Query 022783
Match_columns 292
No_of_seqs 234 out of 579
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03098 LPA1 LOW PSII ACCUMUL 99.3 6E-12 1.3E-16 125.0 9.7 75 216-290 76-150 (453)
2 PF13414 TPR_11: TPR repeat; P 99.2 6.1E-11 1.3E-15 86.3 7.0 65 215-282 3-68 (69)
3 KOG0553 TPR repeat-containing 99.1 3.7E-10 8E-15 107.2 8.3 70 212-284 78-147 (304)
4 PF13432 TPR_16: Tetratricopep 98.9 5.9E-09 1.3E-13 75.2 8.3 64 219-285 1-64 (65)
5 PRK15359 type III secretion sy 98.9 4.1E-09 8.8E-14 88.8 8.4 95 185-287 32-127 (144)
6 KOG4234 TPR repeat-containing 98.8 1.2E-08 2.6E-13 93.6 8.4 70 215-284 95-166 (271)
7 PRK11189 lipoprotein NlpI; Pro 98.8 2E-08 4.3E-13 93.7 9.8 106 178-286 58-166 (296)
8 PF13424 TPR_12: Tetratricopep 98.8 2.5E-08 5.3E-13 74.3 7.0 65 217-281 7-75 (78)
9 KOG0548 Molecular co-chaperone 98.7 4.3E-08 9.4E-13 98.9 10.1 91 191-284 331-424 (539)
10 PF13371 TPR_9: Tetratricopept 98.7 6E-08 1.3E-12 71.0 7.1 62 222-286 2-63 (73)
11 KOG0550 Molecular chaperone (D 98.7 5.2E-08 1.1E-12 96.4 7.9 93 187-283 213-318 (486)
12 PF00595 PDZ: PDZ domain (Also 98.6 1.1E-07 2.4E-12 72.1 6.9 74 88-166 1-81 (81)
13 PRK15359 type III secretion sy 98.6 3.1E-07 6.7E-12 77.4 9.5 83 200-287 11-93 (144)
14 KOG4626 O-linked N-acetylgluco 98.6 2.4E-08 5.1E-13 102.9 3.2 108 174-284 196-318 (966)
15 TIGR02795 tol_pal_ybgF tol-pal 98.6 3.2E-07 6.9E-12 71.1 8.5 69 217-285 41-109 (119)
16 KOG0547 Translocase of outer m 98.6 1.3E-07 2.7E-12 95.4 7.4 66 217-285 117-182 (606)
17 PRK02603 photosystem I assembl 98.5 5.5E-07 1.2E-11 77.1 10.0 68 217-284 37-104 (172)
18 TIGR00990 3a0801s09 mitochondr 98.5 5.4E-07 1.2E-11 91.5 10.7 95 185-282 128-224 (615)
19 PLN03088 SGT1, suppressor of 98.5 8E-07 1.7E-11 85.6 11.3 95 184-286 9-104 (356)
20 TIGR02552 LcrH_SycD type III s 98.5 7.2E-07 1.6E-11 71.8 8.9 69 216-287 52-120 (135)
21 KOG4626 O-linked N-acetylgluco 98.5 3.9E-07 8.5E-12 94.1 7.7 105 176-283 334-453 (966)
22 PRK15363 pathogenicity island 98.4 1.5E-06 3.3E-11 76.1 9.8 76 204-282 57-133 (157)
23 CHL00033 ycf3 photosystem I as 98.4 1.5E-06 3.3E-11 73.9 9.6 69 215-283 35-103 (168)
24 TIGR02552 LcrH_SycD type III s 98.4 1.4E-06 3.1E-11 70.0 8.9 79 206-287 7-86 (135)
25 cd00189 TPR Tetratricopeptide 98.4 1.5E-06 3.2E-11 60.8 7.8 64 217-283 36-99 (100)
26 PF14559 TPR_19: Tetratricopep 98.4 3.2E-07 6.9E-12 66.2 4.2 57 225-284 1-57 (68)
27 PLN03088 SGT1, suppressor of 98.4 1.3E-06 2.8E-11 84.2 9.5 67 217-286 4-70 (356)
28 PRK02603 photosystem I assembl 98.4 3.4E-06 7.4E-11 72.2 10.6 102 184-288 35-156 (172)
29 PF12895 Apc3: Anaphase-promot 98.4 1.7E-06 3.7E-11 65.7 7.3 58 217-278 27-84 (84)
30 cd00189 TPR Tetratricopeptide 98.4 2.6E-06 5.7E-11 59.5 7.7 66 218-286 3-68 (100)
31 TIGR00990 3a0801s09 mitochondr 98.3 2.7E-06 5.8E-11 86.4 10.6 66 217-286 129-194 (615)
32 PRK15363 pathogenicity island 98.3 2.7E-06 5.8E-11 74.6 9.0 68 217-287 37-104 (157)
33 KOG0551 Hsp90 co-chaperone CNS 98.3 1.3E-06 2.8E-11 84.8 7.6 74 215-288 81-155 (390)
34 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.7E-06 1.2E-10 64.0 8.9 68 217-284 4-71 (119)
35 PRK10370 formate-dependent nit 98.3 3.5E-06 7.6E-11 74.9 8.6 98 187-287 76-179 (198)
36 KOG1125 TPR repeat-containing 98.3 1.1E-06 2.3E-11 89.6 5.7 93 189-284 435-530 (579)
37 KOG4648 Uncharacterized conser 98.3 1.4E-06 3E-11 85.4 6.1 62 218-282 100-161 (536)
38 KOG0553 TPR repeat-containing 98.3 2.8E-06 6E-11 81.1 7.9 95 187-284 84-181 (304)
39 PRK11189 lipoprotein NlpI; Pro 98.2 7.2E-06 1.6E-10 76.6 10.1 67 216-285 65-131 (296)
40 PRK09782 bacteriophage N4 rece 98.2 5.6E-06 1.2E-10 89.9 8.8 95 187-284 612-709 (987)
41 PRK12370 invasion protein regu 98.1 1.3E-05 2.8E-10 81.1 10.2 80 204-286 326-406 (553)
42 KOG4555 TPR repeat-containing 98.1 6E-06 1.3E-10 71.8 6.5 62 220-284 48-109 (175)
43 CHL00033 ycf3 photosystem I as 98.1 1.7E-05 3.8E-10 67.3 8.3 94 184-280 35-141 (168)
44 TIGR02521 type_IV_pilW type IV 98.1 2.4E-05 5.1E-10 65.3 8.8 64 220-284 104-167 (234)
45 TIGR02521 type_IV_pilW type IV 98.0 3.1E-05 6.8E-10 64.5 9.2 64 217-283 137-200 (234)
46 TIGR03302 OM_YfiO outer membra 98.0 2.8E-05 6E-10 68.6 9.2 70 216-285 34-103 (235)
47 cd00992 PDZ_signaling PDZ doma 98.0 2.9E-05 6.2E-10 57.9 7.9 67 92-165 11-81 (82)
48 cd00136 PDZ PDZ domain, also c 98.0 2.4E-05 5.2E-10 57.0 7.0 66 93-165 1-69 (70)
49 KOG0548 Molecular co-chaperone 98.0 9.9E-06 2.1E-10 82.2 6.3 66 216-284 3-68 (539)
50 TIGR03302 OM_YfiO outer membra 98.0 2.6E-05 5.7E-10 68.7 8.3 69 217-285 72-148 (235)
51 PRK15179 Vi polysaccharide bio 98.0 2E-05 4.2E-10 82.9 8.7 75 204-281 108-183 (694)
52 PRK15179 Vi polysaccharide bio 98.0 2.1E-05 4.5E-10 82.7 8.9 94 186-282 122-218 (694)
53 KOG0543 FKBP-type peptidyl-pro 97.9 0.00011 2.3E-09 72.7 12.0 67 219-289 261-327 (397)
54 PRK10370 formate-dependent nit 97.9 8.9E-05 1.9E-09 66.0 10.3 80 204-286 61-144 (198)
55 PLN02789 farnesyltranstransfer 97.9 6.2E-05 1.3E-09 72.2 9.6 101 184-287 71-177 (320)
56 PRK12370 invasion protein regu 97.9 6E-05 1.3E-09 76.3 9.7 90 190-282 344-436 (553)
57 PRK09782 bacteriophage N4 rece 97.9 0.0001 2.2E-09 80.3 11.4 80 204-286 598-677 (987)
58 COG3063 PilF Tfp pilus assembl 97.9 4.1E-05 8.9E-10 71.3 7.2 94 191-285 76-172 (250)
59 PRK10803 tol-pal system protei 97.8 0.00016 3.4E-09 67.7 11.2 68 217-284 182-249 (263)
60 PF12895 Apc3: Anaphase-promot 97.8 1E-05 2.2E-10 61.5 2.6 55 227-283 1-55 (84)
61 smart00228 PDZ Domain present 97.8 0.00013 2.9E-09 54.1 8.3 74 88-168 4-84 (85)
62 KOG1125 TPR repeat-containing 97.8 6.9E-05 1.5E-09 76.7 8.7 86 195-283 408-495 (579)
63 PF13180 PDZ_2: PDZ domain; PD 97.8 7.7E-05 1.7E-09 56.9 6.9 68 95-169 3-73 (82)
64 PF13431 TPR_17: Tetratricopep 97.8 1.7E-05 3.6E-10 52.2 2.6 34 237-273 1-34 (34)
65 KOG1173 Anaphase-promoting com 97.8 8.4E-05 1.8E-09 76.2 8.5 64 219-285 459-522 (611)
66 PF00515 TPR_1: Tetratricopept 97.8 5E-05 1.1E-09 48.4 4.5 31 253-283 2-32 (34)
67 KOG0543 FKBP-type peptidyl-pro 97.7 9E-05 2E-09 73.3 7.8 69 220-288 213-293 (397)
68 KOG1155 Anaphase-promoting com 97.7 0.00015 3.2E-09 73.3 9.4 64 220-283 369-463 (559)
69 PRK15174 Vi polysaccharide exp 97.7 0.0001 2.2E-09 76.4 8.5 79 204-285 272-351 (656)
70 PRK10866 outer membrane biogen 97.7 0.00018 3.9E-09 66.2 9.3 69 216-284 33-101 (243)
71 KOG4340 Uncharacterized conser 97.7 3.1E-05 6.8E-10 75.0 4.2 70 216-288 145-214 (459)
72 KOG3571 Dishevelled 3 and rela 97.7 0.00012 2.7E-09 74.2 8.6 89 81-171 245-342 (626)
73 KOG4642 Chaperone-dependent E3 97.7 3.9E-05 8.5E-10 72.0 4.4 61 219-282 14-74 (284)
74 TIGR02917 PEP_TPR_lipo putativ 97.7 0.0002 4.3E-09 71.5 9.0 64 218-284 25-88 (899)
75 PF09976 TPR_21: Tetratricopep 97.6 0.00015 3.3E-09 60.5 6.9 64 218-281 51-114 (145)
76 PF13429 TPR_15: Tetratricopep 97.6 0.0002 4.2E-09 65.4 8.2 72 218-289 149-251 (280)
77 PF13525 YfiO: Outer membrane 97.6 0.00029 6.4E-09 62.4 8.9 68 215-282 5-72 (203)
78 PF12688 TPR_5: Tetratrico pep 97.6 0.00039 8.5E-09 58.1 9.1 97 187-283 4-106 (120)
79 KOG0624 dsRNA-activated protei 97.6 0.00017 3.6E-09 71.1 7.6 102 177-282 221-371 (504)
80 PRK15174 Vi polysaccharide exp 97.6 0.00023 4.9E-09 73.9 8.8 98 186-286 286-386 (656)
81 PF00515 TPR_1: Tetratricopept 97.6 9.1E-05 2E-09 47.2 3.7 31 217-247 3-33 (34)
82 PRK11447 cellulose synthase su 97.6 0.00024 5.2E-09 77.8 9.3 66 219-287 355-420 (1157)
83 PRK11788 tetratricopeptide rep 97.6 0.00052 1.1E-08 64.3 10.2 64 219-285 184-247 (389)
84 PF13512 TPR_18: Tetratricopep 97.6 0.00058 1.3E-08 59.1 9.6 103 177-281 7-128 (142)
85 TIGR02917 PEP_TPR_lipo putativ 97.6 0.0003 6.5E-09 70.3 8.9 67 216-285 737-803 (899)
86 KOG1126 DNA-binding cell divis 97.6 0.00023 5E-09 73.8 8.2 95 184-281 489-586 (638)
87 PF12688 TPR_5: Tetratrico pep 97.5 0.00063 1.4E-08 56.9 8.9 66 218-283 4-69 (120)
88 KOG1126 DNA-binding cell divis 97.5 0.00022 4.7E-09 74.0 7.2 62 220-284 494-555 (638)
89 KOG4234 TPR repeat-containing 97.5 0.0005 1.1E-08 63.7 8.7 96 187-286 105-202 (271)
90 PRK11788 tetratricopeptide rep 97.5 0.00045 9.7E-09 64.7 8.4 59 220-282 254-312 (389)
91 PF07719 TPR_2: Tetratricopept 97.5 0.00019 4.1E-09 45.1 4.1 29 254-282 3-31 (34)
92 cd00990 PDZ_glycyl_aminopeptid 97.5 0.0004 8.6E-09 51.9 6.4 65 95-168 3-67 (80)
93 PLN02789 farnesyltranstransfer 97.4 0.00069 1.5E-08 65.1 9.4 110 170-287 28-143 (320)
94 PF07719 TPR_2: Tetratricopept 97.4 0.00034 7.4E-09 44.0 5.0 32 216-247 2-33 (34)
95 PRK10803 tol-pal system protei 97.4 0.00081 1.7E-08 63.0 9.2 67 216-282 143-210 (263)
96 KOG2376 Signal recognition par 97.4 0.0004 8.8E-09 71.6 7.3 66 220-285 115-208 (652)
97 PRK11447 cellulose synthase su 97.4 0.001 2.2E-08 73.1 10.8 65 218-285 606-670 (1157)
98 PF13414 TPR_11: TPR repeat; P 97.4 0.00025 5.5E-09 51.2 4.1 60 187-246 6-69 (69)
99 COG3063 PilF Tfp pilus assembl 97.4 0.0011 2.5E-08 61.9 9.3 102 177-281 30-132 (250)
100 cd00988 PDZ_CTP_protease PDZ d 97.3 0.0013 2.7E-08 49.7 7.6 66 95-168 4-72 (85)
101 PRK10049 pgaA outer membrane p 97.3 0.00095 2.1E-08 70.3 9.3 94 185-287 57-151 (765)
102 PRK10866 outer membrane biogen 97.3 0.0022 4.7E-08 59.1 10.5 103 177-281 29-153 (243)
103 cd05804 StaR_like StaR_like; a 97.3 0.0011 2.3E-08 61.5 8.5 80 204-283 136-217 (355)
104 cd05804 StaR_like StaR_like; a 97.3 0.001 2.2E-08 61.6 8.2 62 219-283 118-179 (355)
105 KOG1128 Uncharacterized conser 97.2 0.00088 1.9E-08 70.5 8.0 67 216-285 520-586 (777)
106 KOG0550 Molecular chaperone (D 97.2 0.00024 5.2E-09 70.9 3.2 71 209-282 43-113 (486)
107 PRK15331 chaperone protein Sic 97.1 0.0018 3.8E-08 57.5 7.8 95 186-290 46-141 (165)
108 PF09976 TPR_21: Tetratricopep 97.1 0.0044 9.5E-08 51.7 9.7 90 185-279 56-145 (145)
109 KOG1840 Kinesin light chain [C 97.1 0.0032 7E-08 64.4 10.2 65 217-281 242-312 (508)
110 cd00987 PDZ_serine_protease PD 97.1 0.0014 3.1E-08 49.5 5.9 58 104-168 23-82 (90)
111 PF06552 TOM20_plant: Plant sp 97.0 0.002 4.4E-08 58.1 7.3 64 218-284 28-112 (186)
112 PF13512 TPR_18: Tetratricopep 97.0 0.0052 1.1E-07 53.2 9.4 70 215-284 10-79 (142)
113 KOG0376 Serine-threonine phosp 97.0 0.00055 1.2E-08 69.1 3.5 63 218-283 7-69 (476)
114 PRK10049 pgaA outer membrane p 97.0 0.0039 8.4E-08 65.8 9.8 66 218-286 396-461 (765)
115 PRK10153 DNA-binding transcrip 97.0 0.0028 6.1E-08 64.7 8.5 62 220-285 425-486 (517)
116 KOG1308 Hsp70-interacting prot 97.0 0.00025 5.5E-09 69.3 0.9 60 222-284 121-180 (377)
117 KOG0547 Translocase of outer m 97.0 0.0021 4.5E-08 65.6 7.2 99 185-286 116-218 (606)
118 PRK15331 chaperone protein Sic 96.9 0.0035 7.6E-08 55.6 7.4 67 218-287 40-106 (165)
119 KOG1155 Anaphase-promoting com 96.9 0.0041 9E-08 63.1 8.8 95 183-280 397-494 (559)
120 cd00991 PDZ_archaeal_metallopr 96.9 0.0038 8.3E-08 47.4 6.5 58 104-168 9-68 (79)
121 KOG1130 Predicted G-alpha GTPa 96.9 0.0004 8.7E-09 69.8 1.3 61 220-280 200-263 (639)
122 PF13428 TPR_14: Tetratricopep 96.9 0.0023 5E-08 43.5 4.7 40 218-260 4-43 (44)
123 KOG2076 RNA polymerase III tra 96.8 0.0036 7.8E-08 67.1 8.1 67 219-287 418-484 (895)
124 KOG0624 dsRNA-activated protei 96.8 0.0028 6.1E-08 62.7 6.8 65 217-284 40-104 (504)
125 COG5010 TadD Flp pilus assembl 96.8 0.0062 1.3E-07 57.4 8.8 94 183-284 106-200 (257)
126 PF13525 YfiO: Outer membrane 96.8 0.0077 1.7E-07 53.4 8.8 96 185-282 13-120 (203)
127 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0047 1E-07 58.0 7.6 106 176-284 57-165 (297)
128 PF13181 TPR_8: Tetratricopept 96.8 0.0026 5.6E-08 40.1 4.2 30 254-283 3-32 (34)
129 KOG0545 Aryl-hydrocarbon recep 96.7 0.0057 1.2E-07 58.2 7.9 66 220-285 183-263 (329)
130 cd00989 PDZ_metalloprotease PD 96.7 0.0055 1.2E-07 45.4 6.2 56 106-168 13-69 (79)
131 KOG1840 Kinesin light chain [C 96.7 0.0074 1.6E-07 61.8 9.2 96 187-282 286-397 (508)
132 PF14938 SNAP: Soluble NSF att 96.6 0.01 2.2E-07 55.1 8.9 63 219-281 118-184 (282)
133 COG5010 TadD Flp pilus assembl 96.6 0.0082 1.8E-07 56.6 8.2 62 220-284 105-166 (257)
134 PF13181 TPR_8: Tetratricopept 96.6 0.0025 5.5E-08 40.2 3.3 31 217-247 3-33 (34)
135 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.012 2.7E-07 58.3 9.7 57 220-279 239-295 (395)
136 PF13176 TPR_7: Tetratricopept 96.6 0.0041 8.8E-08 40.8 4.3 29 254-282 1-29 (36)
137 PF13432 TPR_16: Tetratricopep 96.5 0.0031 6.7E-08 45.1 3.4 58 186-248 6-64 (65)
138 PRK10747 putative protoheme IX 96.4 0.03 6.4E-07 54.5 11.0 60 218-281 331-390 (398)
139 PF12862 Apc5: Anaphase-promot 96.3 0.014 3E-07 46.0 6.7 60 225-284 8-73 (94)
140 PRK11906 transcriptional regul 96.3 0.016 3.6E-07 58.6 8.5 63 219-284 342-404 (458)
141 KOG1173 Anaphase-promoting com 96.3 0.01 2.2E-07 61.3 7.1 71 219-289 418-492 (611)
142 PF13424 TPR_12: Tetratricopep 96.3 0.0068 1.5E-07 44.8 4.4 34 250-284 3-36 (78)
143 KOG4162 Predicted calmodulin-b 96.3 0.013 2.7E-07 62.3 7.8 68 217-284 686-786 (799)
144 PF12569 NARP1: NMDA receptor- 96.3 0.017 3.6E-07 59.3 8.6 64 219-285 198-261 (517)
145 PRK14720 transcript cleavage f 96.2 0.027 5.8E-07 61.3 10.2 63 216-282 117-179 (906)
146 smart00028 TPR Tetratricopepti 96.2 0.0093 2E-07 34.2 3.7 30 218-247 4-33 (34)
147 smart00028 TPR Tetratricopepti 96.2 0.01 2.2E-07 34.0 3.8 31 253-283 2-32 (34)
148 TIGR00225 prc C-terminal pepti 96.1 0.016 3.5E-07 55.4 7.2 66 95-168 53-121 (334)
149 PF13176 TPR_7: Tetratricopept 96.1 0.0033 7.2E-08 41.2 1.7 29 218-246 2-30 (36)
150 PF10579 Rapsyn_N: Rapsyn N-te 96.1 0.033 7.1E-07 44.1 7.6 66 216-281 7-72 (80)
151 PF14938 SNAP: Soluble NSF att 96.1 0.043 9.3E-07 51.0 9.7 65 217-281 76-144 (282)
152 KOG3785 Uncharacterized conser 96.1 0.0074 1.6E-07 60.0 4.7 55 220-278 62-117 (557)
153 PRK11186 carboxy-terminal prot 96.1 0.015 3.3E-07 61.3 7.3 72 95-168 246-320 (667)
154 KOG1128 Uncharacterized conser 96.0 0.014 3.1E-07 61.7 6.8 80 204-286 472-553 (777)
155 PF13429 TPR_15: Tetratricopep 96.0 0.0075 1.6E-07 55.0 4.3 60 219-281 218-277 (280)
156 cd00986 PDZ_LON_protease PDZ d 95.9 0.03 6.6E-07 42.0 6.4 55 106-168 9-65 (79)
157 KOG1129 TPR repeat-containing 95.9 0.012 2.6E-07 58.0 5.1 90 193-282 335-425 (478)
158 PF13374 TPR_10: Tetratricopep 95.8 0.02 4.4E-07 36.9 4.6 29 253-281 3-31 (42)
159 COG4105 ComL DNA uptake lipopr 95.8 0.053 1.2E-06 51.2 9.0 70 214-283 33-102 (254)
160 KOG4642 Chaperone-dependent E3 95.8 0.035 7.7E-07 52.6 7.6 96 184-283 13-109 (284)
161 TIGR00540 hemY_coli hemY prote 95.8 0.072 1.6E-06 51.9 10.0 58 220-281 340-399 (409)
162 PF04733 Coatomer_E: Coatomer 95.7 0.047 1E-06 51.8 8.4 55 220-277 206-261 (290)
163 KOG2002 TPR-containing nuclear 95.7 0.013 2.8E-07 63.6 4.9 78 203-283 633-711 (1018)
164 PRK14574 hmsH outer membrane p 95.7 0.069 1.5E-06 57.6 10.4 62 220-284 107-168 (822)
165 KOG2076 RNA polymerase III tra 95.6 0.087 1.9E-06 56.9 10.8 100 188-290 177-280 (895)
166 COG0793 Prc Periplasmic protea 95.6 0.035 7.5E-07 55.3 7.4 82 85-171 89-174 (406)
167 KOG2003 TPR repeat-containing 95.6 0.01 2.2E-07 60.6 3.7 57 219-278 494-550 (840)
168 PF13428 TPR_14: Tetratricopep 95.6 0.032 6.9E-07 37.8 4.9 34 254-287 3-36 (44)
169 KOG0609 Calcium/calmodulin-dep 95.5 0.023 5E-07 58.3 5.7 75 92-170 133-207 (542)
170 COG1729 Uncharacterized protei 95.5 0.06 1.3E-06 51.0 8.0 65 217-281 180-244 (262)
171 TIGR02037 degP_htrA_DO peripla 95.5 0.039 8.5E-07 54.5 7.1 67 95-168 236-315 (428)
172 COG1729 Uncharacterized protei 95.4 0.066 1.4E-06 50.7 8.2 69 216-285 142-210 (262)
173 PF03704 BTAD: Bacterial trans 95.4 0.16 3.5E-06 41.8 9.6 57 220-279 67-123 (146)
174 TIGR02037 degP_htrA_DO peripla 95.4 0.038 8.2E-07 54.6 6.8 58 105-169 362-421 (428)
175 KOG4814 Uncharacterized conser 95.4 0.03 6.4E-07 59.0 6.1 66 219-284 358-426 (872)
176 PLN00049 carboxyl-terminal pro 95.4 0.051 1.1E-06 53.4 7.5 69 95-168 87-161 (389)
177 PF13174 TPR_6: Tetratricopept 95.3 0.029 6.2E-07 34.6 3.7 28 254-281 2-29 (33)
178 PF13174 TPR_6: Tetratricopept 95.3 0.02 4.4E-07 35.4 2.9 31 217-247 2-32 (33)
179 PF10300 DUF3808: Protein of u 95.3 0.14 3E-06 51.7 10.3 94 185-280 275-375 (468)
180 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.072 1.6E-06 38.7 6.1 34 218-251 4-37 (53)
181 COG4783 Putative Zn-dependent 95.2 0.087 1.9E-06 53.7 8.7 63 220-285 345-407 (484)
182 KOG2003 TPR repeat-containing 95.2 0.018 3.8E-07 58.9 3.8 91 188-282 241-339 (840)
183 COG2956 Predicted N-acetylgluc 95.2 0.1 2.2E-06 51.3 8.7 62 219-282 218-279 (389)
184 KOG3550 Receptor targeting pro 95.2 0.04 8.6E-07 49.0 5.4 76 87-166 92-172 (207)
185 PRK14574 hmsH outer membrane p 95.2 0.073 1.6E-06 57.5 8.4 63 220-285 73-135 (822)
186 KOG4555 TPR repeat-containing 95.1 0.12 2.6E-06 45.4 8.1 90 189-283 55-146 (175)
187 PF13371 TPR_9: Tetratricopept 95.1 0.055 1.2E-06 39.2 5.2 46 204-249 17-63 (73)
188 KOG2002 TPR-containing nuclear 95.0 0.14 3E-06 56.0 9.8 72 216-289 308-379 (1018)
189 PRK10139 serine endoprotease; 94.9 0.048 1.1E-06 54.9 6.0 58 105-169 390-447 (455)
190 KOG1130 Predicted G-alpha GTPa 94.9 0.058 1.3E-06 54.7 6.3 98 185-282 236-345 (639)
191 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.067 1.5E-06 54.2 6.3 62 184-245 75-142 (453)
192 PF14559 TPR_19: Tetratricopep 94.7 0.091 2E-06 37.4 5.4 45 204-248 13-58 (68)
193 TIGR02038 protease_degS peripl 94.7 0.078 1.7E-06 51.4 6.5 57 105-168 278-336 (351)
194 PRK10898 serine endoprotease; 94.6 0.11 2.4E-06 50.6 7.4 57 105-168 279-337 (353)
195 KOG0376 Serine-threonine phosp 94.5 0.035 7.6E-07 56.4 3.9 88 199-289 21-109 (476)
196 COG0457 NrfG FOG: TPR repeat [ 94.5 0.53 1.1E-05 36.4 9.7 58 224-281 139-196 (291)
197 PF12968 DUF3856: Domain of Un 94.4 0.94 2E-05 39.2 11.6 86 195-280 22-128 (144)
198 PRK10942 serine endoprotease; 94.4 0.076 1.6E-06 53.7 6.0 60 105-171 408-467 (473)
199 PRK10139 serine endoprotease; 94.4 0.095 2.1E-06 52.8 6.6 58 104-168 289-348 (455)
200 KOG0545 Aryl-hydrocarbon recep 94.4 0.33 7.2E-06 46.5 9.7 140 142-284 127-296 (329)
201 COG4783 Putative Zn-dependent 94.3 0.15 3.2E-06 52.1 7.7 73 204-279 362-452 (484)
202 KOG1127 TPR repeat-containing 94.3 0.14 3E-06 56.3 7.9 76 203-281 23-103 (1238)
203 KOG3209 WW domain-containing p 94.3 0.16 3.5E-06 54.1 8.2 88 79-170 892-984 (984)
204 PRK10747 putative protoheme IX 94.3 0.3 6.4E-06 47.6 9.7 61 220-283 158-218 (398)
205 KOG1892 Actin filament-binding 94.2 0.069 1.5E-06 58.5 5.4 51 85-135 933-990 (1629)
206 KOG3532 Predicted protein kina 94.2 0.087 1.9E-06 55.9 6.0 74 91-171 384-457 (1051)
207 PRK10942 serine endoprotease; 94.1 0.15 3.3E-06 51.5 7.3 58 104-168 310-369 (473)
208 PF10602 RPN7: 26S proteasome 93.9 0.52 1.1E-05 41.6 9.6 64 215-278 36-99 (177)
209 KOG3060 Uncharacterized conser 93.9 0.21 4.6E-06 47.7 7.3 65 220-284 91-186 (289)
210 PRK10779 zinc metallopeptidase 93.8 0.19 4.2E-06 50.2 7.5 58 106-170 222-280 (449)
211 KOG1174 Anaphase-promoting com 93.8 0.35 7.5E-06 49.2 9.1 67 220-290 443-509 (564)
212 PF09295 ChAPs: ChAPs (Chs5p-A 93.7 0.43 9.3E-06 47.6 9.6 69 217-288 202-270 (395)
213 KOG3081 Vesicle coat complex C 93.7 0.98 2.1E-05 43.5 11.5 108 176-289 122-244 (299)
214 TIGR00540 hemY_coli hemY prote 93.7 0.43 9.3E-06 46.5 9.5 61 221-284 159-219 (409)
215 KOG3553 Tax interaction protei 93.6 0.064 1.4E-06 44.7 3.0 32 103-135 57-88 (124)
216 PRK14720 transcript cleavage f 93.6 0.33 7.2E-06 53.1 9.2 70 218-289 68-153 (906)
217 COG0457 NrfG FOG: TPR repeat [ 93.6 0.97 2.1E-05 34.9 9.5 65 218-284 170-234 (291)
218 PF14853 Fis1_TPR_C: Fis1 C-te 93.5 0.19 4.2E-06 36.5 5.1 34 254-287 3-36 (53)
219 KOG4648 Uncharacterized conser 93.5 0.17 3.8E-06 50.4 6.3 78 204-284 119-197 (536)
220 KOG3580 Tight junction protein 93.4 0.068 1.5E-06 56.1 3.5 43 93-136 417-459 (1027)
221 TIGR01713 typeII_sec_gspC gene 93.2 0.29 6.2E-06 46.0 7.0 67 95-168 179-249 (259)
222 KOG1308 Hsp70-interacting prot 93.1 0.042 9.1E-07 54.1 1.4 78 204-284 136-214 (377)
223 KOG1156 N-terminal acetyltrans 93.1 0.21 4.5E-06 52.7 6.4 49 220-271 80-128 (700)
224 COG3975 Predicted protease wit 93.0 0.15 3.2E-06 52.7 5.2 40 95-136 453-492 (558)
225 TIGR00054 RIP metalloprotease 92.9 0.2 4.4E-06 49.7 5.9 59 105-170 203-262 (420)
226 PF06552 TOM20_plant: Plant sp 92.9 0.27 5.9E-06 44.6 6.1 71 188-263 41-123 (186)
227 KOG1156 N-terminal acetyltrans 92.9 0.59 1.3E-05 49.4 9.3 68 219-289 45-112 (700)
228 PRK10941 hypothetical protein; 92.8 0.54 1.2E-05 44.5 8.3 64 220-286 186-249 (269)
229 KOG3060 Uncharacterized conser 92.8 0.93 2E-05 43.4 9.7 68 217-287 156-226 (289)
230 PF04733 Coatomer_E: Coatomer 92.7 0.34 7.3E-06 46.0 6.9 67 220-289 168-238 (290)
231 COG4235 Cytochrome c biogenesi 92.5 0.7 1.5E-05 44.5 8.7 70 216-285 157-260 (287)
232 COG2956 Predicted N-acetylgluc 92.5 1.2 2.6E-05 44.1 10.4 72 176-247 99-173 (389)
233 PF12569 NARP1: NMDA receptor- 92.5 0.74 1.6E-05 47.4 9.4 78 178-262 3-82 (517)
234 PF10300 DUF3808: Protein of u 92.4 0.37 8E-06 48.6 7.1 66 216-281 268-334 (468)
235 PLN03218 maturation of RBCL 1; 92.4 1.2 2.6E-05 49.6 11.4 61 220-284 724-786 (1060)
236 PF13374 TPR_10: Tetratricopep 92.2 0.21 4.7E-06 32.0 3.5 28 218-245 5-32 (42)
237 PLN03218 maturation of RBCL 1; 92.0 1.3 2.9E-05 49.3 11.3 61 220-284 689-751 (1060)
238 PRK04841 transcriptional regul 92.0 1.2 2.5E-05 47.1 10.5 63 219-281 535-602 (903)
