Query 022778
Match_columns 292
No_of_seqs 248 out of 1456
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 2.4E-40 5.3E-45 309.6 13.1 153 2-154 121-276 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 1.9E-35 4.2E-40 276.2 13.1 155 2-174 117-277 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 4.4E-33 9.5E-38 239.7 10.8 119 1-120 55-173 (174)
4 KOG1313 DHHC-type Zn-finger pr 100.0 8.8E-33 1.9E-37 250.5 8.8 143 3-146 111-278 (309)
5 KOG1314 DHHC-type Zn-finger pr 100.0 1.2E-29 2.5E-34 236.6 9.1 149 3-154 100-273 (414)
6 COG5273 Uncharacterized protei 100.0 3.9E-29 8.5E-34 235.4 10.4 114 2-119 117-231 (309)
7 KOG1312 DHHC-type Zn-finger pr 99.9 1.6E-27 3.4E-32 217.5 7.0 120 2-121 156-291 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 1.2E-23 2.7E-28 208.7 3.8 135 1-142 427-583 (600)
9 KOG1311 DHHC-type Zn-finger pr 95.2 0.071 1.5E-06 50.0 7.7 42 7-48 112-164 (299)
10 PF01529 zf-DHHC: DHHC palmito 92.0 1.1 2.3E-05 38.1 8.5 59 5-63 45-114 (174)
11 KOG0509 Ankyrin repeat and DHH 74.2 1.5 3.2E-05 45.2 1.2 52 3-55 334-385 (600)
12 COG5273 Uncharacterized protei 72.5 25 0.00055 33.5 9.0 54 7-60 108-172 (309)
13 PHA02680 ORF090 IMV phosphoryl 68.4 27 0.00058 27.3 6.6 40 71-118 42-81 (91)
14 KOG1315 Predicted DHHC-type Zn 66.5 38 0.00082 32.4 8.8 31 7-37 108-138 (307)
15 PF10749 DUF2534: Protein of u 59.0 74 0.0016 24.6 7.4 17 34-50 9-25 (85)
16 KOG1398 Uncharacterized conser 51.7 15 0.00033 36.3 3.3 23 6-34 12-34 (460)
17 PF10864 DUF2663: Protein of u 45.3 1.1E+02 0.0024 25.7 7.1 17 39-55 23-39 (130)
18 PF01528 Herpes_glycop: Herpes 43.1 1.6E+02 0.0035 29.0 9.0 36 99-134 164-200 (374)
19 PF07297 DPM2: Dolichol phosph 43.1 1.5E+02 0.0032 22.7 7.3 26 44-69 9-34 (78)
20 PHA02898 virion envelope prote 41.4 98 0.0021 24.3 5.7 27 94-120 56-83 (92)
21 PF14127 DUF4294: Domain of un 39.6 24 0.00053 30.5 2.4 37 109-149 103-139 (157)
22 PF09889 DUF2116: Uncharacteri 39.3 25 0.00055 25.4 2.1 17 9-25 4-20 (59)
23 KOG3183 Predicted Zn-finger pr 35.7 18 0.00039 33.3 1.1 10 20-29 40-49 (250)
24 TIGR02484 CitB CitB domain pro 32.4 1.7E+02 0.0037 28.8 7.2 15 9-27 48-62 (372)
25 KOG2927 Membrane component of 30.5 77 0.0017 31.0 4.4 26 6-31 159-185 (372)
26 PF08600 Rsm1: Rsm1-like; Int 29.3 27 0.0006 27.1 1.0 25 8-32 19-65 (91)
27 PF14015 DUF4231: Protein of u 29.1 2.7E+02 0.0059 21.5 7.9 22 109-130 79-103 (112)
28 PF07062 Clc-like: Clc-like; 28.0 2.4E+02 0.0052 25.5 7.0 10 15-24 65-74 (211)
29 cd00546 QFR_TypeD_subunitC Qui 27.1 2.7E+02 0.0058 23.2 6.5 21 72-92 54-74 (124)
30 PRK15103 paraquat-inducible me 26.2 5.9E+02 0.013 25.3 10.0 28 10-37 223-250 (419)
31 PRK13603 fumarate reductase su 26.2 3E+02 0.0064 23.0 6.6 20 73-92 55-74 (126)
32 PRK04987 fumarate reductase su 25.6 2.9E+02 0.0063 23.2 6.5 21 72-92 58-78 (130)
33 PF01534 Frizzled: Frizzled/Sm 25.4 3.2E+02 0.007 26.3 7.8 29 86-115 229-257 (328)
34 PRK06231 F0F1 ATP synthase sub 24.4 3.4E+02 0.0074 24.1 7.3 32 72-103 39-70 (205)
35 COG5578 Predicted integral mem 24.3 3.6E+02 0.0078 24.4 7.3 27 96-122 179-205 (208)
36 PF01363 FYVE: FYVE zinc finge 24.0 19 0.00041 25.9 -0.7 13 6-18 23-35 (69)
37 PRK13743 conjugal transfer pro 23.8 4.4E+02 0.0096 22.2 7.2 23 37-59 38-60 (141)
38 PF05297 Herpes_LMP1: Herpesvi 22.9 28 0.00061 33.2 0.0 17 246-262 318-334 (381)
39 PRK15033 tricarballylate utili 22.7 2.3E+02 0.0049 28.2 6.2 15 9-27 67-81 (389)
40 COG3477 Predicted periplasmic/ 22.3 2.8E+02 0.006 24.3 5.9 33 100-143 116-148 (176)
41 PF11014 DUF2852: Protein of u 22.3 1.4E+02 0.0029 24.6 3.9 22 80-101 8-29 (115)
42 PF06637 PV-1: PV-1 protein (P 22.3 1E+02 0.0023 30.4 3.7 18 38-55 26-43 (442)
43 COG2935 Putative arginyl-tRNA: 21.1 37 0.00081 31.5 0.4 14 2-19 59-72 (253)
44 smart00064 FYVE Protein presen 20.7 46 0.001 23.8 0.8 13 6-18 24-36 (68)
45 PRK15103 paraquat-inducible me 20.1 5.7E+02 0.012 25.4 8.6 13 24-36 32-44 (419)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=309.62 Aligned_cols=153 Identities=39% Similarity=0.733 Sum_probs=129.9
Q ss_pred cccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhh--hhhcc
Q 022778 2 HYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIW--KAMTK 79 (292)
Q Consensus 2 i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~~~~~w--~~~~~ 79 (292)
++||||||||++||+||+||||||||+|||||+||||||++|++++++++++.++++++.+...........+ .....
