~ 277 (292)
+
T Consensus 82 i 82 (93)
T 3bee_A 82 I 82 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.92 E-value=9.4e-09 Score=73.01 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred hCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHH
Q 022777 165 IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD--PET 242 (292)
Q Consensus 165 ~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 242 (292)
.+|++....+.++.+++. .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|.+ ...
T Consensus 2 ~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK--HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 367777666666666554 4569999999999999999999999999999999999999999999999987653 334
Q ss_pred HHHHHHHHHh
Q 022777 243 LANLVVCSLH 252 (292)
Q Consensus 243 ~~~l~~~~~~ 252 (292)
...+..++..
T Consensus 80 ~~~l~~~l~~ 89 (100)
T 3ma5_A 80 LSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=1.2e-08 Score=71.73 Aligned_cols=78 Identities=10% Similarity=0.022 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHHhhHHHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE-TLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRASSGDESFER 286 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 286 (292)
+..|.++...|++++|+..|+++++.+|+++. +++++|.++...|++ |.+.++++++.+|+++.+... +.+.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~ 79 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----KMVMD 79 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHH
Confidence 56899999999999999999999999999999 999999999999998 999999999999999987522 55555
Q ss_pred HHhhc
Q 022777 287 ALQSV 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
++..|
T Consensus 80 a~~~~ 84 (99)
T 2kc7_A 80 ILNFY 84 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.92 E-value=1.8e-08 Score=69.30 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHH
Q 022777 135 TMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAV 214 (292)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 214 (292)
+..++..+|.++...|++++|+..++++++.+|++.......+.++.. .+++++|+..|++++..+|+++.++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 455677778888888888888888888888888876555555555444 456888888888888888888888888888
Q ss_pred HHHhcC
Q 022777 215 CCMHMG 220 (292)
Q Consensus 215 ~~~~~g 220 (292)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 887654
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.88 E-value=2e-07 Score=78.27 Aligned_cols=175 Identities=11% Similarity=0.118 Sum_probs=117.5
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCC---------------------HHHHHHHhhcCCchhHHHHHHHHHHhC
Q 022777 91 ISSLKEWLSDPAIGSNATLRLIAGIIFMHEED---------------------YNEALKHTNAGGTMELHALNVQIFLKM 149 (292)
Q Consensus 91 ~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~~~~~~~~~~~a~~~~~~ 149 (292)
+..++-++.. +|++.......|.+|..=+. +..|.+.|.+... +..++ +....
T Consensus 52 Lk~~e~Ll~~--~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~---y~~ra-L~~~~ 125 (301)
T 3u64_A 52 LKVYEALHLQ--NPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR---YALSS-LETAY 125 (301)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHS
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH---HHHHH-HHHhC
Confidence 4556666666 88888887777776653321 2234444443111 11111 11222
Q ss_pred CChHHHHH-----HHHHHH-hhCCCcH--HHHHHHHHHHHHh---c----cccHHHHHHHHHHhHhhCCC--CHHHHHHH
Q 022777 150 HRSDYAER-----QLRAMQ-QIDEDHT--LTQLANAWLNLAV---G----GSKIQEAYLIFQDFSEKYPM--TGLILNGK 212 (292)
Q Consensus 150 ~~~~~A~~-----~l~~~~-~~~p~~~--~~~l~~a~~~l~~---~----~~~~~~A~~~~~~~~~~~p~--~~~~~~~l 212 (292)
..+.+++. .+.+++ +.+|++. +.+.+.+|..... + .+...+|...++++++.+|+ +..+|..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~L 205 (301)
T 3u64_A 126 PGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVL 205 (301)
T ss_dssp TTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred ccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 33332222 223333 3467765 3444545544321 1 14578999999999999999 67799999
Q ss_pred HHHHHhc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhc-CCc--HHHHHHHHHhhCCCC
Q 022777 213 AVCCMHM-----GNFDEAEGLLLDALNKDAKD-PETLANLVVCSLHQ-GKS--TSRYLNQLKLTHPDH 271 (292)
Q Consensus 213 a~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~-g~~--a~~~~~~~~~~~P~~ 271 (292)
|.+|... |+.++|+++|+++++++|+. .++++.+|..+... |++ +.+++++++...|..
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999996 99999999999999999975 99999999998875 776 899999999988774
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.80 E-value=6.8e-08 Score=88.37 Aligned_cols=125 Identities=9% Similarity=0.027 Sum_probs=89.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhh-----CCCcHHH-HHHHHHHHHHhccccHHHHHHHHHHhHhh-----CCCCH---HH
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQI-----DEDHTLT-QLANAWLNLAVGGSKIQEAYLIFQDFSEK-----YPMTG---LI 208 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~-----~p~~~~~-~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~ 208 (292)
+..+..+|++++|+..+++++++ .|+|+.. ........++...|+|++|..++++++.. .|++| ..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34467889999999999999875 4666422 11112222334457799999999887642 45554 57
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 209 LNGKAVCCMHMGNFDEAEGLLLDALNK-----DAKDPETL---ANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
++++|.++..+|++++|+.+|++|+.+ .|++|.+. .+++.++..++++ +..+++++++.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999875 68888664 4566777777776 77777776653
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.79 E-value=7e-07 Score=77.86 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=100.9
Q ss_pred CCchhHHH--HHHHHHHhCCC---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-cc-----ccHHHHHHHHHH--hH
Q 022777 133 GGTMELHA--LNVQIFLKMHR---SDYAERQLRAMQQIDEDHTLTQLANAWLNLAV-GG-----SKIQEAYLIFQD--FS 199 (292)
Q Consensus 133 ~~~~~~~~--~~a~~~~~~~~---~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~-----~~~~~A~~~~~~--~~ 199 (292)
|.+++++- +.|.-++..+. ..+|+.+|+++++++|+.....-..+++++.. .. .........++. .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 66666643 44555554443 47899999999999999865554444444321 10 111111112222 33
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChh
Q 022777 200 EKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 200 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~ 273 (292)
...|.++.++..+|..+...|++++|+..+++++.++|+ ...+..+|.++...|++ |.+.+.++..++|..+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 567999999999999999999999999999999999975 66777889999999998 99999999999998873
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.79 E-value=6.3e-08 Score=73.10 Aligned_cols=61 Identities=11% Similarity=-0.052 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMH----MGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
+++|+..|+++.+. .++.+.+.+|.++.. .+++++|+..|+++.+. +++.+.+++|.+|..
T Consensus 41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 44444444444443 334444444444444 44444444444444443 344444444444443
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.78 E-value=2.9e-08 Score=89.35 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=85.0
Q ss_pred cccHHHHHHHHHHhHh-----hCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHH---HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSE-----KYPMTG---LILNGKAVCCMHMGNFDEAEGLLLDALNK-----DAKDPET---LANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~~ 248 (292)
.|+|++|+.++++++. ..|++| ..++++|.+|..+|+|++|+.++++++.+ .|++|++ +.|+|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4689999999999875 356665 57889999999999999999999999976 6888875 678999
Q ss_pred HHHhcCCc--HHHHHHHHHhh-----CCCChhHHhHHhhHHH
Q 022777 249 CSLHQGKS--TSRYLNQLKLT-----HPDHMLVKRASSGDES 283 (292)
Q Consensus 249 ~~~~~g~~--a~~~~~~~~~~-----~P~~~~~~~~~~~~~~ 283 (292)
+|..+|++ |..++++++++ .|+||.+.++..+.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 99999998 99999998884 7999999998776543
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=1.2e-07 Score=86.64 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHHhHhh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHH---HHHHH
Q 022777 184 GGSKIQEAYLIFQDFSEK-----YPMTG---LILNGKAVCCMHMGNFDEAEGLLLDALNK-----DAKDPET---LANLV 247 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~ 247 (292)
.+|+|++|+.++++++.. .|++| ..++++|.+|..+|+|++|+.++++++.+ .|++|++ +.|||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468899999999998753 45555 68999999999999999999999999976 6888875 67899
Q ss_pred HHHHhcCCc--HHHHHHHHHh-----hCCCChhHHhHHhhHHH
Q 022777 248 VCSLHQGKS--TSRYLNQLKL-----THPDHMLVKRASSGDES 283 (292)
Q Consensus 248 ~~~~~~g~~--a~~~~~~~~~-----~~P~~~~~~~~~~~~~~ 283 (292)
.+|..+|++ |..+++++++ +.|+||.+.++..+..+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 443 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQ 443 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999998 9999999887 47999998887554443
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=3.3e-07 Score=69.11 Aligned_cols=119 Identities=8% Similarity=-0.154 Sum_probs=95.5
Q ss_pred CCHHHHHHHhhc---CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---cccHHHHHHH
Q 022777 121 EDYNEALKHTNA---GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG---GSKIQEAYLI 194 (292)
Q Consensus 121 g~~~~A~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~---~~~~~~A~~~ 194 (292)
+++++|+.+|++ ..++.+. ++.+|...+.+++|...|+++.+... ......++.++.. + .+++++|+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~--~~a~~~Lg~~y~~-G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNS--GNGCRFLGDFYEN-GKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH-CSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHc-CCCCCccHHHHHHH
Confidence 578999999998 4666666 99999999999999999999998743 3333344444433 2 4679999999
Q ss_pred HHHhHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 195 FQDFSEKYPMTGLILNGKAVCCMH----MGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 195 ~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
|+++.+. .++.+.+.+|.++.. .+++++|+..|+++.+. +++++..+++.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 9999886 678999999999999 99999999999999986 56777776653
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=1.9e-07 Score=71.03 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHhHhhC-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 152 SDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG-GSKIQEAYLIFQDFSEKY-P-MTGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 152 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
...+++.|.+.++.+|.+....+-.+|+....+ .+.+++++.+++++++.. | ++.+.++.+|..++++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888877877777888888877643 246889999999999998 7 5688999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 022777 229 LLDALNKDAKDPETLANLVVC 249 (292)
Q Consensus 229 ~~~al~~~p~~~~~~~~l~~~ 249 (292)
++++|+++|+|..+..-.-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999887554433
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.68 E-value=4.6e-06 Score=76.53 Aligned_cols=157 Identities=10% Similarity=-0.062 Sum_probs=94.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC---------CHHHHHHHhhc------CCchhHH
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEE---------DYNEALKHTNA------GGTMELH 139 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~------~~~~~~~ 139 (292)
..+...+.+.|+.++|+.+|.++...|..|+ ...+..+-.++...+ ..++|..+|++ .++...+
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344555666777777777777776665554 333333333444333 25667777665 3455566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh-CCCCHHHHHHHHHHH
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQI--DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK-YPMTGLILNGKAVCC 216 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~ 216 (292)
..+...|.+.|++++|..+++++.+. .|+..... . .+..+...|++++|..+|+++.+. ...+...++.+-.++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn-~--lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG-P--ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH-H--HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh-H--HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 66667777777777777777777664 35542111 1 111122345677777777777654 223455677777777
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 022777 217 MHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~ 235 (292)
.+.|++++|.++|++.-+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHh
Confidence 7888888888887776543
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=9.6e-07 Score=80.97 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=137.5
Q ss_pred HHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCC-HHHHHHHhhc--
Q 022777 59 VISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEED-YNEALKHTNA-- 132 (292)
Q Consensus 59 Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~-- 132 (292)
+...|+++ .|.....|...+.++...|+.++|..+|++++.. |.+...++..+... ..++ ++.....+..
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~-e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVM-DEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHT-TCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhc-chhHHHHHHHHHHHhhc
Confidence 44566666 4556778888888888889999999999999975 87777776655431 1111 1121111100
Q ss_pred ---------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCC
Q 022777 133 ---------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYP 203 (292)
Q Consensus 133 ---------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p 203 (292)
+.....+...+....+.+..+.|..+|.++ ...+......+..+.+-...+ ++.+.|..+|+.+++..|
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHCT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCC
Confidence 112244666667777788899999999999 443333333333232222222 248999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 204 MTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+++..+...+......|+.+.|...|+++ +....+|......-...|+. +.+++++..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999888999999999999999999997 45677887777777777886 6676766664
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.64 E-value=1.9e-07 Score=65.40 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 166 DEDHTLTQLANAWLNLAVGG-SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
+|+++......+.+.+..+. ...++|...+++++..+|+++.+++.+|..+++.|+|++|+..++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46666555555555443332 33689999999999999999999999999999999999999999999999998543
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.8e-05 Score=72.47 Aligned_cols=151 Identities=8% Similarity=-0.089 Sum_probs=91.0
Q ss_pred hccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCC-hhHHHHhhhhc------CCchHHHHHHHHHhhcC----CCC
Q 022777 19 LGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGS-YQLVISEIDES------AATPLQAVKLLALYLSS----PDN 86 (292)
Q Consensus 19 ~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~-~~~Al~~~~~a------~~~~~~a~~~la~~~~~----~~~ 86 (292)
.|+++.+...++ ++..-|+ ++.+......-.+.|. .+.....|+.+ ++.+...|...+.++.. +++
T Consensus 27 ~~~~e~~~~iferal~~~ps--~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKKSYN--LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TTCHHHHHHHHHHHSTTCCC--HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCCHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 489999999854 6666674 5666655555555553 23344455543 34556778888877653 245
Q ss_pred hhHHHHHHHHHhcCCCCCccHHHH-HHH----------------------------------------------HHHHHh
Q 022777 87 KESTISSLKEWLSDPAIGSNATLR-LIA----------------------------------------------GIIFMH 119 (292)
Q Consensus 87 ~~~A~~~~~~~l~~~~~p~~~~~~-~~l----------------------------------------------a~~~~~ 119 (292)
.+.+..+|++++.. .+.+..-+ ... .-+-+.