239 KOG0551 Hsp90 co-chaperone CNS 91.8 0.84 1.8E-05 45.2 8.4 94 186-282 83-183 (390)
240 COG4785 NlpI Lipoprotein NlpI, 91.6 0.5 1.1E-05 44.7 6.4 64 218-284 68-131 (297)
241 COG4976 Predicted methyltransf 91.6 0.31 6.7E-06 46.2 5.0 60 224-286 4-63 (287)
242 PF12968 DUF3856: Domain of Un 91.4 1.5 3.3E-05 37.9 8.6 66 216-281 10-84 (144)
243 KOG2796 Uncharacterized conser 91.3 0.39 8.6E-06 46.5 5.5 62 220-284 257-318 (366)
244 KOG3364 Membrane protein invol 90.8 1.6 3.6E-05 38.2 8.3 69 215-285 32-104 (149)
245 PF13431 TPR_17: Tetratricopep 90.5 0.25 5.5E-06 32.2 2.5 32 205-236 2-34 (34)
246 KOG3785 Uncharacterized conser 90.4 0.78 1.7E-05 46.1 6.8 61 216-279 152-212 (557)
247 TIGR00054 RIP metalloprotease 90.4 0.37 8E-06 47.9 4.6 56 105-167 128-183 (420)
248 KOG1129 TPR repeat-containing 90.3 1.2 2.7E-05 44.4 8.0 79 208-289 249-327 (478)
249 PLN03081 pentatricopeptide (PP 90.2 1.3 2.9E-05 46.0 8.7 61 220-284 295-357 (697)
250 KOG1941 Acetylcholine receptor 90.1 0.32 7E-06 48.8 3.9 31 252-282 206-236 (518)
251 PRK10779 zinc metallopeptidase 90.0 0.36 7.9E-06 48.3 4.2 56 106-168 127-184 (449)
252 PRK10153 DNA-binding transcrip 89.9 0.5 1.1E-05 48.5 5.3 68 204-273 442-509 (517)
253 COG0265 DegQ Trypsin-like seri 89.9 0.69 1.5E-05 44.3 5.9 58 106-171 271-330 (347)
254 KOG3606 Cell polarity protein 89.9 0.88 1.9E-05 44.0 6.4 71 91-165 169-250 (358)
255 PF11817 Foie-gras_1: Foie gra 89.7 2.5 5.5E-05 38.8 9.3 77 203-279 166-245 (247)
256 KOG3542 cAMP-regulated guanine 89.5 0.23 5E-06 52.9 2.4 48 87-135 537-591 (1283)
257 KOG3209 WW domain-containing p 89.4 3.2 6.9E-05 44.8 10.6 78 85-168 649-735 (984)
258 KOG2376 Signal recognition par 89.1 1.8 4E-05 45.5 8.6 70 216-285 176-257 (652)
259 PF04184 ST7: ST7 protein; In 89.0 1.4 2.9E-05 45.7 7.4 57 220-277 264-320 (539)
260 KOG0495 HAT repeat protein [RN 88.8 2.9 6.4E-05 44.8 9.8 91 189-289 596-687 (913)
261 PF09986 DUF2225: Uncharacteri 88.7 2.9 6.3E-05 38.2 8.7 59 226-284 136-197 (214)
262 PLN03081 pentatricopeptide (PP 88.3 1.5 3.2E-05 45.6 7.5 60 222-284 501-560 (697)
263 KOG1127 TPR repeat-containing 88.1 1.9 4.1E-05 47.9 8.1 65 218-285 5-70 (1238)
264 cd02682 MIT_AAA_Arch MIT: doma 88.0 0.85 1.8E-05 35.6 4.1 30 214-243 5-34 (75)
265 PRK04841 transcriptional regul 87.9 2 4.4E-05 45.4 8.2 62 220-281 457-520 (903)
266 KOG3605 Beta amyloid precursor 87.5 0.32 7E-06 51.5 2.0 56 80-135 640-703 (829)
267 COG3071 HemY Uncharacterized e 87.4 2.7 5.9E-05 42.2 8.2 58 219-280 332-389 (400)
268 PF14561 TPR_20: Tetratricopep 86.7 1.4 3.1E-05 34.8 4.9 29 219-247 26-54 (90)
269 KOG3580 Tight junction protein 86.6 1.2 2.6E-05 47.2 5.5 77 92-172 197-282 (1027)
270 cd02681 MIT_calpain7_1 MIT: do 86.5 1.4 2.9E-05 34.4 4.5 31 213-243 4-34 (76)
271 PF04212 MIT: MIT (microtubule 86.1 1.6 3.4E-05 32.4 4.6 28 216-243 6-33 (69)
272 KOG3129 26S proteasome regulat 86.0 1 2.2E-05 41.9 4.2 31 105-136 139-169 (231)
273 PLN03077 Protein ECB2; Provisi 86.0 4.7 0.0001 43.0 9.8 61 220-284 559-622 (857)
274 KOG1174 Anaphase-promoting com 85.8 1.9 4.2E-05 44.0 6.3 65 215-282 300-364 (564)
275 smart00745 MIT Microtubule Int 84.7 4.3 9.4E-05 30.5 6.5 28 216-243 9-36 (77)
276 COG2976 Uncharacterized protei 84.3 2.7 5.9E-05 38.7 6.1 60 219-282 130-189 (207)
277 COG2976 Uncharacterized protei 84.2 7.4 0.00016 35.9 8.8 68 217-284 91-158 (207)
278 KOG4162 Predicted calmodulin-b 84.2 4.9 0.00011 43.4 8.7 69 216-286 479-547 (799)
279 PF15015 NYD-SP12_N: Spermatog 84.1 2 4.3E-05 44.0 5.6 69 218-286 179-262 (569)
280 PLN03077 Protein ECB2; Provisi 83.8 3.4 7.4E-05 44.0 7.5 55 223-284 532-586 (857)
281 COG3118 Thioredoxin domain-con 83.3 4.8 0.0001 39.2 7.6 59 216-277 135-193 (304)
282 COG4105 ComL DNA uptake lipopr 82.8 4.9 0.00011 38.2 7.3 48 218-265 74-121 (254)
283 PF07721 TPR_4: Tetratricopept 82.7 1.9 4E-05 26.3 3.1 23 254-276 3-25 (26)
284 KOG4507 Uncharacterized conser 82.6 6.2 0.00014 42.1 8.6 125 139-284 583-708 (886)
285 COG4700 Uncharacterized protei 82.2 6.4 0.00014 36.7 7.6 60 219-281 93-153 (251)
286 TIGR02860 spore_IV_B stage IV 82.1 2.4 5.3E-05 42.6 5.3 67 93-169 96-171 (402)
287 KOG2471 TPR repeat-containing 82.1 1.4 3.1E-05 45.8 3.7 62 220-281 288-364 (696)
288 TIGR03504 FimV_Cterm FimV C-te 81.9 2.5 5.5E-05 29.6 3.9 28 255-282 2-29 (44)
289 KOG3938 RGS-GAIP interacting p 81.6 2.3 4.9E-05 41.1 4.6 76 89-168 133-210 (334)
290 PF03704 BTAD: Bacterial trans 81.5 17 0.00036 29.7 9.3 66 219-284 10-94 (146)
291 TIGR03279 cyano_FeS_chp putati 81.3 1.8 3.9E-05 43.9 4.1 25 109-134 2-26 (433)
292 cd02683 MIT_1 MIT: domain cont 81.2 2.6 5.7E-05 32.6 4.1 28 216-243 7-34 (77)
293 KOG0276 Vesicle coat complex C 81.0 3.6 7.8E-05 43.7 6.2 152 118-282 522-696 (794)
294 COG2912 Uncharacterized conser 80.6 16 0.00034 35.1 9.9 63 220-285 186-248 (269)
295 PF08631 SPO22: Meiosis protei 79.4 5.7 0.00012 37.0 6.5 56 226-281 4-65 (278)
296 KOG1310 WD40 repeat protein [G 78.6 14 0.0003 39.2 9.4 135 142-286 341-479 (758)
297 PF14685 Tricorn_PDZ: Tricorn 78.4 10 0.00023 30.3 6.8 69 95-170 3-81 (88)
298 KOG2053 Mitochondrial inherita 78.4 11 0.00024 41.4 9.0 62 219-283 47-108 (932)
299 PF03745 DUF309: Domain of unk 78.3 18 0.0004 26.9 7.7 58 218-275 2-62 (62)
300 COG3629 DnrI DNA-binding trans 77.3 65 0.0014 31.0 13.0 142 140-284 49-224 (280)
301 KOG3552 FERM domain protein FR 77.2 3.8 8.3E-05 45.4 5.2 75 86-168 58-132 (1298)
302 PF07720 TPR_3: Tetratricopept 77.0 4.8 0.0001 26.9 3.9 28 219-246 5-34 (36)
303 KOG3824 Huntingtin interacting 75.7 10 0.00023 37.7 7.3 65 217-284 118-182 (472)
304 KOG1586 Protein required for f 75.2 6.2 0.00014 37.7 5.5 64 221-286 40-106 (288)
305 KOG4340 Uncharacterized conser 75.2 5 0.00011 39.8 5.0 50 226-278 21-70 (459)
306 PRK13184 pknD serine/threonine 74.7 16 0.00035 40.5 9.3 89 195-288 488-587 (932)
307 PF11874 DUF3394: Domain of un 74.5 6.4 0.00014 35.7 5.1 39 95-135 113-151 (183)
308 PRK11906 transcriptional regul 74.4 8.3 0.00018 39.5 6.5 54 228-284 317-370 (458)
309 COG3071 HemY Uncharacterized e 74.3 17 0.00036 36.7 8.4 67 220-286 268-362 (400)
310 cd02656 MIT MIT: domain contai 74.3 6.3 0.00014 29.6 4.4 27 217-243 8-34 (75)
311 KOG1310 WD40 repeat protein [G 73.9 4.7 0.0001 42.5 4.6 72 210-284 369-443 (758)
312 cd02678 MIT_VPS4 MIT: domain c 73.6 6.6 0.00014 29.8 4.4 28 216-243 7-34 (75)
313 cd02680 MIT_calpain7_2 MIT: do 73.3 5.1 0.00011 31.2 3.7 28 216-243 7-34 (75)
314 PF12862 Apc5: Anaphase-promot 72.9 13 0.00029 29.0 6.1 35 216-250 42-76 (94)
315 KOG0546 HSP90 co-chaperone CPR 72.8 2.4 5.2E-05 42.2 2.2 65 220-287 280-344 (372)
316 cd02684 MIT_2 MIT: domain cont 72.7 6.5 0.00014 30.3 4.2 28 216-243 7-34 (75)
317 PF02259 FAT: FAT domain; Int 72.5 53 0.0011 30.2 10.9 63 219-284 256-341 (352)
318 PF05843 Suf: Suppressor of fo 72.2 17 0.00038 33.9 7.7 61 218-281 38-99 (280)
319 PF02064 MAS20: MAS20 protein 71.8 11 0.00025 31.9 5.7 34 217-250 65-98 (121)
320 PF08631 SPO22: Meiosis protei 71.7 39 0.00084 31.4 9.9 62 216-278 36-109 (278)
321 KOG3081 Vesicle coat complex C 71.1 19 0.00042 34.9 7.8 67 220-289 212-278 (299)
322 KOG3783 Uncharacterized conser 71.0 20 0.00044 37.5 8.4 65 218-282 452-521 (546)
323 PF00244 14-3-3: 14-3-3 protei 70.3 10 0.00022 35.0 5.7 57 232-288 143-205 (236)
324 PF14561 TPR_20: Tetratricopep 69.6 51 0.0011 26.0 8.8 46 234-282 7-52 (90)
325 KOG1586 Protein required for f 69.5 16 0.00034 35.1 6.7 63 219-281 77-143 (288)
326 PF07721 TPR_4: Tetratricopept 69.2 6.9 0.00015 23.7 2.9 22 218-239 4-25 (26)
327 KOG3549 Syntrophins (type gamm 68.5 11 0.00023 37.9 5.6 82 80-165 49-136 (505)
328 cd02679 MIT_spastin MIT: domai 68.4 9.8 0.00021 29.9 4.4 30 214-243 7-36 (79)
329 COG0790 FOG: TPR repeat, SEL1 68.3 48 0.001 30.2 9.6 75 206-286 178-271 (292)
330 PF07720 TPR_3: Tetratricopept 68.2 14 0.00029 24.7 4.4 30 254-283 3-34 (36)
331 KOG3651 Protein kinase C, alph 68.1 5 0.00011 39.5 3.2 74 95-172 18-93 (429)
332 PF10255 Paf67: RNA polymerase 68.1 10 0.00022 38.3 5.4 60 219-279 126-191 (404)
333 cd02677 MIT_SNX15 MIT: domain 66.5 9.4 0.0002 29.5 3.9 27 217-243 8-34 (75)
334 COG4235 Cytochrome c biogenesi 66.4 20 0.00042 34.7 6.8 56 229-287 136-191 (287)
335 PF10516 SHNi-TPR: SHNi-TPR; 66.3 8.1 0.00018 26.3 3.1 27 219-245 5-31 (38)
336 KOG1550 Extracellular protein 66.3 32 0.0007 35.5 8.9 61 219-284 292-360 (552)
337 PF04495 GRASP55_65: GRASP55/6 66.0 17 0.00038 31.1 5.8 68 93-167 26-100 (138)
338 COG4700 Uncharacterized protei 65.4 35 0.00077 32.0 7.9 66 219-286 128-193 (251)
339 PF10516 SHNi-TPR: SHNi-TPR; 64.7 13 0.00029 25.2 3.9 28 254-281 3-30 (38)
340 KOG1550 Extracellular protein 64.0 27 0.00058 36.1 7.8 74 204-282 314-394 (552)
341 TIGR03504 FimV_Cterm FimV C-te 63.8 12 0.00026 26.2 3.6 26 219-244 3-28 (44)
342 PF08238 Sel1: Sel1 repeat; I 63.6 16 0.00036 23.0 4.1 30 253-282 2-38 (39)
343 PF11846 DUF3366: Domain of un 62.7 27 0.00058 30.5 6.6 56 229-288 125-181 (193)
344 PF01535 PPR: PPR repeat; Int 62.7 12 0.00027 22.1 3.2 30 254-283 2-31 (31)
345 PF04053 Coatomer_WDAD: Coatom 62.6 67 0.0014 32.6 10.1 152 117-279 197-374 (443)
346 PF04212 MIT: MIT (microtubule 62.5 18 0.00038 26.7 4.6 29 253-281 6-34 (69)
347 smart00671 SEL1 Sel1-like repe 62.5 19 0.00041 22.2 4.2 29 254-282 3-35 (36)
348 PF12854 PPR_1: PPR repeat 62.4 20 0.00044 23.0 4.4 25 253-277 8-32 (34)
349 KOG3617 WD40 and TPR repeat-co 62.4 42 0.00092 37.5 9.0 74 193-279 811-885 (1416)
350 cd02680 MIT_calpain7_2 MIT: do 62.1 12 0.00026 29.2 3.7 34 230-281 2-35 (75)
351 PF04781 DUF627: Protein of un 61.4 23 0.0005 29.7 5.5 61 221-281 2-73 (111)
352 KOG2610 Uncharacterized conser 61.2 47 0.001 33.6 8.5 91 183-279 143-274 (491)
353 TIGR00756 PPR pentatricopeptid 60.9 22 0.00048 21.1 4.2 29 255-283 3-31 (35)
354 KOG4151 Myosin assembly protei 58.6 12 0.00027 40.4 4.3 67 217-283 55-124 (748)
355 PF07219 HemY_N: HemY protein 57.7 80 0.0017 25.4 8.1 33 215-247 59-91 (108)
356 cd02679 MIT_spastin MIT: domai 57.6 18 0.00039 28.5 4.0 26 254-279 10-35 (79)
357 cd02682 MIT_AAA_Arch MIT: doma 57.4 21 0.00046 27.9 4.4 29 253-281 7-35 (75)
358 KOG2796 Uncharacterized conser 55.3 18 0.00038 35.5 4.3 89 185-273 253-348 (366)
359 KOG3364 Membrane protein invol 54.9 14 0.0003 32.5 3.3 33 219-251 75-107 (149)
360 KOG0495 HAT repeat protein [RN 53.9 38 0.00083 36.8 6.9 62 218-282 820-881 (913)
361 TIGR00985 3a0801s04tom mitocho 53.8 21 0.00045 31.4 4.2 32 219-250 94-126 (148)
362 PF13041 PPR_2: PPR repeat fam 53.7 39 0.00085 22.8 4.9 24 224-247 12-37 (50)
363 PF01436 NHL: NHL repeat; Int 53.4 14 0.00031 22.9 2.3 19 91-111 1-19 (28)
364 PF10602 RPN7: 26S proteasome 53.3 30 0.00066 30.4 5.3 33 250-282 34-66 (177)
365 COG3014 Uncharacterized protei 52.9 56 0.0012 33.0 7.5 67 216-282 59-155 (449)
366 PF09613 HrpB1_HrpK: Bacterial 52.7 52 0.0011 29.3 6.6 49 218-269 47-95 (160)
367 PF13041 PPR_2: PPR repeat fam 52.6 41 0.00089 22.7 4.8 32 253-284 4-35 (50)
368 PF02259 FAT: FAT domain; Int 52.6 1E+02 0.0022 28.3 8.9 65 216-280 147-212 (352)
369 PF09205 DUF1955: Domain of un 52.0 1.1E+02 0.0025 27.1 8.4 65 216-284 86-152 (161)
370 PF13812 PPR_3: Pentatricopept 51.9 46 0.00099 20.0 4.6 30 254-283 3-32 (34)
371 PHA02537 M terminase endonucle 51.7 43 0.00093 31.4 6.2 59 226-284 94-210 (230)
372 PLN00207 polyribonucleotide nu 51.1 77 0.0017 35.3 8.9 17 124-140 108-124 (891)
373 PF07079 DUF1347: Protein of u 50.9 67 0.0015 33.5 7.9 56 218-277 465-520 (549)
374 PF11207 DUF2989: Protein of u 50.8 86 0.0019 29.0 7.9 71 182-272 127-198 (203)
375 KOG2471 TPR repeat-containing 50.7 46 0.001 35.1 6.7 69 189-263 288-380 (696)
376 COG5187 RPN7 26S proteasome re 50.0 64 0.0014 32.1 7.2 87 192-278 47-141 (412)
377 TIGR02710 CRISPR-associated pr 49.9 63 0.0014 32.4 7.4 58 220-277 135-196 (380)
378 smart00101 14_3_3 14-3-3 homol 49.3 39 0.00085 31.7 5.6 54 231-284 144-203 (244)
379 COG0790 FOG: TPR repeat, SEL1 48.6 1.7E+02 0.0036 26.7 9.6 78 204-283 98-186 (292)
380 COG3480 SdrC Predicted secrete 47.9 50 0.0011 32.7 6.2 67 91-171 121-190 (342)
381 TIGR02710 CRISPR-associated pr 45.9 1.5E+02 0.0034 29.7 9.5 123 154-281 110-275 (380)
382 KOG1738 Membrane-associated gu 45.6 20 0.00043 38.1 3.3 72 93-168 210-284 (638)
383 PF09670 Cas_Cas02710: CRISPR- 45.1 1.1E+02 0.0023 30.3 8.2 61 219-281 135-198 (379)
384 cd02684 MIT_2 MIT: domain cont 43.6 32 0.0007 26.4 3.5 32 231-280 3-34 (75)
385 KOG1585 Protein required for f 43.5 1.5E+02 0.0033 28.9 8.5 59 219-277 114-175 (308)
386 PF04781 DUF627: Protein of un 43.4 46 0.001 27.9 4.6 48 232-282 61-108 (111)
387 PF09670 Cas_Cas02710: CRISPR- 43.2 2.8E+02 0.0061 27.4 10.8 100 180-281 134-270 (379)
388 COG3947 Response regulator con 43.0 1.1E+02 0.0024 30.3 7.7 54 222-278 286-339 (361)
389 cd03701 IF2_IF5B_II IF2_IF5B_I 43.0 34 0.00074 27.2 3.6 37 95-138 2-40 (95)
390 PF09986 DUF2225: Uncharacteri 40.7 81 0.0018 28.7 6.2 58 224-281 86-147 (214)
391 smart00745 MIT Microtubule Int 40.3 56 0.0012 24.3 4.3 15 231-245 5-19 (77)
392 cd02677 MIT_SNX15 MIT: domain 39.8 32 0.00068 26.6 2.9 32 232-281 4-35 (75)
393 KOG1585 Protein required for f 39.5 1.1E+02 0.0023 29.9 6.8 66 213-280 48-119 (308)
394 KOG1920 IkappaB kinase complex 39.0 34 0.00075 39.0 4.0 24 255-278 955-978 (1265)
395 PF10952 DUF2753: Protein of u 38.8 95 0.0021 27.1 5.8 61 220-280 6-78 (140)
396 PF15297 CKAP2_C: Cytoskeleton 38.8 1.8E+02 0.004 29.0 8.6 73 218-290 105-178 (353)
397 TIGR03362 VI_chp_7 type VI sec 38.6 1.9E+02 0.0041 28.0 8.6 65 217-281 215-279 (301)
398 PF14863 Alkyl_sulf_dimr: Alky 38.4 70 0.0015 27.6 5.1 50 216-268 71-120 (141)
399 KOG2047 mRNA splicing factor [ 38.3 1E+02 0.0022 33.6 7.1 60 220-279 392-452 (835)
400 PRK03760 hypothetical protein; 37.9 52 0.0011 27.5 4.1 36 92-131 78-113 (117)
401 KOG4056 Translocase of outer m 37.8 91 0.002 27.4 5.6 31 218-248 84-114 (143)
402 PF11207 DUF2989: Protein of u 37.6 3.3E+02 0.0072 25.2 9.6 52 229-284 121-172 (203)
403 PF10938 YfdX: YfdX protein; 37.6 1.4E+02 0.003 25.9 6.9 64 217-280 77-145 (155)
404 COG0361 InfA Translation initi 36.9 78 0.0017 24.9 4.6 57 85-150 7-67 (75)
405 cd04456 S1_IF1A_like S1_IF1A_l 36.6 50 0.0011 25.7 3.6 41 90-132 5-47 (78)
406 PF13281 DUF4071: Domain of un 36.2 1.3E+02 0.0027 30.3 7.1 58 230-287 241-340 (374)
407 KOG1464 COP9 signalosome, subu 36.2 1E+02 0.0023 30.5 6.4 52 227-278 39-91 (440)
408 KOG3551 Syntrophins (type beta 35.7 50 0.0011 33.7 4.2 74 87-164 86-165 (506)
409 KOG1941 Acetylcholine receptor 35.3 39 0.00085 34.5 3.4 28 253-280 84-111 (518)
410 COG3031 PulC Type II secretory 34.8 59 0.0013 31.2 4.3 64 92-170 204-267 (275)
411 PRK04012 translation initiatio 34.7 1.1E+02 0.0025 25.0 5.5 47 84-132 20-68 (100)
412 KOG0687 26S proteasome regulat 34.7 1.3E+02 0.0028 30.3 6.8 35 250-284 102-140 (393)
413 KOG2709 Uncharacterized conser 34.7 38 0.00083 34.9 3.2 25 254-278 24-48 (560)
414 PF02643 DUF192: Uncharacteriz 34.6 31 0.00067 28.1 2.2 27 103-131 79-105 (108)
415 PF00591 Glycos_transf_3: Glyc 34.1 99 0.0022 28.4 5.7 55 228-282 192-249 (252)
416 KOG0739 AAA+-type ATPase [Post 34.0 1.6E+02 0.0035 29.6 7.3 27 217-243 12-38 (439)
417 KOG2758 Translation initiation 33.7 2.8E+02 0.0062 28.0 8.9 62 216-278 130-193 (432)
418 COG4976 Predicted methyltransf 33.5 63 0.0014 31.1 4.3 45 204-248 17-62 (287)
419 smart00386 HAT HAT (Half-A-TPR 33.4 76 0.0017 18.4 3.4 20 229-248 1-20 (33)
420 KOG2709 Uncharacterized conser 32.9 1.8E+02 0.004 30.2 7.7 39 205-243 12-50 (560)
421 cd03702 IF2_mtIF2_II This fami 32.8 57 0.0012 26.2 3.4 44 95-145 2-49 (95)
422 PF13281 DUF4071: Domain of un 32.7 1.4E+02 0.0031 29.9 6.8 69 219-287 183-261 (374)
423 KOG2053 Mitochondrial inherita 32.7 1.4E+02 0.003 33.4 7.2 64 223-289 198-263 (932)
424 PRK10316 hypothetical protein; 32.5 2E+02 0.0043 26.8 7.3 60 216-280 128-197 (209)
425 KOG1070 rRNA processing protei 32.5 2.1E+02 0.0047 33.8 8.8 63 219-284 1534-1596(1710)
426 TIGR02561 HrpB1_HrpK type III 32.3 1.5E+02 0.0032 26.3 6.2 49 218-269 47-95 (153)
427 KOG4814 Uncharacterized conser 32.0 1.5E+02 0.0032 32.5 7.1 59 220-281 399-457 (872)
428 PRK14533 groES co-chaperonin G 32.0 74 0.0016 25.6 3.9 26 107-133 38-63 (91)
429 cd02683 MIT_1 MIT: domain cont 31.5 91 0.002 24.0 4.3 19 263-281 17-35 (77)
430 cd02656 MIT MIT: domain contai 31.3 1E+02 0.0022 22.9 4.5 16 265-280 19-34 (75)
431 PTZ00414 10 kDa heat shock pro 30.8 73 0.0016 26.2 3.8 23 109-132 49-71 (100)
432 PRK03987 translation initiatio 30.8 4.1E+02 0.0089 25.2 9.3 130 85-247 10-146 (262)
433 cd02681 MIT_calpain7_1 MIT: do 30.2 1.1E+02 0.0023 23.8 4.4 17 264-280 18-34 (76)
434 PF12753 Nro1: Nuclear pore co 29.9 1.1E+02 0.0024 31.1 5.6 53 231-289 334-399 (404)
435 cd03703 aeIF5B_II aeIF5B_II: T 29.9 82 0.0018 26.3 4.0 36 96-138 3-40 (110)
436 KOG1421 Predicted signaling-as 29.3 78 0.0017 34.6 4.6 32 103-136 301-332 (955)
437 smart00652 eIF1a eukaryotic tr 29.3 1.3E+02 0.0029 23.6 4.9 46 85-132 5-52 (83)
438 KOG3617 WD40 and TPR repeat-co 28.8 2.1E+02 0.0045 32.4 7.7 55 225-280 922-995 (1416)
439 KOG2997 F-box protein FBX9 [Ge 28.7 79 0.0017 31.5 4.2 39 210-248 14-52 (366)
440 COG1430 Uncharacterized conser 28.6 70 0.0015 27.4 3.4 41 92-134 81-121 (126)
441 PRK10941 hypothetical protein; 28.1 1.1E+02 0.0024 29.0 5.1 39 252-290 181-219 (269)
442 cd02678 MIT_VPS4 MIT: domain c 28.1 1.2E+02 0.0027 22.8 4.4 15 231-245 3-17 (75)
443 KOG1320 Serine protease [Postt 27.9 1.4E+02 0.003 31.0 5.9 59 106-171 399-458 (473)
444 PRK00364 groES co-chaperonin G 27.1 93 0.002 25.0 3.8 11 123-133 58-68 (95)
445 cd09243 BRO1_Brox_like Protein 26.4 5.3E+02 0.011 25.5 9.6 79 196-280 184-276 (353)
446 KOG1915 Cell cycle control pro 25.1 4.7E+02 0.01 27.9 9.1 54 226-282 448-501 (677)
447 PF01333 Apocytochr_F_C: Apocy 24.9 61 0.0013 27.6 2.4 36 86-134 23-58 (118)
448 KOG0292 Vesicle coat complex C 24.4 1.6E+02 0.0034 33.3 5.9 26 218-243 994-1019(1202)
449 KOG2047 mRNA splicing factor [ 24.1 2.4E+02 0.0052 30.9 7.0 61 226-286 358-421 (835)
450 PRK04778 septation ring format 23.8 1.8E+02 0.0039 30.2 6.1 32 216-247 520-552 (569)
451 PF10345 Cohesin_load: Cohesin 23.7 2.9E+02 0.0064 28.7 7.6 63 218-281 62-128 (608)
452 PF10345 Cohesin_load: Cohesin 23.6 1.8E+02 0.004 30.2 6.1 52 231-282 37-90 (608)
453 cd00320 cpn10 Chaperonin 10 Kd 23.4 1.4E+02 0.0029 23.9 4.0 12 123-134 57-68 (93)
454 KOG1520 Predicted alkaloid syn 22.9 1.6E+02 0.0035 29.7 5.3 20 91-111 114-133 (376)
455 PF04910 Tcf25: Transcriptiona 22.9 1.4E+02 0.003 29.4 4.8 48 231-279 10-67 (360)
456 cd00215 PTS_IIA_lac PTS_IIA, P 22.5 1.6E+02 0.0034 23.9 4.3 27 216-242 16-42 (97)
457 PF08626 TRAPPC9-Trs120: Trans 22.5 97 0.0021 35.2 4.1 48 219-266 246-296 (1185)
458 PRK09591 celC cellobiose phosp 22.2 1.6E+02 0.0035 24.2 4.3 28 216-243 21-48 (104)
459 KOG0686 COP9 signalosome, subu 21.8 4.2E+02 0.0091 27.4 7.9 64 218-281 153-216 (466)
460 PF11817 Foie-gras_1: Foie gra 21.8 2.2E+02 0.0048 26.0 5.7 48 233-280 156-206 (247)
461 TIGR00823 EIIA-LAC phosphotran 21.8 1.7E+02 0.0036 23.8 4.3 27 216-242 18-44 (99)
462 TIGR00739 yajC preprotein tran 21.6 57 0.0012 25.7 1.5 40 123-167 37-76 (84)
463 PF04184 ST7: ST7 protein; In 21.3 4.5E+02 0.0098 27.8 8.2 62 220-284 300-378 (539)
464 TIGR00985 3a0801s04tom mitocho 21.2 5.7E+02 0.012 22.5 9.4 27 255-281 93-120 (148)
465 PF03829 PTSIIA_gutA: PTS syst 21.2 1.1E+02 0.0023 25.7 3.2 51 106-167 39-90 (117)
466 PF02255 PTS_IIA: PTS system, 21.2 1.8E+02 0.0039 23.4 4.4 27 216-242 15-41 (96)
467 PF05131 Pep3_Vps18: Pep3/Vps1 21.0 1.2E+02 0.0026 26.2 3.5 92 124-219 48-145 (147)
468 PRK09681 putative type II secr 20.7 3E+02 0.0066 26.5 6.5 66 97-168 196-265 (276)
469 PF05843 Suf: Suppressor of fo 20.4 3.9E+02 0.0085 24.9 7.1 57 222-281 8-65 (280)
470 TIGR01245 trpD anthranilate ph 20.3 3.6E+02 0.0079 26.1 7.1 62 228-289 261-327 (330)
No 1
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.31 E-value=6e-12 Score=124.99 Aligned_cols=75 Identities=32% Similarity=0.505 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY 290 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir 290 (292)
..++|+|++|+++|+|++|+.+|++||+++|++.+...+|||+||||.++|++++|+++|++||+++...|+.|+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~ 150 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTIL 150 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 456799999999999999999999999999996555568999999999999999999999999999777776554
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.19 E-value=6.1e-11 Score=86.25 Aligned_cols=65 Identities=29% Similarity=0.419 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVKAGLSALEDALLAG 282 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg-q~eeALe~LekAIelG 282 (292)
+..++++|..++..|+|++|+..|+++|+++|++ ..+|+|+|.||..+| ++++|+.++++||++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3456799999999999999999999999999973 568999999999999 7999999999999975
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3.7e-10 Score=107.24 Aligned_cols=70 Identities=29% Similarity=0.345 Sum_probs=63.4
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 212 k~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+..+++..++|+.+++.++|++||.+|++||+++|++ ++.|.|+|.+|++||+++.|+++|+.||.+...