T Consensus 121 ~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (299)
T KOG1311|consen 121 LYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAG 200 (299)
T ss_pred ccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 6899999999999999999999999999999999999999999999999999999998887765554433333 23334
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-ccCCCCCCCChHHHHHHHHhcCCCCCCCCccccc
Q 022778 80 SPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRN-RYDEHVNPYNKGVIKNFMEVFCTSIPTSKNNFRA 154 (292)
Q Consensus 80 ~~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r~-r~~~~~NPYd~G~~~Nl~evfg~~~~ps~~~fr~ 154 (292)
....++++++++++++++++|+.||+|+|.+|+||+|.++. +.+.+.+||++|.++|++++||.+.+++......
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~p~~ 276 (299)
T KOG1311|consen 201 TFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLSWLSPFA 276 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCcccccccc
Confidence 45566777889999999999999999999999999999984 4444469999999999999999998876655443
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=276.24 Aligned_cols=155 Identities=35% Similarity=0.703 Sum_probs=116.3
Q ss_pred cccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCc--hhhhhhhcc
Q 022778 2 HYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGEN--VSIWKAMTK 79 (292)
Q Consensus 2 i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~~--~~~w~~~~~ 79 (292)
.|||||||||++|++||+||||||||+|||||.+|||||++|++|+++.++|.++.....+........ ...+
T Consensus 117 ~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~~~~~~~----- 191 (307)
T KOG1315|consen 117 CIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGAGPSSLL----- 191 (307)
T ss_pred cccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhH-----
Confidence 589999999999999999999999999999999999999999999999999988877766655442110 0001
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc----cCCCCCCCChHHHHHHHHhcCCCCCCCCcccccc
Q 022778 80 SPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNR----YDEHVNPYNKGVIKNFMEVFCTSIPTSKNNFRAK 155 (292)
Q Consensus 80 ~~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r~r----~~~~~NPYd~G~~~Nl~evfg~~~~ps~~~fr~~ 155 (292)
....+++++..+.+.+.+++|+++|+|||++|+||+|.++.. .....+.|+. ..|+.|+||.++ ..|+
T Consensus 192 ~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~--~~n~~~vfg~~~------~~wl 263 (307)
T KOG1315|consen 192 LFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNL--YVNFREVFGSNL------LYWL 263 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcce--eecHHHHhCCCc------eEEe
Confidence 111233344455555666779999999999999999998754 2244567776 889999999753 5677
Q ss_pred CCCCCCCcccccCCCCCCC
Q 022778 156 IPKEPAITSRRISGGFTSP 174 (292)
Q Consensus 156 vp~~~~~~~~~~~~g~~~p 174 (292)
+|.+. +.++|...|
T Consensus 264 ~P~~~-----s~~~~~~~~ 277 (307)
T KOG1315|consen 264 LPIDS-----SWGDGVSFP 277 (307)
T ss_pred ccccC-----ccccCcccc
Confidence 77633 334555554
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=4.4e-33 Score=239.72 Aligned_cols=119 Identities=39% Similarity=0.815 Sum_probs=96.8
Q ss_pred CcccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhhhhccc
Q 022778 1 MHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIWKAMTKS 80 (292)
Q Consensus 1 ~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~~~~~w~~~~~~ 80 (292)
.++||+|||||+.||+||+||||||+|+|+|||.+|||+|++|+++.++++++.++.++.++...........+.. ...
T Consensus 55 ~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 133 (174)
T PF01529_consen 55 KIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWI-FSN 133 (174)
T ss_pred CCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-chh
Confidence 3689999999999999999999999999999999999999999999999999988887777665443322221111 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Q 022778 81 PASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRN 120 (292)
Q Consensus 81 ~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r~ 120 (292)
...+++++++++.+++++.|+++|+++|++|+||+|.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 134 FSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 1125667777888888999999999999999999999875
No 4
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.98 E-value=8.8e-33 Score=250.50 Aligned_cols=143 Identities=34% Similarity=0.626 Sum_probs=108.4
Q ss_pred ccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-Cchh--------h
Q 022778 3 YRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNG-ENVS--------I 73 (292)
Q Consensus 3 ~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~-~~~~--------~ 73 (292)
+||||+|||++||+||++|||||||+|||||..||||||+|++|+++.+.|+.+++.+........ ..++ .