T Consensus 105 ~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 105 IEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 67888899999874 22221111 100 000111
Q ss_pred cCC---------HHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHH
Q 022777 120 EED---------YNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQL 174 (292)
Q Consensus 120 ~g~---------~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l 174 (292)
.++ .+.....|++ |..+..+...+..+...|+++.|..+|++++.. |.+...++
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 111 1223344444 677888888888888999999999999999988 88754443
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.59 E-value=6.4e-06 Score=75.61 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhc----CCchHHHHHHHHHhhcCCC---------ChhHHHHHHHHHhcCCCCCccHHH
Q 022777 43 DCLVYRSYIALGSYQLVISEIDES----AATPLQAVKLLALYLSSPD---------NKESTISSLKEWLSDPAIGSNATL 109 (292)
Q Consensus 43 ~~~la~~~~~~g~~~~Al~~~~~a----~~~~~~a~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~p~~~~~ 109 (292)
+..+-..+.+.|+.++|+..|++. ..|+..++..|...+...+ +.+.|.+++.++...+..|+ ...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HHH
Confidence 344557788999999999999864 5677777776665554332 36889999999998886675 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhc------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh--CCCcHHHHHHHHHHHH
Q 022777 110 RLIAGIIFMHEEDYNEALKHTNA------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI--DEDHTLTQLANAWLNL 181 (292)
Q Consensus 110 ~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l 181 (292)
+..+-..|.+.|++++|+.+|++ .++...+..+...|.+.|++++|..+++++.+. .|+..... +.+..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~---~Li~~ 184 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA---ALLKV 184 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH---HHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHH
Confidence 78888899999999999999987 356677888888999999999999999999876 56654211 12223
Q ss_pred HhccccHHHHHHHHHHhHhh--CCCCH
Q 022777 182 AVGGSKIQEAYLIFQDFSEK--YPMTG 206 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~p~~~ 206 (292)
+...|++++|..+++++.+. .|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 33457899999999998764 45543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.57 E-value=5.2e-07 Score=81.22 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=85.4
Q ss_pred cccHHHHHHHHHHhHhh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHH---HHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEK-----YPMTG---LILNGKAVCCMHMGNFDEAEGLLLDALNK-----DAKDPET---LANLVV 248 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~~ 248 (292)
+|++++|+..++++++. .|+++ ..+.++|.++..+|+|++|+.++++++.+ .|++|++ ++++|.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 46899999999998753 45565 58899999999999999999999999976 6888875 678999
Q ss_pred HHHhcCCc--HHHHHHHHHhh-----CCCChhHHhHHhhHHHHH
Q 022777 249 CSLHQGKS--TSRYLNQLKLT-----HPDHMLVKRASSGDESFE 285 (292)
Q Consensus 249 ~~~~~g~~--a~~~~~~~~~~-----~P~~~~~~~~~~~~~~~~ 285 (292)
+|..+|++ |..++++++++ .|+||.+.++..+..+-.
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999998 99999988874 799999999876665543
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.56 E-value=5.3e-07 Score=66.17 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCc--HHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDE---AEGLLLDALNKD-A-KDPETLANLVVCSLHQGKS--TSRY 260 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~--a~~~ 260 (292)
...+...|.+.+...+.+++..|++||++.+..+..+ ++.+++..+..+ | ..-+.+|.+|..+.+.|++ |.++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5566667777777777888899999999999888877 888899888876 5 4667888899988899998 8899
Q ss_pred HHHHHhhCCCChhHHhHHhhH
Q 022777 261 LNQLKLTHPDHMLVKRASSGD 281 (292)
Q Consensus 261 ~~~~~~~~P~~~~~~~~~~~~ 281 (292)
.+.+++..|+|+.+.++...-
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999888876543
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.56 E-value=2.2e-06 Score=74.76 Aligned_cols=132 Identities=12% Similarity=-0.041 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 86 NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 86 ~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
+..+|+..|+++++. +|+++.++-.++.++. ...... +........ ...+.... ..+..
T Consensus 214 ~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~-------~~~~~~-~~~~~~~~~----------l~~a~~a~-~a~~~ 272 (372)
T 3ly7_A 214 SLNRASELLGEIVQS--SPEFTYARAEKALVDI-------VRHSQH-PLDEKQLAA----------LNTEIDNI-VTLPE 272 (372)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH-------HHHHHS-CCCHHHHHH----------HHHHHHHH-HTCGG
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-------HHhccC-CCchhhHHH----------HHHHHHHH-Hhccc
Confidence 357888888888888 8888888888888776 111111 111110000 02222211 22345
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPE 241 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (292)
+|.+.....+.+...+.. |++++|+..+++++.++| +...+..+|.++...|++++|+..|++|+.++|..+.
T Consensus 273 ~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 677776666655555543 679999999999999997 4778899999999999999999999999999999764
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.41 E-value=4.7e-06 Score=59.41 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 203 PMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 203 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
+..+.++..+|.++.++|++++|+.+++++++++|+++.++.|+..
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence 4567889999999999999999999999999999999999888874
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.39 E-value=2.2e-06 Score=77.15 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=73.3
Q ss_pred hCCChHHHHHHHHHHHhh-----CCCcHHH-HHHHHHHHHHhccccHHHHHHHHHHhHhh-----CCCCH---HHHHHHH
Q 022777 148 KMHRSDYAERQLRAMQQI-----DEDHTLT-QLANAWLNLAVGGSKIQEAYLIFQDFSEK-----YPMTG---LILNGKA 213 (292)
Q Consensus 148 ~~~~~~~A~~~l~~~~~~-----~p~~~~~-~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~la 213 (292)
..|++++|+..+++++++ .|+|+.. ........++...|+|++|+.++++++.. .|++| ..++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999885 5777522 11111122334457899999999998752 45555 5799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 022777 214 VCCMHMGNFDEAEGLLLDALNK-----DAKDPETL 243 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 243 (292)
.++..+|++++|+.+|++|+++ .|++|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999986 68888765
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.36 E-value=5.7e-06 Score=58.94 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHH
Q 022777 205 TGLILNGKAVCCMHMGNFDEAEGLLLDALNKD-------AKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVK 275 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~ 275 (292)
++.-.+.+|..++..|+|..|+..|++|++.. +..++++.++|.++.+.|+. |..++++++++.|+|+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45567889999999999999999999999863 35678899999999999998 9999999999999998874
Q ss_pred h
Q 022777 276 R 276 (292)
Q Consensus 276 ~ 276 (292)
.
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.26 E-value=1.7e-05 Score=71.29 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=78.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhh-----CCCcHHH-HHHHHHHHHHhccccHHHHHHHHHHhHhh-----CCCCH---HHH
Q 022777 144 QIFLKMHRSDYAERQLRAMQQI-----DEDHTLT-QLANAWLNLAVGGSKIQEAYLIFQDFSEK-----YPMTG---LIL 209 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~-----~p~~~~~-~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~ 209 (292)
.-+..+|++++|+..+++++++ .|+|+.. ........++...|+|++|+..+++++.. .|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3456789999999999999975 5666522 11111122233457799999999998742 45555 578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNK-----DAKDPETL---ANLVVCS 250 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~ 250 (292)
+++|.++..+|++++|+.+|++|+++ .|++|.+. .+|+.+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999976 78988765 3444444
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.19 E-value=2.2e-05 Score=57.55 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHhHhhC-C-CCHHHHHHHHHHHHhcCCHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG-GSKIQEAYLIFQDFSEKY-P-MTGLILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 227 (292)
....+...|.+....++.+....+..+|..+... .....+++.++..++... | ..-+.++.+|..+.++|+|++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456677777777777777777888888877543 245677999999999876 5 466799999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 022777 228 LLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 228 ~~~~al~~~p~~~~~~~~l~ 247 (292)
+++..|+.+|+|..+..-..
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998874433
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.08 E-value=4.6e-05 Score=63.99 Aligned_cols=107 Identities=11% Similarity=-0.094 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHHh-----CC------ChHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHh---ccccHHHHHHHHH
Q 022777 133 GGTMELHALNVQIFLK-----MH------RSDYAERQLRAMQQIDEDHT--LTQLANAWLNLAV---GGSKIQEAYLIFQ 196 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~-----~~------~~~~A~~~l~~~~~~~p~~~--~~~l~~a~~~l~~---~~~~~~~A~~~~~ 196 (292)
++++++++..|.+... .| ....|...++++++++|+.. .....++.++... +.|+.++|...|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 5566666655543322 12 24678999999999999943 2333333333321 2377999999999
Q ss_pred HhHhhCCCC-HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC
Q 022777 197 DFSEKYPMT-GLILNGKAVCCMH-MGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 197 ~~~~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 239 (292)
++++.+|+. ...++.+|..++. .|++++|.+.+++++..+|..
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999975 9999999999988 599999999999999998873
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.01 E-value=0.00027 Score=53.05 Aligned_cols=123 Identities=14% Similarity=0.035 Sum_probs=90.2
Q ss_pred CCchhHHHHHHHHHHhCCCh------HHHHHHHHHHHhhCCCcH---HHHHHHHHHHH--HhccccHHHHHHHHHHhHhh
Q 022777 133 GGTMELHALNVQIFLKMHRS------DYAERQLRAMQQIDEDHT---LTQLANAWLNL--AVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~------~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l--~~~~~~~~~A~~~~~~~~~~ 201 (292)
|.+++.+.....+....|++ ++-+..|++++..-|... ..++...|+.. ..+.++.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56666666666666666777 777788888877644321 11222223221 12346799999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 202 YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 202 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
+...+-+|...|....+.|++..|.+.+.+++...|.+.+.+ ..+..-.+.|+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~ 143 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKK 143 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCC
Confidence 888899999999999999999999999999999999987755 556666666764
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.96 E-value=0.00024 Score=52.95 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHh
Q 022777 203 PMTGLILNGKAVCCMHMGNFD---EAEGLLLDALNKDAK-DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKR 276 (292)
Q Consensus 203 p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~ 276 (292)
+.+++..|++||++.+..+.. +++.+++..+...|. .-+.+|.++..+.+.|++ |.++.+.+++..|+|..+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456667777777777766554 467777777776664 345667777777777777 77777777777777777666
Q ss_pred HHhh
Q 022777 277 ASSG 280 (292)
Q Consensus 277 ~~~~ 280 (292)
+...
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.89 E-value=0.00017 Score=53.00 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 205 TGLILNGKAVCCMHMGNFD---EAEGLLLDALNKDAK-DPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
++...+++||++.+..+.. +++.+++..++..|. .-+.+|.+++.+.+.|++ |.++.+.+++..|+|..+.++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 5666677777776666543 466666666666663 345666677666677766 6677777777777776666654
Q ss_pred h
Q 022777 279 S 279 (292)
Q Consensus 279 ~ 279 (292)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.67 E-value=0.00067 Score=49.84 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 170 TLTQLANAWLNLAVGG-SKIQEAYLIFQDFSEKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 170 ~~~~l~~a~~~l~~~~-~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
....+-.+|..+.... .+..+++.++.+++...|. .-+.++.+|..+.++|+|++|.++.+..|++.|+|..+..-..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4566677788776432 4678999999999998885 4679999999999999999999999999999999998874433
Q ss_pred H
Q 022777 248 V 248 (292)
Q Consensus 248 ~ 248 (292)
.
