Query 022778
Match_columns 292
No_of_seqs 248 out of 1456
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vfy_A Phosphatidylinositol-3- 28.1 14 0.00048 26.3 0.3 12 6-17 25-36 (73)
2 1x4u_A Zinc finger, FYVE domai 25.1 17 0.00059 26.5 0.3 12 6-17 28-39 (84)
3 2yw8_A RUN and FYVE domain-con 24.7 18 0.0006 26.3 0.3 11 7-17 34-44 (82)
4 1z2q_A LM5-1; membrane protein 23.9 19 0.00064 26.3 0.3 11 7-17 36-46 (84)
5 1joc_A EEA1, early endosomal a 23.3 19 0.00066 28.4 0.3 12 6-17 83-94 (125)
6 2knc_B Integrin beta-3; transm 23.0 1.4E+02 0.0047 21.6 4.9 24 95-118 24-47 (79)
7 3t7l_A Zinc finger FYVE domain 18.8 28 0.00094 25.8 0.3 11 7-17 35-45 (90)
8 1m56_D Cytochrome C oxidase; m 18.2 1.3E+02 0.0043 20.2 3.5 24 34-57 22-45 (51)
9 1y02_A CARP2, FYVE-ring finger 17.7 26 0.0009 27.6 -0.0 12 6-17 33-44 (120)
10 1wfk_A Zinc finger, FYVE domai 17.5 25 0.00086 26.0 -0.2 12 6-17 23-34 (88)
No 1
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.06 E-value=14 Score=26.26 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=9.3
Q ss_pred CCCCCCcccCcc
Q 022778 6 PRCSHCSICNNC 17 (292)
Q Consensus 6 pRs~HCs~C~~C 17 (292)
-|-|||+.|++-
T Consensus 25 ~RrHHCR~CG~v 36 (73)
T 1vfy_A 25 NRKHHCRSCGGV 36 (73)
T ss_dssp BCCEECTTTCCE
T ss_pred cccccCCCCCEE
Confidence 377999999874
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.15 E-value=17 Score=26.49 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.0
Q ss_pred CCCCCCcccCcc
Q 022778 6 PRCSHCSICNNC 17 (292)
Q Consensus 6 pRs~HCs~C~~C 17 (292)
-|-|||+.|++-
T Consensus 28 ~RrHHCR~CG~v 39 (84)
T 1x4u_A 28 KKRRSCSNCGNS 39 (84)
T ss_dssp SCCEECSSSCCE
T ss_pred hhhhhhcCCCcE
Confidence 377899988763
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.72 E-value=18 Score=26.35 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.8
Q ss_pred CCCCCcccCcc
Q 022778 7 RCSHCSICNNC 17 (292)
Q Consensus 7 Rs~HCs~C~~C 17 (292)
|-|||+.||+-
T Consensus 34 RrHHCR~CG~v 44 (82)
T 2yw8_A 34 RKHHCRNCGHI 44 (82)
T ss_dssp CCEECTTTCCE
T ss_pred ccccCCCCCCE
Confidence 67899998874
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.93 E-value=19 Score=26.34 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.7
Q ss_pred CCCCCcccCcc
Q 022778 7 RCSHCSICNNC 17 (292)
Q Consensus 7 Rs~HCs~C~~C 17 (292)
|-|||+.|++-
T Consensus 36 RrHHCR~CG~v 46 (84)
T 1z2q_A 36 RRHHCRNCGYV 46 (84)
T ss_dssp CCEECTTTCCE
T ss_pred hcccccCCCcE
Confidence 67899988764
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.30 E-value=19 Score=28.40 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.4
Q ss_pred CCCCCCcccCcc
Q 022778 6 PRCSHCSICNNC 17 (292)
Q Consensus 6 pRs~HCs~C~~C 17 (292)
.|-|||+.||.-
T Consensus 83 ~RrHHCR~CG~v 94 (125)
T 1joc_A 83 VRRHHCRQCGNI 94 (125)
T ss_dssp SCCEECTTTCCE
T ss_pred cccccCCCCCeE
Confidence 377899999874
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.98 E-value=1.4e+02 Score=21.64 Aligned_cols=24 Identities=8% Similarity=0.297 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhccchhhhh
Q 022778 95 WFVGGLTVFHSYLISRNQSTYENF 118 (292)
Q Consensus 95 ~fv~~L~~fhlyLI~~N~TT~E~~ 118 (292)
+.+..|+++-+.......--++.+
T Consensus 24 iGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555444433
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=18.78 E-value=28 Score=25.80 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=7.9
Q ss_pred CCCCCcccCcc
Q 022778 7 RCSHCSICNNC 17 (292)
Q Consensus 7 Rs~HCs~C~~C 17 (292)
|-|||+.|+.-
T Consensus 35 RrhhCr~CG~v 45 (90)
T 3t7l_A 35 RRHHCRACGKV 45 (90)
T ss_dssp CCEECTTTCCE
T ss_pred hCccccCCCCE
Confidence 66888887763
No 8
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=18.23 E-value=1.3e+02 Score=20.16 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 022778 34 LRNYRFFFMFVFSTTLLCIYVHAF 57 (292)
Q Consensus 34 ~rNyr~F~lFL~~~tl~~i~~~~~ 57 (292)
++.|+-|+-|.-+.++.++.++++
T Consensus 22 e~Ty~gFi~~~k~gt~~~~~~ll~ 45 (51)
T 1m56_D 22 EKTFAGFVRMVTWAAVVIVAALIF 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999988888776655544
No 9
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=17.71 E-value=26 Score=27.65 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.5
Q ss_pred CCCCCCcccCcc
Q 022778 6 PRCSHCSICNNC 17 (292)
Q Consensus 6 pRs~HCs~C~~C 17 (292)
.|-|||+.|++.
T Consensus 33 ~RkHHCR~CG~i 44 (120)
T 1y02_A 33 ARKQTCLDCKKN 44 (120)
T ss_dssp GGCEECTTTCCE
T ss_pred cccccCCCCCCe
Confidence 377999999874
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=17.51 E-value=25 Score=26.01 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=8.9
Q ss_pred CCCCCCcccCcc
Q 022778 6 PRCSHCSICNNC 17 (292)
Q Consensus 6 pRs~HCs~C~~C 17 (292)
-|-|||+.|++-
T Consensus 23 ~RrHHCR~CG~v 34 (88)
T 1wfk_A 23 KKEYGCKNCGRA 34 (88)
T ss_dssp SCEEECSSSCCE
T ss_pred cccccCCCCCCE
Confidence 367888888763
Done!