T Consensus 111 pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~tay~~d~~h~ 190 (309)
T KOG1313|consen 111 PKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITAYASDVAHV 190 (309)
T ss_pred CCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcccccCccccc
Confidence 799999999999999999999999999999999999999999999999999888765444332211 0000 0
Q ss_pred h---------hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc-------cCCCCCCCChHHHHHH
Q 022778 74 W---------KAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNR-------YDEHVNPYNKGVIKNF 137 (292)
Q Consensus 74 w---------~~~~~~~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r~r-------~~~~~NPYd~G~~~Nl 137 (292)
| ..+..+ ....+.+.++..++.++.|+.+|.++|.+|.|.+|..... .+.+.|||+.|..+||
T Consensus 191 ~Pp~~i~r~~~~i~~t-~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~~n~g~k~nW 269 (309)
T KOG1313|consen 191 APPPSILRVYKNITRT-SIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNPTNFGGKANW 269 (309)
T ss_pred CCChhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCCcccchHHHH
Confidence 0 011000 1122444555667778999999999999999999987432 2456899999999999
Q ss_pred HHhcCCCCC
Q 022778 138 MEVFCTSIP 146 (292)
Q Consensus 138 ~evfg~~~~ 146 (292)
+.++|-..-
T Consensus 270 r~fLg~~~~ 278 (309)
T KOG1313|consen 270 RNFLGLFRG 278 (309)
T ss_pred HHhhccccC
Confidence 999986543
No 5
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=236.60 Aligned_cols=149 Identities=28% Similarity=0.521 Sum_probs=100.9
Q ss_pred ccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHH---HH-Hhhhhhh----hcCCchhhh
Q 022778 3 YRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHA---FC-WIRIRKI----MNGENVSIW 74 (292)
Q Consensus 3 ~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~---~s-~~~i~~~----~~~~~~~~w 74 (292)
|||||||||+.||+||.+|||||||+|||||..||.||+.||++..+.|+-..+ ++ +-.++.. +...+...
T Consensus 100 YKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~- 178 (414)
T KOG1314|consen 100 YKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPI- 178 (414)
T ss_pred cCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCce-
Confidence 899999999999999999999999999999999999999999999987663221 11 1111111 11111110
Q ss_pred hhhcccchhHHHHH----HHHHHHHHHHHHHHHHHHHHhhccchhhhhh-----hc--c------CCCCCCCChHHHHHH
Q 022778 75 KAMTKSPASIALII----YTFISVWFVGGLTVFHSYLISRNQSTYENFR-----NR--Y------DEHVNPYNKGVIKNF 137 (292)
Q Consensus 75 ~~~~~~~~~i~lli----~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r-----~r--~------~~~~NPYd~G~~~Nl 137 (292)
..-...+++.++ +.+..++.++.|+..|+..|.+|+|.+|.+- .| + ++...|||.|+..|+
T Consensus 179 --v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~ 256 (414)
T KOG1314|consen 179 --VFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINL 256 (414)
T ss_pred --eeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccH
Confidence 111122233222 3334445567888999999999999999863 11 1 223579999988899
Q ss_pred HHhcCCCCCCCCccccc
Q 022778 138 MEVFCTSIPTSKNNFRA 154 (292)
Q Consensus 138 ~evfg~~~~ps~~~fr~ 154 (292)
++||.....+-.+.-.|
T Consensus 257 r~vf~~~~~~~gdg~~w 273 (414)
T KOG1314|consen 257 REVFFQNKKEEGDGIEW 273 (414)
T ss_pred HHHhhhccccCCCCccc
Confidence 99998764433333333
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.96 E-value=3.9e-29 Score=235.41 Aligned_cols=114 Identities=38% Similarity=0.719 Sum_probs=89.5
Q ss_pred cccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCc-hhhhhhhccc
Q 022778 2 HYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGEN-VSIWKAMTKS 80 (292)
Q Consensus 2 i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~~-~~~w~~~~~~ 80 (292)
+|||||||||+.||+||+||||||||+|||||.+|||+|++||+++.+.++++++..++++....+... ...+...
T Consensus 117 ~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (309)
T COG5273 117 IYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICF--- 193 (309)
T ss_pred cccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHH---
Confidence 699999999999999999999999999999999999999999999999999988888888776654332 2222110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Q 022778 81 PASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFR 119 (292)
Q Consensus 81 ~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~r 119 (292)
.......+....++++..++.++.+++..|+||+|...
T Consensus 194 -li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~ 231 (309)
T COG5273 194 -LIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQ 231 (309)
T ss_pred -HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 00111233344456677889999999999999999775
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.94 E-value=1.6e-27 Score=217.52 Aligned_cols=120 Identities=33% Similarity=0.705 Sum_probs=82.8
Q ss_pred cccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-c----hhhhhh
Q 022778 2 HYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-N----VSIWKA 76 (292)
Q Consensus 2 i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~-~----~~~w~~ 76 (292)
+.||.||||||+||+||+||||||.|+|||||.+|+|||++||++...++.|.++-.++.....+.+. + .+.|-.