T Consensus 120 ~ 120 (134)
T 3o48_A 120 M 120 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.67 E-value=0.0023 Score=47.56 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=66.2
Q ss_pred CcHHHHHHHHHHHHHhc-cccHHHHHHHHHHhHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 022777 168 DHTLTQLANAWLNLAVG-GSKIQEAYLIFQDFSEKYPM-TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLAN 245 (292)
Q Consensus 168 ~~~~~~l~~a~~~l~~~-~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 245 (292)
.+....+-.+|..+... ..+..+++.+++.++...|. .-+.++.+|..+.++|+|++|.++.+..|+.+|+|..+..-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34556677788877643 35678999999999999885 55789999999999999999999999999999999887744
Q ss_pred HH
Q 022777 246 LV 247 (292)
Q Consensus 246 l~ 247 (292)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.14 E-value=0.1 Score=45.91 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc------CCch--HHHHHHHHHhhcC-CCChhHHHHHHHHHhcCCC-C-CccHH-
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES------AATP--LQAVKLLALYLSS-PDNKESTISSLKEWLSDPA-I-GSNAT- 108 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a------~~~~--~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~~-~-p~~~~- 108 (292)
.+.+.++..|...|+.++....+... .+.. ......+...+.. .+..+.-+++..+.+.-.. + .....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988888754 2222 3335556665553 3455665666666664200 1 11111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHhhc-------CC----chhHHHHHHHHHHhCCChHHHHHHHHHHHhhC----CCcH--
Q 022777 109 -LRLIAGIIFMHEEDYNEALKHTNA-------GG----TMELHALNVQIFLKMHRSDYAERQLRAMQQID----EDHT-- 170 (292)
Q Consensus 109 -~~~~la~~~~~~g~~~~A~~~~~~-------~~----~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~----p~~~-- 170 (292)
.-..+|.+|+..|+|.+|++.+.+ .+ -.+.+....++|...+++.++...+.++.... +++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 234789999999999999988876 12 23567777889999999999999999987642 3332
Q ss_pred -HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCC--CH---HHHHHHHHHHHhcCCHHHH
Q 022777 171 -LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPM--TG---LILNGKAVCCMHMGNFDEA 225 (292)
Q Consensus 171 -~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~--~~---~~~~~la~~~~~~g~~~~A 225 (292)
......+.+++. ..++|.+|...|-++.+.+.+ ++ .++..++.|.+-.++..+-
T Consensus 180 a~i~~~~Gi~~l~-~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el 239 (394)
T 3txn_A 180 GALDLQSGILHAA-DERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDV 239 (394)
T ss_dssp HHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHhhHHHHH-hccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 222333333331 456799999999988765432 22 3555567777777764443
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.041 Score=52.65 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=73.0
Q ss_pred HHHHHHhhCChhHHHH-hhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHH
Q 022777 46 VYRSYIALGSYQLVIS-EIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYN 124 (292)
Q Consensus 46 la~~~~~~g~~~~Al~-~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~ 124 (292)
.....+..+++++|.. .+....++. .+..++.++...|..+.|++.. . +| ...+ .+.+..|+++
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~----~---~~---~~~f---~~~l~~~~~~ 669 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNIS----P---DQ---DQKF---ELALKVGQLT 669 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHC----C---CH---HHHH---HHHHHHTCHH
T ss_pred HHhHHHHhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecC----C---Cc---chhe---ehhhhcCCHH
Confidence 3455567889999887 553221022 2256667777778888876543 1 22 2233 3456789999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 125 EALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
+|++..+..+++..+..+|..+++.++++.|+..|.++-
T Consensus 670 ~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 999999888888899999999999999999999998773
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.05 E-value=0.0089 Score=44.89 Aligned_cols=110 Identities=14% Similarity=-0.012 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHHHHHHHhccccH------HHHHHHHHHhHhhCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 166 DEDHTLTQLANAWLNLAVGGSKI------QEAYLIFQDFSEKYPMT--------GLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 166 ~p~~~~~~l~~a~~~l~~~~~~~------~~A~~~~~~~~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
.|.+...++. ++.+....|+. ++-+++|++++..-|.. ..+|...|.. ...++.++|...|+.
T Consensus 9 ~p~~yd~W~~--yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNPEDWLS--LLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSHHHHHH--HHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred CCCCHHHHHH--HHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 5666544443 22232323445 78888999988776653 3566677755 567999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCChhHHhHH
Q 022777 232 ALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTHPDHMLVKRAS 278 (292)
Q Consensus 232 al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~P~~~~~~~~~ 278 (292)
++.+....+-+|...|.....+|+. |.+.+.+++...|.......+.
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 9998888888999999999999987 9999999999999988766653
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.94 E-value=0.024 Score=43.47 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
.+++.++=.- ..+ -|.+++....++..+.-.|.|..++-.+.+-+.....+-.+.||.+.+++..|+..++.++.
T Consensus 16 ~dYdt~~fLs-a~L----~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 16 RDYETAIFLA-ACL----LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp TCHHHHHHHH-HHH----C----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHH-HHH----ccCChHHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666654322 222 36666788999999999999999999999888888888888999999999999999999994
Q ss_pred --h--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 165 --I--DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGL-ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 165 --~--~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
+ +|+-. .++- .. -.+|.+-+ +++.+|.++.+.|+.+||+.++.....+.|--
T Consensus 91 ~kvd~d~~~d-~~~~---------------------~f-fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 91 GKVERDPDVD-ARIQ---------------------EM-FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp TCSBCCCCCC-HHHH---------------------TT-SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cccccCcccc-cccc---------------------ee-eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 3 34421 1110 00 12355544 67778999999999999999999999998876
Q ss_pred HHH
Q 022777 240 PET 242 (292)
Q Consensus 240 ~~~ 242 (292)
+.+
T Consensus 148 ~~v 150 (242)
T 3kae_A 148 SPV 150 (242)
T ss_dssp HHH
T ss_pred chH
Confidence 544
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.0027 Score=48.52 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=81.5
Q ss_pred hhhhhhhhhhccHHHHHhhcc-CCC--------CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc------CCchHHHH
Q 022777 10 LFNLRNNFYLGAYQAAINNSD-LTN--------LPPDDAVERDCLVYRSYIALGSYQLVISEIDES------AATPLQAV 74 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~~~-~~~--------~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a------~~~~~~a~ 74 (292)
+.+++..+..|.|+.|+-..+ +.. .+|....+..+++|.++...|+|..|...|+++ .+....+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 347788899999999998743 222 234445668889999999999999999999875 12111110
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc-C---CchhHHHHHHHHH
Q 022777 75 KLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA-G---GTMELHALNVQIF 146 (292)
Q Consensus 75 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~---~~~~~~~~~a~~~ 146 (292)
..++ .+. ....-.. .+.+.+..+.+|.|+...|++.+|+..++. | .++..-..+|.+|
T Consensus 104 ~~~~--------~~s---s~p~s~~---~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTG--------NSA---STPQSQC---LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------------C---CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccc--------ccC---CCccccc---ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 0010 000 0010111 245678999999999999999999999998 3 5777777888775
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.79 E-value=0.0047 Score=47.23 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHhHhh---CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C---------------
Q 022777 185 GSKIQEAYLIFQDFSEK---YPMT------GLILNGKAVCCMHMGNFDEAEGLLLDALNKD---A--------------- 237 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~---~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--------------- 237 (292)
.+.|+.|+-....++.. +|+. ..+++.+|.+++..|+|..|...|+++|... |
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence 45577777776665543 2331 1367777888888888888888888876431 1
Q ss_pred -------CCHHHHHHHHHHHHhcCCc--HHHHHHH
Q 022777 238 -------KDPETLANLVVCSLHQGKS--TSRYLNQ 263 (292)
Q Consensus 238 -------~~~~~~~~l~~~~~~~g~~--a~~~~~~ 263 (292)
.+.++.|.++.|+...|++ |+..++.
T Consensus 113 p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1236788899999999887 6666653
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.043 Score=52.50 Aligned_cols=123 Identities=12% Similarity=0.010 Sum_probs=79.7
Q ss_pred hhhhhccHHHHHh-hccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHH
Q 022777 15 NNFYLGAYQAAIN-NSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISS 93 (292)
Q Consensus 15 ~~~~~g~~~~Ai~-~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~ 93 (292)
.....|+++.|.+ . +..+.+.. ....+++.+...|..++|+...+. +. ....++ ...|+++.|.+.
T Consensus 608 ~~~~~~~~~~a~~~~--l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~---~~--~~f~~~---l~~~~~~~A~~~ 674 (814)
T 3mkq_A 608 TLTLRGEIEEAIENV--LPNVEGKD---SLTKIARFLEGQEYYEEALNISPD---QD--QKFELA---LKVGQLTLARDL 674 (814)
T ss_dssp HHHHTTCHHHHHHHT--GGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCC---HH--HHHHHH---HHHTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHH--HhcCCchH---HHHHHHHHHHhCCChHHheecCCC---cc--hheehh---hhcCCHHHHHHH
Confidence 3456788999888 5 21222021 125567778889999999877642 21 112222 235799999777
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 022777 94 LKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLR 160 (292)
Q Consensus 94 ~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 160 (292)
.+ ..+++..|..+|..++..|+++.|+.+|.+..+... +..++...|+.+......+
T Consensus 675 ~~-------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~---l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 675 LT-------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLES---LFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HT-------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH---HHHHHHHTTCHHHHHHHHH
T ss_pred HH-------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhh---hHHHHHHcCCHHHHHHHHH
Confidence 53 345678999999999999999999999998555443 3334445666665544433
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.14 E-value=0.63 Score=40.89 Aligned_cols=218 Identities=12% Similarity=0.095 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcC-CCCCccH--HHHHHHHHHHHhc-CCHH-------HHHHHhhcCC--chh
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSD-PAIGSNA--TLRLIAGIIFMHE-EDYN-------EALKHTNAGG--TME 137 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~p~~~--~~~~~la~~~~~~-g~~~-------~A~~~~~~~~--~~~ 137 (292)
..++..|+.+|...|+.++....+...... +.-|..- ...-.+-..+... |..+ ++++|..... ...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999889998877777665322 0022221 1111222222222 3333 2333332211 111
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHhh----CCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHhHhh---CCCCH
Q 022777 138 --LHALNVQIFLKMHRSDYAERQLRAMQQI----DEDHTLT--QLANAWLNLAVGGSKIQEAYLIFQDFSEK---YPMTG 206 (292)
Q Consensus 138 --~~~~~a~~~~~~~~~~~A~~~l~~~~~~----~p~~~~~--~l~~a~~~l~~~~~~~~~A~~~~~~~~~~---~p~~~ 206 (292)
.-..++.+|...|++.+|.+.+.++.+- +...... .+....+ +...+++.++...+.++... -+.+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~--~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT--YHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH--HHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1226789999999999999999888763 2222222 2222323 33445788888888886432 12233
Q ss_pred ----HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCC--CH---HHHHHHHHHHHhcCCc--HHHHH-HHHHhhCCCChh
Q 022777 207 ----LILNGKAVCCM-HMGNFDEAEGLLLDALNKDAK--DP---ETLANLVVCSLHQGKS--TSRYL-NQLKLTHPDHML 273 (292)
Q Consensus 207 ----~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~---~~~~~l~~~~~~~g~~--a~~~~-~~~~~~~P~~~~ 273 (292)
.+...-|.+++ ..++|.+|-..|-++++.... ++ .++..++.+-...+.. ...+. .+..... .+|.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCcc
Confidence 45556688899 899999999999999865322 22 3444455665555553 33322 2221222 4565
Q ss_pred HHhHHh--------hHHHHHHHHhhc
Q 022777 274 VKRASS--------GDESFERALQSV 291 (292)
Q Consensus 274 ~~~~~~--------~~~~~~~~~~~~ 291 (292)
+..+.. ....|.+.+..|
T Consensus 256 i~~l~~L~~a~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 544332 344556666654
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.21 Score=38.66 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCc
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGT 135 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 135 (292)
|+++.|.+..+.+ ++..-|..+|...+.+|+++-|..+|.+..+
T Consensus 19 g~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 19 GNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp TCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4555555554432 1244555555555555555555555555444
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.12 Score=49.41 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
++..-+..++.+|+++-|++.-++++..-|.+...|+.|+.+|..+|++
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence 4444466666777777777777777777777777777777777777776
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.80 E-value=0.31 Score=41.34 Aligned_cols=61 Identities=10% Similarity=-0.026 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------h---hCCCCHHHHHHHHHH-HHhcCCc--HHHHH
Q 022777 204 MTGLILNGKAVCCMHMGNFDEAEGLLLDAL----------------N---KDAKDPETLANLVVC-SLHQGKS--TSRYL 261 (292)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------~---~~p~~~~~~~~l~~~-~~~~g~~--a~~~~ 261 (292)
.+|+++..+|..+.+.|++.+|+.+|-..- + -.|...+.....+++ |...|+. |.+++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 478999999999999999999999885211 1 233344544444543 5667776 66655
Q ss_pred HHH
Q 022777 262 NQL 264 (292)
Q Consensus 262 ~~~ 264 (292)
...