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence 3445667799999999999999999999999999985 677999999999999999999999999999755
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=5.9e-09 Score=75.21 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
+.+|..+++.|+|++|+..|+++++.+|++ ..+|+.+|.|+..+|++++|+..+++++++..++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999973 5689999999999999999999999999987654
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=4.1e-09 Score=88.84 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=74.5
Q ss_pred HHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
.+++..|.+..++. .|.+.....+...+ ++++|..+...|+|++|+..|+++++++|++ ..+|+|+|.||.
T Consensus 32 ~~~~~~g~~~~A~~-----~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~ 103 (144)
T PRK15359 32 YASWQEGDYSRAVI-----DFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLK 103 (144)
T ss_pred HHHHHcCCHHHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHH
Confidence 34445555554433 44444444444434 4699999999999999999999999999974 457999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCccChh
Q 022783 264 KLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~Df~ 287 (292)
.+|++++|+.+|++||++..++..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999988643
No 6
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.2e-08 Score=93.58 Aligned_cols=70 Identities=27% Similarity=0.391 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc--cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~--~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..++..+|+.+|+.|+|++|...|..||+++|.- ...+.+|.|+|.|+.+++.++.||++|.+||++|..
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 3456689999999999999999999999999963 345789999999999999999999999999999974
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=2e-08 Score=93.69 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=86.5
Q ss_pred ccHHHHHHHhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHH
Q 022783 178 LSEKEIIRAERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA 254 (292)
Q Consensus 178 ~~e~~~~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a 254 (292)
++..+.-...++.|.+...+....++ .|.+...+.+.. ..++++|..+...|+|++|++.|+++|+++|++ ..+
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a 134 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYA 134 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Confidence 33334456677888887777776665 666666665554 445699999999999999999999999999974 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 255 SYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 255 ~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
|+|+|.+|..+|++++|++++++|+++..+|.
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999988764
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.77 E-value=2.5e-08 Score=74.28 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGS----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALel----dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
-+.+.|..++..|+|++|++.|+++|++ .++..+...+++|+|.||..+|++++|++.+++|+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3459999999999999999999999954 3333355788999999999999999999999999986
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.3e-08 Score=98.92 Aligned_cols=91 Identities=16% Similarity=0.290 Sum_probs=72.9
Q ss_pred ccchhhHHHHHHH--hhHHHHHhhHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783 191 GVISNRVREIQMQ--NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (292)
Q Consensus 191 GvI~~~l~eiqea--~Y~kkk~lk~~-~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq 267 (292)
+++.+++++.++. .+....-.... ..+..+.|+.+|+.|+|.+|+..|++||..+|++ +.+|.|+|.||.++++
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKLGE 407 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHhh
Confidence 5667777777664 23222222222 3555688999999999999999999999999973 5689999999999999
Q ss_pred HHHHHHHHHHHHHhCcc
Q 022783 268 VKAGLSALEDALLAGYE 284 (292)
Q Consensus 268 ~eeALe~LekAIelG~~ 284 (292)
+..||.+|+++|++...
T Consensus 408 ~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHHHHHHHHhcCch
Confidence 99999999999999654
No 10
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=6e-08 Score=70.99 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=56.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
..++.+.++|++|++++++++.++|+. ..+|+++|.||..+|++++|+.+|+++++.++++-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 467899999999999999999999973 46799999999999999999999999999998753
No 11
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.2e-08 Score=96.38 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=77.1
Q ss_pred hhccccchhhHHHHHH------------HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-hhH
Q 022783 187 ERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSV 253 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqe------------a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-~a~ 253 (292)
+.=.+++.++.+|+++ ..|...+++++.+ +.|+.+|+.|+|.+|.++|..||.++|++.+ .+.
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k----~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK----ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH----hhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 3345677788888887 2444455555555 9999999999999999999999999998644 367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
+|+|+|.++.++|+..+||.+|+.|+++.-
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 899999999999999999999999999863
No 12
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.62 E-value=1.1e-07 Score=72.05 Aligned_cols=74 Identities=23% Similarity=0.597 Sum_probs=59.9
Q ss_pred EEEecC----CceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783 88 EVEIEQ----PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (292)
Q Consensus 88 ~v~l~K----PlGl~~~~~~~G---~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~ 160 (292)
+|+|.| |+|+.+..+.+. ++||.+|.|+|.|+++| |++||+|+.+.. .-......-+++..|+..+++
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg----~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEING----QSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETT----EESTTSBHHHHHHHHHHSTSE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCC----EeCCCCCHHHHHHHHHCCCCc
Confidence 355555 999999998774 99999999999999999 999999999874 222233455788899988889
Q ss_pred eEEEEe
Q 022783 161 LLMKMQ 166 (292)
Q Consensus 161 v~l~l~ 166 (292)
|.|+++
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 998875
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=3.1e-07 Score=77.41 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=69.4
Q ss_pred HHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 200 IQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 200 iqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
|.+..|.+...+.+. ..+..|..+++.|+|++|+..|.+++.++|.+ ..+|+++|.++..+|++++|+.++++|+
T Consensus 11 ~~~~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 11 IPEDILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred CHHHHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555443 36688999999999999999999999999974 5679999999999999999999999999
Q ss_pred HhCccChh
Q 022783 280 LAGYEDFK 287 (292)
Q Consensus 280 elG~~Df~ 287 (292)
++..++..
T Consensus 86 ~l~p~~~~ 93 (144)
T PRK15359 86 MLDASHPE 93 (144)
T ss_pred hcCCCCcH
Confidence 99887643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.59 E-value=2.4e-08 Score=102.90 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=90.8
Q ss_pred ccccccHHHH-H-HHh----------hccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHH
Q 022783 174 QTGELSEKEI-I-RAE----------RNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKF 238 (292)
Q Consensus 174 ~~~~~~e~~~-~-~a~----------rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~f 238 (292)
..|.|.|+-. | ||. -|.|-+-+...+++++ +|+++-++++.- +.++|+|+.|.+.+.|++|+.+|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 4466777642 3 544 3888888999999885 888888777775 55579999999999999999999
Q ss_pred HHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 239 ESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 239 ekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+||.+.|+ .+.+|-|+||+|..+|+++-||.++++||++.+.
T Consensus 276 ~rAl~lrpn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~ 318 (966)
T KOG4626|consen 276 LRALNLRPN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN 318 (966)
T ss_pred HHHHhcCCc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCC
Confidence 999999997 4778999999999999999999999999998754
No 15
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=3.2e-07 Score=71.07 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
..+..|..+++.|+|++|+..|++++...|+......+++++|-||..+|++++|+..++++++...++
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 457899999999999999999999999999865556689999999999999999999999999997664
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.3e-07 Score=95.37 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
.+.++|+.+|+.|+|++||++|++||+++|+ + +.-|.|+|.||..+|+|++-+++|.+|+++..+-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y 182 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--E-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDY 182 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--C-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence 3459999999999999999999999999997 2 5669999999999999999999999999998653
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.55 E-value=5.5e-07 Score=77.13 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-.+++|..+...|+|++|+.+|++++++.|+..+...+|+|+|.+|.++|++++|+..+++|+++...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34688888888888888888888888777654344567888888888888888888888888887544
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.52 E-value=5.4e-07 Score=91.45 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=75.9
Q ss_pred HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783 185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy 262 (292)
.++.+.|+..-..+.+..+ .|.+...+.+...-++++|..+.++|+|++|++.|++||+++|++ ..+|+++|.+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---SKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Confidence 4566777777666666665 555555555554445699999999999999999999999999974 56799999999
Q ss_pred HhcCCHHHHHHHHHHHHHhC
Q 022783 263 SKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 263 akLgq~eeALe~LekAIelG 282 (292)
..+|++++|+.++..++.++
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~ 224 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID 224 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998887664
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.51 E-value=8e-07 Score=85.64 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=75.8
Q ss_pred HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy 262 (292)
-..+|..|++..++. .|.+...+.+.... ++++|..+.+.|+|++|+..+++||.++|++ ..+|+++|.+|
T Consensus 9 a~~a~~~~~~~~Ai~-----~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVD-----LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHH
Confidence 345566666665543 45555555554433 4599999999999999999999999999974 56799999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCccCh
Q 022783 263 SKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 263 akLgq~eeALe~LekAIelG~~Df 286 (292)
..+|++++|+.+|++|+++..++.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999987753
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=7.2e-07 Score=71.84 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
...++.|..+++.|+|++|+..|++++.++|++ ...||++|.||..+|++++|+..+++++++..++..
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD---PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 344699999999999999999999999999974 457999999999999999999999999999887654
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.45 E-value=3.9e-07 Score=94.14 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=67.2
Q ss_pred ccccHHHH-H-HH----------hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 022783 176 GELSEKEI-I-RA----------ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFES 240 (292)
Q Consensus 176 ~~~~e~~~-~-~a----------~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fek 240 (292)
|+.+|++. | ++ +-|.|+|..-...|.++ .|.++-+..+.--.+. |+|.+|.+.|++++||.+|..
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 56677763 3 33 34777777777777775 4544444444333333 777777777777777777777
Q ss_pred HHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 241 VLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 241 ALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
||.++|++ +.+|.|++..|..+|+.+.|+.++++||.+.+
T Consensus 414 alrI~P~f---Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 414 ALRIKPTF---ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHhcCchH---HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 77777764 44566666666666666666666666666653
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=1.5e-06 Score=76.10 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=62.9
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.|...-+..... .-++++|..+...|+|++||..|.+|+.++|++ ..+++|.|.||..+|+.+.|.++++.||...
T Consensus 57 ~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 57 LFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333333333333 334699999999999999999999999999974 4579999999999999999999999999887
No 23
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.43 E-value=1.5e-06 Score=73.87 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
...+++.|..+...|+|++|+..|.+++.+.|+..+...+|+|+|++|..+|++++|+..|++|+++-.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345568999999999999999999999988776444456899999999999999999999999998743
No 24
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.4e-06 Score=70.04 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=65.9
Q ss_pred HHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 206 MKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 206 ~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+.-.+.+.. ...+..|..+++.|+|++|+..|+++++++|++ ..+|+++|.||.++|++++|+..++++++.+.+
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333344433 335699999999999999999999999999974 567999999999999999999999999999877
Q ss_pred Chh
Q 022783 285 DFK 287 (292)
Q Consensus 285 Df~ 287 (292)
+..
T Consensus 84 ~~~ 86 (135)
T TIGR02552 84 DPR 86 (135)
T ss_pred ChH
Confidence 643
No 25
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=1.5e-06 Score=60.84 Aligned_cols=64 Identities=33% Similarity=0.429 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
..+..|..+...+++++|++.|++++...|.. ..+++++|.+|..+|++++|+..++++++...
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 44688888888899999999999999888863 24688999999999999999999988887653
No 26
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=3.2e-07 Score=66.23 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=51.3
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 225 L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+++.|+|++|++.|++++..+|++ ..+++++|-||.++|++++|...|+++++...+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 568999999999999999999974 457999999999999999999999999998766
No 27
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.40 E-value=1.3e-06 Score=84.22 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
+++.+|..++..|+|++|++.|++||+++|++ ..+|+|+|.||.++|++++|+.+|++||++...+.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 45688999999999999999999999999974 56799999999999999999999999999987643
No 28
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.38 E-value=3.4e-06 Score=72.22 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=76.7
Q ss_pred HHHhhccccchhhHHHHHHH--hhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783 184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN 257 (292)
..++++.|.+.......+++ .|.+.....+. ....+++|..+++.|+|++|+..|++++.++|+. ..++++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---PSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Confidence 44566667666666666665 33333322222 2345699999999999999999999999999973 567999
Q ss_pred HHHHHHhcCC--------------HHHHHHHHHHHHHhCccChhh
Q 022783 258 VACCYSKLNQ--------------VKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 258 ~AccyakLgq--------------~eeALe~LekAIelG~~Df~~ 288 (292)
++.+|..+|+ +++|++.+++++.++.+++..
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~ 156 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIE 156 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHH
Confidence 9999999998 688888899998888887643
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=1.7e-06 Score=65.71 Aligned_cols=58 Identities=29% Similarity=0.387 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
-.+.+|..+++.|+|++|+..+++ ++.+|.+ ...+|-+|.||.++|++++|+++|++|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 345799999999999999999999 8888763 346778899999999999999999986
No 30
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.35 E-value=2.6e-06 Score=59.53 Aligned_cols=66 Identities=32% Similarity=0.427 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
.++.|..++..|+|++|+..|++++...|+. ..+++++|.||..++++++|+..++++++....+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4588999999999999999999999999974 36799999999999999999999999999876654
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.34 E-value=2.7e-06 Score=86.44 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
...++|+.+++.|+|++||+.|+++|+++|+ ...|+|+|.||.++|++++|+++|++||++..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 3458999999999999999999999999996 35799999999999999999999999999987654
No 32
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=2.7e-06 Score=74.58 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
..+..|..++..|+|++|...|+-...++|.+ ...|||+|.|+-.+|+|++||+++.+|+.+..+|+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 44589999999999999999999999999985 456999999999999999999999999999987764
No 33
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-06 Score=84.76 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~ 288 (292)
+..+.+.||.+|+.++|..|+++|+++|..+ ++..-.+++|.|+|.|+..+|+|..||.+|.+|+.+.....+.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 3444589999999999999999999999644 4333347899999999999999999999999999998765443
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=5.7e-06 Score=64.00 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+..|..+.+.|+|++|++.|++++..+|+......+++++|.+|...|++++|+..+++++....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 45799999999999999999999999999875444568999999999999999999999999987543
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=3.5e-06 Score=74.95 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=76.2
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHH-HHcCC--HHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNVAC 260 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L-~k~gd--YeeAIe~fekALeldP~~~d~a~a~YN~Ac 260 (292)
.++.|.+....++...+ .|.+...+.+...+. .+.|.++ +..|+ +++|+..++++++.+|++ ..+++|+|.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~ 152 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHH
Confidence 44556666666666665 666666666655443 5889876 67787 599999999999999974 457999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 261 CYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 261 cyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
++..+|++++|+.++++++++...+-+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999876543
No 36
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=89.64 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=79.6
Q ss_pred ccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783 189 NSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (292)
Q Consensus 189 N~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL 265 (292)
..|++....+++..+ .|..+...+++.+..+ .+|-+|....+++|||..|++||++.|.+ --++||+|.||..+
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhh
Confidence 457777778888886 7777777777777777 78999999999999999999999999984 33699999999999
Q ss_pred CCHHHHHHHHHHHHHhCcc
Q 022783 266 NQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 266 gq~eeALe~LekAIelG~~ 284 (292)
|.|++|+++|-.||.+--.
T Consensus 512 G~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 9999999999999987544
No 37
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.26 E-value=1.4e-06 Score=85.41 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
..+.|+.||++|+|+|||+||.++|..+|.+ .+.|-|+|.+|.++..+..|-.+|+.||.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3488999999999999999999999999954 5679999999999999999999999999885
No 38
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2.8e-06 Score=81.14 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=80.8
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
+.+.|+=..+-+.++++ .|-++.++.+..--++ |++-+|.++|.|+.|++-.+.||.+||. ++.+|--++.+|+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~RLG~A~~ 160 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHHHHHHHHH
Confidence 44566655555555554 8888888877665666 9999999999999999999999999996 6889999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCcc
Q 022783 264 KLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~ 284 (292)
-+|++++|++.|++||++-++
T Consensus 161 ~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCC
Confidence 999999999999999999766
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.23 E-value=7.2e-06 Score=76.59 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
..++++|..+...|++++|+..|+++|+++|++ ..+|+|+|.+|..+|++++|++++++|+++..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 446799999999999999999999999999974 5689999999999999999999999999998664
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.16 E-value=5.6e-06 Score=89.87 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
.+|.|.+...+.+..++ .|.+...+.+..... .++|..+.+.|++++|++.|++|++++|++ ..+++|+|.+|.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~ 688 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---PALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 34555555555555554 555555555544333 488888888888888888888888888863 456888888888
Q ss_pred hcCCHHHHHHHHHHHHHhCcc
Q 022783 264 KLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~ 284 (292)
.+|++++|+.+|++|+++-.+
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888887654
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.13 E-value=1.3e-05 Score=81.13 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=67.0
Q ss_pred hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+.+..++.++..+. ..+|..+...|+|++|+..|++||+++|++ ..+|+++|.+|..+|++++|+..+++|+++.
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 455555555544333 488999999999999999999999999984 4579999999999999999999999999998
Q ss_pred ccCh
Q 022783 283 YEDF 286 (292)
Q Consensus 283 ~~Df 286 (292)
..+.
T Consensus 403 P~~~ 406 (553)
T PRK12370 403 PTRA 406 (553)
T ss_pred CCCh
Confidence 8753
No 42
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.12 E-value=6e-06 Score=71.81 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+|+.+.+.|+.++||+.|.++|.+.|. .+.+|+|+|-.|-.+|+.++|+++|++|+++--+
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 5689999999999999999999999996 4668999999999999999999999999998644
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=1.7e-05 Score=67.35 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=66.5
Q ss_pred HHHhhccccchhhHHHHHHH--hhHHHHHhhHh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHH
Q 022783 184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~----~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN 257 (292)
...+.+.|..........++ .|.+...+... ....++.|..+...|++++|+..|++|+.++|.. ...|+|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHH
Confidence 34445556655554445554 55555444322 2345799999999999999999999999999974 456888
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHHHH
Q 022783 258 VACCYS-------KLNQVKAGLSALEDALL 280 (292)
Q Consensus 258 ~Accya-------kLgq~eeALe~LekAIe 280 (292)
+|.+|. .+|++++|+..+++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 888888 88898877777766644
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.06 E-value=2.4e-05 Score=65.27 Aligned_cols=64 Identities=25% Similarity=0.304 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+.|..++..|+|++|++.|++++...+.. ....+++++|.||..+|++++|+..++++++...+
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 55555555555555555555555432211 12234666666666666666666666666665443
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.04 E-value=3.1e-05 Score=64.54 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
...+.|..+++.|++++|+..|++++..+|+. ..+++++|.+|..+|++++|+..++++++...
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQR---PESLLELAELYYLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44588999999999999999999999999863 45689999999999999999999999998843
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.03 E-value=2.8e-05 Score=68.58 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
...+++|..+++.|+|++|+..|++++..+|+......+|+++|-+|..+|++++|+..++++++...++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 4457888899999999999999999998888754445678999999999999999999999998876543
No 47
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.03 E-value=2.9e-05 Score=57.93 Aligned_cols=67 Identities=21% Similarity=0.538 Sum_probs=54.0
Q ss_pred cCCceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc--chhhHHHHhhccCCceEEEE
Q 022783 92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKM 165 (292)
Q Consensus 92 ~KPlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~--~~g~~~~ai~~r~g~v~l~l 165 (292)
.+|+|+.+....+ ++++|..|.+++.|+++| |++||+|+.+-. ++.. .+.+++.+++...+++.|.+
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing------~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNG------VSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECC------EEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4679999988754 699999999999999988 999999999764 2444 66677888887666777765
No 48
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.01 E-value=2.4e-05 Score=57.03 Aligned_cols=66 Identities=21% Similarity=0.474 Sum_probs=51.5
Q ss_pred CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhccC-CceEEEE
Q 022783 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKM 165 (292)
Q Consensus 93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r~-g~v~l~l 165 (292)
.|+|+.+....+++++|..|.+++.|+++| |++||+|+.+-.. +.... ..+...|+... .++.|++
T Consensus 1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGT------DVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 479999998877799999999999999988 9999999998532 22233 56677788666 5667665
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=9.9e-06 Score=82.19 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+...+|+.++..|+|+.||.+|++||.++|.+ .++|.|+..||+.+|+|++|+.+-.+++++.++
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~ 68 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD 68 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 345689999999999999999999999999985 678999999999999999999999999999754
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.00 E-value=2.6e-05 Score=68.73 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCccC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--------NQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL--------gq~eeALe~LekAIelG~~D 285 (292)
..+.+|..+++.|+|++|++.|+++++..|+..+...++|+++-||..+ |++++|++.++++++...++
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3479999999999999999999999999998766556899999999987 88999999999999986654
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=2e-05 Score=82.88 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=36.3
Q ss_pred hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+....++.++...+ .+.+..|.+++++++|+..++++|..+|++ ..+++++|.|+..+|++++|++.|++++..
T Consensus 108 ~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 108 VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 333334444433333 255555555555555555555555555542 334555555555555555555555555543
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=2.1e-05 Score=82.69 Aligned_cols=94 Identities=16% Similarity=-0.022 Sum_probs=76.4
Q ss_pred HhhccccchhhHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783 186 AERNSGVISNRVREIQMQ--NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (292)
Q Consensus 186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy 262 (292)
|..|.+.+..++++++++ .+.+.....+.. ...+.+|..+.+.|+|++|++.|++++..+|++ ..+|.++|.++
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l 198 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Confidence 556777777777777775 454444444444 444699999999999999999999999977753 56799999999
Q ss_pred HhcCCHHHHHHHHHHHHHhC
Q 022783 263 SKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 263 akLgq~eeALe~LekAIelG 282 (292)
..+|+.++|..+|++||+.-
T Consensus 199 ~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999873
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00011 Score=72.73 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
+|++..+.++++|.+||.+-+++|+++|++ ..++|-++-||..+|+|+.|+.++++|+++-+.+ +.|
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~ 327 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNN---VKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAA 327 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHH
Confidence 599999999999999999999999999986 4689999999999999999999999999998876 444
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.91 E-value=8.9e-05 Score=66.00 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=65.2
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH-HhcCC--HHHHHHHHHHHH
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VKAGLSALEDAL 279 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy-akLgq--~eeALe~LekAI 279 (292)
.+.++-...++. .-++.+|..+...|+|++|+..|++|+.++|++ ..++++.|.|+ ...|+ .++|+..+++|+
T Consensus 61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444444444444 445699999999999999999999999999974 56799999885 67787 599999999999
Q ss_pred HhCccCh
Q 022783 280 LAGYEDF 286 (292)
Q Consensus 280 elG~~Df 286 (292)
++..++-
T Consensus 138 ~~dP~~~ 144 (198)
T PRK10370 138 ALDANEV 144 (198)
T ss_pred HhCCCCh
Confidence 9998764
No 55
>PLN02789 farnesyltranstransferase
Probab=97.90 E-value=6.2e-05 Score=72.20 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=76.7
Q ss_pred HHHhhccccchhhHH-HHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCH--HHHHHHHHHHHcCCCCccchhHHHHH
Q 022783 184 IRAERNSGVISNRVR-EIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKY--EVAREKFESVLGSKPTPEESSVASYN 257 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~-eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdY--eeAIe~fekALeldP~~~d~a~a~YN 257 (292)
|.+..+.|.+...++ ..+++ .+.+..+..++.++.+ .++..+.+.+++ +++++.++++|+++|++ ..+|++
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~ 147 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSH 147 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHH
Confidence 345555566666665 23333 4555555555556655 788888888874 78999999999999984 457999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 258 VACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 258 ~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
++-++..+|++++||+.|+++|+..+.++.
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 999999999999999999999999888654
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=97.88 E-value=6e-05 Score=76.31 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=66.1
Q ss_pred cccchhhHHHHHHH--hhHHHHHhhHhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC
Q 022783 190 SGVISNRVREIQMQ--NYMKKKEQKERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (292)
Q Consensus 190 ~GvI~~~l~eiqea--~Y~kkk~lk~~~~-~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg 266 (292)
.|.+....++.+++ .|.+...+.++.. -.+.+|..+...|++++|+..|+++++++|.+ ..++++++.++..+|
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~---~~~~~~~~~~~~~~g 420 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR---AAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcc
Confidence 34444344444443 6666666665543 34689999999999999999999999999984 234566777777889
Q ss_pred CHHHHHHHHHHHHHhC
Q 022783 267 QVKAGLSALEDALLAG 282 (292)
Q Consensus 267 q~eeALe~LekAIelG 282 (292)
++++|+..++++++..
T Consensus 421 ~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 421 GIDDAIRLGDELRSQH 436 (553)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988765
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.85 E-value=0.0001 Score=80.25 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=68.6
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.|.+...+.+.....++.|..+.+.|++++|+..|+++++++|++ ..+++|+|.++..+|++++|+..|++|+++.+
T Consensus 598 ~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555665555554455799999999999999999999999999974 46799999999999999999999999999987
Q ss_pred cCh
Q 022783 284 EDF 286 (292)
Q Consensus 284 ~Df 286 (292)
++.