T Consensus 156 i~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ilt~~~g 235 (341)
T KOG1312|consen 156 IRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVYILTLGHG 235 (341)
T ss_pred CCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchheeeeeeeec
Confidence 67999999999999999999999999999999999999999999998888887765554422222111 1 011111
Q ss_pred hcccchhHH-HHHH---------HHH-HHHHHHHHHHHHHHHHhhccchhhhhhhc
Q 022778 77 MTKSPASIA-LIIY---------TFI-SVWFVGGLTVFHSYLISRNQSTYENFRNR 121 (292)
Q Consensus 77 ~~~~~~~i~-lli~---------~~l-~~~fv~~L~~fhlyLI~~N~TT~E~~r~r 121 (292)
..+....++ .++. ++. ...++++...|-+|+-++|+||.|+.+.+
T Consensus 236 ~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d 291 (341)
T KOG1312|consen 236 HVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGD 291 (341)
T ss_pred chhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccc
Confidence 111111111 1111 111 22356778888899999999999998754
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.88 E-value=1.2e-23 Score=208.73 Aligned_cols=135 Identities=29% Similarity=0.679 Sum_probs=95.0
Q ss_pred CcccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhhhhccc
Q 022778 1 MHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIWKAMTKS 80 (292)
Q Consensus 1 ~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~~~s~~~i~~~~~~~~~~~w~~~~~~ 80 (292)
+++||.|++||++||+||.||||||||++||||.+|||+|+.|+++....+.+.++.+..++....... ..|....
T Consensus 427 lirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~--~~~~~~l-- 502 (600)
T KOG0509|consen 427 LIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENAS--TIYVGFL-- 502 (600)
T ss_pred eeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHH--
Confidence 478999999999999999999999999999999999999999999999888888877777765433211 2222110
Q ss_pred chhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhccchhhhhhhcc--------CCCCCCCChHHHHHHH
Q 022778 81 PASIALIIYTF--------------ISVWFVGGLTVFHSYLISRNQSTYENFRNRY--------DEHVNPYNKGVIKNFM 138 (292)
Q Consensus 81 ~~~i~lli~~~--------------l~~~fv~~L~~fhlyLI~~N~TT~E~~r~r~--------~~~~NPYd~G~~~Nl~ 138 (292)
+.+..+.. -..+-.+...+.|...++.+.||+|.++.+. ....+|++.|+.+|+.
T Consensus 503 ---~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~ 579 (600)
T KOG0509|consen 503 ---IAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLV 579 (600)
T ss_pred ---HHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcch
Confidence 01111110 0011112223344456889999999885432 2236899999999999
Q ss_pred HhcC
Q 022778 139 EVFC 142 (292)
Q Consensus 139 evfg 142 (292)
+++-
T Consensus 580 df~~ 583 (600)
T KOG0509|consen 580 DFFL 583 (600)
T ss_pred heee
Confidence 9883
No 9
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=95.21 E-value=0.071 Score=50.03 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=35.5
Q ss_pred CCCCCcccCccccCCcccccccCCcccccch-----------HHHHHHHHHHH
Q 022778 7 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNY-----------RFFFMFVFSTT 48 (292)
Q Consensus 7 Rs~HCs~C~~CV~rfDHHCpWvgnCIG~rNy-----------r~F~lFL~~~t 48 (292)
+.++|..|+..+.+.-|||..-|+||-.+-| |-+-.|+.++.
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 3799999999999999999999999988744 55668885555
No 10
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=91.97 E-value=1.1 Score=38.15 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=41.7
Q ss_pred CCCCCCCcccCccccCCcccccccCCcccccchHHH-----------HHHHHHHHHHHHHHHHHHHhhhh
Q 022778 5 PPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFF-----------FMFVFSTTLLCIYVHAFCWIRIR 63 (292)
Q Consensus 5 PpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F-----------~lFL~~~tl~~i~~~~~s~~~i~ 63 (292)
....++|..|+.=....-|||..-+.||-...|-=. -.|++++...+++.++.....+.
T Consensus 45 ~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~ 114 (174)
T PF01529_consen 45 NGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLY 114 (174)
T ss_pred CCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999998888889999999999988877533 25666555555555554444433
No 11
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=74.24 E-value=1.5 Score=45.18 Aligned_cols=52 Identities=10% Similarity=-0.148 Sum_probs=39.3
Q ss_pred ccCCCCCCCcccCccccCCcccccccCCcccccchHHHHHHHHHHHHHHHHHH
Q 022778 3 YRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVH 55 (292)
Q Consensus 3 ~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFL~~~tl~~i~~~ 55 (292)
.++-+..+|..|-.|+..|++||+|+. ||+.+|-..|.++.+...+..++.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~~f 385 (600)
T KOG0509|consen 334 VGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFITF 385 (600)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999 9999998766544443333333333
No 12
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=72.50 E-value=25 Score=33.48 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCCcccCccccCCcccccccCCcccccchH-----------HHHHHHHHHHHHHHHHHHHHHh
Q 022778 7 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNYR-----------FFFMFVFSTTLLCIYVHAFCWI 60 (292)
Q Consensus 7 Rs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr-----------~F~lFL~~~tl~~i~~~~~s~~ 60 (292)
+.+.|+.|+.-....-|||.--|.||-+.-|. -.=.|+.++.......+++.+.