T Consensus 212 ~~f 214 (312)
T 2wpv_A 212 DIF 214 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.20 E-value=0.6 Score=38.57 Aligned_cols=117 Identities=12% Similarity=-0.010 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHH
Q 022777 117 FMHEEDYNEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEA 191 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A 191 (292)
+++.|+.++|+..+.. |.+...+..+.+++.-.|+++.|.+.++-+.+++|+....-.. |-.+-. -+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~--yr~lI~----aE~~ 80 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ--LRHLVK----AAQA 80 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHH----HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH--HHHHHH----HHHH
Confidence 4556666666666543 5666666666666666666666667777777777765421111 000000 0000
Q ss_pred HH-HHHH-hHhh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 192 YL-IFQD-FSEK---YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 192 ~~-~~~~-~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
+. +|.- ..-. .|..-.....-+......|+.++|...-.++++.-|..
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 00 0000 0001 12222334444666667788888888888888776654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.19 E-value=0.99 Score=44.12 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=124.4
Q ss_pred hhhhccHHHHHhh-ccCCC----CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc--CC---------ch--HHHHHHH
Q 022777 16 NFYLGAYQAAINN-SDLTN----LPPDDAVERDCLVYRSYIALGSYQLVISEIDES--AA---------TP--LQAVKLL 77 (292)
Q Consensus 16 ~~~~g~~~~Ai~~-~~~~~----~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a--~~---------~~--~~a~~~l 77 (292)
....|+.++++.. ...+. .+|.-...+.+.+|.++...+ .+++..+... ++ +. ..+...|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3467788888887 33332 222223445555555554444 4677666543 11 11 1345567
Q ss_pred HHhhcCCCChhHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHhhc---CCchhHHH--HHHHHHHhCC
Q 022777 78 ALYLSSPDNKESTISSLKEWLSDPAIGSN--ATLRLIAGIIFMHEEDYNEALKHTNA---GGTMELHA--LNVQIFLKMH 150 (292)
Q Consensus 78 a~~~~~~~~~~~A~~~~~~~l~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~~~--~~a~~~~~~~ 150 (292)
+.++.+.++ ++++..+..++.. +... ..+-+.+|.+++..|+.+-....+.. ..+..... .++.-++..|
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~d--d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYN--DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 777765554 4667778887765 2221 24557788999999987655554443 22333322 3334455788
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhccccHHHHHH-HHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022777 151 RSDYAERQLRAMQQIDEDHTLTQLANAWL--NLAVGGSKIQEAYL-IFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEG 227 (292)
Q Consensus 151 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~--~l~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 227 (292)
+.+.+..+++.+... ++ +..+.+-+++ ..+.|.|+. .|++ ++..+.....++..-.-.+|......|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~d-p~vRygaa~alglAyaGTGn~-~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DE-SLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SC-HHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CC-HHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888776553 22 3333332221 123355654 4444 5555554333333322223333344555544444
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH--HhcCCc---HHHHHHHHH
Q 022777 228 LLLDALNKDAKDPETLANLVVCS--LHQGKS---TSRYLNQLK 265 (292)
Q Consensus 228 ~~~~al~~~p~~~~~~~~l~~~~--~~~g~~---a~~~~~~~~ 265 (292)
.+.... .-.|+.+.+..+..+ ...|++ +...+.++.
T Consensus 616 lv~~L~--~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLS--KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGG--GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHH--hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 443322 234566665554443 233443 666776664
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.99 E-value=0.22 Score=41.13 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=44.1
Q ss_pred hcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 81 LSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 81 ~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
+.+.|+.+.+++.++..++. +|.|...+..+-++++-.|+++.|.+.++.
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34568899999999999988 899999999999999999999999998886
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.54 Score=44.91 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=44.5
Q ss_pred HhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022777 182 AVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLD 231 (292)
Q Consensus 182 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (292)
...+++++-|+.+-++++...|.+...|..|+.||..+|+|+.|+-.+.-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 33567899999999999999999999999999999999999999965543
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.78 E-value=0.57 Score=46.17 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHhHhh-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 022777 186 SKIQEAYLIFQDFSEK-YPMTGLILNGKAVCCMHMGNF-DEAEGLLLDALNK 235 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 235 (292)
|++++|..+|+++.+. ...|...|+.+=.++.+.|+. ++|.+.|++....
T Consensus 179 G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 4455555555555433 222344455554455555543 4455555555544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=2.3 Score=37.89 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhh--CCCc--H--HHHHHHHHHHHHhccccHHHHHHHHHHhHh---hCCCCH----
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQI--DEDH--T--LTQLANAWLNLAVGGSKIQEAYLIFQDFSE---KYPMTG---- 206 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~--~p~~--~--~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~---~~p~~~---- 206 (292)
..++.++...|++.+|..++..+..- ..++ . ...+.... ++...+++.+|...++++.. ..+.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r--l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME--LSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34566666666666666666665421 1111 1 11122222 22233456666666666421 222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNK 235 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (292)
.++...|.++...++|.+|-+.|.+++..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35556677777777777777777776654
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.60 E-value=0.88 Score=39.83 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=57.0
Q ss_pred HhCCChHHHHHHHHHHHhhCCCcHH-------------HHHHHH-------HHHHHhccccHHHHHHHHHHhHhhCCCCH
Q 022777 147 LKMHRSDYAERQLRAMQQIDEDHTL-------------TQLANA-------WLNLAVGGSKIQEAYLIFQDFSEKYPMTG 206 (292)
Q Consensus 147 ~~~~~~~~A~~~l~~~~~~~p~~~~-------------~~l~~a-------~~~l~~~~~~~~~A~~~~~~~~~~~p~~~ 206 (292)
...|+++.|...+++++.+....++ .++... .+......|++.+|+..++.++..+|-+-
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3467888888888888876422210 111111 11112234668888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al 233 (292)
.++..+-.++...|+..+|++.|++.-
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888777753
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.53 E-value=0.32 Score=47.94 Aligned_cols=90 Identities=7% Similarity=-0.086 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhc-------CCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHH
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDES-------AATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAG 114 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a-------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la 114 (292)
.+..+...|.+.|+.++|...+... -.|+..++..|...+++.|+.++|..++.++...|..|+ ...|..+-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHH
Confidence 3444566677777777777776421 356666777777777777777777777777777766665 34444444
Q ss_pred HHHHhcCC-HHHHHHHhhc
Q 022777 115 IIFMHEED-YNEALKHTNA 132 (292)
Q Consensus 115 ~~~~~~g~-~~~A~~~~~~ 132 (292)
..+++.|+ .++|.++|++
T Consensus 208 ~glcK~G~~~e~A~~Ll~E 226 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQ 226 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHH
Confidence 56677776 4567777765
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.96 E-value=4 Score=38.05 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
+++..|...|..+....+..+...+.+|.++...|+.++|...|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4566666666665544334556666666666666666666666666553
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.54 E-value=1.4 Score=44.32 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=100.9
Q ss_pred hhhhhccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCch-HHHHHHHHHhhcCCCChhHHHHH
Q 022777 15 NNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATP-LQAVKLLALYLSSPDNKESTISS 93 (292)
Q Consensus 15 ~~~~~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~-~~a~~~la~~~~~~~~~~~A~~~ 93 (292)
..+..|.++-+.+...|...+|. ..|.+|+++...|++++|...|+++...- .. -........ ...
T Consensus 821 ~l~~~~~~~~~~~l~~~~~~~~~----~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~--------~~l~~~~~~-~~~ 887 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIGWLNSDPI----AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSH--------TSQFAVLRE-FQE 887 (1139)
T ss_dssp HHHHHSCTTHHHHHHHHSCCCHH----HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTC--------CCSCSSHHH-HHH
T ss_pred HHHHhhhHHHHHHHhhhccCCcH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc--------chhhhhhcc-ccc
Confidence 45667888777766445444543 24889999999999999999998871100 00 000001111 011
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc------CCchh----HHHHHHHHHHhCCChHHHHHHHHHHH
Q 022777 94 LKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA------GGTME----LHALNVQIFLKMHRSDYAERQLRAMQ 163 (292)
Q Consensus 94 ~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~----~~~~~a~~~~~~~~~~~A~~~l~~~~ 163 (292)
....... ...-+.+|..+..++.+.|-++.+++.-.. +++++ .+..+-..++..|+|++|...+-..-
T Consensus 888 ~~~~~~~--~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 888 IAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHTTTS--CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccc--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 1111111 222345566666677777777666655443 22222 33444556677788888777665443
Q ss_pred hhC-CCcHHHHHHHHHH---------HHHhccccHHHHHHHHHHhHh-h-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHH
Q 022777 164 QID-EDHTLTQLANAWL---------NLAVGGSKIQEAYLIFQDFSE-K-YPM-TGLILNGKAVCCMHMGNFDE-AEGLL 229 (292)
Q Consensus 164 ~~~-p~~~~~~l~~a~~---------~l~~~~~~~~~A~~~~~~~~~-~-~p~-~~~~~~~la~~~~~~g~~~~-A~~~~ 229 (292)
... ..+.+.++....+ .+-. -|-.++.-.++..-.+ . .+. .|.+|.-|=...+..|++-+ |.-+|
T Consensus 966 d~~~r~~cLr~LV~~lce~~~~~~L~~lpf-~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 966 TTPLKKSCLLDFVNQLTKQGKINQLLNYSM-PTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp HSSSCHHHHHHHHHHHHHHCCHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChhhhhCCCC-ccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHH
Confidence 221 1112222221111 0000 1223333333332211 1 222 24455555555555666655 66788
Q ss_pred HHHHhh
Q 022777 230 LDALNK 235 (292)
Q Consensus 230 ~~al~~ 235 (292)
+++.++
T Consensus 1045 e~~~RL 1050 (1139)
T 4fhn_B 1045 EKLSRY 1050 (1139)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887765
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.54 E-value=2 Score=33.12 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q 022777 105 SNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVG 184 (292)
Q Consensus 105 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~ 184 (292)
.+++..+.+| +..|+++.|.+..+..++...|..+|...+..|+++-|+..|.++-..+ .+ .++++..|
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~L--~~Ly~~tg 74 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD------KL--SFLYLVTG 74 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------HH--HHHHHHHT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH------HH--HHHHHHhC
Confidence 3466677554 5889999999998887888889999999999999999998887764331 11 12233333
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
+.++- ....++.....+ ++....+++.+|++++++.+|.+.
T Consensus 75 --~~e~L-~kla~iA~~~g~----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 75 --DVNKL-SKMQNIAQTRED----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp --CHHHH-HHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred --CHHHH-HHHHHHHHHCcc----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23332 233333333333 334556788889999999888763
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.50 E-value=2.8 Score=42.14 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=74.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhcC----------------------------CchhHHHHHHHHHHhCCChHH
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNAG----------------------------GTMELHALNVQIFLKMHRSDY 154 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------------------------~~~~~~~~~a~~~~~~~~~~~ 154 (292)
.|.++...+.+|.+++..|++++|..+|.+. ..+..+.....++.+.|.++.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 5777778899999999999999999999871 011235566788899999999
Q ss_pred HHHHHHHHHhhC-CCcHHH--HHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCH
Q 022777 155 AERQLRAMQQID-EDHTLT--QLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNF 222 (292)
Q Consensus 155 A~~~l~~~~~~~-p~~~~~--~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 222 (292)
+++..+.+++.. +++... .+....+......++|++|...+...-... ---..+..+-..+++.|+.
T Consensus 918 vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 918 ALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCCh
Confidence 999999998864 333211 111111122223456888877765542211 1223444444444444443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.61 Score=41.47 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhc--------CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCCcHH-HH
Q 022777 106 NATLRLIAGIIFMHEEDYNEALKHTNA--------GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI---DEDHTL-TQ 173 (292)
Q Consensus 106 ~~~~~~~la~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~---~p~~~~-~~ 173 (292)
-..+...+|..|...|+++.|++.|.+ ..-.+.......+++..+++..+...+.++... .++... ..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345678899999999999999999987 234567777888999999999999999998765 233321 12
Q ss_pred --HHHHHHHHHhccccHHHHHHHHHHhHhhCC
Q 022777 174 --LANAWLNLAVGGSKIQEAYLIFQDFSEKYP 203 (292)
Q Consensus 174 --l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p 203 (292)
...+.+. ...++|.+|...|-++...+.