T Consensus 675 ~~~ 677 (987)
T PRK09782 675 DDP 677 (987)
T ss_pred CCH
Confidence 754
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.85 E-value=4.1e-05 Score=71.30 Aligned_cols=94 Identities=22% Similarity=0.186 Sum_probs=70.6
Q ss_pred ccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783 191 GVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (292)
Q Consensus 191 GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq 267 (292)
..+..++.++..+ .|.++..+.++.-+ .-|-|-=|+..|+|++|...|++|++. |...+.+..|-|++.|-.++|+
T Consensus 76 A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 76 AHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCC
Confidence 3344444444443 55555555555433 337788889999999999999999975 7766667789999999999999
Q ss_pred HHHHHHHHHHHHHhCccC
Q 022783 268 VKAGLSALEDALLAGYED 285 (292)
Q Consensus 268 ~eeALe~LekAIelG~~D 285 (292)
.+.|-+.|++||++....
T Consensus 155 ~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 155 FDQAEEYLKRALELDPQF 172 (250)
T ss_pred chhHHHHHHHHHHhCcCC
Confidence 999999999999987653
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.85 E-value=0.00016 Score=67.72 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-.+.+|..++..|+|++|+..|.+++...|+......++|++|.||..+|++++|+..|++.|+.-.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45799999999999999999999999999987677889999999999999999999999999988443
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=1e-05 Score=61.48 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=45.6
Q ss_pred HcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 227 k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
..|+|++|+..|+++++.+|.+. ....|+++|-||.++|++++|+..+++ ++.+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence 36899999999999999999532 345799999999999999999999988 54443
No 61
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=97.82 E-value=0.00013 Score=54.13 Aligned_cols=74 Identities=24% Similarity=0.532 Sum_probs=51.4
Q ss_pred EEEecC---CceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchh--hHHHHhhccCCc
Q 022783 88 EVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP 160 (292)
Q Consensus 88 ~v~l~K---PlGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g--~~~~ai~~r~g~ 160 (292)
.+++.| ++|+.+..... .+++|..|.+++.|+++| +++||+|+.+-.. +....- .....++...++
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~------~v~~~~~~~~~~~~~~~~~~ 76 (85)
T smart00228 4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGT------SVEGLTHLEAVDLLKKAGGK 76 (85)
T ss_pred EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCe
Confidence 444444 48888887644 689999999999999999 9999999997642 222221 222333333448
Q ss_pred eEEEEeec
Q 022783 161 LLMKMQKR 168 (292)
Q Consensus 161 v~l~l~r~ 168 (292)
+.|.+.|+
T Consensus 77 ~~l~i~r~ 84 (85)
T smart00228 77 VTLTVLRG 84 (85)
T ss_pred EEEEEEeC
Confidence 88888875
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=6.9e-05 Score=76.74 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=68.2
Q ss_pred hhHHHHHHHhhHHHHHhh--HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHH
Q 022783 195 NRVREIQMQNYMKKKEQK--ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL 272 (292)
Q Consensus 195 ~~l~eiqea~Y~kkk~lk--~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeAL 272 (292)
..+.+|++.+---+..+. .+++-..-+|+.|+-.|+|+.|++||+.||..+|++ + .+|+-++..++.-.+.++||
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~-~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND--Y-LLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch--H-HHHHHhhHHhcCCcccHHHH
Confidence 344555554333333333 334445589999999999999999999999999983 4 57999999999999999999
Q ss_pred HHHHHHHHhCc
Q 022783 273 SALEDALLAGY 283 (292)
Q Consensus 273 e~LekAIelG~ 283 (292)
.+|.+|+++-+
T Consensus 485 sAY~rALqLqP 495 (579)
T KOG1125|consen 485 SAYNRALQLQP 495 (579)
T ss_pred HHHHHHHhcCC
Confidence 99999999953
No 63
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.80 E-value=7.7e-05 Score=56.89 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=50.9
Q ss_pred ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh--ccCCceEEEEeecc
Q 022783 95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKRY 169 (292)
Q Consensus 95 lGl~~~~~~~-G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~r~~ 169 (292)
||+.|....+ ++++|.+|.+++.|+++| |++||+|+++-. . +..+....+..|. .....+.|++.|.-
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing---~---~v~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAING---K---PVNSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETT---E---ESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECC---E---EcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 6899988765 699999999999999999 999999999763 1 2245555566663 33556799999943
No 64
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=1.7e-05 Score=52.22 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH
Q 022783 237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (292)
Q Consensus 237 ~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe 273 (292)
+|++||+++|++ ..+|+|+|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n---~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN---AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC---HHHHHHHHHHHHHCcCHHhhcC
Confidence 489999999985 5689999999999999999973
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.4e-05 Score=76.18 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
.|+|.++.+.++|++||..|++||.++|.+ ...|--+|.||..+|+++.|++++.+|+.+..++
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 499999999999999999999999999984 4468899999999999999999999999998765
No 66
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.76 E-value=5e-05 Score=48.38 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.+|||+|.||..+|++++|+++|++||++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3577777777777777777777777777654
No 67
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9e-05 Score=73.27 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCC----Cccc--------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKP----TPEE--------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP----~~~d--------~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
..|+.||+.|+|..|+..|++|+..=. .+.+ .-.+|.|+|.||.++++|.+|+.+|+++|+++..+-+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 889999999999999999999984211 1101 1357999999999999999999999999999877554
Q ss_pred h
Q 022783 288 V 288 (292)
Q Consensus 288 ~ 288 (292)
.
T Consensus 293 A 293 (397)
T KOG0543|consen 293 A 293 (397)
T ss_pred H
Confidence 4
No 68
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00015 Score=73.29 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------------------cchhHHHHHHHHHHHhcCCH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTP-------------------------------EESSVASYNVACCYSKLNQV 268 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------------------~d~a~a~YN~AccyakLgq~ 268 (292)
-.|-.+.++++-..||+.|..|++++|.+ +..+-+|--++-||.++++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 45778899999999999999999999984 11134577778899999999
Q ss_pred HHHHHHHHHHHHhCc
Q 022783 269 KAGLSALEDALLAGY 283 (292)
Q Consensus 269 eeALe~LekAIelG~ 283 (292)
++|+.|+.+|+..|-
T Consensus 449 ~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999883
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.73 E-value=0.0001 Score=76.44 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=50.7
Q ss_pred hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.|.+...+.+.... ..++|..+.+.|++++|+..|+++++++|++ ..+++++|.+|..+|++++|+..|+++++..
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444444333322 3467777777777777777777777777753 3456777777777777777777777777665
Q ss_pred ccC
Q 022783 283 YED 285 (292)
Q Consensus 283 ~~D 285 (292)
.++
T Consensus 349 P~~ 351 (656)
T PRK15174 349 GVT 351 (656)
T ss_pred ccc
Confidence 543
No 70
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.00018 Score=66.17 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+.+..|..+++.|+|++|++.|++.+...|..+....+.+++|-+|.+++++++|+..+++.|++-++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 445678888888888888888888888888876555566788888888888888888888888887544
No 71
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.1e-05 Score=75.05 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~ 288 (292)
+..+|.|..+|++|+|++|+..|+.|++..--. +.+.||+|.||...+++..|++...+-|+.|.+|++.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 345699999999999999999999999765321 3468999999999999999999999999999988764
No 72
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=97.71 E-value=0.00012 Score=74.19 Aligned_cols=89 Identities=22% Similarity=0.413 Sum_probs=69.6
Q ss_pred ccccceEEEEec---CC-ceeEEee----eCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc-cCcccccccchhhHH
Q 022783 81 EEKYEEYEVEIE---QP-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTM 151 (292)
Q Consensus 81 ~~~~~~~~v~l~---KP-lGl~~~~----~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~-fg~e~w~a~~~g~~~ 151 (292)
-|..+-++|+|. =| |||.+-- ..||||||.+|-+||.-++.|.|.+||.|+.|..+ |++ |= -++-=+|+
T Consensus 245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN-mS-Nd~AVrvL 322 (626)
T KOG3571|consen 245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN-MS-NDQAVRVL 322 (626)
T ss_pred ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhh-cC-chHHHHHH
Confidence 356788888885 35 9998743 36889999999999999999999999999999885 662 22 22222566
Q ss_pred HHhhccCCceEEEEeeccCC
Q 022783 152 YTIRQRVGPLLMKMQKRYGK 171 (292)
Q Consensus 152 ~ai~~r~g~v~l~l~r~~~~ 171 (292)
.-|-++.||+.|+..+++-+
T Consensus 323 REaV~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 323 REAVSRPGPIKLTVAKCWDP 342 (626)
T ss_pred HHHhccCCCeEEEEeeccCC
Confidence 66679999999999887654
No 73
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.9e-05 Score=72.01 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+.|+.+|..++|..||.+|.+||.++|++ ...|-|+|.||.++++++.+..+|.+|+++-
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 477888999999999999999999999984 3458899999999999999999999999874
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.65 E-value=0.0002 Score=71.54 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+..|..+++.|+|++|+..|.+++..+|+. ..+|+.+|.+|..+|++++|+..++++++.+++
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4566777777777777777777777777753 346777777777777777777777777776655
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.00015 Score=60.48 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+.+|..++..|+|++|++.|+++++..|++.-...+++++|.|+..+|++++|+..|+..-..
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc
Confidence 4688999999999999999999999887765445678999999999999999999999774333
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.64 E-value=0.0002 Score=65.35 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-------------------------------chhHHHHHHHHHHHhcC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLN 266 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~-------------------------------d~a~a~YN~AccyakLg 266 (292)
++..|..+.+.|++++|+..|++||+++|++. ....+|..+|.+|..+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 45888999999999999999999999999851 11346889999999999
Q ss_pred CHHHHHHHHHHHHHhCccChhhh
Q 022783 267 QVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 267 q~eeALe~LekAIelG~~Df~~I 289 (292)
++++|+..++++++...+|+..+
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999887764
No 77
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.00029 Score=62.45 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
....+..|..+++.|+|++|++.|++.+..-|+.+-...+++.+|-+|.++|++++|+..+++-|+.-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667999999999999999999999998888876677889999999999999999999999998873
No 78
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.00039 Score=58.13 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=68.2
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhh---HhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQK---ERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk---~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac 260 (292)
.|+.+.....+.+.+++ .|.+....- ... .-.+..|..+...|++++|+..+++++...|+.+....+.+..|.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44445555555555554 555554431 112 234688999999999999999999999877874444567888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCc
Q 022783 261 CYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 261 cyakLgq~eeALe~LekAIelG~ 283 (292)
++..+|+.++|+..+-.++.-.-
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~~~ 106 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAETL 106 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988876433
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.61 E-value=0.00017 Score=71.08 Aligned_cols=102 Identities=20% Similarity=0.157 Sum_probs=75.1
Q ss_pred cccHHH--HHHHhhccccchhhHHHHHH------------HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022783 177 ELSEKE--IIRAERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL 242 (292)
Q Consensus 177 ~~~e~~--~~~a~rN~GvI~~~l~eiqe------------a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekAL 242 (292)
|-||.- +-.-++..|++.+.|++|++ ++|++.|++.+.. ..+....+.++|.+|++.+++.|
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l----es~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL----ESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHH
Confidence 445652 33567899999999999999 6898888887776 66777788899999999999999
Q ss_pred cCCCCc-----------------------------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 243 GSKPTP-----------------------------------EESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 243 eldP~~-----------------------------------~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+.+|.. ++...++..+|-+|..-.+|+.||.++++|.++.
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888872 1113456666666666666666666666666664
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.59 E-value=0.00023 Score=73.88 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=74.7
Q ss_pred HhhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783 186 AERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (292)
Q Consensus 186 a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy 262 (292)
+..+.|.+....++.+++ .|.+...+.+.... ...+|..+.+.|+|++|+..|+++++.+|+. ..+++++|.++
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~---~~~~~~~a~al 362 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT---SKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHH
Confidence 444556666555555554 45555554444333 3589999999999999999999999999973 34567789999
Q ss_pred HhcCCHHHHHHHHHHHHHhCccCh
Q 022783 263 SKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 263 akLgq~eeALe~LekAIelG~~Df 286 (292)
..+|++++|+..|++|++...+++
T Consensus 363 ~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999976643
No 81
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.59 E-value=9.1e-05 Score=47.18 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
.++++|..++.+|+|++|+..|++||+++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4579999999999999999999999999996
No 82
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.58 E-value=0.00024 Score=77.84 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
+..|..+.+.|+|++|+..|+++++++|++ ..+++++|.+|..+|++++|++.|++|+++..++..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 466888899999999999999999999974 457999999999999999999999999998766543
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.58 E-value=0.00052 Score=64.31 Aligned_cols=64 Identities=20% Similarity=0.113 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
..+|..+.+.|++++|+..|+++++.+|+. ..+++++|.+|.++|++++|++.++++++.+..+
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 367777788888888888888888888763 3468888888888888888888888888876543
No 84
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.57 E-value=0.00058 Score=59.11 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=74.4
Q ss_pred cccHHHHHH---HhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783 177 ELSEKEIIR---AERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (292)
Q Consensus 177 ~~~e~~~~~---a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a 252 (292)
+.|+.+.|. .....|+...+...++.- ..+.-..-.. ...+.+|-++|+.++|++|+..|++-|.++|+.++..
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~--qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAE--QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 456666553 344555655555555441 1111010011 1236899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHh
Q 022783 253 VASYNVACCYSKLNQ---------------VKAGLSALEDALLA 281 (292)
Q Consensus 253 ~a~YN~AccyakLgq---------------~eeALe~LekAIel 281 (292)
.++|-+|.++..+.. ...|+.++++-|..
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 899999999999987 88999999988876
No 85
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.57 E-value=0.0003 Score=70.29 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
...+..|..+.+.|++++|++.++++++.+|++ ..+++++|.+|..+|++++|+..++++++..+++
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 344567777777777777777777777777763 3467888888888888888888888888776554
No 86
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.00023 Score=73.82 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783 184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac 260 (292)
|+|.+..|-|.-+....+.+ +|.++....++.-..+ -.|..+.+.|+.++||..|++|+-+||.+ ...-|++|.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHH
Confidence 45555556555555544444 3333333333222222 55555566666666666666666666653 223455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 022783 261 CYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 261 cyakLgq~eeALe~LekAIel 281 (292)
.+..++++++|+..|++--++
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 555555555555555554444
No 87
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.00063 Score=56.89 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.|+.|..+...|+.++|+..|++||+..++......++.++|.+|-.+|++++|+..|+++++.-.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999987766545667899999999999999999999999998643
No 88
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00022 Score=74.00 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-+|.+|.+.++|+.|.-.|++|+++||.+ .++...++..+-.+|+.++||..+++|+.+.+.
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 45555555555555555555555555542 344444555555555555555555555555443
No 89
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0005 Score=63.66 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=70.6
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak 264 (292)
+|..|.+..+....+++ ..-.... +.+.--+.|.|.++.+++.++.||+-..+||+++|.+ -.++--+|-.|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---EKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---HHHHHHHHHHHHh
Confidence 45666666665555543 1111111 1111112399999999999999999999999999974 3467788999999
Q ss_pred cCCHHHHHHHHHHHHHhCccCh
Q 022783 265 LNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 265 Lgq~eeALe~LekAIelG~~Df 286 (292)
+.++++||++|.+.+++.+...
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchH
Confidence 9999999999999999976643
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.48 E-value=0.00045 Score=64.72 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
..+..+.+.|++++|+..++++++.+|+. ..+.+++-+|.+.|++++|+..++++++..
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGA----DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 44455555555555555555555555542 123555555555555555555555555553
No 91
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00019 Score=45.15 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+|+++|.+|..+|++++|++++++|+++-
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 35555555555555555555555555543
No 92
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.47 E-value=0.0004 Score=51.94 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=46.7
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~ 168 (292)
+|+.+.. .+|++.|..|.+++.|+++| |++||+|+.+-. ++..++...+...+ ....+.+.+.|.
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing------~~v~~~~~~l~~~~-~~~~v~l~v~r~ 67 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNG------WRVDALQDRLKEYQ-AGDPVELTVFRD 67 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECC------EEhHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 6888866 46789999999999999999 999999999853 23333333333322 234678888774
No 93
>PLN02789 farnesyltranstransferase
Probab=97.45 E-value=0.00069 Score=65.07 Aligned_cols=110 Identities=15% Similarity=-0.002 Sum_probs=78.8
Q ss_pred CCccccccccHHH-HHHHhhccc-cchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHcCC
Q 022783 170 GKMEQTGELSEKE-IIRAERNSG-VISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSK 245 (292)
Q Consensus 170 ~~~~~~~~~~e~~-~~~a~rN~G-vI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~g-dYeeAIe~fekALeld 245 (292)
-.+...+++.+.= .|++..-.+ .... ....+.+..++.+..+..+ .+|.++.+++ ++++|++.++++|+.+
T Consensus 28 ~~i~y~~~~~~a~~~~ra~l~~~e~ser-----AL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n 102 (320)
T PLN02789 28 VPIAYTPEFREAMDYFRAVYASDERSPR-----ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN 102 (320)
T ss_pred cceeeCHHHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence 3344555666664 355543322 2221 1234545555555555554 8999999998 6899999999999999
Q ss_pred CCccchhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCccChh
Q 022783 246 PTPEESSVASYNVACCYSKLNQV--KAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 246 P~~~d~a~a~YN~AccyakLgq~--eeALe~LekAIelG~~Df~ 287 (292)
|++ ..+|++++.++.++++. +++++.+++||++..++|.
T Consensus 103 pkn---yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 103 PKN---YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred Ccc---hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 984 45799999999999974 7899999999999887764
No 94
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.44 E-value=0.00034 Score=43.95 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
...+.+|..+++.|+|++|++.|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34679999999999999999999999999997
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.00081 Score=62.99 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 216 ~~~~n~G~~L-~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
..+++.|..+ ++.|+|++|+..|++.+...|+......++|-+|-+|..+|++++|+..++++++.-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567888887 678999999999999999999865556789999999999999999999999999873
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0004 Score=71.65 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCc----------------------------cchhHHHHHHHHHHHhcCCHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTP----------------------------EESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~----------------------------~d~a~a~YN~AccyakLgq~eeA 271 (292)
-+|..+|++++|++|+++|+.-++.+-+. .+....+||.||.+...|+|.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 56888999999999999999986544321 12356799999999999999999
Q ss_pred HHHHHHHHHhCccC
Q 022783 272 LSALEDALLAGYED 285 (292)
Q Consensus 272 Le~LekAIelG~~D 285 (292)
++.|++|+.+|.+.
T Consensus 195 ~elL~kA~~~~~e~ 208 (652)
T KOG2376|consen 195 IELLEKALRICREK 208 (652)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998888653
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.38 E-value=0.001 Score=73.11 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
.+.+|..+.+.|+|++|++.|+++++.+|++ ..+++++|.+|..+|++++|++.|+++++...++
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 4578888888888888888888888888864 3468888888888888888888888887765544
No 98
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00025 Score=51.20 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=43.7
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhHHH-HHHHHHHHHHcC-CHHHHHHHHHHHHcCCC
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTG-KYEVAREKFESVLGSKP 246 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~-~~n~G~~L~k~g-dYeeAIe~fekALeldP 246 (292)
+++.|.+.-..++..++ .|.+.....+.... ++++|..+++.| +|++|++.|+++|+++|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555555555555554 55555555554433 459999999999 79999999999999998
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0011 Score=61.86 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=77.0
Q ss_pred cccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783 177 ELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS 255 (292)
Q Consensus 177 ~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~ 255 (292)
+-+|+-..|....+|.+..+=......+-.|+.+..++.+. +.-++..|.+.|+.+.|-+.|++||.++|++ +.++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVL 106 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVL 106 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchh
Confidence 44666667765555555554444444455555554444433 3588899999999999999999999999985 5569
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 256 YNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 256 YN~AccyakLgq~eeALe~LekAIel 281 (292)
+|-+..++.+|++++|...+++|++.
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 100
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.31 E-value=0.0013 Score=49.66 Aligned_cols=66 Identities=24% Similarity=0.477 Sum_probs=49.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccch--hhHHHHhhcc-CCceEEEEeec
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR-VGPLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~--g~~~~ai~~r-~g~v~l~l~r~ 168 (292)
||+.|.. ++++++|..|.+++.|+++| +++||+|+.+-.. +.... ..+...++.. ..++.|.+.|.
T Consensus 4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~------~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGE------PVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCE------EcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 7888876 46789999999999999998 9999999998542 22222 3445566543 34578888886
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.31 E-value=0.00095 Score=70.29 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=70.9
Q ss_pred HHhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
.++++.|....++ ..|.+...+.+.. .-.+.+|..+.+.|++++|+..++++++.+|++ .. |+++|.+|.
T Consensus 57 ~~~~~~g~~~~A~-----~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~ 127 (765)
T PRK10049 57 VAYRNLKQWQNSL-----TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYK 127 (765)
T ss_pred HHHHHcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHH
Confidence 3455555554332 2444444444443 334588899999999999999999999999974 34 899999999
Q ss_pred hcCCHHHHHHHHHHHHHhCccChh
Q 022783 264 KLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~Df~ 287 (292)
.+|++++|+..+++|+++.+++..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999877643
No 102
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.0022 Score=59.08 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=74.0
Q ss_pred cccHHHHH---HHhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783 177 ELSEKEII---RAERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (292)
Q Consensus 177 ~~~e~~~~---~a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a 252 (292)
+.++.+.| ...++.|+...++..++.. ..+.....- ....+.+|..+++.++|++|+..|++.+...|++++..
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a--~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS--QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 34555543 4456678877776666553 111111111 12347999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHh
Q 022783 253 VASYNVACCYSKLNQ------------------VKAGLSALEDALLA 281 (292)
Q Consensus 253 ~a~YN~AccyakLgq------------------~eeALe~LekAIel 281 (292)
.++|.+|.|+..+++ ..+|+..|++-|+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 899999999766541 35788888888876
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.30 E-value=0.0011 Score=61.54 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~-a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+.+...+.+.. .-....|.++++.|++++|+..+++++...|...+. ...|+++|.+|..+|++++|+..+++++..
T Consensus 136 ~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 136 AARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 444444433333 223477888888888888888888888877642222 335778888888888888888888888766
Q ss_pred Cc
Q 022783 282 GY 283 (292)
Q Consensus 282 G~ 283 (292)
..
T Consensus 216 ~~ 217 (355)
T cd05804 216 SA 217 (355)
T ss_pred cc
Confidence 54
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.27 E-value=0.001 Score=61.63 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
...|..+...|+|++|+..|+++++++|++ ..+++++|.+|..+|++++|+..++++++...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 378899999999999999999999999974 45799999999999999999999999998753
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.25 E-value=0.00088 Score=70.52 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
..+|..|....+.++++.|.+.|.....++|++ +.+|+|++|.|.++++..+|...+.+|++-.|+.
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 556788888999999999999999999999974 5579999999999999999999999999988663
No 106
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00024 Score=70.92 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=62.4
Q ss_pred HHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 209 KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 209 k~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+....++++.+.+|+.+|+..+|.+||+.|+.||+++|++ +..|.|+|.||..++++++|+-+..+.+.+-
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k 113 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALGDARQSVRLK 113 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhcccchhhheecC
Confidence 3444556677899999999999999999999999999984 5679999999999999999999999997664
No 107
>PRK15331 chaperone protein SicA; Provisional
Probab=97.14 E-value=0.0018 Score=57.47 Aligned_cols=95 Identities=5% Similarity=-0.044 Sum_probs=63.9
Q ss_pred HhhccccchhhHHHHHHHhhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783 186 AERNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (292)
Q Consensus 186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak 264 (292)
.+++.|.+..+...++-- -.......++ +-+|..+..+++|++|+..|.-|..+++++ .. ..|+.|-||..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L-----~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~-p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFL-----CIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YR-PVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHH-----HHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CC-ccchHHHHHHH
Confidence 345566655544333332 2222222233 477777788899999999999999887763 32 38888999999
Q ss_pred cCCHHHHHHHHHHHHHhCccChhhhh
Q 022783 265 LNQVKAGLSALEDALLAGYEDFKVIY 290 (292)
Q Consensus 265 Lgq~eeALe~LekAIelG~~Df~~Ir 290 (292)
+|+.+.|+.+++-|++. ..+..|+
T Consensus 118 l~~~~~A~~~f~~a~~~--~~~~~l~ 141 (165)
T PRK15331 118 MRKAAKARQCFELVNER--TEDESLR 141 (165)
T ss_pred hCCHHHHHHHHHHHHhC--cchHHHH
Confidence 99999999999999883 3344443
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.13 E-value=0.0044 Score=51.67 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=60.3
Q ss_pred HHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak 264 (292)
+..+..|+..++...++...-.. ........-.+++|.+++.+|+|++|+..++.+ .-++ -...++.-+|-+|..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~---~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEA---FKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc---hHHHHHHHHHHHHHH
Confidence 44556666666555444421110 000001122468999999999999999999762 2212 235678889999999
Q ss_pred cCCHHHHHHHHHHHH
Q 022783 265 LNQVKAGLSALEDAL 279 (292)
Q Consensus 265 Lgq~eeALe~LekAI 279 (292)
+|++++|+..+++||
T Consensus 131 ~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 131 QGDYDEARAAYQKAL 145 (145)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999986
No 109
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.09 E-value=0.0032 Score=64.35 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=56.5
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHcC-----CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 217 QDL-REGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 217 ~~~-n~G~~L~k~gdYeeAIe~fekALel-----dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+. ..|..|...++|.+|+..|++||.+ -++.+..+..+.|+|..|.+.|++++|-.+|++|+++
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 344 5999999999999999999999953 2444456888999999999999999999999999987
No 110
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.09 E-value=0.0014 Score=49.50 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=45.5
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (292)
Q Consensus 104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~ 168 (292)
.++++|.+|.+++.|+++| |+.||+|+.+.. ++..+...+..++... ..++.|++.|.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing------~~i~~~~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNG------KPVKSVADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 4589999999999999999 999999999863 3455555666666654 56788998874
No 111
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.05 E-value=0.002 Score=58.07 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=49.5
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-----------HHHHHHHHH
Q 022783 218 DLREGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-----------VKAGLSALE 276 (292)
Q Consensus 218 ~~n~G~~L~k~----------gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-----------~eeALe~Le 276 (292)
..+=|.+|.++ ..|++||..|++||.++|+ ...++||++.+|+.++. +++|.++++
T Consensus 28 L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 28 LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34667777443 5689999999999999997 46689999999998874 788888888
Q ss_pred HHHHhCcc
Q 022783 277 DALLAGYE 284 (292)
Q Consensus 277 kAIelG~~ 284 (292)
+|.+..+.
T Consensus 105 kAv~~~P~ 112 (186)
T PF06552_consen 105 KAVDEDPN 112 (186)
T ss_dssp HHHHH-TT
T ss_pred HHHhcCCC
Confidence 88877654
No 112
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.02 E-value=0.0052 Score=53.24 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+.++.|...++.|+|++|++.|+....--|-.+-...+..+++-+|.+.+++++|+..+++=|++.+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999999888876666788999999999999999999999999999865
No 113
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.99 E-value=0.00055 Score=69.06 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
..++++.+++.++|+.|+..|.+||+++|+. +..+-|+|..|.+.+++..|+.++.+||++-.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP 69 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDP 69 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCc
Confidence 3478888999999999999999999999974 44588999999999999999999999999863
No 114
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.97 E-value=0.0039 Score=65.76 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
.+.+|..+...|++++|++.++++++++|++ ..+++.+|.++..+|++++|...++++++.-.++-
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRN---INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 3599999999999999999999999999974 34799999999999999999999999999877654
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.97 E-value=0.0028 Score=64.67 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
-.|..+...|++++|...|++|++++|+ ..+|+.+|.+|...|+.++|++.+++|+.+...+
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4566667889999999999999999995 4579999999999999999999999999998663
No 116
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.97 E-value=0.00025 Score=69.27 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+...+..|.+++||+.|..||+++|. .+.+|-++|.+|.++++...|+.+|..||++.++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 34445566677888888888887775 3566777777777777777777777777777765
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0021 Score=65.61 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHhhccccchhhHHHHHHH--hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783 185 RAERNSGVISNRVREIQMQ--NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc 261 (292)
-++.|.|+-.-+-++..++ .|.++..+.+.---++ |++-.|-..|+|++-++--++||+++|+ +..+++-+|.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A 192 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASA 192 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHH
Confidence 5677888877777777776 4555554444422334 9999999999999999999999999995 68899999999
Q ss_pred HHhcCCHHHHHHHHHHH-HHhCccCh
Q 022783 262 YSKLNQVKAGLSALEDA-LLAGYEDF 286 (292)
Q Consensus 262 yakLgq~eeALe~LekA-IelG~~Df 286 (292)
|-.+|++++|+.++.-- |--||.+-
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~ 218 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNA 218 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccc
Confidence 99999999999999866 77777753
No 118
>PRK15331 chaperone protein SicA; Provisional
Probab=96.90 E-value=0.0035 Score=55.58 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
.+..|-.+|..|+|++|...|.-..-++|.+.+ -|..+|+|+-.+++|++|+..+..|..++-+|+.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 347888999999999999999999999998643 4999999999999999999999999988877764
No 119
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0041 Score=63.13 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHhhccccchhhHHHHHHH-hhHHH-HHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783 183 IIRAERNSGVISNRVREIQMQ-NYMKK-KEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (292)
Q Consensus 183 ~~~a~rN~GvI~~~l~eiqea-~Y~kk-k~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A 259 (292)
-|||-+..|..+..+....=+ +|+++ -+.++.+-.. .-+|..|-+.++.++||++|.+|+..... .+.+++.+|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt---e~~~l~~La 473 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT---EGSALVRLA 473 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---chHHHHHHH
Confidence 388999999988877766666 44333 3334433333 49999999999999999999999988765 256899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 022783 260 CCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 260 ccyakLgq~eeALe~LekAIe 280 (292)
-.|-++++.++|...+++-|+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999987
No 120
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.86 E-value=0.0038 Score=47.43 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=45.3
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (292)
Q Consensus 104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~ 168 (292)
..|+.|..|.+++.|+++| |++||+|+++-. ++...+..+..++... ..++.|.+.|.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing------~~v~~~~d~~~~l~~~~~g~~v~l~v~r~ 68 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSING------TPITTLEDFMEALKPTKPGEVITVTVLPS 68 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECC------EEcCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 4579999999999999999 999999999743 4555666667777653 35678888874
No 121
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.0004 Score=69.79 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
++|+.||-+|+|+.||..-+.-|++...+.|. .-+|.|++.||.-+|+++.|+++|++++.