T Consensus 108 ~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~ 172 (309)
T COG5273 108 TENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLS 172 (309)
T ss_pred cceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888889999999998777553 2335666555444444444333
No 13
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=68.42 E-value=27 Score=27.32 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=23.0
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 022778 71 VSIWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENF 118 (292)
Q Consensus 71 ~~~w~~~~~~~~~i~lli~~~l~~~fv~~L~~fhlyLI~~N~TT~E~~ 118 (292)
...|+++. ++.++.. +..+.++++|-.|--++..+++|.+
T Consensus 42 ~~~wRalS-----ii~FIlG---~vl~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 42 DYVWRALS-----VTCFIVG---AVLLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred chhHHHHH-----HHHHHHH---HHHHHHHHHHHHhcccCCCceeecc
Confidence 56787652 3333322 2334457777777777777777654
No 14
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=66.49 E-value=38 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.9
Q ss_pred CCCCCcccCccccCCcccccccCCcccccch
Q 022778 7 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNY 37 (292)
Q Consensus 7 Rs~HCs~C~~CV~rfDHHCpWvgnCIG~rNy 37 (292)
+.+.|..|+.-....-|||.--+.||.+.-|
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDH 138 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDH 138 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhcccc
Confidence 6788999999999999999999999998755
No 15
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=59.04 E-value=74 Score=24.62 Aligned_cols=17 Identities=6% Similarity=0.164 Sum_probs=10.9
Q ss_pred ccchHHHHHHHHHHHHH
Q 022778 34 LRNYRFFFMFVFSTTLL 50 (292)
Q Consensus 34 ~rNyr~F~lFL~~~tl~ 50 (292)
.+|-|.|+.-+....+.
T Consensus 9 ~~~~kkFl~~l~~vfii 25 (85)
T PF10749_consen 9 TKEGKKFLLALAIVFII 25 (85)
T ss_pred ChhhhHHHHHHHHHHHH
Confidence 46778887666554443
No 16
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.69 E-value=15 Score=36.26 Aligned_cols=23 Identities=43% Similarity=0.947 Sum_probs=18.3
Q ss_pred CCCCCCcccCccccCCcccccccCCcccc
Q 022778 6 PRCSHCSICNNCVQKFDHHCPWVGQCIGL 34 (292)
Q Consensus 6 pRs~HCs~C~~CV~rfDHHCpWvgnCIG~ 34 (292)
.|..||..|+. +|| +|+.+|||.
T Consensus 12 ~~p~l~~tC~e----~~h--~w~~~c~ga 34 (460)
T KOG1398|consen 12 ARPSLAETCDE----ADH--SWVANCIGA 34 (460)
T ss_pred cCchHhhhhhh----ccC--CcccchhHH
Confidence 46788888875 566 699999986
No 17
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=45.25 E-value=1.1e+02 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.721 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022778 39 FFFMFVFSTTLLCIYVH 55 (292)
Q Consensus 39 ~F~lFL~~~tl~~i~~~ 55 (292)
++.+++++++++++|+.
T Consensus 23 ~~~~~l~~~~~~~~y~~ 39 (130)
T PF10864_consen 23 WQWLFLFSLFLFFIYFY 39 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 18
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=43.15 E-value=1.6e+02 Score=28.97 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhccchhhhhhhccCCCC-CCCChHHH
Q 022778 99 GLTVFHSYLISRNQSTYENFRNRYDEHV-NPYNKGVI 134 (292)
Q Consensus 99 ~L~~fhlyLI~~N~TT~E~~r~r~~~~~-NPYd~G~~ 134 (292)
.++.|-.+++.+|+++.+.-+....-++ +|-=+|..