T Consensus 210 lk~~~gl~~--l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHC--LAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGG--GGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH--HHhChHHHHHHHHHHHhccCC
Confidence 2222222 334679999999988876543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.62 E-value=1.1 Score=39.24 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHh
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKL 266 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 266 (292)
+...++..+...|++.+|+..+++++..+|-+..++..+..++...|+. |.+.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556778889999999999999999999999999999999999999998 7777666544
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.52 E-value=4.5 Score=34.51 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=84.0
Q ss_pred CCchHHHHHHHHHhhcCCCCh--------hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCc--h
Q 022777 67 AATPLQAVKLLALYLSSPDNK--------ESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGT--M 136 (292)
Q Consensus 67 ~~~~~~a~~~la~~~~~~~~~--------~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~ 136 (292)
.+.+......+..++...... ..|+..-.+.-.. .-+++..+..+|..|...|++.+|...|--+.+ +
T Consensus 90 ~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~--~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~ 167 (336)
T 3lpz_A 90 QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDY--PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESP 167 (336)
T ss_dssp CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSC--TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchH
Confidence 344445556666666543321 2333333331111 345788999999999999999999888754332 2
Q ss_pred hHHH-HHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhccccHHHHHHHHHHhH----hhC--------
Q 022777 137 ELHA-LNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWL-NLAVGGSKIQEAYLIFQDFS----EKY-------- 202 (292)
Q Consensus 137 ~~~~-~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~-~l~~~~~~~~~A~~~~~~~~----~~~-------- 202 (292)
+... .+...+... .|......++.+-+ ++.. ++...|..+++... +.+
T Consensus 168 ~~~a~mL~ew~~~~----------------~~~e~dlfiaRaVL~yL~l--~n~~~A~~~~~~f~~~l~~~~p~L~~q~~ 229 (336)
T 3lpz_A 168 EVLARMEYEWYKQD----------------ESHTAPLYCARAVLPYLLV--ANVRAANTAYRIFTSALVEDNKGLTVQNI 229 (336)
T ss_dssp HHHHHHHHHHHHTS----------------CGGGHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHCTTSCCEES
T ss_pred HHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 3322 222221111 12222222222222 2222 34555555443322 222
Q ss_pred ----------CCCHHH-HHHHHHHHHhcCC---HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhc
Q 022777 203 ----------PMTGLI-LNGKAVCCMHMGN---FDEAEGLLLDALNKDA-KDPETLANLVVCSLHQ 253 (292)
Q Consensus 203 ----------p~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 253 (292)
|..|.+ ...+-.+-++.+. |..-...|+..++.+| .-...+-.+|..|...
T Consensus 230 ~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 230 GSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp CC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred ccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 334431 1222334445553 4445567777777777 6677777788877754
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.43 E-value=1.1 Score=40.66 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 022777 186 SKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLH 252 (292)
Q Consensus 186 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 252 (292)
..+..|...|.++....|++...++.+|.+....|+.-+|.-+|.+++......+.+.-|+...+..
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999999999999998777788888888877654
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.64 Score=42.21 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHhHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 022777 185 GSKIQEAYLIFQDFSEKYPMT-------GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.+.|+.|..+..+.. +|.+ ..+++.+|.+..-.++|.+|.+.+..|+..-|.+
T Consensus 244 ~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 244 NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 456899988888863 4432 4678888999999999999999999999887755
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.78 Score=41.01 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=104.5
Q ss_pred hhhhhhhhhhccHHHHHhh-ccCCC-----CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-----CCch-HHH-HHH
Q 022777 10 LFNLRNNFYLGAYQAAINN-SDLTN-----LPPDDAVERDCLVYRSYIALGSYQLVISEIDES-----AATP-LQA-VKL 76 (292)
Q Consensus 10 ~~~~~~~~~~g~~~~Ai~~-~~~~~-----~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-----~~~~-~~a-~~~ 76 (292)
+..+.. ..+|+++.|++. ..+.+ .+-.....+...+.+.+...|+++.....+.-. ..+. ... ...
T Consensus 21 ~~~~~~-l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~ 99 (445)
T 4b4t_P 21 FPKIDS-LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQK 99 (445)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHH
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444443 356899999887 22221 111112345566778888889998876655422 1121 111 111
Q ss_pred HHHhhcCCCC--hhHHHHHHHHHhcCCCCC------ccHHHHHHHHHHHHhcCCHHHHHHHhhc------C-----Cchh
Q 022777 77 LALYLSSPDN--KESTISSLKEWLSDPAIG------SNATLRLIAGIIFMHEEDYNEALKHTNA------G-----GTME 137 (292)
Q Consensus 77 la~~~~~~~~--~~~A~~~~~~~l~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~------~-----~~~~ 137 (292)
+..+...... .+.-+...+ .+....+. ........|+.++...|++.+|...+.. . .-.+
T Consensus 100 ~~~~l~~~~~~d~~~~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve 178 (445)
T 4b4t_P 100 VMEYLKSSKSLDLNTRISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ 178 (445)
T ss_dssp HHHHHHHHCTTHHHHHHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2222221122 212122222 12110011 1345568899999999999999999986 1 1245
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhh---CCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQI---DEDHTLT--QLANAWLNLAVGGSKIQEAYLIFQDFSEK 201 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~---~p~~~~~--~l~~a~~~l~~~~~~~~~A~~~~~~~~~~ 201 (292)
.+.....+|...+++.+|...++++... .+.++.. .+-.....+....++|.+|...|.++...
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6777788999999999999999997532 3333322 22222222233346799999999988754
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.56 E-value=1.4 Score=39.99 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhh
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLT 267 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 267 (292)
.+..+|.+......+..|..+|.+|+.+.|++...+..||.+....|+. +.-++-+++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 5677899999999999999999999999999999999999999888877 55555555543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=1.2 Score=39.64 Aligned_cols=96 Identities=18% Similarity=0.064 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHhhc-------CCchhHH---
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS-NATLRLIAGIIFMHEEDYNEALKHTNA-------GGTMELH--- 139 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~~--- 139 (292)
..++..+|.++...|+++.|+..|.++...+..++ -.+.+....++++..+++..+...+.+ .++++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34677899999999999999999999876533333 578888888999999999999998887 2344432
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 140 -ALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 140 -~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
...|.++...++|..|-..|-++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 234667788999999999998887653
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.51 E-value=0.0024 Score=57.36 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=27.2
Q ss_pred hhhh-hhhhhccHHHHHhhccCCC-CCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc
Q 022777 11 FNLR-NNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDES 66 (292)
Q Consensus 11 ~~~~-~~~~~g~~~~Ai~~~~~~~-~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 66 (292)
+.++ .+...|.-.+||+. .++ .+|++ +...-.+..+.|++++-+.++..+
T Consensus 58 s~LgkAqL~~~~v~eAIds--yIkA~Dps~----y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDS--YIKADDPSS----YMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTS--SCCCSCCCS----SSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred HHHHHHHHccCchHHHHHH--HHhCCChHH----HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444 33445666677765 333 35553 222344455667777777777655
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.28 E-value=1.3 Score=30.51 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=53.6
Q ss_pred HHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC
Q 022777 22 YQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSD 100 (292)
Q Consensus 22 ~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 100 (292)
+++|-.+.+|+...++ ..-+......+++.+|+|++|+...+..-.|+...|..|+.... |-.+++...+.++-..
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rl--Gl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHL--GLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHT--TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhc--ccHHHHHHHHHHHHhC
Confidence 5666666567766666 34445556778999999999998887666788888888888755 4556666666555543
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.95 E-value=1.4 Score=30.47 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=52.0
Q ss_pred HHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHHHHHHHHHhcC
Q 022777 22 YQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSD 100 (292)
Q Consensus 22 ~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 100 (292)
+++|-.+.+|+...++ ..-+......+++.+|+|++|+...+..-.|+...|..|+.... |-.+++...+.++-..
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rl--Gl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRL--GLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHH--TCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhc--ccHHHHHHHHHHHHhC
Confidence 5666666567666666 34445556778899999999998887666778888888887765 4555665565555443
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=87.88 E-value=7.7 Score=29.77 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred hhhhhhhhccHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhcCCchHHHHHHHHHhhcCCCChhHH
Q 022777 12 NLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKEST 90 (292)
Q Consensus 12 ~~~~~~~~g~~~~Ai~~~~-~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a~~~~~~a~~~la~~~~~~~~~~~A 90 (292)
.|-..+.-.+|+.++=... +..-.| +....++-++.-.|++..++-.+...+. ..+..--+-++....++.+|
T Consensus 8 kI~Ks~kY~dYdt~~fLsa~L~~~~~----eY~lL~~I~LyyngEY~R~Lf~L~~lNT--~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 8 KICKSIRYRDYETAIFLAACLLPCKP----EYRMLMSIVLYLNGEYTRALFHLHKLNT--CTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTCCB--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHccCCh----HHHhhhhhhhhhcchHhHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHH
Confidence 3445566678888876633 333233 3456677788889999999877754422 22222223345556799999
Q ss_pred HHHHHHHhcC
Q 022777 91 ISSLKEWLSD 100 (292)
Q Consensus 91 ~~~~~~~l~~ 100 (292)
+..++.++..
T Consensus 82 ~~~le~il~~ 91 (242)
T 3kae_A 82 IKSLESILEG 91 (242)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.58 E-value=23 Score=34.79 Aligned_cols=178 Identities=15% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHhhCChhHHHHhhhhcCC------ch--HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCc-------cH----HHH
Q 022777 50 YIALGSYQLVISEIDESAA------TP--LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGS-------NA----TLR 110 (292)
Q Consensus 50 ~~~~g~~~~Al~~~~~a~~------~~--~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~-------~~----~~~ 110 (292)
.+..|..++++..+..-.+ +. .-+++.++.+..+ ..++++..+...+.. ++ +. .+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag--~~~~~~~lL~~~L~~---~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG--FGRDTTDYLKNIIVE---NSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT--TTHHHHHHHHHHHHH---HSSCCSCHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHcC---ccccccccccHHHHHHHH
Confidence 4556777778877765422 22 2345566666554 334677777776653 21 11 345
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc---CCch----hHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA---GGTM----ELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 183 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~---~~~~----~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 183 (292)
..+|.++...++- ++.+.+.. .++. .+...+|.+++..|+.+....++..+.+...+.....++.+...+..
T Consensus 459 LGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 459 LGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 6777777777763 33333332 2222 24456677788888887777777776654444333333333333333
Q ss_pred ccccHHHHHHHHHHhHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 022777 184 GGSKIQEAYLIFQDFSEKYPMTGL----ILNGKAVCCMHMGNFDEAEGLLLDALNKDAK 238 (292)
Q Consensus 184 ~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 238 (292)
+. -+.+-.+.+.+.. . +++. +-+.+|..+...|+...-.+++..+. .+++
T Consensus 538 g~--~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~-~d~~ 591 (963)
T 4ady_A 538 GR--QELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-SDSN 591 (963)
T ss_dssp TC--GGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HCSC
T ss_pred CC--hHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc-cCCc
Confidence 32 3333333333332 2 2332 23345666778888544444555444 3444
No 266
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=87.48 E-value=1 Score=33.79 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHhhcCCchh
Q 022777 117 FMHEEDYNEALKHTNAGGTME 137 (292)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~ 137 (292)
+..+|++++|+.+-..-++++
T Consensus 83 yiGRg~~~eAlDiA~~L~D~q 103 (161)
T 2ynq_A 83 YIGRSQSEEALELARTIEDRD 103 (161)
T ss_dssp HHHHTCHHHHHHHHHHHTCHH
T ss_pred HHcCCchHHHHHHHHhcCcHH
Confidence 444577777777766644433
No 267
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=84.73 E-value=13 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.409 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHhhCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTG--------LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLV 247 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 247 (292)
.+.|+.+++.+-+..|-+. .+-.....+++++|.|++|.+.+++.+..+|.+.....-|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~ 155 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLL 155 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4556666666555543211 12223456778999999999999998887666554443333
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.62 E-value=26 Score=32.64 Aligned_cols=191 Identities=10% Similarity=-0.020 Sum_probs=111.4
Q ss_pred HHHHhhCChhHHHHhhhhc-----CCch--HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhc
Q 022777 48 RSYIALGSYQLVISEIDES-----AATP--LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHE 120 (292)
Q Consensus 48 ~~~~~~g~~~~Al~~~~~a-----~~~~--~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~ 120 (292)
.......+.+.|...+... .++. ......++.-+...+...++...+.+.... +.+.......+...++.