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 88999999999999999999999877665443 35799999999999999999999998743
No 122
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.85 E-value=0.0023 Score=43.54 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac 260 (292)
.+.+|..+...|++++|++.|+++|+.+|++ ..+|+.+|-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence 4578889999999999999999999999974 346777663
No 123
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.83 E-value=0.0036 Score=67.13 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
++.+.+|...|+|.+|+..|.......+.. ....||++|.||..+|.+++|+++++++|.+..++..
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 488889999999999999999999887763 3678999999999999999999999999999877554
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.83 E-value=0.0028 Score=62.68 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+++|..++-.|+|.+|+..|..|++.+|++ ..++|-+|.+|.-+|+-..||.+|++.|++-.+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence 34688999999999999999999999999974 467899999999999999999999999888654
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0062 Score=57.42 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHH
Q 022783 183 IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (292)
Q Consensus 183 ~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Acc 261 (292)
..|++++.|+...++.+++++ -.+.++.-+.+ -+|.+|-+.|++++|-..|.+|+++.|+. ..+..|++..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA-----~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms 177 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKA-----ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMS 177 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHH-----hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHH
Confidence 468888888888777777654 22233332333 78999999999999999999999999974 3468999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCcc
Q 022783 262 YSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 262 yakLgq~eeALe~LekAIelG~~ 284 (292)
|...|+++.|...+..|...+-.
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999877654
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.78 E-value=0.0077 Score=53.42 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=66.3
Q ss_pred HHhhccccchhhHHHHHHH-hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 185 RAERNSGVISNRVREIQMQ-NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea-~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
...++.|+...++..++.- ..+..+..- ....+..|..+|+.|+|++|+..|++-+...|+.+....++|.+|.|+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a--~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYA--PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 4566777777766666552 111111111 1345799999999999999999999999999998777889999999987
Q ss_pred hcC-----------CHHHHHHHHHHHHHhC
Q 022783 264 KLN-----------QVKAGLSALEDALLAG 282 (292)
Q Consensus 264 kLg-----------q~eeALe~LekAIelG 282 (292)
.+. ...+|+..+++-|+.=
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 764 2347888888888763
No 127
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.77 E-value=0.0047 Score=57.95 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=83.8
Q ss_pred ccccHHHHHHHhhccccchhhHHHHHHHhhHH--HHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchh
Q 022783 176 GELSEKEIIRAERNSGVISNRVREIQMQNYMK--KKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (292)
Q Consensus 176 ~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~k--kk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a 252 (292)
+++|..|.-+-+|..||+...+.--..+-|.. ...+.+.-.+.| -+|+=+...|+|+.|++.|+..+++||.+ -
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~ 133 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---N 133 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---h
Confidence 57787777778899999999888777764444 433333334445 78999999999999999999999999985 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.++-|++..+.--|+++-|.+++.+=-.....
T Consensus 134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred HHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 46999999999999999999999876555444
No 128
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.77 E-value=0.0026 Score=40.14 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
+|+++|.+|..+|++++|++++++|+++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 577777777777777777777777777643
No 129
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0057 Score=58.21 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc--------CCCCcc-------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLG--------SKPTPE-------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALe--------ldP~~~-------d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+||.+|++|+|.||..+|..||. ..|..+ ....++-|.|-|+...|+|-+++++|...+..-.+
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 778888888888888888888762 234321 12456778888888888888888888887777555
Q ss_pred C
Q 022783 285 D 285 (292)
Q Consensus 285 D 285 (292)
+
T Consensus 263 n 263 (329)
T KOG0545|consen 263 N 263 (329)
T ss_pred h
Confidence 4
No 130
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.72 E-value=0.0055 Score=45.40 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=44.0
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeec
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~ 168 (292)
.+.|..|.+++.|+++| |++||+|+.+-. ++..++..+.+.+... ...+.+.+.|.
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing------~~i~~~~~~~~~l~~~~~~~~~l~v~r~ 69 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAING------QKIKSWEDLVDAVQENPGKPLTLTVERN 69 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHHCCCceEEEEEEEC
Confidence 58999999999999999 999999999864 3555566666777654 44678888773
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.71 E-value=0.0074 Score=61.77 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=69.7
Q ss_pred hhccccchhhHHHHHHH--hhHHHHHhhHhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCCccc
Q 022783 187 ERNSGVISNRVREIQMQ--NYMKKKEQKERR---------EQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEE 250 (292)
Q Consensus 187 ~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~---------~~~~n~G~~L~k~gdYeeAIe~fekALel-----dP~~~d 250 (292)
+.|.++.+.+...+.++ .+.++..+..+. ....+.+.++..+++|++|+..|.+++++ .+++..
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 45666666666666664 444444444431 12238899999999999999999999953 233324
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 251 SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 251 ~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+..+.|+|-+|.++|++++|.+.+++||..-
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 56779999999999999999999999998763
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.64 E-value=0.01 Score=55.11 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHcC---CCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRT-GKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~-gdYeeAIe~fekALel---dP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+.|..|.+. |++++|++.|++|+++ +.........+-++|.++.++|+|++|++.+++.+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4778877777 8999999999999954 2222344667889999999999999999999998764
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0082 Score=56.63 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-.|..++..|+|.+|+..+.++..++|++ ..+|.-++.||.++|+.++|-..+.+|+++-..
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 48999999999999999999999999984 457999999999999999999999999998543
No 134
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.61 E-value=0.0025 Score=40.20 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
.++.+|..+.++|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3568999999999999999999999999985
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.61 E-value=0.012 Score=58.35 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
..+.-|.+.++|+.|+++..+|.++.|+. ...||.+|-||..+|+++.||..|+-+=
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66777889999999999999999999973 4579999999999999999999998763
No 136
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.60 E-value=0.0041 Score=40.82 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+|.|+|.+|..+|++++|++.+++|+.+-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47888999999999999999999977653
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.47 E-value=0.0031 Score=45.13 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=40.0
Q ss_pred HhhccccchhhHHHHHHHhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783 186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~ 248 (292)
.++..|+...++..++ +.....+.. .-.+.+|.+++..|+|++|+..|+++++++|++
T Consensus 6 ~~~~~g~~~~A~~~~~-----~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFE-----QALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHCTHHHHHHHHHH-----HHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHcCCHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4455555555544443 343333433 345699999999999999999999999999974
No 138
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.43 E-value=0.03 Score=54.55 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+-.|..+...++|++|.+.|+++++.+|++ ..+.-+|.++.++|+.++|..++.+++.+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999973 34677999999999999999999999875
No 139
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.34 E-value=0.014 Score=46.02 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCcc------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 225 LYRTGKYEVAREKFESVLGSKPTPE------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 225 L~k~gdYeeAIe~fekALeldP~~~------d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+.++|.+|++.+.+.++...... ....++.|+|.++..+|++++|+..+++||++--+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999888886543321 23567899999999999999999999999887543
No 140
>PRK11906 transcriptional regulator; Provisional
Probab=96.29 E-value=0.016 Score=58.57 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+..|.++.-.++++.|+..|++|+.++|+ .+.+||..|..+...|+.++|++++++|+.+.+.
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 47788888889999999999999999997 4678999999999999999999999999998653
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.01 Score=61.34 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCC----CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSK----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeld----P~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
-++|+..|+.+.|.+|+.+|.++|+.- +...--...+.|++..|-+++++++||..+++||.+-..|....
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 378888899999999999999998322 22111134699999999999999999999999999987776543
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.0068 Score=44.79 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 250 d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+.+.+|+|+|++|..+|++++|++.+++|+++ .+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~ 36 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EE 36 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Confidence 45678999999999999999999999999987 54
No 143
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.27 E-value=0.013 Score=62.33 Aligned_cols=68 Identities=25% Similarity=0.260 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---------------------------------cchhHHHHHHHHHHH
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------------EESSVASYNVACCYS 263 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---------------------------------~d~a~a~YN~Accya 263 (292)
.++..|..+-..|.++||.+.|..|+.+||+. +....+||++||++-
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 44577888888888888888888888888874 112568999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCcc
Q 022783 264 KLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~ 284 (292)
++|+.++|.+|++-|+++--.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HccchHHHHHHHHHHHhhccC
Confidence 999999999999999988643
No 144
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.27 E-value=0.017 Score=59.25 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
+.++.-+...|+|++|++..++||+..|+. ..+|+-+|-+|.++|++++|.++++.|-++...|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 478888889999999999999999999984 4579999999999999999999999998886554
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.23 E-value=0.027 Score=61.34 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+-.+.+|..|-++|++++|+..|+++|+++|++ ..+..|.|..|+.. ++++|++.+.+|++.-
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 445799999999999999999999999999974 56799999999999 9999999999998873
No 146
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.16 E-value=0.0093 Score=34.16 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
.+++|..++..++|++|+.+|+++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 357788888888888888888888888774
No 147
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.15 E-value=0.01 Score=34.02 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.+|+++|.||..++++++|+.++++++++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3699999999999999999999999998754
No 148
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=96.13 E-value=0.016 Score=55.40 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=47.9
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhcc-CCceEEEEeec
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR-VGPLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r-~g~v~l~l~r~ 168 (292)
+|+.+... ++++.|..|.+++.|+++| |++||+|+++... +..+ +..+...++.. ..++.|++.|.
T Consensus 53 lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 53 IGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGK------SVAGMSLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence 78888763 6799999999999999999 9999999998642 2222 23444555543 33577888775
No 149
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.12 E-value=0.0033 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKP 246 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP 246 (292)
+.++|.++.+.|+|++|+++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 35899999999999999999999775543
No 150
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.11 E-value=0.033 Score=44.12 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
...++.|+.||...+.++||.++.+||+.-++.++.-.++=.++-+|...|+|+++|+..-+=|++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999887777677667778888999999999999876665544
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.09 E-value=0.043 Score=50.99 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CCccchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTPEESSVASYNVACCYSKL-NQVKAGLSALEDALLA 281 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeld---P~~~d~a~a~YN~AccyakL-gq~eeALe~LekAIel 281 (292)
..+..+-..++..++++|+++|++|+++- -++...+.++.++|-.|-.. |++++|++.+++|+++
T Consensus 76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666667779999999999999632 22234577899999999998 9999999999999987
No 152
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0074 Score=60.04 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
=.|--+|.+|+|++|++.|+-+.+.+ |+ +.+|.|+|||+.-+|+|.+|-..-.+|
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45667799999999999999998633 32 567999999999999999998877765
No 153
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.08 E-value=0.015 Score=61.33 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=52.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccc--hhhHHHHhhccCC-ceEEEEeec
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVG-PLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~--~g~~~~ai~~r~g-~v~l~l~r~ 168 (292)
+|+.+.. .+|+++|..|.|||.|++++.|++||+|++|.. =|.++.+..+ +..+...|+...| .|.|++.|.
T Consensus 246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~-~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ-DGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECC-CCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4788866 467899999999999999955999999999972 1233443332 2357778885544 468888874
No 154
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.04 E-value=0.014 Score=61.69 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=62.0
Q ss_pred hhHHHHHhhHhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 204 NYMKKKEQKERREQD--LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~--~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.|-++.++.++...- .-.|...+..++|++|.++++..++++|-. -..||+++||..++++++.|++++..++.+
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---LGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---hhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 444555555544111 244555577899999999999999999962 346999999999999999999999999998
Q ss_pred CccCh
Q 022783 282 GYEDF 286 (292)
Q Consensus 282 G~~Df 286 (292)
-++.+
T Consensus 549 ~Pd~~ 553 (777)
T KOG1128|consen 549 EPDNA 553 (777)
T ss_pred CCCch
Confidence 77643
No 155
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.03 E-value=0.0075 Score=54.99 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
...|..++.+|++++|+..|++++..+|++ ...+.+.|-++...|+.++|+....+|++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT------------------
T ss_pred HHHHHHhccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 378999999999999999999999999974 356889999999999999999999998653
No 156
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.89 E-value=0.03 Score=42.02 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=42.2
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~ 168 (292)
|+.|..|.+++.|+. | |++||+|+.+-. ++...+..+..++.. + ...+.+.+.|.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~~~v~l~v~r~ 65 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDG------KPFKEAEELIDYIQSKKEGDTVKLKVKRE 65 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 699999999998885 7 999999999853 455556667777764 3 34678888874
No 157
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.012 Score=58.05 Aligned_cols=90 Identities=12% Similarity=0.198 Sum_probs=63.7
Q ss_pred chhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783 193 ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 193 I~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA 271 (292)
.+..-.|+..-.|.+....-.+.-+.| |.|+--+-.++|+-++.+|++||..--++++.+..|||++.+..-.|++..|
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 333334444455655555555555554 8888888888999999999998865444446777888888888888888888
Q ss_pred HHHHHHHHHhC
Q 022783 272 LSALEDALLAG 282 (292)
Q Consensus 272 Le~LekAIelG 282 (292)
-.++.-|+-..
T Consensus 415 ~rcfrlaL~~d 425 (478)
T KOG1129|consen 415 KRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhccC
Confidence 88888777554
No 158
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.83 E-value=0.02 Score=36.90 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.++.|+|.+|..+|++++|+..+++|+++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46899999999999999999999999876
No 159
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.83 E-value=0.053 Score=51.18 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
...++++.|+...+.|+|++|++.|++.....|..+....+....+-+|.+.+++++|+..+++=|.+-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3467789999999999999999999999988888666677899999999999999999999999888743
No 160
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.035 Score=52.56 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=78.2
Q ss_pred HHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHH
Q 022783 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accy 262 (292)
.+-.+|.-.+-+++- -....|.++..+.+..-.++ |+++.+++.++|+.+.+--.+||+++|+ ...++|-++.|.
T Consensus 13 lkE~gnk~f~~k~y~-~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYD-DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhc-hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHHHHHHH
Confidence 444455555544432 23348888887777766666 9999999999999999999999999997 467899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCc
Q 022783 263 SKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 263 akLgq~eeALe~LekAIelG~ 283 (292)
.....+++||.+|.+|..++-
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HhhccccHHHHHHHHHHHHHh
Confidence 999999999999999988863
No 161
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.76 E-value=0.072 Score=51.92 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 220 REGLQLYRTGKYEVAREKFE--SVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fe--kALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
..|-.++++|+|++|.+.|+ ++++.+|++ ..+..+|-++.++|+.++|.+.+++++.+
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78999999999999999999 688888974 23558899999999999999999998764
No 162
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.74 E-value=0.047 Score=51.76 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH-HHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS-ALED 277 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe-~Lek 277 (292)
-.++....+|+|++|.+.+++||+.+|++ ..++.|+++|...+|+..++.+ .+.+
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 67888899999999999999999999984 3468999999999999955544 4444
No 163
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.013 Score=63.63 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=56.1
Q ss_pred HhhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 203 a~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
+.|.++....+.. +-+--.|..|...|++.+|+++|.++.+-=-++ ...|-|+|.||..+|+|-.||+.++.+++-
T Consensus 633 q~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~---~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 633 QLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF---EDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC---CceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444433 222367888889999999999999888532221 235999999999999999999999999776
Q ss_pred Cc
Q 022783 282 GY 283 (292)
Q Consensus 282 G~ 283 (292)
=|
T Consensus 710 f~ 711 (1018)
T KOG2002|consen 710 FY 711 (1018)
T ss_pred hc
Confidence 44
No 164
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.69 E-value=0.069 Score=57.64 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-.|..+..+|+|++|++.|+++++.+|++ ..+++-++..|..+++.++|++.+++++..-.+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 45667778888888888888888888874 345667788888888888888888888776544
No 165
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.64 E-value=0.087 Score=56.92 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred hccccchhhHHHHHHH--hhHHHHHhhHhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783 188 RNSGVISNRVREIQMQ--NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (292)
Q Consensus 188 rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~~-~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak 264 (292)
+..|.|..-+..++.+ +...+.-++++..++ +..+...-++|.+++|+-+|++||..+|.+ -...|+++-.|-+
T Consensus 177 ~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 177 YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN---WELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHH
Confidence 3445555444444443 444455555555444 578888888999999999999999999974 3458999999999
Q ss_pred cCCHHHHHHHHHHHHHhCc-cChhhhh
Q 022783 265 LNQVKAGLSALEDALLAGY-EDFKVIY 290 (292)
Q Consensus 265 Lgq~eeALe~LekAIelG~-~Df~~Ir 290 (292)
+|+...|++.+.+.+.+-. .||++|.
T Consensus 254 ~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred hChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 9999999999999977754 5777663
No 166
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=95.63 E-value=0.035 Score=55.27 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=59.2
Q ss_pred ceEEEEecCCc---eeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC-c
Q 022783 85 EEYEVEIEQPY---GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-P 160 (292)
Q Consensus 85 ~~~~v~l~KPl---Gl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~ 160 (292)
..+..++...+ |+.+...+++++.|.++.+++-|+|+| |++||+|+.+- |..+-.. .+..+...||.+.| +
T Consensus 89 ~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id---G~~~~~~-~~~~av~~irG~~Gt~ 163 (406)
T COG0793 89 AEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID---GKSVGGV-SLDEAVKLIRGKPGTK 163 (406)
T ss_pred HHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC---CEEccCC-CHHHHHHHhCCCCCCe
Confidence 34455555544 477777666999999999999999999 99999999988 3222111 22456678887665 5
Q ss_pred eEEEEeeccCC
Q 022783 161 LLMKMQKRYGK 171 (292)
Q Consensus 161 v~l~l~r~~~~ 171 (292)
|.|++.|.-+.
T Consensus 164 V~L~i~r~~~~ 174 (406)
T COG0793 164 VTLTILRAGGG 174 (406)
T ss_pred EEEEEEEcCCC
Confidence 79999998434
No 167
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.63 E-value=0.01 Score=60.59 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
.|.|++.|..|+|++|.+.|.+||..+.. ...++||++..+..+|++++||+++-+-
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 38889999999999999999999987663 4567999999999999999999988663
No 168
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.57 E-value=0.032 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
+|+.+|-+|..+|++++|++.|+++|+..++|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6999999999999999999999999999888754
No 169
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=95.51 E-value=0.023 Score=58.31 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=58.9
Q ss_pred cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (292)
Q Consensus 92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~ 170 (292)
.-|||+++....++.++|+.|..||.++++|.+.+||.|..+-.+- ......-++...++.-.|++++++-=.+.
T Consensus 133 ~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~----v~~~~~~e~q~~l~~~~G~itfkiiP~~~ 207 (542)
T KOG0609|consen 133 GEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGIS----VANKSPEELQELLRNSRGSITFKIIPSYR 207 (542)
T ss_pred CCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCee----cccCCHHHHHHHHHhCCCcEEEEEccccc
Confidence 4589999998777799999999999999999999999999876421 12234556777888767999988744433
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.06 Score=51.03 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
..|=+|..+|.+|+|++|...|..+..-.|+......+++-+|.|...+|+.++|...|++.++.
T Consensus 180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667889999999999999999999888887667788999999999999999999999998876
No 171
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.46 E-value=0.039 Score=54.46 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=49.4
Q ss_pred ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-Cce
Q 022783 95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPL 161 (292)
Q Consensus 95 lGl~~~~~~-----------~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v 161 (292)
||+.+..-. ..|++|.+|.+++.|+++| |++||+|+++-. ++.........++.. .. ..+
T Consensus 236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng------~~i~~~~~~~~~l~~~~~g~~v 308 (428)
T TIGR02037 236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNG------KPISSFADLRRAIGTLKPGKKV 308 (428)
T ss_pred CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEE
Confidence 788876532 3589999999999999999 999999999763 244455555566654 23 357
Q ss_pred EEEEeec
Q 022783 162 LMKMQKR 168 (292)
Q Consensus 162 ~l~l~r~ 168 (292)
.+++.|.
T Consensus 309 ~l~v~R~ 315 (428)
T TIGR02037 309 TLGILRK 315 (428)
T ss_pred EEEEEEC
Confidence 8888774
No 172
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.066 Score=50.74 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
...++-|..+++.|||.+|...|.+-+.--|+..-...++|=++-|+..+|++++|...+..+++- |.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~ 210 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPK 210 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCC
Confidence 347899999999999999999999999999987677889999999999999999999999999884 444
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.43 E-value=0.16 Score=41.80 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
..+..+...|+|++|+....+++.++|.+ -.+|..+-.||..+|+..+|+..+++..
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYD---EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66667889999999999999999999984 2369999999999999999999999874
No 174
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.42 E-value=0.038 Score=54.56 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=45.8
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc--cCCceEEEEeecc
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKRY 169 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~--r~g~v~l~l~r~~ 169 (292)
.|++|.+|.+++.|+++| +++||+|+.+.. ++..+.-+...+|+. ..+.+.|.+.|.-
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing------~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQ------QPVSSVAELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 999999999863 345555556666663 3567899998853
No 175
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.03 Score=59.02 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+|.|-.+|+.++|..+++.|...|..=|.+ .+.+.+.-|++|||.++.|.+.|++.+++|-+...+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 699999999999999999999999655542 233678999999999999999999999999887654
No 176
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=95.37 E-value=0.051 Score=53.44 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=45.6
Q ss_pred ceeEEeeeC--C---CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeec
Q 022783 95 YGLKFAKGR--D---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~--~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~ 168 (292)
+|+.+.... + .++.|..|.+++.|+++| |++||+|+++-.. .+ .......+...++.. ..+|.|++.|.
T Consensus 87 iG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~---~v-~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 87 VGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGT---ST-EGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred EEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 566665432 2 279999999999999999 9999999998642 11 111122344555533 34678888774
No 177
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.34 E-value=0.029 Score=34.64 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
++|++|.||.++|++++|++.+++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677777777777777777777777665
No 178
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.29 E-value=0.02 Score=35.36 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
..++.|..+++.|++++|++.|++.+..-|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3579999999999999999999999998886
No 179
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.26 E-value=0.14 Score=51.66 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=65.1
Q ss_pred HHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh
Q 022783 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak 264 (292)
|.++..|++..++..++.+.-.+..-......-.|+.|..+.-+.+|++|.++|.+-++.+.- ..+..+|-.||||..
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHh
Confidence 455566677766666665321111111111233479999999999999999999999987654 346678999999999
Q ss_pred cCCH-------HHHHHHHHHHHH
Q 022783 265 LNQV-------KAGLSALEDALL 280 (292)
Q Consensus 265 Lgq~-------eeALe~LekAIe 280 (292)
+++. ++|.+.+.++-.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 9999 677777766643
No 180
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.26 E-value=0.072 Score=38.74 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~ 251 (292)
.+..|+.+++.|+|++|....+.+|+++|++...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3578888888899999988888888888886443
No 181
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.23 E-value=0.087 Score=53.67 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
-.+.++.+.+++.+|++.|.+++.++|+ ...+++|.|-.|.+.|++++|+..|++.+....+|
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 5677889999999999999999999997 36789999999999999999999999988776554
No 182
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.22 E-value=0.018 Score=58.92 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=70.4
Q ss_pred hccccchhhHHHHHHH-hhHHH------HHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHH
Q 022783 188 RNSGVISNRVREIQMQ-NYMKK------KEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (292)
Q Consensus 188 rN~GvI~~~l~eiqea-~Y~kk------k~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~A 259 (292)
.|+|+|.-+.+++-.+ .||+- ++.|..+-. +-|.|+.+.+.|+|+.||..|+-.++..|+ -.+-||+-
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn----~~a~~nl~ 316 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN----FIAALNLI 316 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc----HHhhhhhh
Confidence 3778888777777776 33332 222222212 228899999999999999999999999998 35789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC
Q 022783 260 CCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 260 ccyakLgq~eeALe~LekAIelG 282 (292)
.|+.-+|+-++--+++.+-|.+-
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCC
Confidence 99999999999999999988763
No 183
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.1 Score=51.35 Aligned_cols=62 Identities=27% Similarity=0.342 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+-+|......|+|+.|++.++.+++.||+. .+.+.--+..||..+|+.++.+.-|.++++.-
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEY--LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 466888899999999999999999999973 46667788899999999999999999998763
No 184
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=95.17 E-value=0.04 Score=48.98 Aligned_cols=76 Identities=25% Similarity=0.474 Sum_probs=55.3
Q ss_pred EEEEecCC---ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCce
Q 022783 87 YEVEIEQP---YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (292)
Q Consensus 87 ~~v~l~KP---lGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v 161 (292)
-.|+|+|- ||..+--+ -+--|||..|-|||-|++-|.++-||+|+.|..+-= ....-......++.-.|+|
T Consensus 92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsv----ege~hekavellkaa~gsv 167 (207)
T KOG3550|consen 92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV----EGEHHEKAVELLKAAVGSV 167 (207)
T ss_pred ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceee----cchhhHHHHHHHHHhcCcE
Confidence 56888885 55554333 234899999999999999999999999999876311 1122223456788889999
Q ss_pred EEEEe
Q 022783 162 LMKMQ 166 (292)
Q Consensus 162 ~l~l~ 166 (292)
.|++.
T Consensus 168 klvvr 172 (207)
T KOG3550|consen 168 KLVVR 172 (207)
T ss_pred EEEEe
Confidence 98874
No 185
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.16 E-value=0.073 Score=57.48 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
.....+...|++++|+..+++++ +|++.. ..+.-..|.+|..+|++++|++.|+++++...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 44555556677777777777777 343212 2234445667888888888888888888887665
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.12 E-value=0.12 Score=45.44 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=69.1
Q ss_pred ccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCC-ccchhHHHHHHHHHHHhcC
Q 022783 189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPT-PEESSVASYNVACCYSKLN 266 (292)
Q Consensus 189 N~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~-~~d~a~a~YN~AccyakLg 266 (292)
..|.+..+|..+. +...+-+++-+.+ |.+.++.-.|+-++|++-.++||++.-. -.-.-.+|..++..|-++|
T Consensus 55 E~g~Ld~AlE~F~-----qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 55 EAGDLDGALELFG-----QALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred hccchHHHHHHHH-----HHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455555544444 4444555555555 8899999999999999999999987643 2233567999999999999
Q ss_pred CHHHHHHHHHHHHHhCc
Q 022783 267 QVKAGLSALEDALLAGY 283 (292)
Q Consensus 267 q~eeALe~LekAIelG~ 283 (292)
+-+.|-.+++.|-++|=
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999999999993
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.11 E-value=0.055 Score=39.16 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~ 249 (292)
.+.+...+.+.. .-.+..|..+++.|+|++|++.|+++|+.+|+..
T Consensus 17 ~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 17 VLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 333444444444 3345999999999999999999999999999853
No 188
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.14 Score=55.99 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
+++|.+|-.+...|+|++|-..|-+++..+|++ .-..++-++-.|.+.|+++.|+-++++.++.-...++.+
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 455677777777777777777777777776663 223466677777777777777777777766666555543
No 189
>PRK10139 serine endoprotease; Provisional
Probab=94.92 E-value=0.048 Score=54.85 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeecc
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~ 169 (292)
.+++|..|.+++.|+++| +++||+|+.+.. ++...+...+.+|+.+.+++.|.+.|.-
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 489999999999999999 999999999863 3555555566677766688999998854
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.88 E-value=0.058 Score=54.72 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=73.6
Q ss_pred HHhhccccchhhHHHHHHH--hhHHHHHh----hHhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---h
Q 022783 185 RAERNSGVISNRVREIQMQ--NYMKKKEQ----KERR---EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---S 252 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea--~Y~kkk~l----k~~~---~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a 252 (292)
||.-|.|+-.--+.+++.+ +|++.-.+ .+.. -+++-+|++|+-.++|++||+++.+-|.+-..-.|. .
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6667888877777777765 67665333 2222 345899999999999999999999977543321111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
-++|-++..|..+|.-++|+...++++++-
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 579999999999999999999988887654
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.71 E-value=0.067 Score=54.21 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=51.6
Q ss_pred HHHhhccccchhhHHHHHHH--hhHHHHHhhHhHHH----HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783 184 IRAERNSGVISNRVREIQMQ--NYMKKKEQKERREQ----DLREGLQLYRTGKYEVAREKFESVLGSK 245 (292)
Q Consensus 184 ~~a~rN~GvI~~~l~eiqea--~Y~kkk~lk~~~~~----~~n~G~~L~k~gdYeeAIe~fekALeld 245 (292)
..+..|.|.....+++++++ .|.++.++++...+ ++|+|+.|..+|++++|+++|++||++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56778888888888888776 77777777776543 5799999999999999999999999973
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.70 E-value=0.091 Score=37.45 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=34.6
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~ 248 (292)
.|.+.....+.. .-.+..|..+++.|+|++|...+++++..+|++
T Consensus 13 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 13 LLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 454544444444 344699999999999999999999999999984
No 193
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=94.68 E-value=0.078 Score=51.40 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=43.5
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-c-CCceEEEEeec
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r-~g~v~l~l~r~ 168 (292)
.|++|..|.+++.|+++| |++||+|+.+-. ++..+......++.. + .+++.|++.|.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 336 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDG------KDVIGAEELMDRIAETRPGSKVMVTVLRQ 336 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 589999999999999999 999999999753 344455555566653 3 44578888884
No 194
>PRK10898 serine endoprotease; Provisional
Probab=94.64 E-value=0.11 Score=50.55 Aligned_cols=57 Identities=26% Similarity=0.474 Sum_probs=41.9
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeec
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR 168 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~ 168 (292)
.|++|.+|.+++.|+++| |++||+|+.+-. . +.......+.++.. +.| .+.|++.|.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing---~---~V~s~~~l~~~l~~~~~g~~v~l~v~R~ 337 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNN---K---PAISALETMDQVAEIRPGSVIPVVVMRD 337 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECC---E---EcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999999 999999999753 2 33344444555543 343 478888874
No 195
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.55 E-value=0.035 Score=56.39 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 199 eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek 277 (292)
......|.|+..++++.-.++ +++.++.+.++|..|+.-..+||+++|. ...+||-+|.++..++++.+|+.+|++
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 334458888888887665555 8889999999999999999999999996 466899999999999999999999999
Q ss_pred HHHhCccChhhh
Q 022783 278 ALLAGYEDFKVI 289 (292)
Q Consensus 278 AIelG~~Df~~I 289 (292)
...+-..|-...