T Consensus 164 ~~~~f~~~~~tr~~s~~~~~~~~~~l~~~~p~L~~~v 200 (374)
T PF01528_consen 164 CSTVFTVSFITRGSSSWTYARSEFQLPKIHPKLHRVV 200 (374)
T ss_pred HHHHHHHHHHhCCCcHhHHHHHHhhhhhcChHHHHHH
Confidence 3455666788999997665443333233 55444433
No 19
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=43.14 E-value=1.5e+02 Score=22.68 Aligned_cols=26 Identities=8% Similarity=0.349 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCC
Q 022778 44 VFSTTLLCIYVHAFCWIRIRKIMNGE 69 (292)
Q Consensus 44 L~~~tl~~i~~~~~s~~~i~~~~~~~ 69 (292)
+.....+.+|..+..|+.+.-..+.+
T Consensus 9 ~~l~~a~~vF~YYt~WvlllPFvd~d 34 (78)
T PF07297_consen 9 LMLAVALSVFTYYTIWVLLLPFVDED 34 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 33344445556666666555444433
No 20
>PHA02898 virion envelope protein; Provisional
Probab=41.36 E-value=98 Score=24.30 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHH-Hhhccchhhhhhh
Q 022778 94 VWFVGGLTVFHSYL-ISRNQSTYENFRN 120 (292)
Q Consensus 94 ~~fv~~L~~fhlyL-I~~N~TT~E~~r~ 120 (292)
+..+.++++|-.|- -+++.++.|.-|+
T Consensus 56 ivl~lG~~ifs~y~r~C~~~~~~e~~ry 83 (92)
T PHA02898 56 IILILGIIFFKGYNMFCGGNTTDEVSRY 83 (92)
T ss_pred HHHHHHHHHHHHHhhhcCCCccccccee
Confidence 33455677777777 5677777775443
No 21
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=39.65 E-value=24 Score=30.48 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.1
Q ss_pred hhccchhhhhhhccCCCCCCCChHHHHHHHHhcCCCCCCCC
Q 022778 109 SRNQSTYENFRNRYDEHVNPYNKGVIKNFMEVFCTSIPTSK 149 (292)
Q Consensus 109 ~~N~TT~E~~r~r~~~~~NPYd~G~~~Nl~evfg~~~~ps~ 149 (292)
-+|+|++|.++ ....++.-|+++.+.-+||.+...-+
T Consensus 103 etg~TsyelIK----~~rgg~~A~~~q~~A~~Fg~sLK~~Y 139 (157)
T PF14127_consen 103 ETGSTSYELIK----ELRGGWRAFWYQTFAWLFGISLKKEY 139 (157)
T ss_pred hcCCcHHHHHH----HhhCChhHHHHHHHHHHhCcccccCC
Confidence 48999999987 45689999999999999998875433
No 22
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=39.26 E-value=25 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.831 Sum_probs=12.1
Q ss_pred CCCcccCccccCCcccc
Q 022778 9 SHCSICNNCVQKFDHHC 25 (292)
Q Consensus 9 ~HCs~C~~CV~rfDHHC 25 (292)
+||..||.=|..=-..|
T Consensus 4 kHC~~CG~~Ip~~~~fC 20 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFC 20 (59)
T ss_pred CcCCcCCCcCCcchhhh
Confidence 68888888777544555
No 23
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=35.73 E-value=18 Score=33.34 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=8.1
Q ss_pred CCcccccccC
Q 022778 20 KFDHHCPWVG 29 (292)
Q Consensus 20 rfDHHCpWvg 29 (292)
+.+|||||..
T Consensus 40 ye~H~Cp~~~ 49 (250)
T KOG3183|consen 40 YESHHCPKGL 49 (250)
T ss_pred HhhcCCCccc
Confidence 4599999984
No 24
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=32.39 E-value=1.7e+02 Score=28.82 Aligned_cols=15 Identities=33% Similarity=1.035 Sum_probs=11.8
Q ss_pred CCCcccCccccCCcccccc
Q 022778 9 SHCSICNNCVQKFDHHCPW 27 (292)
Q Consensus 9 ~HCs~C~~CV~rfDHHCpW 27 (292)
..|..|+.| +|+||.
T Consensus 48 ~lChnC~~C----~~~CPy 62 (372)
T TIGR02484 48 HLCHDCQSC----WHDCQY 62 (372)
T ss_pred HHCcCcccc----cccCcC
Confidence 568888888 478998
No 25
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=77 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=12.8
Q ss_pred CCCCCCcccCcc-ccCCcccccccCCc
Q 022778 6 PRCSHCSICNNC-VQKFDHHCPWVGQC 31 (292)
Q Consensus 6 pRs~HCs~C~~C-V~rfDHHCpWvgnC 31 (292)
-+..||-+-..= -..-|-|-.|+-.-
T Consensus 159 kk~~~l~i~~dQ~F~d~de~YVW~yep 185 (372)
T KOG2927|consen 159 KKKFELEIHDDQAFQDGDEHYVWIYEP 185 (372)
T ss_pred cCccceeeccchhhcccCceEEEeccC
Confidence 334444444222 22337788888543
No 26
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=29.25 E-value=27 Score=27.12 Aligned_cols=25 Identities=36% Similarity=0.845 Sum_probs=17.8
Q ss_pred CCCCcccCccc----------------cCCc------ccccccCCcc
Q 022778 8 CSHCSICNNCV----------------QKFD------HHCPWVGQCI 32 (292)
Q Consensus 8 s~HCs~C~~CV----------------~rfD------HHCpWvgnCI 32 (292)
.-+|..|.|.| ..|| .||||++.-.
T Consensus 19 ~~~C~~C~Rr~GLW~f~~~~ss~~~~~~~~d~~~eHr~~CPwv~~~~ 65 (91)
T PF08600_consen 19 LLSCSYCFRRLGLWMFKSKESSDSDPMSPFDPLEEHREYCPWVNPST 65 (91)
T ss_pred eEEccccCcEeeeeecccCccCCCCcCCCCCCcccccccCCccCCcc
Confidence 45788888884 1233 7899998754
No 27
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=29.13 E-value=2.7e+02 Score=21.48 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=13.3
Q ss_pred hhccchhhhhhh---ccCCCCCCCC
Q 022778 109 SRNQSTYENFRN---RYDEHVNPYN 130 (292)
Q Consensus 109 ~~N~TT~E~~r~---r~~~~~NPYd 130 (292)
.++++|-|.+|. ++..+.-||+
T Consensus 79 ~~~r~tae~lk~e~~~~~~~~~~Y~ 103 (112)
T PF14015_consen 79 IRYRATAESLKREKWLYLAGAGPYK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 467778887753 3444455664
No 28
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=27.97 E-value=2.4e+02 Score=25.49 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=7.8
Q ss_pred CccccCCccc
Q 022778 15 NNCVQKFDHH 24 (292)
Q Consensus 15 ~~CV~rfDHH 24 (292)
..|+.|||+.