T Consensus 222 ~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 3344455667777777543 1222 112333444444444355666666665554 33344455566667788
Q ss_pred CCHHHHHHHhhc-C----CchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q 022777 121 EDYNEALKHTNA-G----GTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIF 195 (292)
Q Consensus 121 g~~~~A~~~~~~-~----~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~ 195 (292)
|+++.|..++.. + ......+.+|..+...|+.++|...|+++.. +.+....++.. . .|.. +.-
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa~--~--Lg~~-~~~----- 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAAQ--R--IGEE-YEL----- 366 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHHH--H--TTCC-CCC-----
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHHH--H--cCCC-CCC-----
Confidence 999999999987 2 3455788999999999999999999999975 44543333211 1 1110 000
Q ss_pred HHhHhhCC--CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q 022777 196 QDFSEKYP--MT---GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS 256 (292)
Q Consensus 196 ~~~~~~~p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 256 (292)
......+ .. ....+..+..+...|....|...+..++... ++.-...++.+....|.+
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWW 429 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCH
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCh
Confidence 0000001 00 0123456778899999999999988877643 234444555555555554
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.03 E-value=11 Score=27.87 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 022777 185 GSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKD 236 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (292)
+|+-++--.++..++...|-+|.++..+|.+|.+.|+..+|...+.+|.+..
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3456666667777666677789999999999999999999999999988754
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.15 E-value=15 Score=28.79 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCc----HHHHHHHHHHHHHhc--cccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 157 RQLRAMQQIDEDH----TLTQLANAWLNLAVG--GSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 157 ~~l~~~~~~~p~~----~~~~l~~a~~~l~~~--~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
.+++++++.--++ -..++...|+....- .+...++..+|.-+... .-..+.+|...|..+...|++++|..+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666631111 122444555543322 23366889999998765 456788999999999999999999999
Q ss_pred HHHHHhhCCCCHHHH
Q 022777 229 LLDALNKDAKDPETL 243 (292)
Q Consensus 229 ~~~al~~~p~~~~~~ 243 (292)
|+..++..-...+-+
T Consensus 138 y~~GI~~~A~P~~rL 152 (202)
T 3esl_A 138 LELGAENNCRPYNRL 152 (202)
T ss_dssp HHHHHHTTCBSHHHH
T ss_pred HHHHHHcCCccHHHH
Confidence 999998876554443
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.37 E-value=25 Score=31.89 Aligned_cols=125 Identities=9% Similarity=-0.023 Sum_probs=76.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CC----ch---HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCC
Q 022777 31 LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-AA----TP---LQAVKLLALYLSSPDNKESTISSLKEWLSDPA 102 (292)
Q Consensus 31 ~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~----~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 102 (292)
.+.++++.....+..+-|.|+..+.+++|...+.++ .| ++ ...++-+|.++.-++++.+|.+.+..++..
T Consensus 222 ~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-- 299 (523)
T 4b4t_S 222 SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-- 299 (523)
T ss_dssp CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS--
T ss_pred hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 556677766777777889999999999999999877 22 12 222344677777778999999999999887
Q ss_pred CCccH-------HHHHHHHHHHHhcCCHHHHHHHhhcCCc---hhHHHHHHHHHHhCCChHHHHHHH
Q 022777 103 IGSNA-------TLRLIAGIIFMHEEDYNEALKHTNAGGT---MELHALNVQIFLKMHRSDYAERQL 159 (292)
Q Consensus 103 ~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~l 159 (292)
.|.+. .++-.+--+-+-.|+..+ ...|.++.. ...+..+++++ +.|+...-...+
T Consensus 300 ap~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L 364 (523)
T 4b4t_S 300 APHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTI 364 (523)
T ss_dssp CSCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred CCcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 55432 122112222223576553 334444332 23355566553 667766544443
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=81.95 E-value=4.4 Score=36.22 Aligned_cols=111 Identities=15% Similarity=0.015 Sum_probs=63.3
Q ss_pred HHhccccHHHHHHHHHHhHhh--------CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC-----HH---
Q 022777 181 LAVGGSKIQEAYLIFQDFSEK--------YPM--TGLILNGKAVCCMHMGNFDEAEGLLLDALNK-DAKD-----PE--- 241 (292)
Q Consensus 181 l~~~~~~~~~A~~~~~~~~~~--------~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~--- 241 (292)
++...++..-+..+++.+-.. .|. -+.+++.+|.+++-.++|.+|...+..|+.. -|.+ ..
T Consensus 185 iYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~ 264 (455)
T 3t5v_B 185 IYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNG 264 (455)
T ss_dssp HHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHH
Confidence 344445566666666554322 222 2468888999999999999999999999988 6654 11
Q ss_pred --HHHHHHHHHHhcCCc-HHHHHHHH--HhhCC-CChhHHhH-HhhHHHHHHHHhhc
Q 022777 242 --TLANLVVCSLHQGKS-TSRYLNQL--KLTHP-DHMLVKRA-SSGDESFERALQSV 291 (292)
Q Consensus 242 --~~~~l~~~~~~~g~~-a~~~~~~~--~~~~P-~~~~~~~~-~~~~~~~~~~~~~~ 291 (292)
++..+..+-.-.|+. -..++++- ..+.| -.+.+..+ ......|+++++++
T Consensus 265 ~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~ 321 (455)
T 3t5v_B 265 TRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQN 321 (455)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 223344445556765 34444331 11111 12333333 23356677777654
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=81.36 E-value=12 Score=28.36 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022777 156 ERQLRAMQQIDEDH----TLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLL 229 (292)
Q Consensus 156 ~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (292)
..+++++++.-.++ -..++...|+..... .+++..+|.-+... .-..+.+|...|..+...|++.+|.++|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556665542211 123445556544322 34577788887754 4567889999999999999999999999
Q ss_pred HHHHhhCCCCHHHH
Q 022777 230 LDALNKDAKDPETL 243 (292)
Q Consensus 230 ~~al~~~p~~~~~~ 243 (292)
+..++..-...+.+
T Consensus 120 ~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 120 QEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHTTCBSHHHH
T ss_pred HHHHHcCCCcHHHH
Confidence 99999876655544
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=78.89 E-value=10 Score=29.77 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH-----HHHHHHHHhcCCc-HHHHHHHHHhhCCCChhHHhH-H
Q 022777 206 GLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL-----ANLVVCSLHQGKS-TSRYLNQLKLTHPDHMLVKRA-S 278 (292)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~~g~~-a~~~~~~~~~~~P~~~~~~~~-~ 278 (292)
..+++.+|.+++..++|.+|...+.+|+..-|.+.... ..+..+-.-.|+. -...+++- ...|-.+.+..+ .
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~-~~~~y~~L~~Avr~ 92 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKY-HLMQFAEVTRAVSE 92 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhC-chhHHHHHHHHHHh
Confidence 35777788888888888888888888888877654322 2233333456764 44444321 111222333333 2
Q ss_pred hhHHHHHHHHhhc
Q 022777 279 SGDESFERALQSV 291 (292)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (292)
.....|+++++++
T Consensus 93 Gdl~~f~~~l~~~ 105 (203)
T 3t5x_A 93 GNLLLLHEALAKH 105 (203)
T ss_dssp TCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 3345666666554
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=77.05 E-value=18 Score=28.75 Aligned_cols=122 Identities=9% Similarity=0.047 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHhhcC-CchhHHHHHHH---HHHhCCC--hHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccccH
Q 022777 119 HEEDYNEALKHTNAG-GTMELHALNVQ---IFLKMHR--SDYAERQLRAMQQIDEDHT----LTQLANAWLNLAVGGSKI 188 (292)
Q Consensus 119 ~~g~~~~A~~~~~~~-~~~~~~~~~a~---~~~~~~~--~~~A~~~l~~~~~~~p~~~----~~~l~~a~~~l~~~~~~~ 188 (292)
....++.++..+... +..+.+..... -.+-.|. -..-..+++++++.-.++. ..++...|+....- .
T Consensus 54 ~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~ 130 (223)
T 4aez_C 54 ERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I 130 (223)
T ss_dssp HHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c
Confidence 444567777765443 33333333221 1111222 1123466777776532221 23455666655432 4
Q ss_pred HHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 189 QEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 189 ~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
+++..+|.-+... .-..+.+|...|.++...|++.+|..+|+..++..-...+.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5777888887764 455788999999999999999999999999998876654433
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.74 E-value=22 Score=26.43 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 173 QLANAWLNLAVGGSKIQEAYLIFQDFSEK--YPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 173 ~l~~a~~~l~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
++...|+....- .+++.++|.-+... .-..+.+|...|..+...|++++|..+|+..++..-...+-+
T Consensus 69 RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 69 RFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 455556654432 34578888887764 456788999999999999999999999999999876655544
No 277
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=75.67 E-value=3.5 Score=32.19 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHhhCCCChhHHhH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRA 277 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~a~~~~~~~~~~~P~~~~~~~~ 277 (292)
.....+++++|.+++|.+.|++....+|.+.... .+++.-+.+.+|.||.++.+
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr--------------~kL~~II~~Kd~~H~~lqnF 174 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFK--------------SKLLMIISQKDTFHSFFQHF 174 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-----CCTTH--------------HHHHHHHHTTCTTCHHHHHS
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCCCchHHH--------------HHHHHHHHccCCCcHHHHHc
Confidence 3455688999999999999999887766654322 34555556678888877664
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.62 E-value=37 Score=28.89 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=55.7
Q ss_pred HHHHHHhhc-----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 022777 124 NEALKHTNA-----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDF 198 (292)
Q Consensus 124 ~~A~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~ 198 (292)
.+|++|-.+ -.+|+.+..+|.+|.+.+++.+|+.++- +. ..++. ..++...+.. .
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~-~~~a~mL~ew----------------~ 178 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESP-EVLARMEYEW----------------Y 178 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHH-HHHHHHHHHH----------------H
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchH-HHHHHHHHHH----------------H
Confidence 456666654 3789999999999999999999999882 21 22221 1111111111 1
Q ss_pred HhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 022777 199 SEKYPMTGLILNGKAV-CCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 199 ~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al 233 (292)
....|..++.+...|+ .+...++...|...+..-+
T Consensus 179 ~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1223555665555555 5678999999988655544
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.50 E-value=13 Score=29.05 Aligned_cols=61 Identities=8% Similarity=-0.069 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 71 LQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 71 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
...|...+.++. .++......+|.-+...++.-..+..|..-|..+...|++.+|..+|+.
T Consensus 80 LklWl~Ya~~~~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 80 LKIWIWYINLFL-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555441 2334455555555555555555566666666666666666666666654
No 280
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=71.65 E-value=0.015 Score=52.35 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=115.5
Q ss_pred hccHHHHHhhccCCCCCCchHHHHHHHHHHHHHhhCChhHHHHhhhhc-CCchHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 022777 19 LGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDES-AATPLQAVKLLALYLSSPDNKESTISSLKEW 97 (292)
Q Consensus 19 ~g~~~~Ai~~~~~~~~~p~~~~~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 97 (292)
.++.++|.++ ..+.+. ++.+..+|++++..|+..+||..|-++ +|.+-.- +.......|.++.-+..++ +
T Consensus 38 i~~ldRa~ey--A~~~n~---p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~e---Vi~~A~~~~~~edLv~yL~-M 108 (624)
T 3lvg_A 38 IGNLDRAYEF--AERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYME---VVQAANTSGNWEELVKYLQ-M 108 (624)
T ss_dssp GCCSTTTTTS--SSSCCC---CCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSH---HHHHTTTSSCCTTHHHHHH-T
T ss_pred ccccHHHHHH--HHHhCC---ccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHH---HHHHHHhCCCHHHHHHHHH-H
Confidence 4567777777 333321 134577899999999999999999888 5554322 2233344566666555543 2
Q ss_pred hcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCc-------------------------hhHHHHHHHHHHhCCCh
Q 022777 98 LSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGT-------------------------MELHALNVQIFLKMHRS 152 (292)
Q Consensus 98 l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~a~~~~~~~~~ 152 (292)
.+. .-..+.+-..|.-+|-+.|+..+=.+.+..|+. ..-+..++.+++..|++
T Consensus 109 aRk--~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 109 ARK--KARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TST--TCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred HHH--HhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 222 122222223333344455544333333322211 11123445566666666
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022777 153 DYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDA 232 (292)
Q Consensus 153 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (292)
..|...-+++ +....+..+..+ -+ +.+.+.-|-.+--.++- +|+.. -.+-..|...|.|++-+..++.+
T Consensus 187 q~AVdaArKA---ns~ktWKeV~~A--Cv--d~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARKA---NSTRTWKEVCFA--CV--DGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTTC---CSSCSHHHHTHH--HH--HSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHhc---CChhHHHHHHHH--Hh--CchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHHHHHHHHHH
Confidence 6665433332 111122111111 11 11223333223222222 33322 23445678889999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCC
Q 022777 233 LNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 233 l~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
+.+...+......||.+|.+-.-
T Consensus 256 lglErAHmGmFTELaILYsKY~P 278 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKFKP 278 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSSCT
T ss_pred hCCCchhHHHHHHHHHHHHhcCH
Confidence 99999999999999999877543
No 281
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.08 E-value=13 Score=23.92 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETL 243 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 243 (292)
..+|..+...|++++|..+|-+|+..-|+..+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4578888888999999998999998888876554
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.84 E-value=27 Score=25.94 Aligned_cols=28 Identities=14% Similarity=-0.159 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhh
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQI 165 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 165 (292)
.+...|..+...|++.+|..+|+..++.