T Consensus 98 ~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 98 VKKLAPNDPDAT 109 (476)
T ss_pred hhhcCcCcHHHH
Confidence 988877755443
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.52 E-value=0.53 Score=36.37 Aligned_cols=58 Identities=31% Similarity=0.393 Sum_probs=25.6
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 224 ~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.++..+++++|+..|++++..+|........+++.+..+...+++++|+..+.++++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 4445555555555555554444410012223344444444444444444444444443
No 197
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.43 E-value=0.94 Score=39.17 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred hhHHHHHHHhhHHHHHhhHhH--H--------HHH---HHHHHHHHcCCHHHHHHHHHHHH-------cCCCCccch-hH
Q 022783 195 NRVREIQMQNYMKKKEQKERR--E--------QDL---REGLQLYRTGKYEVAREKFESVL-------GSKPTPEES-SV 253 (292)
Q Consensus 195 ~~l~eiqea~Y~kkk~lk~~~--~--------~~~---n~G~~L~k~gdYeeAIe~fekAL-------eldP~~~d~-a~ 253 (292)
.+..+-..++|+++......- + ++| -++-++..+|+|++++..-++|| +++.+.... -.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 344444456888876654332 2 222 45667789999999999999998 566542110 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
+-+|+|..+-.+|..++|+..+..|-+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 458999999999999999999999955
No 198
>PRK10942 serine endoprotease; Provisional
Probab=94.42 E-value=0.076 Score=53.74 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=47.3
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccCC
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~~ 171 (292)
.+++|.+|.+++.|+++| +++||+|+++.. ++...+.....+++....++.|++.|.-..
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg------~~V~s~~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQ------QPVKNIAELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECCEE
Confidence 479999999999999999 999999999863 345555555666666667889999886543
No 199
>PRK10139 serine endoprotease; Provisional
Probab=94.39 E-value=0.095 Score=52.77 Aligned_cols=58 Identities=16% Similarity=0.418 Sum_probs=42.2
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCC-ceEEEEeec
Q 022783 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR 168 (292)
Q Consensus 104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g-~v~l~l~r~ 168 (292)
..|++|.+|.+++.|+++| |++||+|+.+-. . +...+.++...|.. ++| .+.+++.|.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG---~---~V~s~~dl~~~l~~~~~g~~v~l~V~R~ 348 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNG---K---PLNSFAELRSRIATTEPGTKVKLGLLRN 348 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECC---E---ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 4589999999999999999 999999999753 2 33344455555553 333 467777774
No 200
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.33 Score=46.51 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=100.1
Q ss_pred ccccchh-hHHHHhhccCCceEEEEee----ccCCcc-ccccccHHHHHH---HhhccccchhhHHHHHHH--hhHHH--
Q 022783 142 WPAAEYG-RTMYTIRQRVGPLLMKMQK----RYGKME-QTGELSEKEIIR---AERNSGVISNRVREIQMQ--NYMKK-- 208 (292)
Q Consensus 142 w~a~~~g-~~~~ai~~r~g~v~l~l~r----~~~~~~-~~~~~~e~~~~~---a~rN~GvI~~~l~eiqea--~Y~kk-- 208 (292)
....++| .-+..+.+.+.|+.+.++- .+++.. ..=-+|+.|+.+ .++..|+=.-++.++.++ .|+.+
T Consensus 127 ~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~ 206 (329)
T KOG0545|consen 127 FAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAII 206 (329)
T ss_pred HHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence 3344555 3456777888898776642 223332 222567777665 477777777677777765 56555
Q ss_pred ----HHhhHhH--HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783 209 ----KEQKERR--EQD-----------LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 209 ----k~lk~~~--~~~-----------~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA 271 (292)
.+++.++ .++ +|...-+...|+|-++++.-+..|..+|.+ -.|||-+|-+|+.-=+.++|
T Consensus 207 ~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---vKA~frRakAhaa~Wn~~eA 283 (329)
T KOG0545|consen 207 CLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---VKAYFRRAKAHAAVWNEAEA 283 (329)
T ss_pred HHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhhcCHHHH
Confidence 2333333 222 366677788999999999999999999985 45799999999999999999
Q ss_pred HHHHHHHHHhCcc
Q 022783 272 LSALEDALLAGYE 284 (292)
Q Consensus 272 Le~LekAIelG~~ 284 (292)
-.++.+++++...
T Consensus 284 ~~D~~~vL~ldps 296 (329)
T KOG0545|consen 284 KADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHhcChh
Confidence 9999999998754
No 201
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.35 E-value=0.15 Score=52.08 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=49.7
Q ss_pred hhHHHHHhhHhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH-----------------hc
Q 022783 204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS-----------------KL 265 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~-~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accya-----------------kL 265 (292)
.+++...+.+.... .++.|++|.+.|++++||...+..+.-+|++ ...|+.+|-+|. ..
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 44444444444322 3599999999999999999999999999975 233555555555 45
Q ss_pred CCHHHHHHHHHHHH
Q 022783 266 NQVKAGLSALEDAL 279 (292)
Q Consensus 266 gq~eeALe~LekAI 279 (292)
|++++|+..+.+|-
T Consensus 439 G~~~~A~~~l~~A~ 452 (484)
T COG4783 439 GRLEQAIIFLMRAS 452 (484)
T ss_pred CCHHHHHHHHHHHH
Confidence 56666666666663
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.34 E-value=0.14 Score=56.35 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred HhhHHHHHhhHhHHHH-HHHHHHHHHcCC-HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 022783 203 QNYMKKKEQKERREQD-LREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSK---LNQVKAGLSALED 277 (292)
Q Consensus 203 a~Y~kkk~lk~~~~~~-~n~G~~L~k~gd-YeeAIe~fekALeldP~~~d~a~a~YN~Accyak---Lgq~eeALe~Lek 277 (292)
..-++.-++.++.+.+ +.+|+.+...+. .++|-+.|-.|.+++|++ ..||-.++..|.+ ...++++-.+|.+
T Consensus 23 EqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn---lLAWkGL~nLye~~~dIl~ld~~~~~yq~ 99 (1238)
T KOG1127|consen 23 EQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN---LLAWKGLGNLYERYNDILDLDRAAKCYQR 99 (1238)
T ss_pred HHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh---hHHHHHHHHHHHccchhhhhhHhHHHHHH
Confidence 3444444444444443 467777776665 777777777777777752 4566666666665 4455666667766
Q ss_pred HHHh
Q 022783 278 ALLA 281 (292)
Q Consensus 278 AIel 281 (292)
++.+
T Consensus 100 ~~l~ 103 (1238)
T KOG1127|consen 100 AVLI 103 (1238)
T ss_pred HHHh
Confidence 6554
No 203
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=94.33 E-value=0.16 Score=54.14 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=64.2
Q ss_pred ccccccceEEEEecC-C--ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783 79 EQEEKYEEYEVEIEQ-P--YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (292)
Q Consensus 79 ~~~~~~~~~~v~l~K-P--lGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a 153 (292)
.-.++.+-|.|+|+| + .|..+--++.+ ..||-.+.++|-|.+.|.++|||+|+-+.. |--.-..-.+.+..
T Consensus 892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eING----esTkgmtH~rAIel 967 (984)
T KOG3209|consen 892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEING----ESTKGMTHDRAIEL 967 (984)
T ss_pred cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecC----cccCCCcHHHHHHH
Confidence 345677889999986 3 34444444433 899999999999999999999999998653 22222233466778
Q ss_pred hhccCCceEEEEeeccC
Q 022783 154 IRQRVGPLLMKMQKRYG 170 (292)
Q Consensus 154 i~~r~g~v~l~l~r~~~ 170 (292)
|++..--|.|.|.|+.|
T Consensus 968 Ik~gg~~vll~Lr~g~g 984 (984)
T KOG3209|consen 968 IKQGGRRVLLLLRRGTG 984 (984)
T ss_pred HHhCCeEEEEEeccCCC
Confidence 88887778888888654
No 204
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.31 E-value=0.3 Score=47.62 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
..+..+...|+|++|+..+++.++.+|++ ..++.-.+-+|...|+|++|++.+.+..+.+-
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 44667778888888888888888888874 34577778888888888888877777766553
No 205
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.25 E-value=0.069 Score=58.45 Aligned_cols=51 Identities=31% Similarity=0.601 Sum_probs=41.8
Q ss_pred ceEEEEecCCcee----EEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783 85 EEYEVEIEQPYGL----KFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (292)
Q Consensus 85 ~~~~v~l~KPlGl----~~~~~~~---G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa 135 (292)
+-..|+|+|==|| +-+++.. -||||..|++||.|+..|.++.||+|+.|-.
T Consensus 933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG 990 (1629)
T KOG1892|consen 933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDG 990 (1629)
T ss_pred ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecC
Confidence 4688999998663 4455422 2999999999999999999999999998864
No 206
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=94.22 E-value=0.087 Score=55.92 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=62.5
Q ss_pred ecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (292)
Q Consensus 91 l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~ 170 (292)
...|.||+|.++...-|-|..|.|..-|+|+. +++||+|+|+-. .|.....|+-..++.-.|+|....+|..-
T Consensus 384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~------~pi~s~~q~~~~~~s~~~~~~~l~~~~~~ 456 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINN------VPIRSERQATRFLQSTTGDLTVLVERSLD 456 (1051)
T ss_pred ccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecC------ccchhHHHHHHHHHhcccceEEEEeeccc
Confidence 35799999999888899999999999999998 999999999763 57777777778888888999877777443
Q ss_pred C
Q 022783 171 K 171 (292)
Q Consensus 171 ~ 171 (292)
+
T Consensus 457 ~ 457 (1051)
T KOG3532|consen 457 D 457 (1051)
T ss_pred c
Confidence 3
No 207
>PRK10942 serine endoprotease; Provisional
Probab=94.08 E-value=0.15 Score=51.54 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc--CCceEEEEeec
Q 022783 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (292)
Q Consensus 104 ~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r--~g~v~l~l~r~ 168 (292)
..|++|..|.+++.|+++| |+.||+|+.+.. .+...+.....++... ...+.|++.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 369 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNG------KPISSFAALRAQVGTMPVGSKLTLGLLRD 369 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 3599999999999999999 999999999753 2344455555555432 33567777764
No 208
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.92 E-value=0.52 Score=41.56 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
+....++|.-+++-|++++|+++|.++.+..-.....-..+.|+-.+...++++......+++|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455699999999999999999999999887665555667999999999999999999999999
No 209
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.21 Score=47.68 Aligned_cols=65 Identities=28% Similarity=0.279 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-------------------------------chhHHHHHHHHHHHhcCCH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQV 268 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~-------------------------------d~a~a~YN~AccyakLgq~ 268 (292)
-.|+.|--.|+|++|++.|+.-|+-||++. ....+|.-+|-.|..+|++
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 345555555666666666666666666530 0134566666666666666
Q ss_pred HHHHHHHHHHHHhCcc
Q 022783 269 KAGLSALEDALLAGYE 284 (292)
Q Consensus 269 eeALe~LekAIelG~~ 284 (292)
++|.=|+++.+-+.+-
T Consensus 171 ~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPF 186 (289)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6666666666655443
No 210
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=93.84 E-value=0.19 Score=50.22 Aligned_cols=58 Identities=19% Similarity=0.467 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeeccC
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRYG 170 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~~ 170 (292)
++.|.+|.+++.|+++| +++||+|+++.. ++..+..++..+++.+. .++.+.++|.-.
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDG------QPLTQWQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCCEEEEEEEECCE
Confidence 58999999999999999 999999999853 35566666666776554 467888887543
No 211
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.35 Score=49.23 Aligned_cols=67 Identities=10% Similarity=-0.058 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY 290 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir 290 (292)
..+..+..+|+|+++|...+++|...|+ -.+|..+|-++.-.+++++|++.+..|+.+.+.|-..++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD----VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 5566778899999999999999999997 358999999999999999999999999999988765543
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.72 E-value=0.43 Score=47.59 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~ 288 (292)
..+-.+..+...++..+|+...+++|..+|.. +.++.-.|-++...++++.|+..+++|+++-+.+|+.
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~ 270 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET 270 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence 34466777778899999999999999998873 5678889999999999999999999999999988753
No 213
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.98 Score=43.51 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=75.1
Q ss_pred ccccHHHHHHHhhccccchhhHHHHHHH-------hhHHHHHhhHh-HHHH-H-HHHHHHHH----cCCHHHHHHHHHHH
Q 022783 176 GELSEKEIIRAERNSGVISNRVREIQMQ-------NYMKKKEQKER-REQD-L-REGLQLYR----TGKYEVAREKFESV 241 (292)
Q Consensus 176 ~~~~e~~~~~a~rN~GvI~~~l~eiqea-------~Y~kkk~lk~~-~~~~-~-n~G~~L~k----~gdYeeAIe~fekA 241 (292)
++..|+ ++++--.+.++...-.++.- .+.+.-+.-.+ .+++ + .+|..+.+ .+++++|.=+|++-
T Consensus 122 ~~~deA--l~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 122 GDFDEA--LKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred CChHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 445555 66666667776665555551 22221111111 1233 3 57777744 36799999999998
Q ss_pred Hc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 242 LG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 242 Le-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
-+ ..|+ ..+....|||+..+++|++|...|+.|++--+.|.+.+
T Consensus 200 s~k~~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 200 SEKTPPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred hcccCCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 87 7776 56799999999999999999999999999988887654
No 214
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.70 E-value=0.43 Score=46.54 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=52.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+..+...|+|++|+..+++.++..|++ ..+++-.+-+|..+|++++|++.+.+.++.+-.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 4777788999999999999999999974 346888999999999999999999999987643
No 215
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=93.64 E-value=0.064 Score=44.70 Aligned_cols=32 Identities=28% Similarity=0.650 Sum_probs=29.1
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (292)
Q Consensus 103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa 135 (292)
.|-||||+.|.+|+.|+.+| ++.+|+|+-|..
T Consensus 57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG 88 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNG 88 (124)
T ss_pred CCccEEEEEeccCChhhhhc-ceecceEEEecC
Confidence 35599999999999999999 999999999873
No 216
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.59 E-value=0.33 Score=53.08 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc----------------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE----------------ESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~----------------d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
++.+|..+++.+++.+|.-. .++.+-+... +...|++.+|-||.++|+.++|+..++++|++
T Consensus 68 yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 68 LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 35788888888888888777 6665554431 11258999999999999999999999999999
Q ss_pred CccChhhh
Q 022783 282 GYEDFKVI 289 (292)
Q Consensus 282 G~~Df~~I 289 (292)
.++|...+
T Consensus 146 D~~n~~aL 153 (906)
T PRK14720 146 DRDNPEIV 153 (906)
T ss_pred CcccHHHH
Confidence 88765443
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.58 E-value=0.97 Score=34.88 Aligned_cols=65 Identities=31% Similarity=0.316 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+..+..+...+++++|+..+.+++...|.. ....+++++.++...+++++|+..+.++++....
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 3456666778899999999999999988862 3457999999999999999999999999887643
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.51 E-value=0.19 Score=36.50 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
.+|.+|..|.++|+|++|+..++.+++.-+++-+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 5899999999999999999999999999877543
No 219
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.48 E-value=0.17 Score=50.44 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=65.3
Q ss_pred hhHHHHHhhH-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 204 NYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 204 ~Y~kkk~lk~-~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.|.+...+.+ ++--..|++.+|++.++|..|-.-.+.|+.++-. +..+|.-++.+...+|+.++|-++|+.+|++-
T Consensus 119 CYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 119 CYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 5555555444 2223359999999999999999999999999864 56789999999999999999999999999998
Q ss_pred cc
Q 022783 283 YE 284 (292)
Q Consensus 283 ~~ 284 (292)
..
T Consensus 196 P~ 197 (536)
T KOG4648|consen 196 PK 197 (536)
T ss_pred cc
Confidence 76
No 220
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=93.42 E-value=0.068 Score=56.08 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=40.5
Q ss_pred CCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (292)
Q Consensus 93 KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~ 136 (292)
+-.||.|+-++|=||||..|.+|+.|++.| |+.||+|+.|.-+
T Consensus 417 dSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v 459 (1027)
T KOG3580|consen 417 DSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV 459 (1027)
T ss_pred CeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence 578999999999999999999999999999 9999999999865
No 221
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=93.18 E-value=0.29 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=48.9
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cC-CceEEEEeec
Q 022783 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR 168 (292)
Q Consensus 95 lGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~-g~v~l~l~r~ 168 (292)
+|+.-....+ -|+.|..+.+++-|+++| |+.||+|+++-. .+..+..+.+.++.. +. ..+.|+++|.
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING------~~i~~~~~~~~~l~~~~~~~~v~l~V~R~ 249 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNG------LDLRDPEQAFQALQMLREETNLTLTVERD 249 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence 4555543221 289999999999999999 999999999763 345555566666664 34 3689999985
No 222
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.12 E-value=0.042 Score=54.11 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=62.7
Q ss_pred hhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 204 NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.|-..+++........ +++..+.++++...||.-++.||+++|+. +.-|--+...+..+|+|++|-.+|..|.+++
T Consensus 136 ~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 136 LFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 5555555444443332 88999999999999999999999999973 3345567778889999999999999999999
Q ss_pred cc
Q 022783 283 YE 284 (292)
Q Consensus 283 ~~ 284 (292)
|+
T Consensus 213 ~d 214 (377)
T KOG1308|consen 213 YD 214 (377)
T ss_pred cc
Confidence 98
No 223
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.08 E-value=0.21 Score=52.68 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA 271 (292)
-.|+.+...++|++||+||..||.++|+| ..+|+.+|...+.|++++..
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDN---LQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhhhhH
Confidence 44555555666666666666666666654 22344444444444444333
No 224
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.03 E-value=0.15 Score=52.66 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=36.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~ 136 (292)
||+++.+ +.|+..|..|.++|.|.++| |.+||+|+++-..
T Consensus 453 LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 453 LGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 7888877 57899999999999999999 9999999998764
No 225
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=92.88 E-value=0.2 Score=49.74 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC-CceEEEEeeccC
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRYG 170 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~-g~v~l~l~r~~~ 170 (292)
-++.|.+|.+++.|+++| +++||+|+++.. .+..++.++..+++... .++.++++|.-.
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSING------EKLRSWTDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCceEEEEEECCE
Confidence 378999999999999999 999999999863 24455666666776543 457888888543
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.88 E-value=0.27 Score=44.56 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=46.9
Q ss_pred hccccchhhHHHHHHHhhHHHHHhhHhHHHH-HHHHHHHHHcCC-----------HHHHHHHHHHHHcCCCCccchhHHH
Q 022783 188 RNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK-----------YEVAREKFESVLGSKPTPEESSVAS 255 (292)
Q Consensus 188 rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~-~n~G~~L~k~gd-----------YeeAIe~fekALeldP~~~d~a~a~ 255 (292)
|..|.-...+.+.....|.++..+++...++ ++.|++|...+. |++|.++|++|...+|++ -.
T Consensus 41 fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-----e~ 115 (186)
T PF06552_consen 41 FKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-----EL 115 (186)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT------HH
T ss_pred ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-----HH
Confidence 4444434444444556888888888887554 699999965443 899999999999999984 36
Q ss_pred HHHHHHHH
Q 022783 256 YNVACCYS 263 (292)
Q Consensus 256 YN~Accya 263 (292)
|++++-.+
T Consensus 116 Y~ksLe~~ 123 (186)
T PF06552_consen 116 YRKSLEMA 123 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 227
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.86 E-value=0.59 Score=49.40 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
==+|+.|..+|+-++|.++-..++..++. ..+.|.=.|..+-.-.+|++||.|+..|++++-++.+-+
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 36799999999999999999999999986 368899999999999999999999999999997765433
No 228
>PRK10941 hypothetical protein; Provisional
Probab=92.82 E-value=0.54 Score=44.55 Aligned_cols=64 Identities=20% Similarity=0.138 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
|+=..+.++++|+.|+.+-+..|.++|+. ..-+--+|.+|.++|.+..|+.+|+.-|+.=.+|-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 56667889999999999999999999984 23477899999999999999999999998877653
No 229
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.93 Score=43.43 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCccChh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL---NQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL---gq~eeALe~LekAIelG~~Df~ 287 (292)
-+.+++.+|+.+|+|++|+=||++.+=++|.++ ..+--.|-++.-+ .+++-|.+.+.+|+++..+++.
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 345899999999999999999999999999852 2233344444444 4788999999999999876543
No 230
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.70 E-value=0.34 Score=45.97 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=49.6
Q ss_pred HHHHHH--HHc--CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 220 REGLQL--YRT--GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 220 n~G~~L--~k~--gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
+.+..+ +.. +.|++|.-.|++..+..|. ...+++.+|+|+..+|+|++|.+.|++|++....|...+
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 555544 333 3699999999997665443 356789999999999999999999999998876665543
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.7 Score=44.47 Aligned_cols=70 Identities=16% Similarity=-0.077 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch----------------------------------hHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----------------------------------SVASYNVACC 261 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~----------------------------------a~a~YN~Acc 261 (292)
+.+.-+|-+|...|++..|+..|.+|+.+.|++.++ -.+.+.+|..
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 445566666666666666666666666666654222 2356777778
Q ss_pred HHhcCCHHHHHHHHHHHHHhCccC
Q 022783 262 YSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 262 yakLgq~eeALe~LekAIelG~~D 285 (292)
+...|+|.+|+...+.=++....|
T Consensus 237 afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcCCCC
Confidence 888888888888877777776553
No 232
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.48 E-value=1.2 Score=44.08 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=30.9
Q ss_pred ccccHHHHHHHhhcccc--chhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 176 GELSEKEIIRAERNSGV--ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 176 ~~~~e~~~~~a~rN~Gv--I~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
.++|-.++..|++-.|. ...+|.+=.|..|..-......+..++ .+-++|.+..+|++||+.-++-..+.|.
T Consensus 99 pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 99 PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 35566665555554433 222333333333333333233333333 3334444445555555555544444443
No 233
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.47 E-value=0.74 Score=47.43 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=51.1
Q ss_pred ccHHHHHH--HhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHH
Q 022783 178 LSEKEIIR--AERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS 255 (292)
Q Consensus 178 ~~e~~~~~--a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~ 255 (292)
-||--.|+ .+...|....+|.+.... .+.++.+ ....-.+|..|.++|++++|...|..-|..||++. ..|
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~---~~~I~Dk-~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~---~Yy 75 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKN---EKQILDK-LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY---DYY 75 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhh---hhhCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHH
Confidence 35555554 456777777777776431 1111111 11223889999999999999999999999999752 336
Q ss_pred HHHHHHH
Q 022783 256 YNVACCY 262 (292)
Q Consensus 256 YN~Accy 262 (292)
..+.+|.
T Consensus 76 ~~L~~~~ 82 (517)
T PF12569_consen 76 RGLEEAL 82 (517)
T ss_pred HHHHHHH
Confidence 6666666
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.42 E-value=0.37 Score=48.61 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
...+..|..+...|+.++||+.|++++..+..-.. ....+|.++.||..+.+|++|.+++.+-++.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 44569999999999999999999999965543222 2568999999999999999999999988765
No 235
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.36 E-value=1.2 Score=49.63 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH--cCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekAL--eldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+...|.+.|++++|++.|++.. .+.|+ ...|..+-.+|.+.|++++|+..+.+.++.|+.
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPN----TITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 34444556666666666666654 34454 234555666666666677777666666666654
No 236
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.25 E-value=0.21 Score=31.95 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSK 245 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeld 245 (292)
+-++|..|...|+|++|+..+++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4589999999999999999999999653
No 237
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.02 E-value=1.3 Score=49.26 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+...|.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++..+.|+.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPT----VSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 566677889999999999998864 5665 356888999999999999999999998888864
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.00 E-value=1.2 Score=47.13 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~-----~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+.|..++..|++++|...+++++++-... .....++.++|.++...|++++|...+.+|+++
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 367778888888888888888888642110 011334667777888888888888888888765
No 239
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.84 Score=45.20 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=68.3
Q ss_pred HhhccccchhhHHHHHHHhhHHHHHhhHhH-----HH--HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHH
Q 022783 186 AERNSGVISNRVREIQMQNYMKKKEQKERR-----EQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV 258 (292)
Q Consensus 186 a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~-----~~--~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~ 258 (292)
..+..|+-+-+-+.++.+.+...+-++.+. .. +.|++-..+..|+|..||+--.+|+.++|+. ..++|--
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---~Ka~~R~ 159 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH---LKAYIRG 159 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---hhhhhhh
Confidence 334455555555555555222222233222 11 2388888899999999999999999999974 6789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 259 ACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 259 AccyakLgq~eeALe~LekAIelG 282 (292)
|-|+..++.+.+|+..|+..+.+-
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999887663
No 240
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.64 E-value=0.5 Score=44.71 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.|++|+.|-..|-+.-|---|+++|.++|+. +.+++.++..+..-|+++.|.++++-.+++...
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 4799999999999999999999999999973 456899999999999999999999999998765
No 241
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.55 E-value=0.31 Score=46.25 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 224 ~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
.+.+.+|++.|.+.|++||++-|+ -..-|+-.+-..-+-|+++.|...+++.+++..+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999996 356799999999999999999999999999988875
No 242
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.41 E-value=1.5 Score=37.90 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc--ch-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ES-------SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~--d~-------a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
|-++-.|..-.+.|-|++|...+.+|+++.-+.+ +. +..|--++-++..+|+|+++|..-++||-.
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4455777778899999999999999996432210 11 567778889999999999999999999753
No 243
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=0.39 Score=46.49 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
+.+..+.-.++|.+|...|++.++.||.+ ..+-+|+|.|...+|+..+|++.++.+++.-+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 77788888999999999999999999974 456899999999999999999999999887554
No 244
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.78 E-value=1.6 Score=38.20 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 215 REQDLREGLQLYRT---GKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 215 ~~~~~n~G~~L~k~---gdYeeAIe~fekALe-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
....|+.+-.|... .+.++.|.+++..+. -.|. +.....|.+|..|+++++|++|+..++.-++.-.++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 34567888888554 667889999999997 4444 455678999999999999999999999998886543
No 245
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.51 E-value=0.25 Score=32.18 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=24.7
Q ss_pred hHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHH
Q 022783 205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVARE 236 (292)
Q Consensus 205 Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe 236 (292)
|.++.++.+.. ..++++|..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 55666666655 445699999999999999973
No 246
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=0.78 Score=46.13 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
++.+-++-..|..-.|++||+.|.++|..+|+ +-.+-.|+|.||+++.-++-+-+.+.-=+
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e---y~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE---YIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh---hhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 33456677778888999999999999999996 44567899999999999988877775443
No 247
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=90.39 E-value=0.37 Score=47.94 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEee
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r 167 (292)
-+++|.+|.|++.|+++| +++||+|+.+-.. +..+.......|....+++.+.+.|
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~------~v~~~~dl~~~ia~~~~~v~~~I~r 183 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGN------KIPGFKDVRQQIADIAGEPMVEILA 183 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhcccceEEEEE
Confidence 478899999999999999 9999999997642 2223333333344333777777776
No 248
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.33 E-value=1.2 Score=44.35 Aligned_cols=79 Identities=16% Similarity=-0.019 Sum_probs=53.4
Q ss_pred HHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 208 kk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
..++++..+.++-++..|....+-+.|+..|.++|+.-|. +. ....-+|.+|-.|+++++|++.++.++++...+-+
T Consensus 249 sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~--~V-T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF--DV-TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc--hh-hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 3334444455566666676777777777777777766665 22 34677888888888888888888888887655444
Q ss_pred hh
Q 022783 288 VI 289 (292)
Q Consensus 288 ~I 289 (292)
.|
T Consensus 326 ai 327 (478)
T KOG1129|consen 326 AI 327 (478)
T ss_pred ee
Confidence 43
No 249
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.19 E-value=1.3 Score=46.02 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.....|.+.|++++|++.|++..+ +.|+ ...|..+-.+|+++|++++|...+.+.++.|+.
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 566777888999999999998874 5665 346888888889999999999999999988865
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.11 E-value=0.32 Score=48.81 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 252 SVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 252 a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
..++|.+|..|-++|..-.|.++|++|.++-
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4578888889999999999999999886654
No 251
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=89.97 E-value=0.36 Score=48.27 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=40.1
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-C-CceEEEEeec
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-V-GPLLMKMQKR 168 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~-g~v~l~l~r~ 168 (292)
..+|.+|.|++-|+++| +++||+|+.+-.. +.++..+....+..+ + ..+.+++.|.
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~------~V~~~~~l~~~v~~~~~g~~v~v~v~R~ 184 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGI------ETPDWDAVRLALVSKIGDESTTITVAPF 184 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence 45799999999999999 9999999997642 444555444444433 2 2477777774
No 252
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.94 E-value=0.5 Score=48.49 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=49.7
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHH
Q 022783 204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe 273 (292)
.+.++..+......++.+|..+...|++++|++.|++|+.++|..+.. ..+-| ..+|+.+..+.-++.