T Consensus 65 ~~C~ykFd~~ 74 (211)
T PF07062_consen 65 LHCTYKFDYD 74 (211)
T ss_pred ceEEEEcCcc
Confidence 6789999853
No 29
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=27.08 E-value=2.7e+02 Score=23.20 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=11.7
Q ss_pred hhhhhhcccchhHHHHHHHHH
Q 022778 72 SIWKAMTKSPASIALIIYTFI 92 (292)
Q Consensus 72 ~~w~~~~~~~~~i~lli~~~l 92 (292)
.-|..+.++|..+++-+.+++
T Consensus 54 ~~f~~flqnPiv~~lniiaL~ 74 (124)
T cd00546 54 AGFVSFLQNPIVVLLNIIALA 74 (124)
T ss_pred HHHHHHHhCcHHHHHHHHHHH
Confidence 345566677765555444443
No 30
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=26.21 E-value=5.9e+02 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=17.6
Q ss_pred CCcccCccccCCcccccccCCcccccch
Q 022778 10 HCSICNNCVQKFDHHCPWVGQCIGLRNY 37 (292)
Q Consensus 10 HCs~C~~CV~rfDHHCpWvgnCIG~rNy 37 (292)
.|..||-=+.....+||=-+.-.-.+..
T Consensus 223 ~C~~Cd~l~~~~~a~CpRC~~~L~~~~~ 250 (419)
T PRK15103 223 SCSCCTAILPADQPVCPRCHTKGYVRRR 250 (419)
T ss_pred cCCCCCCCCCCCCCCCCCCCCcCcCCCC
Confidence 4777777555555578877766644443
No 31
>PRK13603 fumarate reductase subunit C; Provisional
Probab=26.18 E-value=3e+02 Score=23.02 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=11.1
Q ss_pred hhhhhcccchhHHHHHHHHH
Q 022778 73 IWKAMTKSPASIALIIYTFI 92 (292)
Q Consensus 73 ~w~~~~~~~~~i~lli~~~l 92 (292)
-|..+.++|..+++-+.+++
T Consensus 55 ~f~~flqnPivv~lniiaL~ 74 (126)
T PRK13603 55 RFLDFSANPVVVVLNVVALS 74 (126)
T ss_pred HHHHHHhCcHHHHHHHHHHH
Confidence 45556677765555444443
No 32
>PRK04987 fumarate reductase subunit C; Provisional
Probab=25.57 E-value=2.9e+02 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=11.6
Q ss_pred hhhhhhcccchhHHHHHHHHH
Q 022778 72 SIWKAMTKSPASIALIIYTFI 92 (292)
Q Consensus 72 ~~w~~~~~~~~~i~lli~~~l 92 (292)
.-|..+.++|..+++-+.+++
T Consensus 58 ~~f~~flqnPiv~~lniiaL~ 78 (130)
T PRK04987 58 AGFVSFLQNPIVVILNIITLA 78 (130)
T ss_pred HHHHHHHhCcHHHHHHHHHHH
Confidence 345566677765555444443
No 33
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=25.38 E-value=3.2e+02 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 022778 86 LIIYTFISVWFVGGLTVFHSYLISRNQSTY 115 (292)
Q Consensus 86 lli~~~l~~~fv~~L~~fhlyLI~~N~TT~ 115 (292)
+.+++++.+.+....++.|+|- ..|+..+
T Consensus 229 iGiFsvly~vp~~~~i~c~~YE-~~~~~~W 257 (328)
T PF01534_consen 229 IGIFSVLYLVPALIVIACHFYE-YSNRPQW 257 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence 3444455555555667778874 3344333
No 34
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.41 E-value=3.4e+02 Score=24.10 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=14.5
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 022778 72 SIWKAMTKSPASIALIIYTFISVWFVGGLTVF 103 (292)
Q Consensus 72 ~~w~~~~~~~~~i~lli~~~l~~~fv~~L~~f 103 (292)
+++..+.+....++.-+..|+.++++...++|
T Consensus 39 ~~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~ 70 (205)
T PRK06231 39 SIINELFPNFWVFIAHLIAFSILLLLGIFLFW 70 (205)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554443344444445444444433333
No 35
>COG5578 Predicted integral membrane protein [Function unknown]
Probab=24.28 E-value=3.6e+02 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhcc
Q 022778 96 FVGGLTVFHSYLISRNQSTYENFRNRY 122 (292)
Q Consensus 96 fv~~L~~fhlyLI~~N~TT~E~~r~r~ 122 (292)
...+....+.+++.-+.++.+.++.+.