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555554
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.49 E-value=55 Score=27.48 Aligned_cols=88 Identities=11% Similarity=-0.060 Sum_probs=47.9
Q ss_pred HHHHHHHHhhCChhHHH-------Hhhhhc-CCchHHHHHHHHHhhcCCC--Ch------hHHHHHHHHHhcCCCCCccH
Q 022777 44 CLVYRSYIALGSYQLVI-------SEIDES-AATPLQAVKLLALYLSSPD--NK------ESTISSLKEWLSDPAIGSNA 107 (292)
Q Consensus 44 ~~la~~~~~~g~~~~Al-------~~~~~a-~~~~~~a~~~la~~~~~~~--~~------~~A~~~~~~~l~~~~~p~~~ 107 (292)
+.-+..+...|++..|- +.++++ .+.+......+..++..-. +. ..|+..-.+.-.. .-+++
T Consensus 57 ~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~--~~Gdp 134 (312)
T 2wpv_A 57 SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY--KFGDP 134 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC--TTCCH
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC--CCCCH
Confidence 33344555556654433 233444 4445556666666655322 11 2233332222111 23478
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhcC
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNAG 133 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~~ 133 (292)
..+..+|..|...|++.+|...|-..
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 88888888888888888888877654
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.69 E-value=32 Score=33.79 Aligned_cols=94 Identities=7% Similarity=-0.085 Sum_probs=61.9
Q ss_pred HHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCC--------------------H--HHHHHHHHHHH
Q 022777 195 FQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALN-KDAKD--------------------P--ETLANLVVCSL 251 (292)
Q Consensus 195 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~--------------------~--~~~~~l~~~~~ 251 (292)
..+++.-.|.++-.-+.+|.++...|++++|...|++|-. +.+++ . ..+.+.+.++.
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE 908 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 908 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHH
Confidence 4556777888888889999999999999999999998742 21111 1 12334455666
Q ss_pred hcCCc--HHHHHHHHHhh-CCCChhHHhHHhhHHHHHHHHh
Q 022777 252 HQGKS--TSRYLNQLKLT-HPDHMLVKRASSGDESFERALQ 289 (292)
Q Consensus 252 ~~g~~--a~~~~~~~~~~-~P~~~~~~~~~~~~~~~~~~~~ 289 (292)
..+-+ +..+.+.+++. .++++. ...-.-...|.-+++
T Consensus 909 ~~~a~~~vi~fA~lAI~~~~~dd~~-l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 909 EESAYIDALEFSLLADASKETDDED-LSIAITHETLKTACA 948 (950)
T ss_dssp HTTCHHHHHHHHHHHHHTCCSCCHH-HHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHHhh
Confidence 66766 77888888864 445444 333344555655543
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.22 E-value=28 Score=26.23 Aligned_cols=29 Identities=7% Similarity=-0.111 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 138 LHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 138 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
.+...|..+...|++.+|..+|+..++..
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444555555555555555555555543
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.82 E-value=26 Score=27.86 Aligned_cols=61 Identities=5% Similarity=-0.127 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHhhc----CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 103 IGSNATLRLIAGIIFMHEEDYNEALKHTNA----GGTMELHALNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 103 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
+|....+|+..+.. ..++.+-...+.. ......+...|..+...|++.+|..+|+..++..
T Consensus 116 D~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 116 DVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444555555541 3444444444433 2334445566677777777777777777776654
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.26 E-value=39 Score=23.29 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
...++|... -+.+.. .++...+..+....+.++|+|++|+...+....|+..-.++.+-.+.|--++++..+.++..
T Consensus 20 H~HqEA~tI-AdwL~~--~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 20 HCHEEALCI-AEWLER--LGQDEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp TCHHHHHHH-HHHHHH--TTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHH-HHHHHh--CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 345665443 334444 45544555666677899999999999998855777777777788899999998887755543
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.88 E-value=1.7e+02 Score=28.67 Aligned_cols=116 Identities=12% Similarity=0.040 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHhhc-CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccccHHH
Q 022777 113 AGIIFMHEEDYNEALKHTNA-GGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQE 190 (292)
Q Consensus 113 la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~~~~~~~ 190 (292)
+..-+...|.++-|.+...- +.++-..+.+|.+++..|++++|...|+++..- .+++..... ..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~-------------~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV-------------LRE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG-------------GHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc-------------hhh
Confidence 44556677777777665544 566666778888888888888888888877532 111100000 000
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHH
Q 022777 191 AYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNK-DAKDPET 242 (292)
Q Consensus 191 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~ 242 (292)
...++.. .+...-...+|.....+..+.+-++-++..-+.|+.. .++++..
T Consensus 883 ~~~ll~~-~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 883 FQEIAEK-YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp HHHHHHH-TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred hhhccCc-ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 0000000 0111112347778888889999999999999999964 5667653
No 289
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=52.84 E-value=54 Score=22.63 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 85 DNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 85 ~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
...++|... -+.+.. .++...+..+....+.++|+|++|+...+..-.|+..-.++.+-.+.|--++++..+.++..
T Consensus 21 H~HqEA~tI-AdwL~~--~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 21 HYHEEANCI-AEWLHL--KGEEEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp TCHHHHHHH-HHHHHH--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHH-HHHHHh--CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 345665433 334444 45544555666677889999999999998855677666777777888888888877755533
No 290
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=47.78 E-value=26 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~ 234 (292)
+-.-+.|++++|+..|.++++
T Consensus 27 ve~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334566888888887777764
No 291
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=47.60 E-value=86 Score=23.44 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhc--C--CchhHHHHHHHHHHhCCChHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q 022777 111 LIAGIIFMHEEDYNEALKHTNA--G--GTMELHALNVQIFLKMHRSDY-AERQLRAMQQIDEDHTLTQLANAWLNLAVGG 185 (292)
Q Consensus 111 ~~la~~~~~~g~~~~A~~~~~~--~--~~~~~~~~~a~~~~~~~~~~~-A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 185 (292)
+.-+...+-..+|.+-+..++. | -.....+.+|..|+....+.. -...+-.-+....+. .+..-|+++. +
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde---~yL~YWIyiG--R 86 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDE---QYMLYWIYIG--R 86 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCH---HHHHHHHHHH--H
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCH---HHHHHHHHHc--C
Confidence 3445556666677777776665 2 223455666666666655442 222222222221111 1223455553 3
Q ss_pred ccHHHHHHHHHHh
Q 022777 186 SKIQEAYLIFQDF 198 (292)
Q Consensus 186 ~~~~~A~~~~~~~ 198 (292)
|++++|+.+-+.+
T Consensus 87 g~~~eAlDiA~~L 99 (161)
T 2ynq_A 87 SQSEEALELARTI 99 (161)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CchHHHHHHHHhc
Confidence 4477776666555
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.38 E-value=20 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 022777 210 NGKAVCCMHMGNFDEAEGLLLDALNKDAKDPET 242 (292)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 242 (292)
..+|..+...|+++.|..+|-+|+..-|+..+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 457888888888899998888888888775443
No 293
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=47.25 E-value=45 Score=20.14 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=25.5
Q ss_pred HHHhccccHHHHHHHHHHhHhhCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 022777 180 NLAVGGSKIQEAYLIFQDFSEKYPMT-GLILNGKAVCCMHMGNFDEAE 226 (292)
Q Consensus 180 ~l~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~ 226 (292)
.+..|....++|..+-+-+ ...++. ..+-.-....++..|+|++|.
T Consensus 14 L~~TG~HcH~EA~tIA~~L-~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 14 LAGTGHHCHQEAASIADWL-AQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHTTTCHHHHHHHHHHH-HTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHccchHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3456777788887666655 444453 345555688899999999885
No 294
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.22 E-value=47 Score=21.24 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCcH
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQIDEDHT 170 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~ 170 (292)
..+|..+...|+++++..++-+++...|...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4567888888889999998888888877663
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=44.65 E-value=31 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~ 234 (292)
+-.-+.|++++|+..|.++++
T Consensus 19 ve~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444566888888877777764
No 296
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=44.25 E-value=68 Score=21.30 Aligned_cols=57 Identities=5% Similarity=-0.023 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHH--------------HHHHHHHHhhCCCCHHHHH
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEA--------------EGLLLDALNKDAKDPETLA 244 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A--------------~~~~~~al~~~p~~~~~~~ 244 (292)
+++|+..++++-....++|+.|...-.++..-.+-... ...+.++-.+..++++.+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~ 80 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLS 80 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHH
Confidence 66777777777777766776665544444322211111 2556666666666666553
No 297
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.93 E-value=25 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhc
Q 022777 107 ATLRLIAGIIFMHEEDYNEALKHTNA 132 (292)
Q Consensus 107 ~~~~~~la~~~~~~g~~~~A~~~~~~ 132 (292)
+..+...|..++..|+|++||++.++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 45567788888999999999988775
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=43.81 E-value=1.2e+02 Score=24.06 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhCChhHHHHhhhhc-CCchHHH----HHHHHHhhcCCCChhHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 022777 41 ERDCLVYRSYIALGSYQLVISEIDES-AATPLQA----VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGI 115 (292)
Q Consensus 41 ~a~~~la~~~~~~g~~~~Al~~~~~a-~~~~~~a----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~p~~~~~~~~la~ 115 (292)
.....-+.++...|. ..++..+... ..++... ...|+.+-.........+..+...+.. ++ ++.+......
T Consensus 38 ~vr~~A~~~L~~~~~-~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~-~~~vr~~a~~ 113 (280)
T 1oyz_A 38 LKRISSARVLQLRGG-QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DK-SACVRATAIE 113 (280)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CC-CHHHHHHHHH
Confidence 334444555555664 4456555544 3333322 223333211111233334444432222 23 3444444444
Q ss_pred HHHhcCC-----HHHHHHHhhc---CCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc
Q 022777 116 IFMHEED-----YNEALKHTNA---GGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187 (292)
Q Consensus 116 ~~~~~g~-----~~~A~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 187 (292)
.+...|. .+.++..+.. ..++..+...+..+...|.. .+...+.+++. +|+.. .+..-++..-..+. .
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~-d~~~~-vr~~a~~aL~~~~~-~ 189 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-ATIPLLINLLK-DPNGD-VRNWAAFAININKY-D 189 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT-CSSHH-HHHHHHHHHHHHTC-C
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc-CCCHH-HHHHHHHHHHhhcc-C
Confidence 4444331 3455555543 45566666666666666653 35666666654 33332 22222222111121 1
Q ss_pred HHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHh
Q 022777 188 IQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS-TSRYLNQLKL 266 (292)
Q Consensus 188 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~ 266 (292)
-.++...+.+++. ..++.+......++...|+ .+++..+.+.+.. |+ +....+..+...|.. +...+.++..
T Consensus 190 ~~~~~~~L~~~l~--d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d-~~---vr~~a~~aL~~i~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 190 NSDIRDCFVEMLQ--DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKK-NT---VYDDIIEAAGELGDKTLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS-SS---CCHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred cHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC-cc---HHHHHHHHHHhcCchhhhHHHHHHHh
Confidence 3455555555543 2456677777777888884 4677777777753 33 333444455566776 7777777776
Q ss_pred hCCCChhHHhHH
Q 022777 267 THPDHMLVKRAS 278 (292)
Q Consensus 267 ~~P~~~~~~~~~ 278 (292)
.+++...+....