T Consensus 442 ~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~-~~~~~-~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 442 AINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL-YWIEN-LVFQTSVETVVPYLY 509 (517)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH-HHHHh-ccccccHHHHHHHHH
Confidence 555556666555556688999999999999999999999999986433 33334 567777776665543
No 253
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.69 Score=44.27 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=44.1
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh-ccCC-ceEEEEeeccCC
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK 171 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~-~r~g-~v~l~l~r~~~~ 171 (292)
|++|..|.+++.|+++| ++.||+|+++.. +++......+..+. .++| .+.+++.|. |+
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng------~~v~~~~~l~~~v~~~~~g~~v~~~~~r~-g~ 330 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNG------KPVASLSDLVAAVASNRPGDEVALKLLRG-GK 330 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECC------EEccCHHHHHHHHhccCCCCEEEEEEEEC-CE
Confidence 49999999999999999 999999999874 34444544445544 3345 678999998 54
No 254
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=89.87 E-value=0.88 Score=43.96 Aligned_cols=71 Identities=27% Similarity=0.545 Sum_probs=51.6
Q ss_pred ecCCceeEEeeeC------CC-----CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCC
Q 022783 91 IEQPYGLKFAKGR------DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (292)
Q Consensus 91 l~KPlGl~~~~~~------~G-----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g 159 (292)
-+||||.-+-.+. .| ||||..++|||=|+.+|.+.|-|.|+-|..+ | +--..+.||-.++-..+-
T Consensus 169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGI---E-VaGKTLDQVTDMMvANsh 244 (358)
T KOG3606|consen 169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI---E-VAGKTLDQVTDMMVANSH 244 (358)
T ss_pred CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCE---E-eccccHHHHHHHHhhccc
Confidence 3799997775441 23 9999999999999999999999999998742 1 123456676666655555
Q ss_pred ceEEEE
Q 022783 160 PLLMKM 165 (292)
Q Consensus 160 ~v~l~l 165 (292)
.+-+++
T Consensus 245 NLIiTV 250 (358)
T KOG3606|consen 245 NLIITV 250 (358)
T ss_pred ceEEEe
Confidence 555544
No 255
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.70 E-value=2.5 Score=38.82 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=56.1
Q ss_pred HhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 203 a~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
..|++.+......+=.++.|..+++.|+|++|++.|+.++..--.. .-...+.-.+.-|+.++|+.+..+..+-+-+
T Consensus 166 ~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 166 EQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4666555544444555799999999999999999999997432110 1124567788999999999999998876543
No 256
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.47 E-value=0.23 Score=52.95 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=39.4
Q ss_pred EEEEecC-----CceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783 87 YEVEIEQ-----PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (292)
Q Consensus 87 ~~v~l~K-----PlGl~~~~~-~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa 135 (292)
-+|.|.| ||-+.|--+ ..| ||||++|.||..|+..| ++-||+++-|..
T Consensus 537 RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNg 591 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNG 591 (1283)
T ss_pred eeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccc
Confidence 4566666 677777665 556 99999999999999999 999999998764
No 257
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=89.37 E-value=3.2 Score=44.80 Aligned_cols=78 Identities=26% Similarity=0.503 Sum_probs=57.9
Q ss_pred ceEEEEe-cCCceeEEee-eCC--C-CeEEEEeCCCCCcccccCcccCCEEEEeccc--cCcccccccchhhHHHHhh--
Q 022783 85 EEYEVEI-EQPYGLKFAK-GRD--G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV--FGTEIWPAAEYGRTMYTIR-- 155 (292)
Q Consensus 85 ~~~~v~l-~KPlGl~~~~-~~~--G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~--fg~e~w~a~~~g~~~~ai~-- 155 (292)
.+..|.| .||.|.-|-- +.| | -|||-.|++.|.|++.|.++.||.|+.+-.. -| ..--.|+..+.
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~G------ksH~~vv~Lm~~A 722 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEG------KSHSEVVDLMEAA 722 (984)
T ss_pred cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccC------ccHHHHHHHHHHH
Confidence 5677766 5788876643 222 2 8999999999999999999999999998752 22 12224555444
Q ss_pred ccCCceEEEEeec
Q 022783 156 QRVGPLLMKMQKR 168 (292)
Q Consensus 156 ~r~g~v~l~l~r~ 168 (292)
.|+|.|.|++.|.
T Consensus 723 ArnghV~LtVRRk 735 (984)
T KOG3209|consen 723 ARNGHVNLTVRRK 735 (984)
T ss_pred HhcCceEEEEeee
Confidence 7899999999885
No 258
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=1.8 Score=45.47 Aligned_cols=70 Identities=24% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------CCc-----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSK-------PTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeld-------P~~-----~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
+.+||.+.++...|+|.+|++..++|+.++ -.+ .+...+.--+|.++-.+|+-++|...+...|....
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 345899999999999999999999994322 111 12356788999999999999999999999998876
Q ss_pred cC
Q 022783 284 ED 285 (292)
Q Consensus 284 ~D 285 (292)
.|
T Consensus 256 ~D 257 (652)
T KOG2376|consen 256 AD 257 (652)
T ss_pred CC
Confidence 54
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.98 E-value=1.4 Score=45.67 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek 277 (292)
.+|+.+-+.|+.+|||+.|...+...|.. +...++||+--|+..++.|.++-..|.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 78999999999999999999999887753 3445899999999999999988777665
No 260
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=88.76 E-value=2.9 Score=44.83 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=66.7
Q ss_pred ccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC
Q 022783 189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (292)
Q Consensus 189 N~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq 267 (292)
+.|++.....-++.++-+ ....++.+ ..--..++..+|+.|-..|.+|-...|+. -+|+--+.+.--+++
T Consensus 596 ~agdv~~ar~il~~af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----Rv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----RVWMKSANLERYLDN 666 (913)
T ss_pred hcCCcHHHHHHHHHHHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----hhhHHHhHHHHHhhh
Confidence 447877777666665321 11122322 33334488899999999999999998872 368888888888999
Q ss_pred HHHHHHHHHHHHHhCccChhhh
Q 022783 268 VKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 268 ~eeALe~LekAIelG~~Df~~I 289 (292)
.++|+..|++||+. |.||.++
T Consensus 667 ~eeA~rllEe~lk~-fp~f~Kl 687 (913)
T KOG0495|consen 667 VEEALRLLEEALKS-FPDFHKL 687 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHH
Confidence 99999999999998 8888764
No 261
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.67 E-value=2.9 Score=38.16 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 226 YRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 226 ~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+..=+..|++.|++|++.+..+ .+...+.|-+|-.+.++|++++|+..+.+.|..+-.
T Consensus 136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 33344778999999999665431 233568999999999999999999999999887644
No 262
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=88.34 E-value=1.5 Score=45.65 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
...+...|+++.|...+++.++++|++ . ..|.-+.-+|++.|++++|.+.+++-.+.|..
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~~--~-~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEK--L-NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCCC--C-cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 334456777777888888888888863 2 24666777888888888888888888888753
No 263
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=88.08 E-value=1.9 Score=47.93 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCccC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VKAGLSALEDALLAGYED 285 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-~eeALe~LekAIelG~~D 285 (292)
++..+......++|++||+.-.++|+.||++ ..+|.-++.++..+++ .++|-+++-.|.++-+++
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn 70 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN 70 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh
Confidence 4456667778999999999999999999984 5689999999999999 999999999999997663
No 264
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.98 E-value=0.85 Score=35.65 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 214 RREQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
.+..+..+|+.+-+.|+|++||.+|++|++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344556889999999999999999999885
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.93 E-value=2 Score=45.36 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d--~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
..|..++..|+|++|...++++++..|.... ...++.+++.++..+|++++|+..+++|++.
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567778889999999999999875454211 2356788888888889999998888888765
No 266
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=87.55 E-value=0.32 Score=51.46 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=44.0
Q ss_pred cccccceEEEEecC----CceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783 80 QEEKYEEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (292)
Q Consensus 80 ~~~~~~~~~v~l~K----PlGl~~~~~~~G----~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa 135 (292)
|...-+.-+|-|+| +||+++-|+.=| -|+|+-.-.+|.|+++|.+.+||+|+++..
T Consensus 640 FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING 703 (829)
T KOG3605|consen 640 FAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSING 703 (829)
T ss_pred hhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecC
Confidence 33333444566665 899999887555 678889999999999999999999999874
No 267
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.40 E-value=2.7 Score=42.18 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
..+|..+++.+.|.+|-+.|+.||...|. ...|.-+|.+|..+|+.++|-+..++|+-
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPS----ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 48899999999999999999999999997 23477789999999999999999999973
No 268
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.71 E-value=1.4 Score=34.85 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
+..|..+...|+|++|++.+-..+..+++
T Consensus 26 ~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 26 YALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 44444445555555555555555544444
No 269
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=86.60 E-value=1.2 Score=47.16 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.3
Q ss_pred cCCceeEEeeeCC--------C-CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceE
Q 022783 92 EQPYGLKFAKGRD--------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (292)
Q Consensus 92 ~KPlGl~~~~~~~--------G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~ 162 (292)
++|.++.|-..++ | .|||.+|...|=|++.|.|+.||+|+.+..+.-. -..+-.+...|...-|.+.
T Consensus 197 ~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvte----NmSLtDar~LIEkS~GKL~ 272 (1027)
T KOG3580|consen 197 PGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTE----NMSLTDARKLIEKSRGKLQ 272 (1027)
T ss_pred CCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeec----cccchhHHHHHHhccCceE
Confidence 5678887766543 2 7999999999999999999999999998765443 3355567788998999999
Q ss_pred EEEeeccCCc
Q 022783 163 MKMQKRYGKM 172 (292)
Q Consensus 163 l~l~r~~~~~ 172 (292)
|++.|--+.+
T Consensus 273 lvVlRD~~qt 282 (1027)
T KOG3580|consen 273 LVVLRDSQQT 282 (1027)
T ss_pred EEEEecCCce
Confidence 9999977763
No 270
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.47 E-value=1.4 Score=34.40 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 213 ERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 213 ~~~~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
.++-++..+|+.+-+.|+|++|+.+|..||+
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445566889999999999999999999985
No 271
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.07 E-value=1.6 Score=32.35 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
...++.|+..-+.|+|++|+++|.+|++
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556889999999999999999999884
No 272
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=1 Score=41.88 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=27.5
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (292)
Q Consensus 105 G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~ 136 (292)
.-++|.+|+|++-|+++| +++||.|+....+
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV 169 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNV 169 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEeccc
Confidence 368899999999999999 9999999996554
No 273
>PLN03077 Protein ECB2; Provisional
Probab=86.00 E-value=4.7 Score=42.99 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcc
Q 022783 220 REGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL-LAGYE 284 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAI-elG~~ 284 (292)
.....|.+.|++++|++.|++.++ +.|+ ...|..+-.++++.|++++|+..+++.. +.|..
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 556667788999999999998775 5565 2345555566778888999988888887 55543
No 274
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=1.9 Score=44.03 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+..+|--|..+|..++|+.|+..-+++|..+|++ ..++--++..+..+++.++|+.++..|+.+-
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 4556667777788888888888888888888874 2356677777888888888888888887776
No 275
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.71 E-value=4.3 Score=30.46 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
...+..|+.+-+.|+|++|+.+|.+|++
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455788888889999999999988874
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.35 E-value=2.7 Score=38.72 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+++|..++..|.|++|++..+..-+-.= .+..--=++-.+..+|+-++|...+++|++.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4777777778888887776554322110 12223446778888888888888888888775
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.23 E-value=7.4 Score=35.95 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-.+..+-.+++.+++++|+.....+|..-.+..-...+-.++|.+...+|++++|+..|+.-.+-+|.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 45688888999999999999999999764432123667889999999999999999999887766654
No 278
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.18 E-value=4.9 Score=43.45 Aligned_cols=69 Identities=17% Similarity=0.057 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
...|..++.|...++.+.|++.-.++|++++. +...+|.-+|.|++-.+++.+|+...+.|++-=.++|
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 34468888888888888888888888888776 4456788888888888888888888888877644444
No 279
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.08 E-value=2 Score=43.96 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-----------ccch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPT-----------PEES----SVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~-----------~~d~----a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
++.+|-..|++++|..|+-.|..||+++.+ .+|+ +.+---+..||.++++.+.||.+.-+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 457888889999999999999999876543 2233 4556778999999999999999999999998
Q ss_pred ccCh
Q 022783 283 YEDF 286 (292)
Q Consensus 283 ~~Df 286 (292)
+..|
T Consensus 259 P~~f 262 (569)
T PF15015_consen 259 PSYF 262 (569)
T ss_pred cchh
Confidence 7654
No 280
>PLN03077 Protein ECB2; Provisional
Probab=83.75 E-value=3.4 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=48.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 223 ~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..|.+.|++++|...|++. .|+ ...|..+..+|.+.|+.++|++.+++.++.|..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~---~~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH---EKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc---CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5567889999999999986 554 357999999999999999999999999998865
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.32 E-value=4.8 Score=39.17 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek 277 (292)
+..+.++..+.+.|++.+|...|..++...|++ +.+..-+|.||...|+.+.|...|..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455688999999999999999999999999985 34567789999999999999887765
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.77 E-value=4.9 Score=38.16 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL 265 (292)
.+..+-++|+.++|++|+...++-|.+.|+.++...++|=++.++...
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 458899999999999999999999999999888888999999997653
No 283
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.74 E-value=1.9 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 022783 254 ASYNVACCYSKLNQVKAGLSALE 276 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~Le 276 (292)
+++++|-.|..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56777777888888877777665
No 284
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.61 E-value=6.2 Score=42.06 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=82.2
Q ss_pred cccccccchh-hHHHHhhccCCceEEEEeeccCCccccccccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHH
Q 022783 139 TEIWPAAEYG-RTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ 217 (292)
Q Consensus 139 ~e~w~a~~~g-~~~~ai~~r~g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~ 217 (292)
+.+.|....| ++.-+|+--+||.-+.|--.-==|+..|.-+-+ +.=.+-+...+ ...+.-.
T Consensus 583 ~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a---------------~~cl~~a~~~~---p~~~~v~ 644 (886)
T KOG4507|consen 583 NYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFA---------------IACLQRALNLA---PLQQDVP 644 (886)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHH---------------HHHHHHHhccC---hhhhccc
Confidence 4555666666 566677777888777664322222332322222 11111111110 0111223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+++++.+.+-+...+|-....++|.++-. ....+|-.+..|..+.+++.||+++.+|+++...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 469999999999999999999999988743 2356999999999999999999999999998754
No 285
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=82.25 E-value=6.4 Score=36.72 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALe-ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
+.+|+++.+.|+|.||...|+++|. +=-. |. ...-.+|-....+++..+|...|++-.+.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~--d~-a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAH--DA-AMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCC--CH-HHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 4667777777777777777777762 1111 11 23444555555555555555555554444
No 286
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=82.14 E-value=2.4 Score=42.59 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=40.7
Q ss_pred CCceeEEeeeCCCCeEEEEeCC--------CCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhc-cCCceEE
Q 022783 93 QPYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGPLLM 163 (292)
Q Consensus 93 KPlGl~~~~~~~G~v~V~~v~~--------ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~-r~g~v~l 163 (292)
.|.||.+.- -||.|....+ ++.|+++| |++||+|+.+- |..+-..+++ ..+|+. ...++.|
T Consensus 96 ~~iGI~l~t---~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsIN---G~~V~s~~DL---~~iL~~~~g~~V~L 165 (402)
T TIGR02860 96 QSIGVKLNT---KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKIN---GEKIKNMDDL---ANLINKAGGEKLTL 165 (402)
T ss_pred EEEEEEEec---CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEEC---CEECCCHHHH---HHHHHhCCCCeEEE
Confidence 356666643 3666655432 35577778 99999999875 3334344444 344442 2456888
Q ss_pred EEeecc
Q 022783 164 KMQKRY 169 (292)
Q Consensus 164 ~l~r~~ 169 (292)
++.|.-
T Consensus 166 tV~R~G 171 (402)
T TIGR02860 166 TIERGG 171 (402)
T ss_pred EEEECC
Confidence 888754
No 287
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.10 E-value=1.4 Score=45.76 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc---------CCCCc------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLG---------SKPTP------EESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALe---------ldP~~------~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
|+|.++|..+.|.-++..|.+||. +.|.. ...-.+.||.+..|...|+.-.|.+|+.+|+..
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 899999999999999999999994 23321 012357999999999999999999999999875
No 288
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.87 E-value=2.5 Score=29.62 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 255 SYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 255 ~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+++|..|..+|+.+.|.+.|++.++-|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4789999999999999999999999654
No 289
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=2.3 Score=41.07 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=58.1
Q ss_pred EEecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhh--ccCCceEEEEe
Q 022783 89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQ 166 (292)
Q Consensus 89 v~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~ 166 (292)
|.-..-|||.+..+.-|++||..|.+|+=-++-..|.|||-|.++. |..|.--+-| +|-..++ .|...+.|+|-
T Consensus 133 ~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiN---ge~ivG~RHY-eVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 133 VKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAIN---GESIVGKRHY-EVARMLKELPRGETFTLRLI 208 (334)
T ss_pred EecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhc---CccccchhHH-HHHHHHHhcccCCeeEEEee
Confidence 3445679999999889999999999999999988999999998875 4445545555 3444444 46777888885
Q ss_pred ec
Q 022783 167 KR 168 (292)
Q Consensus 167 r~ 168 (292)
-|
T Consensus 209 eP 210 (334)
T KOG3938|consen 209 EP 210 (334)
T ss_pred cc
Confidence 54
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=81.45 E-value=17 Score=29.73 Aligned_cols=66 Identities=24% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------EESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~-------------------~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
...|......++.+.++..+.+++.+-..+ .....++-.++-.+...|++++|+..|.+++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 355777778899999999999999754321 0113345666677888999999999999999
Q ss_pred HhCcc
Q 022783 280 LAGYE 284 (292)
Q Consensus 280 elG~~ 284 (292)
.+.+-
T Consensus 90 ~~dP~ 94 (146)
T PF03704_consen 90 ALDPY 94 (146)
T ss_dssp HHSTT
T ss_pred hcCCC
Confidence 98754
No 291
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=81.26 E-value=1.8 Score=43.91 Aligned_cols=25 Identities=36% Similarity=0.747 Sum_probs=22.8
Q ss_pred EEEeCCCCCcccccCcccCCEEEEec
Q 022783 109 IDAIAPGGSADKTGMFQVGDKVLATS 134 (292)
Q Consensus 109 V~~v~~ggnA~k~g~i~vGD~l~~~S 134 (292)
|..|.|++-|+++| |++||+|+++-
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsIN 26 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSIN 26 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEEC
Confidence 56789999999999 99999999985
No 292
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.22 E-value=2.6 Score=32.63 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
-+.+..|+.+-+.|+|++|+.+|.+||+
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556888999999999999999998874
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.97 E-value=3.6 Score=43.75 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=86.5
Q ss_pred cccccCcccCCEEEEeccc------cCcccccccchhhHHHHhh--ccCCceEEEEeeccCCcc--ccccccHHH--HHH
Q 022783 118 ADKTGMFQVGDKVLATSAV------FGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKRYGKME--QTGELSEKE--IIR 185 (292)
Q Consensus 118 A~k~g~i~vGD~l~~~Sa~------fg~e~w~a~~~g~~~~ai~--~r~g~v~l~l~r~~~~~~--~~~~~~e~~--~~~ 185 (292)
+-++| +=|||.+++++++ .|+++.....+.++||.|. .+-.-+||.=+. +-=.. ..-++=|=| .+|
T Consensus 522 ~v~tg-~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke-~nVi~y~l~l~vleyqt~vmr 599 (794)
T KOG0276|consen 522 SVKTG-KWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKE-LNVISYKILLEVLEYQTLVLR 599 (794)
T ss_pred heeec-eeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeeecCCEEEEeecc-cceEeEeeehHHHHHHHHhhh
Confidence 33566 7799999999986 7899999999999999998 444445553221 00000 000001111 111
Q ss_pred Hhh--ccccchhhHHHHH--HHhhHHHHHhhHhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHH
Q 022783 186 AER--NSGVISNRVREIQ--MQNYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA 254 (292)
Q Consensus 186 a~r--N~GvI~~~l~eiq--ea~Y~kkk~lk~~~-------~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a 254 (292)
-.+ ..|++..--++++ .+++..+..-++++ +.-|+++ .+.|+++.|.+.-. +.+.. .=
T Consensus 600 rd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFela---l~lgrl~iA~~la~---e~~s~-----~K 668 (794)
T KOG0276|consen 600 RDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELA---LKLGRLDIAFDLAV---EANSE-----VK 668 (794)
T ss_pred ccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhh---hhcCcHHHHHHHHH---hhcch-----HH
Confidence 111 1122221111111 12333333333333 3334444 46788888866543 33321 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 255 SYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 255 ~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
|--++-.....+++..|-+|+.+|.++|
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 8888999999999999999999998776
No 294
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.56 E-value=16 Score=35.10 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~D 285 (292)
+.=..+.+.++++.|+.+-++.|.++|+.+ .-+--+|..|..+|.+.-|+++++..++.=.+|
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 445567889999999999999999999842 236678999999999999999999987765554
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.43 E-value=5.7 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHHHHcC----CCCc-cchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 022783 226 YRTGKYEVAREKFESVLGS----KPTP-EESSVASYNVACCYSKLN-QVKAGLSALEDALLA 281 (292)
Q Consensus 226 ~k~gdYeeAIe~fekALel----dP~~-~d~a~a~YN~AccyakLg-q~eeALe~LekAIel 281 (292)
-++||++.|...|.++=.+ +|+. ...+..+||.+......+ ++++|+..+++|.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4689999999999997643 4442 223678999999999999 999999999999887
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.62 E-value=14 Score=39.16 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=85.6
Q ss_pred ccccchhhHHHHhhccCCceEEEEeeccCCccccccccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-H
Q 022783 142 WPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-R 220 (292)
Q Consensus 142 w~a~~~g~~~~ai~~r~g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n 220 (292)
|-...+|..+-+-|-+-.|-.-..+| +..-....|+|+-+=|.|-.+ ..---+...|.+.-+.-+.+..++ |
T Consensus 341 ~~en~~~~~tP~sr~hrsp~~a~~~~------~~eL~e~ie~~~~egnd~ly~-~~~~~~i~~~s~a~q~~~~~~~~l~n 413 (758)
T KOG1310|consen 341 WYENNFGASTPASRVHRSPYTAAQPR------FYELPENIEKFKTEGNDGLYE-SIVSGAISHYSRAIQYVPDAIYLLEN 413 (758)
T ss_pred cccCCccccCCccccccCcccccccc------hhhchHHHHHHHhhccchhhh-HHHHHHHHHHHHHhhhccchhHHHHh
Confidence 44555554444444443343333333 211123445677666655433 222233357777766666664544 7
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 221 EGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 221 ~G~~L~k~---gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
.+-++.+. |+--.|+.--..||.+||- ...+||.+|-|+-.++++.+|+++...+...-+.|+
T Consensus 414 raa~lmkRkW~~d~~~AlrDch~Alrln~s---~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 414 RAAALMKRKWRGDSYLALRDCHVALRLNPS---IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHhhhccccHHHHHHhHHhhccCChH---HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 77777553 6777788888899999995 567899999999999999999998876665544344
No 297
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=78.40 E-value=10 Score=30.26 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=41.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCc--------cccc-CcccCCEEEEeccccCcccccccchhhHHHHhhccCC-ceEEE
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSA--------DKTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMK 164 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA--------~k~g-~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g-~v~l~ 164 (292)
||..|.-. +|+.-|..|-+|-+- ++.| .|++||.|+++- |.++=+..++ -.++....| .|.|+
T Consensus 3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aIn---G~~v~~~~~~---~~lL~~~agk~V~Lt 75 (88)
T PF14685_consen 3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAIN---GQPVTADANP---YRLLEGKAGKQVLLT 75 (88)
T ss_dssp -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEET---TEE-BTTB-H---HHHHHTTTTSEEEEE
T ss_pred cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEEC---CEECCCCCCH---HHHhcccCCCEEEEE
Confidence 78889887 688889999887433 3344 578999999986 4444444444 245555555 78999
Q ss_pred EeeccC
Q 022783 165 MQKRYG 170 (292)
Q Consensus 165 l~r~~~ 170 (292)
+.++-+
T Consensus 76 v~~~~~ 81 (88)
T PF14685_consen 76 VNRKPG 81 (88)
T ss_dssp EE-STT
T ss_pred EecCCC
Confidence 988765
No 298
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.36 E-value=11 Score=41.44 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.-+|..++++|++++|+.+.+..-...+++ +. .+--+-.||-.++++++|+..+++|+.--+
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~--tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGTD-DL--TLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCCc-hH--HHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 478999999999999997776655666652 22 355667899999999999999999987643
No 299
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=78.28 E-value=18 Score=26.86 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-ch--hHHHHHHHHHHHhcCCHHHHHHHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE-ES--SVASYNVACCYSKLNQVKAGLSAL 275 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~-d~--a~a~YN~AccyakLgq~eeALe~L 275 (292)
.+..|..++..|+|=+|-+.++......|.+. +. +.+..=.|+.+.+.|+.+-|...|
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 56889999999999999999999996555431 11 344555567788889998887643
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.26 E-value=65 Score=31.04 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=93.1
Q ss_pred ccccccchh-------hHHHHhhcc--CCceEEEEeeccCCccccccc-cHHHHHHHhhccccchhhHHHHHHHhhHHH-
Q 022783 140 EIWPAAEYG-------RTMYTIRQR--VGPLLMKMQKRYGKMEQTGEL-SEKEIIRAERNSGVISNRVREIQMQNYMKK- 208 (292)
Q Consensus 140 e~w~a~~~g-------~~~~ai~~r--~g~v~l~l~r~~~~~~~~~~~-~e~~~~~a~rN~GvI~~~l~eiqea~Y~kk- 208 (292)
=+|+..+=- ++++-||.- .+++-|.-+++-=.+..++++ ++...|.+..+.|.......+.+...+...
T Consensus 49 llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (280)
T COG3629 49 LLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAGELLSE 128 (280)
T ss_pred hccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHHHHHhhc
Confidence 467754432 344444422 355666555553334455665 677788888877777776666666433333
Q ss_pred ------------HHhhHhH-HHH-----HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHH
Q 022783 209 ------------KEQKERR-EQD-----LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA 270 (292)
Q Consensus 209 ------------k~lk~~~-~~~-----~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~ee 270 (292)
-....+. .+. ..++..+...++++.+++.+++-++.+|.+ . .+|+-+=-.|...|+...
T Consensus 129 g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E-~~~~~lm~~y~~~g~~~~ 205 (280)
T COG3629 129 GPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD--E-PAYLRLMEAYLVNGRQSA 205 (280)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--h-HHHHHHHHHHHHcCCchH
Confidence 0011111 111 256667777899999999999999999974 2 368899999999999999
Q ss_pred HHHHHHHH-----HHhCcc
Q 022783 271 GLSALEDA-----LLAGYE 284 (292)
Q Consensus 271 ALe~LekA-----IelG~~ 284 (292)
|+..|++. .++|.+
T Consensus 206 ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 206 AIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHhhhhcCCC
Confidence 99999876 445554
No 301
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=77.20 E-value=3.8 Score=45.35 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=62.3
Q ss_pred eEEEEecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEE
Q 022783 86 EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM 165 (292)
Q Consensus 86 ~~~v~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l 165 (292)
..+.+..--||.-|-.+ --|.|..|.+||.+. |.+.+||+|+++ ++|=+.+.--.+|+..+|.--..|.|.+
T Consensus 58 ~vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~v----N~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 58 QVQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAV----NGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred hhhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEe----cCcccccccHHHHHHHHHHHhhhcceEE
Confidence 35566677788888876 689999999999976 889999999995 4677777777899999998888898888
Q ss_pred eec
Q 022783 166 QKR 168 (292)
Q Consensus 166 ~r~ 168 (292)
-++
T Consensus 130 ~qP 132 (1298)
T KOG3552|consen 130 CQP 132 (1298)
T ss_pred ecc
Confidence 886
No 302
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.01 E-value=4.8 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHcCCC
Q 022783 219 LREGLQLYRTGKYEVAREKFE--SVLGSKP 246 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fe--kALeldP 246 (292)
+-.|..++..|+|++|++.|+ -+..++|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 355666667777777777733 4444444
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.68 E-value=10 Score=37.72 Aligned_cols=65 Identities=20% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
-+++.+...++.|+.++|...|+-||.+.|++.+ ++--.+-..-.-+++-+|=.+|-+|+.+...
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---ILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---HHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3457777778888888888888888888887643 3444555555556666666677776655443
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=6.2 Score=37.74 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCC---ccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 221 EGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 221 ~G~~L~k~gdYeeAIe~fekALeldP~---~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
-|+.+.-.+.|..|=..|.+|-++.-. -+|.+..|.-.+-||.+. +.++|+.+|++||++ |.|-
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieI-yt~~ 106 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEI-YTDM 106 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH-HHhh
Confidence 344444457777777777777643221 135566777777888775 889999999999887 5543
No 305
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=5 Score=39.76 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 226 ~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
.+..+|++||++...-.+-+|.+ ...+.-++.||....++..|-+|+++-
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~---rAgLSlLgyCYY~~Q~f~~AA~CYeQL 70 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS---RAGLSLLGYCYYRLQEFALAAECYEQL 70 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666542 234555566666666666666666543
No 306
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.74 E-value=16 Score=40.49 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=63.3
Q ss_pred hhHHHHHHHhhHHHHHhhHhH----HHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHH
Q 022783 195 NRVREIQMQNYMKKKEQKERR----EQDLREGLQLYRT----G---KYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (292)
Q Consensus 195 ~~l~eiqea~Y~kkk~lk~~~----~~~~n~G~~L~k~----g---dYeeAIe~fekALeldP~~~d~a~a~YN~Accya 263 (292)
.++++.+...|++...--+-+ +..|..|+++.++ | .+++|+..|++--.. |. +..=|-.+|.+|-
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~ 563 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VG---APLEYLGKALVYQ 563 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CC---CchHHHhHHHHHH
Confidence 345555556777766544333 4457889988542 3 588999999886644 32 2334889999999
Q ss_pred hcCCHHHHHHHHHHHHHhCccChhh
Q 022783 264 KLNQVKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 264 kLgq~eeALe~LekAIelG~~Df~~ 288 (292)
.+|++++=+++|.-|++. |.+++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~-~~~~~~ 587 (932)
T PRK13184 564 RLGEYNEEIKSLLLALKR-YSQHPE 587 (932)
T ss_pred HhhhHHHHHHHHHHHHHh-cCCCCc
Confidence 999999999999999987 665543
No 307
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=74.49 E-value=6.4 Score=35.69 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=35.0
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEecc
Q 022783 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (292)
Q Consensus 95 lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa 135 (292)
.||.+.+ .||.+.|+.|..|+.|+++| +.-|++|+.+..