T Consensus 179 pFf~~sl~~~~~m~~~~~~f~~~~~~~ 205 (208)
T COG5578 179 PFFGISLLAFVLMWVSLTVFRKVEERL 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455667788888888888776543
No 36
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.99 E-value=19 Score=25.90 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=6.6
Q ss_pred CCCCCCcccCccc
Q 022778 6 PRCSHCSICNNCV 18 (292)
Q Consensus 6 pRs~HCs~C~~CV 18 (292)
-|-|||+.|+..|
T Consensus 23 ~rrhhCr~CG~~v 35 (69)
T PF01363_consen 23 RRRHHCRNCGRVV 35 (69)
T ss_dssp S-EEE-TTT--EE
T ss_pred eeeEccCCCCCEE
Confidence 4778999888754
No 37
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=23.83 E-value=4.4e+02 Score=22.20 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022778 37 YRFFFMFVFSTTLLCIYVHAFCW 59 (292)
Q Consensus 37 yr~F~lFL~~~tl~~i~~~~~s~ 59 (292)
-+||=+|+++++...+.-.++..
T Consensus 38 ~~Y~~LfiVFl~AG~vLw~vM~~ 60 (141)
T PRK13743 38 DIYFDLFIVFLTAGIVLWVIMHS 60 (141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 47888999888877766555543
No 38
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.89 E-value=28 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=0.0
Q ss_pred CccccCCCcccChHHHH
Q 022778 246 SWGIKSGSWDISSETFA 262 (292)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ 262 (292)
|-|-..|-=+.+.+|.+
T Consensus 318 s~GndggPp~Lt~~ve~ 334 (381)
T PF05297_consen 318 SAGNDGGPPKLTEEVEN 334 (381)
T ss_dssp -----------------
T ss_pred ccCCCCCCCcccccccc
Confidence 33444444444445444
No 39
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=22.70 E-value=2.3e+02 Score=28.16 Aligned_cols=15 Identities=33% Similarity=1.176 Sum_probs=11.6
Q ss_pred CCCcccCccccCCcccccc
Q 022778 9 SHCSICNNCVQKFDHHCPW 27 (292)
Q Consensus 9 ~HCs~C~~CV~rfDHHCpW 27 (292)
..|..|+.|. |+||.
T Consensus 67 ~~C~~Cg~C~----~~CP~ 81 (389)
T PRK15033 67 NLCHNCGACL----HACQY 81 (389)
T ss_pred HhCcCccccc----ccCcC
Confidence 3688888884 58998
No 40
>COG3477 Predicted periplasmic/secreted protein [Function unknown]
Probab=22.35 E-value=2.8e+02 Score=24.27 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhccchhhhhhhccCCCCCCCChHHHHHHHHhcCC
Q 022778 100 LTVFHSYLISRNQSTYENFRNRYDEHVNPYNKGVIKNFMEVFCT 143 (292)
Q Consensus 100 L~~fhlyLI~~N~TT~E~~r~r~~~~~NPYd~G~~~Nl~evfg~ 143 (292)
-+.+|+.++-.+-|+ ..++|+-..+++.|+||.
T Consensus 116 ~~~~H~ilmP~~~~v-----------pplw~~p~~Eh~SEifGH 148 (176)
T COG3477 116 WLFVHMILMPLMGTV-----------PPLWDLPFYEHLSEIFGH 148 (176)
T ss_pred HHHHHHHHHHhhccC-----------CCcccCcHHHHHHHHHHH
Confidence 345788888776664 347888889999999984
No 41
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.33 E-value=1.4e+02 Score=24.63 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 022778 80 SPASIALIIYTFISVWFVGGLT 101 (292)
Q Consensus 80 ~~~~i~lli~~~l~~~fv~~L~ 101 (292)
.|+.|+++|+.|+.+|.+|..+
T Consensus 8 ~~a~Ia~mVlGFi~fWPlGla~ 29 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLGLAL 29 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988876543
No 42
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.33 E-value=1e+02 Score=30.43 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022778 38 RFFFMFVFSTTLLCIYVH 55 (292)
Q Consensus 38 r~F~lFL~~~tl~~i~~~ 55 (292)
||||+|+...-.+.|..+
T Consensus 26 ryfFlF~SLIQ~LIIlgL 43 (442)
T PF06637_consen 26 RYFFLFVSLIQFLIILGL 43 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777765554444433
No 43
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.13 E-value=37 Score=31.51 Aligned_cols=14 Identities=50% Similarity=1.452 Sum_probs=11.7
Q ss_pred cccCCCCCCCcccCcccc
Q 022778 2 HYRPPRCSHCSICNNCVQ 19 (292)
Q Consensus 2 i~RPpRs~HCs~C~~CV~ 19 (292)
+||| ||..|+.|+.
T Consensus 59 ~YRP----~C~~C~aC~s 72 (253)
T COG2935 59 AYRP----HCEHCRACIS 72 (253)
T ss_pred ecCC----cccchhhhhe
Confidence 5788 8999999876
No 44
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.12 E-value=5.7e+02 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=6.8
Q ss_pred cccccCCcccccc
Q 022778 24 HCPWVGQCIGLRN 36 (292)
Q Consensus 24 HCpWvgnCIG~rN 36 (292)
+||=-|.-.-.++
T Consensus 32 ~CpRCg~~L~~~~ 44 (419)
T PRK15103 32 ACPRCGTTLTVRW 44 (419)
T ss_pred ECCCCCCCCcCCC
Confidence 4665555554443
Done!