T Consensus 263 ~~~~~~~~~~~~ 274 (280)
T 1oyz_A 263 KFDDNEIITSAI 274 (280)
T ss_dssp TSSCCHHHHHHH
T ss_pred cCCCcHHHHHHH
Confidence 667666655543
No 299
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=40.52 E-value=87 Score=24.15 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhhc---CCchHHHHHHHHHhhcCCCChhHHHHHHHHHh--------cCCCCCc-cH
Q 022777 40 VERDCLVYRSYIALGSYQLVISEIDES---AATPLQAVKLLALYLSSPDNKESTISSLKEWL--------SDPAIGS-NA 107 (292)
Q Consensus 40 ~~a~~~la~~~~~~g~~~~Al~~~~~a---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~p~-~~ 107 (292)
....+.++|.-+-.|+.+.|...+.++ ....... ...+ ...+....... ...+ .....|. .-
T Consensus 35 A~~DI~~AR~aL~~G~~~~Ak~lL~~A~~~L~~a~~d---~~~f-~ka~~k~~~~~--~~~iPI~~~l~v~edf~~tpeK 108 (191)
T 3dza_A 35 AMRDIQFARLALFHGQPDSAKKLTDDAAALLAADDAS---WAKF-VKTDAKAKMIA--DRYVIINASIALSEDYVATPEK 108 (191)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHH---HHTT-BCTTCCCCSSS--SCEEEEEEEEEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc---hHHH-HhhcccCCCCC--CceEEEcceeeeeccccCChHH
Confidence 334566789999999999999888755 1111000 1111 11111000000 0000 0110121 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhc------------C-CchhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNA------------G-GTMELHALNVQIFLKMHRSDYAERQLRAMQQ 164 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~------------~-~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~ 164 (292)
...+.-+.-.++.|+.+.|.+.++- | ..+......+..++..|++.+|-..|+.+..
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5667788999999999999999986 2 3445577788899999999999999988865
No 300
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.90 E-value=54 Score=21.59 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 022777 211 GKAVCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~ 234 (292)
..|+-.-..|++++|+..|.++++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444667778887777777764
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.26 E-value=1.5e+02 Score=23.57 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=45.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhh---CCCcH--HHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHh
Q 022777 144 QIFLKMHRSDYAERQLRAMQQI---DEDHT--LTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMH 218 (292)
Q Consensus 144 ~~~~~~~~~~~A~~~l~~~~~~---~p~~~--~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 218 (292)
.+++...+|++|...+++.-+. .+... ........+..... ++...=.+.+.+.+.. ...+.........+.+
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~-eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L~r 103 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIE-QRREAISSKLSQSILS-SNEIVHLKSGTENMIK 103 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHH-HHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHH-HHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 4667777888887777776543 12100 00011111111111 1122212222222333 4456666667788899
Q ss_pred cCCHHHHHHHHHHHH
Q 022777 219 MGNFDEAEGLLLDAL 233 (292)
Q Consensus 219 ~g~~~~A~~~~~~al 233 (292)
+|+-++|...|-++-
T Consensus 104 Lg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 104 LGLPEQALDLFLQNR 118 (235)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 999999999988764
No 302
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.38 E-value=63 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022777 208 ILNGKAVCCMHMGNFDEAEGLLLDAL 233 (292)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al 233 (292)
.+..++..+...|+|++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566777777888888766544443
No 303
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.84 E-value=63 Score=21.00 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=14.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022777 214 VCCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~ 234 (292)
.-.-..|++++|+..|..+++
T Consensus 21 v~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 21 IDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 344556888888877777765
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.64 E-value=50 Score=22.10 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=12.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 022777 215 CCMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~ 234 (292)
-.-..|++++|+..|..+++
T Consensus 24 e~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 24 ELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 33455777777766666654
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.70 E-value=36 Score=22.10 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhc
Q 022777 42 RDCLVYRSYIALGSYQLVISEIDES 66 (292)
Q Consensus 42 a~~~la~~~~~~g~~~~Al~~~~~a 66 (292)
-...+||-|...|+|+.|+.+|+.+
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~ 38 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGV 38 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3567899999999999999998744
No 306
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.33 E-value=73 Score=22.36 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 022777 216 CMHMGNFDEAEGLLLDALN 234 (292)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~ 234 (292)
.-..|++++|+.+|..+++
T Consensus 28 ~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 28 EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3455777777777766655
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.40 E-value=1.1e+02 Score=28.62 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 022777 207 LILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGK 255 (292)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 255 (292)
+.....|......|++.-|......++..+|+|.++..-++.++.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999999999999888888887763
No 308
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.85 E-value=1.4e+02 Score=23.06 Aligned_cols=26 Identities=12% Similarity=-0.217 Sum_probs=12.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhC
Q 022777 141 LNVQIFLKMHRSDYAERQLRAMQQID 166 (292)
Q Consensus 141 ~~a~~~~~~~~~~~A~~~l~~~~~~~ 166 (292)
-+|.++...+++.+|.+.+..+...-
T Consensus 19 YlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 19 YVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 34444444444444444444444443
No 309
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.74 E-value=1.8e+02 Score=21.50 Aligned_cols=122 Identities=9% Similarity=0.001 Sum_probs=78.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCcHHHHH----HHH-----HHHHH---------hccccHHHHHHHHHHhHhhCCC
Q 022777 143 VQIFLKMHRSDYAERQLRAMQQIDEDHTLTQL----ANA-----WLNLA---------VGGSKIQEAYLIFQDFSEKYPM 204 (292)
Q Consensus 143 a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l----~~a-----~~~l~---------~~~~~~~~A~~~~~~~~~~~p~ 204 (292)
|.-....|..++-.+++.+...-.|-+...++ ..+ .+-.. ..-++....+.+|-++-.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~---- 89 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT---- 89 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC----
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc----
Confidence 33455678888888888888776654432221 100 00000 012445666666655422
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHhhC
Q 022777 205 TGLILNGKAVCCMHMGNFDEAEGLLLDALNKDAKDPETLANLVVCSLHQGKS--TSRYLNQLKLTH 268 (292)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 268 (292)
+.++...--..+...|+.++-.+.+...+..+|-+|++++.++..|.+.|.. +.++++++.+..
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 2222222335678899999999999998788888899999999999999987 999999987643
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.22 E-value=61 Score=21.90 Aligned_cols=30 Identities=7% Similarity=-0.097 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCc
Q 022777 140 ALNVQIFLKMHRSDYAERQLRAMQQIDEDH 169 (292)
Q Consensus 140 ~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~ 169 (292)
..+|..+...|+++.|..++-+++...|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 356777888888888888888888876655
No 311
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.97 E-value=1.7e+02 Score=25.78 Aligned_cols=86 Identities=12% Similarity=0.005 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022777 149 MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGL 228 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 228 (292)
+.+|..|+..|-.+.++.|.+....-. .-+.+|+..-++.-. ......|..+|..+.+.+++.+|.+.
T Consensus 258 l~~YPmALgnLgDLEei~pt~grp~~~----------~Lf~~AI~~ar~~Y~--~~hvYPYtYlgG~~~R~~~~~eAl~~ 325 (489)
T 4gq4_A 258 LERYPMALGNLADLEELEPTPGRPDPL----------TLYHKGIASAKTYYR--DEHIYPYMYLAGYHCRNRNVREALQA 325 (489)
T ss_dssp TTTCHHHHHHHHHHHHHSCCTTSCCHH----------HHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcchhhhcccCHhhcCCCCCCCCHH----------HHHHHHHHHHHHhcc--cCcccceeecchHHHHhhhHHHHHHH
Confidence 567777877777777776654210000 014444444333222 23456688899999999999999998
Q ss_pred HHHHHhh------CCCCHHHHHHH
Q 022777 229 LLDALNK------DAKDPETLANL 246 (292)
Q Consensus 229 ~~~al~~------~p~~~~~~~~l 246 (292)
+.++-.. ..+|.+++-.+
T Consensus 326 wa~aa~Vi~~YnY~reDeEiYke~ 349 (489)
T 4gq4_A 326 WADTATVIQDYNYCREDEEIYKEF 349 (489)
T ss_dssp HHHHHHHHTTSCCCTTCHHHHHHH
T ss_pred hhhhhhhhhhcccccchHHHHHHH
Confidence 8877442 35555555443
No 312
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.43 E-value=61 Score=21.27 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022777 221 NFDEAEGLLLDALNKDAKDPETLANLVV 248 (292)
Q Consensus 221 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 248 (292)
...+++..-.++|+.+|+||..+..+-.
T Consensus 25 ~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~ 52 (85)
T 2ca5_A 25 TLQGELTLALDKLAKNPSNPQLLAEYQS 52 (85)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555566677788999887766543
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.94 E-value=2.8e+02 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHhHhhCCCC
Q 022777 185 GSKIQEAYLIFQDFSEKYPMT 205 (292)
Q Consensus 185 ~~~~~~A~~~~~~~~~~~p~~ 205 (292)
+|.+++|..++++....+|.+
T Consensus 127 k~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 127 NKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp TTCHHHHHHHHHHHSTTCGGG
T ss_pred hcchHHHHHHHHHHhcCCCCc
Confidence 344666666666655544433
No 314
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=22.40 E-value=1.6e+02 Score=18.79 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--hcCCc-HHHHHHHHHhhCCCChh
Q 022777 222 FDEAEGLLLDALNKDAKDPETLANLVVCSL--HQGKS-TSRYLNQLKLTHPDHML 273 (292)
Q Consensus 222 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~-a~~~~~~~~~~~P~~~~ 273 (292)
+++|+.++.++-....++|+.+...-.+.. +.++. ....++++..+.-+||.
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpd 58 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPD 58 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHH
Confidence 345555555555555555555444333322 22222 55555555555555553
No 315
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.17 E-value=3.8e+02 Score=23.13 Aligned_cols=69 Identities=13% Similarity=-0.012 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHhHhh-----CCCCHHHHHHHHHHHHhcCCHH
Q 022777 149 MHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEK-----YPMTGLILNGKAVCCMHMGNFD 223 (292)
Q Consensus 149 ~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~g~~~ 223 (292)
..+|..|+..+-.+.++.|.+- ...++.+|.+++.. .......|..+|.++.+.+++.
T Consensus 251 L~rYPmALgnLgDLEe~~pt~g-----------------r~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~r 313 (472)
T 3re2_A 251 IKTYPMAIANLGDLEEISPTPG-----------------RPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYY 313 (472)
T ss_dssp TTTCHHHHHHHHHHHHHSCCTT-----------------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHH
T ss_pred hhhCchhhcchhhHHhcCCCCC-----------------CCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHH
Confidence 4566667777777766665431 01133333333221 2345667888999999999999
Q ss_pred HHHHHHHHHHh
Q 022777 224 EAEGLLLDALN 234 (292)
Q Consensus 224 ~A~~~~~~al~ 234 (292)
+|.+..-++-.
T Consensus 314 eAl~~WA~Aa~ 324 (472)
T 3re2_A 314 EAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 316
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=21.24 E-value=57 Score=17.49 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=6.8
Q ss_pred HHHHHHHHhhc
Q 022777 281 DESFERALQSV 291 (292)
Q Consensus 281 ~~~~~~~~~~~ 291 (292)
-+.||+|+++|
T Consensus 15 IKayDKAVaSf 25 (37)
T 3s6n_M 15 IKAYDKAVASF 25 (37)
T ss_pred HHHHHHHHHHH
Confidence 34566776665
No 317
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.80 E-value=5.2e+02 Score=24.12 Aligned_cols=104 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhcCCchhHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcccc
Q 022777 108 TLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSK 187 (292)
Q Consensus 108 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 187 (292)
......|.-....|++++|+. +|...|+++.++.++.++ +..+......+.+.
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~----------------LY~La~~~d~vl~lln~~-----------Ls~~l~~~~~~~~~ 496 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSIL----------------LYQLAEEYDIVITLVNSL-----------LSDTLSASDLDQPL 496 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH----------------HHHHTTCHHHHHHHHHHH-----------HHHHHHHSCTTSCS
T ss_pred HHHHHHHHHHHHCCCHHHHHH----------------HHHHhcCHHHHHHHHHHH-----------HHHHhccccccccc
Q ss_pred HH-------HHHHHHHHhHhhCCCC--------------HHHHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCC
Q 022777 188 IQ-------EAYLIFQDFSEKYPMT--------------GLILNGKAVCC--MHMGNFDEAEGLLLDALNKDAKD 239 (292)
Q Consensus 188 ~~-------~A~~~~~~~~~~~p~~--------------~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 239 (292)
.. .=....+++.+....+ ...+..+..+. .+.|+|+.|+..+++ +.+-|-+
T Consensus 497 ~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 497 VGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp SCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred ccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
No 318
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.54 E-value=1.3e+02 Score=19.39 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH--hcCCc-HHHHHHHHHhhCCCCh
Q 022777 223 DEAEGLLLDALNKDAKDPETLANLVVCSL--HQGKS-TSRYLNQLKLTHPDHM 272 (292)
Q Consensus 223 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~-a~~~~~~~~~~~P~~~ 272 (292)
++|+.++.++-....++|+.+...-.++. +.++. ...++.++..+.-+||
T Consensus 11 ~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hp 63 (80)
T 2cr7_A 11 EDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHP 63 (80)
T ss_dssp CCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCH
Confidence 34555555554444445544433333321 12222 4455555555544554
Done!