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~v 151 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVEV 151 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEEe
Confidence 6888877 57899999999999999999 999999998875
No 308
>PRK11906 transcriptional regulator; Provisional
Probab=74.39 E-value=8.3 Score=39.51 Aligned_cols=54 Identities=13% Similarity=-0.040 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 228 ~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+-.+|+..-++|++++|++ +.++.-+|..+...++++.|+..+++|+.+.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVD---GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 456789999999999999974 678999999999999999999999999999865
No 309
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.33 E-value=17 Score=36.74 Aligned_cols=67 Identities=22% Similarity=0.126 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC--CC-----------c---------------cchhHHHHHHHHHHHhcCCHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSK--PT-----------P---------------EESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeld--P~-----------~---------------~d~a~a~YN~AccyakLgq~eeA 271 (292)
-.+..+...|++++|.++..++|.-. |+ + ++...+++-++..|.+.+.|.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 45667788999999999999998522 21 1 23356899999999999999999
Q ss_pred HHHHHHHHHhCccCh
Q 022783 272 LSALEDALLAGYEDF 286 (292)
Q Consensus 272 Le~LekAIelG~~Df 286 (292)
-++|+.||+.+.+.+
T Consensus 348 ~~~leaAl~~~~s~~ 362 (400)
T COG3071 348 SEALEAALKLRPSAS 362 (400)
T ss_pred HHHHHHHHhcCCChh
Confidence 999999999998743
No 310
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.33 E-value=6.3 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
..+..|+..-+.|+|++|+.+|..|++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445778888888999999999999884
No 311
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.93 E-value=4.7 Score=42.46 Aligned_cols=72 Identities=18% Similarity=0.020 Sum_probs=59.3
Q ss_pred HhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCcc
Q 022783 210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYE 284 (292)
Q Consensus 210 ~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg---q~eeALe~LekAIelG~~ 284 (292)
++.+..++.+.+|+..+.......||..|.+++..-|. ...+|-|+|.++.+.+ +.-.||.+|-.|+.+...
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 44444566778999999999999999999999999886 4568999999999864 566899999999988744
No 312
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.59 E-value=6.6 Score=29.83 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
-..+..|+..-+.|+|++|+.+|.+|++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788888899999999999999884
No 313
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.30 E-value=5.1 Score=31.23 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
-..+..|+..-+.|+|++|+..|..||+
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 3456788888899999999999999995
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.94 E-value=13 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d 250 (292)
...+++|......|++++|+..+++|+.+-....|
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 44579999999999999999999999976554333
No 315
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=72.84 E-value=2.4 Score=42.15 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
+.+....+.+.|..|+..-..+|+.++. ...+||-+++.|..+.++++|+++++.|...-..|..
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred chHHhcccccCCCcceeccccccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 5566667888888888888888886664 4568999999999999999999999999887766554
No 316
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.66 E-value=6.5 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
-..+..|+..-+.|+|++|+.+|.+||+
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456888889999999999999999884
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.49 E-value=53 Score=30.23 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=48.1
Q ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCH-----------------HHHHHHH
Q 022783 219 LREGLQLYRT------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-----------------KAGLSAL 275 (292)
Q Consensus 219 ~n~G~~L~k~------gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~-----------------eeALe~L 275 (292)
+..|.-.... +++++++..|.+|++++|+. ..+|++.|..+.++=+. ..||.+|
T Consensus 256 l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 256 LLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW---EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 3555555555 99999999999999999974 34688888777655222 4599999
Q ss_pred HHHHHhCcc
Q 022783 276 EDALLAGYE 284 (292)
Q Consensus 276 ekAIelG~~ 284 (292)
-+|+.+|-+
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 999999976
No 318
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=72.24 E-value=17 Score=33.91 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLYR-TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~k-~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
++.-|..-+. .++.+-|..+|+.+|..-|... ..|..-.-.+.++|+.+.|-..+++|+..
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---DFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 3466777666 5777779999999998877642 34555567788899999999999999765
No 319
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=71.80 E-value=11 Score=31.86 Aligned_cols=34 Identities=41% Similarity=0.587 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d 250 (292)
+.+.+|..|...|++++|+.+|-+||...|++.+
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 3358999999999999999999999999998643
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=71.72 E-value=39 Score=31.45 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHcC----CCCc---cc----hhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTG-KYEVAREKFESVLGS----KPTP---EE----SSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 216 ~~~~n~G~~L~k~g-dYeeAIe~fekALel----dP~~---~d----~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
.-.++-|..+++.+ +|++|+.++++|+++ .+.. .+ ...++..+|.+|...+..+...+ |.++
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~ 109 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNA 109 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHH
Confidence 34569999999999 999999999999977 2211 11 24568889999998887764333 4444
No 321
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.10 E-value=19 Score=34.87 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
-+++....+++|+||....+.||.-+++. ...+-|+-.|-..+|.-.++.+.+..-++.-...+..|
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~d---petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEALDKDAKD---PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 56777788999999999999999999874 34588999999999999898888877776665544443
No 322
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.98 E-value=20 Score=37.49 Aligned_cols=65 Identities=26% Similarity=0.227 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCC--Cc--cchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKP--TP--EESSVASYNVACCYSKLNQ-VKAGLSALEDALLAG 282 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP--~~--~d~a~a~YN~AccyakLgq-~eeALe~LekAIelG 282 (292)
.+-+|.++..+|+-+.|-.+|..+++-.- +. --...++|-+||.|-.++. +.+|...|.+|-+.+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 35789999999999999999999984211 10 1236789999999999999 999999999998774
No 323
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.34 E-value=10 Score=34.98 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHc-----CCCCccchhHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCccChhh
Q 022783 232 EVAREKFESVLG-----SKPTPEESSVASYNVACCY-SKLNQVKAGLSALEDALLAGYEDFKV 288 (292)
Q Consensus 232 eeAIe~fekALe-----ldP~~~d~a~a~YN~Accy-akLgq~eeALe~LekAIelG~~Df~~ 288 (292)
++|.+.|++|++ +.|.++-.--+.-|-+.+| -.+|+.++|++..++|++....+...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~ 205 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Confidence 678888888883 6777655544567777776 55899999999999998877654443
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.65 E-value=51 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 234 AREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 234 AIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+..++++++.+|++ ..+.|.+|.++...|++++|++.|-+.+...
T Consensus 7 ~~~al~~~~a~~P~D---~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANPDD---LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 577889999999984 3579999999999999999999999998775
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=16 Score=35.12 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc---cchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSK-LNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~---~d~a~a~YN~Accyak-Lgq~eeALe~LekAIel 281 (292)
+-++---|+..+-++|+.+.++++++=-+. ...+.-|.-+|-.|-. +.++++||.++++|-+.
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333444466779999999999999765431 1112223344444433 36777777777777543
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.16 E-value=6.9 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFE 239 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fe 239 (292)
.+.+|..+...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3589999999999999999876
No 327
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=68.45 E-value=11 Score=37.93 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=60.2
Q ss_pred cccccceEEEEecCC----ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHH
Q 022783 80 QEEKYEEYEVEIEQP----YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (292)
Q Consensus 80 ~~~~~~~~~v~l~KP----lGl~~~~~~~G--~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~a 153 (292)
++|..++-+|+|.+- |||.+.-+..- -|.|..|-++..|+-+|++=|||-|+.|... -..+-.-..+...
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi----~v~~c~HeevV~i 124 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGI----YVTACPHEEVVNI 124 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccE----EeecCChHHHHHH
Confidence 456667788998763 56766554332 7899999999999999999999999997642 2334444466777
Q ss_pred hhccCCceEEEE
Q 022783 154 IRQRVGPLLMKM 165 (292)
Q Consensus 154 i~~r~g~v~l~l 165 (292)
+|+-...|.|++
T Consensus 125 LRNAGdeVtlTV 136 (505)
T KOG3549|consen 125 LRNAGDEVTLTV 136 (505)
T ss_pred HHhcCCEEEEEe
Confidence 887777777754
No 328
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=68.42 E-value=9.8 Score=29.93 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 214 RREQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 214 ~~~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
.++..++.|+.+-+.|+.++|+..|.+++.
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 456778999999999999999999999983
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.30 E-value=48 Score=30.18 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---------------
Q 022783 206 MKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--------------- 266 (292)
Q Consensus 206 ~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg--------------- 266 (292)
+.+..........++.|..|.. ..++++|+.+|.+|-+... ..++|+.+ ++..-|
T Consensus 178 ~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~ 251 (292)
T COG0790 178 YRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-----GAACYNLG-LMYLNGEGVKKAAFLTAAKEE 251 (292)
T ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-----HHHHHHHH-HHHhcCCCchhhhhcccccCC
Confidence 3333333344566788877754 3589999999999998875 34689999 666555
Q ss_pred CHHHHHHHHHHHHHhCccCh
Q 022783 267 QVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 267 q~eeALe~LekAIelG~~Df 286 (292)
+...|+..+.++.+.|+...
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 252 DKKQALEWLQKACELGFDNA 271 (292)
T ss_pred CHHHHHHHHHHHHHcCChhH
Confidence 88999999999999998743
No 330
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.20 E-value=14 Score=24.74 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--HHHHhCc
Q 022783 254 ASYNVACCYSKLNQVKAGLSALE--DALLAGY 283 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~Le--kAIelG~ 283 (292)
.||-.|+++..+|++++|++.+. -+..+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 48899999999999999999954 6655543
No 331
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=68.09 E-value=5 Score=39.53 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=52.2
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccCCc
Q 022783 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172 (292)
Q Consensus 95 lGl~~~~~~~--G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~~~ 172 (292)
.||.+.-+.- .-+||+.|-.+..|++.|.|+.||.|++|..+- +....--.|-.+|..--++|.+..-+--++.
T Consensus 18 iGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~s----vKGktKveVAkmIQ~~~~eV~IhyNKL~adp 93 (429)
T KOG3651|consen 18 IGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGIS----VKGKTKVEVAKMIQVSLNEVKIHYNKLEADP 93 (429)
T ss_pred eeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEeccee----ecCccHHHHHHHHHHhccceEEEehhcccCc
Confidence 4665543311 168999999999999999999999999987531 0111122466789988999988766555544
No 332
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.08 E-value=10 Score=38.27 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCc------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP------EESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~------~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
+-+...+.-+|||..||+..+. |+++... .-.-..+|+.|.||..+++|.+|+..+...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566778999999998764 2333221 0012369999999999999999999999884
No 333
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=66.48 E-value=9.4 Score=29.50 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
+.+.+|+..-+.|+|++|+.+|.++|+
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456778888888999999999888874
No 334
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.41 E-value=20 Score=34.74 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 229 gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~ 287 (292)
...++-+...+.-|..||++ ..-|.-+|-+|..+|++..|+.+|.+|+.+-.++-+
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 136 QEMEALIARLETHLQQNPGD---AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH
Confidence 44677888888999999984 345999999999999999999999999999777543
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.33 E-value=8.1 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSK 245 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeld 245 (292)
..+|..-.+.++|++|++-|.++|++.
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888899998888888754
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.32 E-value=32 Score=35.47 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHc----C-CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCcc
Q 022783 219 LREGLQLYRT----G-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYE 284 (292)
Q Consensus 219 ~n~G~~L~k~----g-dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg---q~eeALe~LekAIelG~~ 284 (292)
..+|..|++. . +++.|+..|.+|-++... .+.|+++.||..-. ++..|.+.+..|.+.|..
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~ 360 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI 360 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh
Confidence 4677777763 3 788899999998877653 36889999988866 567899999999888864
No 337
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=65.96 E-value=17 Score=31.13 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=41.0
Q ss_pred CCceeEEee--eC---CCCeEEEEeCCCCCcccccCccc-CCEEEEecc-ccCcccccccchhhHHHHhhccCCceEEEE
Q 022783 93 QPYGLKFAK--GR---DGGTYIDAIAPGGSADKTGMFQV-GDKVLATSA-VFGTEIWPAAEYGRTMYTIRQRVGPLLMKM 165 (292)
Q Consensus 93 KPlGl~~~~--~~---~G~v~V~~v~~ggnA~k~g~i~v-GD~l~~~Sa-~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l 165 (292)
..||+.+.- -. ..+.-|..|.|++-|+++| +++ .|.|+++.. .|. ..++|.....+ ....++.|.+
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~----~~~~l~~~v~~--~~~~~l~L~V 98 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD----DEDDLFELVEA--NENKPLQLYV 98 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE------STCHHHHHHHH--TTTS-EEEEE
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC----CHHHHHHHHHH--cCCCcEEEEE
Confidence 567865543 23 4488999999999999999 666 799999763 233 34555543333 3345677777
Q ss_pred ee
Q 022783 166 QK 167 (292)
Q Consensus 166 ~r 167 (292)
..
T Consensus 99 yn 100 (138)
T PF04495_consen 99 YN 100 (138)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 338
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=65.39 E-value=35 Score=31.95 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
+-++++.+..+++.+|....++..+.+|..+.. .-+--.|.+|.-+|++.+|-..++.||.- |.++
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~ 193 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISY-YPGP 193 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHh-CCCH
Confidence 477888899999999999999999999875332 12334477889999999999999999876 4443
No 339
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=64.74 E-value=13 Score=25.23 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.|--+|-+-...++|++|++++++|+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3555677777888999999999999987
No 340
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.97 E-value=27 Score=36.06 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=54.0
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhc----CCHHHHHHHHH
Q 022783 204 NYMKKKEQKERREQDLREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----NQVKAGLSALE 276 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~~n~G~~L~k~g---dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakL----gq~eeALe~Le 276 (292)
+|+.+.......+..+++|..+.... ++..|.++|..|....- ..+.|++|.||..= -+.+.|+..+.
T Consensus 314 ~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-----~~A~~~la~~y~~G~gv~r~~~~A~~~~k 388 (552)
T KOG1550|consen 314 KLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-----ILAIYRLALCYELGLGVERNLELAFAYYK 388 (552)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 33333333334456678888886544 68899999999986653 24789999998753 37889999999
Q ss_pred HHHHhC
Q 022783 277 DALLAG 282 (292)
Q Consensus 277 kAIelG 282 (292)
+|-+.|
T Consensus 389 ~aA~~g 394 (552)
T KOG1550|consen 389 KAAEKG 394 (552)
T ss_pred HHHHcc
Confidence 998888
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.77 E-value=12 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGS 244 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALel 244 (292)
++++.+|.+.|+++.|.+..+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 58899999999999999999999953
No 342
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=63.58 E-value=16 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=21.2
Q ss_pred HHHHHHH--HHHHhcC-----CHHHHHHHHHHHHHhC
Q 022783 253 VASYNVA--CCYSKLN-----QVKAGLSALEDALLAG 282 (292)
Q Consensus 253 ~a~YN~A--ccyakLg-----q~eeALe~LekAIelG 282 (292)
.+.|++| .+|..-. ++++|+..+++|-+.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 3678888 4444432 4788999999998877
No 343
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.74 E-value=27 Score=30.46 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-cChhh
Q 022783 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY-EDFKV 288 (292)
Q Consensus 229 gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~-~Df~~ 288 (292)
+.-+..++..++.+...|+ ...+.|.+.++..+|+.++|-..+.++..+=. ++|.+
T Consensus 125 ~~l~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~ 181 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAA 181 (193)
T ss_pred HHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHH
Confidence 3345667777888888896 45789999999999999999999999988844 24544
No 344
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.73 E-value=12 Score=22.08 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.|..+=.+|.+.|++++|++.+++=.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 366667778888888888888877766653
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.59 E-value=67 Score=32.62 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=78.1
Q ss_pred CcccccCcccCCEEEEeccc-----cCcccccccchhhHHHHhhccC--CceEEEEeeccCCccccccccHHHHHHHhhc
Q 022783 117 SADKTGMFQVGDKVLATSAV-----FGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKRYGKMEQTGELSEKEIIRAERN 189 (292)
Q Consensus 117 nA~k~g~i~vGD~l~~~Sa~-----fg~e~w~a~~~g~~~~ai~~r~--g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN 189 (292)
..-|+| +=+||++++|+.. .|++.--...+..++|.++-.+ +.|+ .+-|...-....-+++|=+ |+.---
T Consensus 197 ~~IkSg-~W~~d~fiYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly-~~Dr~~~v~~~~ld~~~~~-fk~av~ 273 (443)
T PF04053_consen 197 ERIKSG-CWVEDCFIYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLY-LIDRDGNVISYELDLSELE-FKTAVL 273 (443)
T ss_dssp S--SEE-EEETTEEEEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEE-EE-TT--EEEEE--HHHHH-HHHHHH
T ss_pred ceeEEE-EEEcCEEEEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEE-EEECCCCEEEEEECHHHHH-HHHHHH
Confidence 345677 7789999999985 6667777777778889888666 4443 3455555445555666664 322222
Q ss_pred cccchhhHHHHHH---------------HhhHHHHHhhHhHHHHH----HHHHHHHHcCCHHHHHHHHHHHHcCCCCccc
Q 022783 190 SGVISNRVREIQM---------------QNYMKKKEQKERREQDL----REGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (292)
Q Consensus 190 ~GvI~~~l~eiqe---------------a~Y~kkk~lk~~~~~~~----n~G~~L~k~gdYeeAIe~fekALeldP~~~d 250 (292)
.+++...++.++. ..|.+++-.++.+.+.. .+=....+.|+.+.|++. |-+++ +
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~---a~~~~-~--- 346 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEI---AKELD-D--- 346 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHH---CCCCS-T---
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHH---HHhcC-c---
Confidence 2333332222221 24444433333331111 111112345666666543 22222 1
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 251 SSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 251 ~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
...|-.+|-....+|+++-|.+++.++=
T Consensus 347 -~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 347 -PEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 2369999999999999999999998874
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.51 E-value=18 Score=26.70 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
..+.+.|.-+-..|++++|++.+.+|++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566666677778888888888888764
No 347
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.47 E-value=19 Score=22.17 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 022783 254 ASYNVACCYSKL----NQVKAGLSALEDALLAG 282 (292)
Q Consensus 254 a~YN~AccyakL----gq~eeALe~LekAIelG 282 (292)
+.+++|.+|..= .+.++|+..+++|.+.|
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 577888887642 37888888888888776
No 348
>PF12854 PPR_1: PPR repeat
Probab=62.44 E-value=20 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 253 VASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~Lek 277 (292)
..|.-+=.+|.+.|++++|++.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4577777889999999999888764
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.39 E-value=42 Score=37.51 Aligned_cols=74 Identities=24% Similarity=0.140 Sum_probs=47.9
Q ss_pred chhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHH
Q 022783 193 ISNRVREIQMQNYMKKKEQKERREQDLREGLQLYR-TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (292)
Q Consensus 193 I~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k-~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeA 271 (292)
|+-+.-|..+.-|.+.| +++ +-|.+|+ .|+|++|+++-+.-=.+ .....|||.|--+-.-++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ck-----R~D---LlNKlyQs~g~w~eA~eiAE~~DRi-----HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCK-----RYD---LLNKLYQSQGMWSEAFEIAETKDRI-----HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHH-----HHH---HHHHHHHhcccHHHHHHHHhhccce-----ehhhhHHHHHHHHHhhccHHHH
Confidence 34444444445666555 333 3334444 58888887765432111 1245699999999999999999
Q ss_pred HHHHHHHH
Q 022783 272 LSALEDAL 279 (292)
Q Consensus 272 Le~LekAI 279 (292)
|+.++|+=
T Consensus 878 leyyEK~~ 885 (1416)
T KOG3617|consen 878 LEYYEKAG 885 (1416)
T ss_pred HHHHHhcC
Confidence 99999983
No 350
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.08 E-value=12 Score=29.23 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 230 dYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
+.++|+....+|++.|- .|+|++|+..|..||+.
T Consensus 2 ~l~kai~Lv~~A~~eD~------------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE------------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH------------------hhhHHHHHHHHHHHHHH
Confidence 35677888888876543 25566666666666543
No 351
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=61.35 E-value=23 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=40.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHh
Q 022783 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-----------VKAGLSALEDALLA 281 (292)
Q Consensus 221 ~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq-----------~eeALe~LekAIel 281 (292)
++..++..|++-+|+++.++.+...++......+++-.+..+.++.. .-.|++++.+|+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 56778999999999999999998777643333455555555544331 23456666666554
No 352
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.19 E-value=47 Score=33.64 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=58.4
Q ss_pred HHHHhhccccchhhHHHHHHHhhHHHHHhh----HhHHHHH--HHHHHHHHcCCHHHHHHHHHHHHcCCCCcc-------
Q 022783 183 IIRAERNSGVISNRVREIQMQNYMKKKEQK----ERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPE------- 249 (292)
Q Consensus 183 ~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk----~~~~~~~--n~G~~L~k~gdYeeAIe~fekALeldP~~~------- 249 (292)
-..+.|++|+...+..-|+. -+.+ .+.++++ =.+.-|.+.|-|++|-+.-.+||++||..-
T Consensus 143 sh~a~fy~G~~~~~k~ai~k------Iip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~a 216 (491)
T KOG2610|consen 143 SHDAHFYNGNQIGKKNAIEK------IIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKA 216 (491)
T ss_pred hhhHHHhccchhhhhhHHHH------hccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHH
Confidence 34788888887766555543 1111 1113333 234445788999999999999999999840
Q ss_pred --------------------c--------hhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 250 --------------------E--------SSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 250 --------------------d--------~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
+ .+--|...|.||..-+.|+.|++.+++=|
T Consensus 217 HVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 217 HVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 0 01225567777777777777777777664
No 353
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.89 E-value=22 Score=21.11 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 255 SYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 255 ~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
|.-+=.+|.+.|++++|++.+.+-.+.|.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 55566778888888888888888777765
No 354
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.64 E-value=12 Score=40.40 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-cchhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKLN--QVKAGLSALEDALLAGY 283 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~-~d~a~a~YN~AccyakLg--q~eeALe~LekAIelG~ 283 (292)
+...+|+.++...+|++|.-.|..++.+-|.. .+.+....|++.||..+| +|..++..|+=|+..-.
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP 124 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence 44467788888888888888888888777742 233556778888877654 67777777777666543
No 355
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.66 E-value=80 Score=25.43 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 022783 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (292)
Q Consensus 215 ~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~ 247 (292)
....+.+|+..+-+|||+.|.+...++-+..++
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 457789999999999999999999999877554
No 356
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.56 E-value=18 Score=28.46 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAI 279 (292)
.+-|+|.++-..|+.++|+.+|++||
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 34444444444566777777777664
No 357
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=57.37 E-value=21 Score=27.86 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
..+-.+|.-+-+.|++++||.++++||++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34666677777778888888888888765
No 358
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.29 E-value=18 Score=35.48 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHhhccccchhhHHHHHHHhhHHHHHhh--HhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHH-
Q 022783 185 RAERNSGVISNRVREIQMQNYMKKKEQK--ERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC- 260 (292)
Q Consensus 185 ~a~rN~GvI~~~l~eiqea~Y~kkk~lk--~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Ac- 260 (292)
.-.+|+.-|.-+-+.+..+.--..+++. ++.-.+. ++|+.+.-.|+..+|++..+++++..|...-.-.+.+|++.
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 3445555555555555555323333333 3333344 89999999999999999999999999985222234667764
Q ss_pred ---HHHhcCCHHHHHH
Q 022783 261 ---CYSKLNQVKAGLS 273 (292)
Q Consensus 261 ---cyakLgq~eeALe 273 (292)
||+.--+.+.+|.
T Consensus 333 yEL~Ys~~~~~k~~l~ 348 (366)
T KOG2796|consen 333 YELEYSRSMQKKQALL 348 (366)
T ss_pred HHHHhhhhhhHHHHHH
Confidence 5666555555543
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.92 E-value=14 Score=32.53 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~ 251 (292)
+-+++.+|+.|+|++|+...+.-|+.+|++++.
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 589999999999999999999999999987443
No 360
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=53.90 E-value=38 Score=36.82 Aligned_cols=62 Identities=19% Similarity=0.055 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+.-|..++.+.+|++|.++|++|+..+|++ +.+|.+.=..+...|.-++-.+.+.+....-
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~---GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDN---GDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---chHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4577888899999999999999999999975 5557777778888897777777777665443
No 361
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=53.78 E-value=21 Score=31.38 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.0
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHcCCCCccc
Q 022783 219 LREGLQLYRTG-KYEVAREKFESVLGSKPTPEE 250 (292)
Q Consensus 219 ~n~G~~L~k~g-dYeeAIe~fekALeldP~~~d 250 (292)
+.+|..|...| ++++|+.+|-+||...|++.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 48899999999 999999999999999998644
No 362
>PF13041 PPR_2: PPR repeat family
Probab=53.69 E-value=39 Score=22.82 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=15.9
Q ss_pred HHHHcCCHHHHHHHHHHHH--cCCCC
Q 022783 224 QLYRTGKYEVAREKFESVL--GSKPT 247 (292)
Q Consensus 224 ~L~k~gdYeeAIe~fekAL--eldP~ 247 (292)
.+.+.|++++|++.|++.. .+.|+
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 4466777777777777777 34554
No 363
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.37 E-value=14 Score=22.90 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.2
Q ss_pred ecCCceeEEeeeCCCCeEEEE
Q 022783 91 IEQPYGLKFAKGRDGGTYIDA 111 (292)
Q Consensus 91 l~KPlGl~~~~~~~G~v~V~~ 111 (292)
+..|.||.+. .+|.+||.+
T Consensus 1 f~~P~gvav~--~~g~i~VaD 19 (28)
T PF01436_consen 1 FNYPHGVAVD--SDGNIYVAD 19 (28)
T ss_dssp BSSEEEEEEE--TTSEEEEEE
T ss_pred CcCCcEEEEe--CCCCEEEEE
Confidence 3579999998 799999987
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=53.31 E-value=30 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 250 d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
+...+|..+|-.|.+.|++++|+++|.++.+.-
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 457789999999999999999999999987653
No 365
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.87 E-value=56 Score=33.01 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc---CC---------------------------CCccchhHHHHHHHHHHHhc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG---SK---------------------------PTPEESSVASYNVACCYSKL 265 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe---ld---------------------------P~~~d~a~a~YN~AccyakL 265 (292)
++-++.|..++-.++|.+-...|+.|-+ .+ |..-+...+++.+|.-|...
T Consensus 59 l~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~ 138 (449)
T COG3014 59 LWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLL 138 (449)
T ss_pred HHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHh
Confidence 5557999999999999998877776542 11 11123367899999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 022783 266 NQVKAGLSALEDALLAG 282 (292)
Q Consensus 266 gq~eeALe~LekAIelG 282 (292)
++++.|+.-+.+|.+..
T Consensus 139 nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 139 NDSAKARVEFNRANERQ 155 (449)
T ss_pred cchhhhHHHHHHHHHHH
Confidence 99999999999987653
No 366
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.75 E-value=52 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK 269 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~e 269 (292)
.+-.|..+...|+|.+|+..++.+.+-.|.. ..+--=+|||+..+++.+
T Consensus 47 ~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~---p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 47 DLFDGWLHIVRGDWDDALRLLRELEERAPGF---PYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHcCChH
Confidence 4588999999999999999999988777753 233445699999998764
No 367
>PF13041 PPR_2: PPR repeat family
Probab=52.64 E-value=41 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..|.-+=.+|.+.|++++|++.+++-.+.|..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~ 35 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIK 35 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 45666778899999999999999999999865
No 368
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.61 E-value=1e+02 Score=28.30 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d-~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
..++..+....+.|+|+-|...+.++...++.... ...+.+-.|-.+-..|+-++|+..++..++
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44568888999999999999999999987643222 234577778899999999999999999988
No 369
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.00 E-value=1.1e+02 Score=27.14 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe--ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
.+++++|+...-..+-.+.++..-+-|- -+++ +..++-+|.+|.++|+..+|-+.+.+|-+.|..
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~----p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEIN----PEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4667888877554444556665555552 2222 346899999999999999999999999999865
No 370
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.85 E-value=46 Score=20.02 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekAIelG~ 283 (292)
.|..+-.++++.|+++.|+..+++=.+.|.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 466677788888999999888888777663
No 371
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.71 E-value=43 Score=31.35 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHcCCHHHHHHHHHHHHcCC---CCc--------------------------------------------cchhHHHHHH
Q 022783 226 YRTGKYEVAREKFESVLGSK---PTP--------------------------------------------EESSVASYNV 258 (292)
Q Consensus 226 ~k~gdYeeAIe~fekALeld---P~~--------------------------------------------~d~a~a~YN~ 258 (292)
+..|+|+.|+++.+-||+.+ |+. +|...+-+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 67899999999999999755 321 1222345555
Q ss_pred HHHHHh-----------cCCHHHHHHHHHHHHHhCcc
Q 022783 259 ACCYSK-----------LNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 259 Accyak-----------Lgq~eeALe~LekAIelG~~ 284 (292)
++-+.. .++.+.|+..|++|++++..
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 666555 35778999999999999744
No 372
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=51.14 E-value=77 Score=35.29 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.6
Q ss_pred cccCCEEEEeccccCcc
Q 022783 124 FQVGDKVLATSAVFGTE 140 (292)
Q Consensus 124 i~vGD~l~~~Sa~fg~e 140 (292)
++-||+++.++++..++
T Consensus 108 v~~g~t~vl~t~~~~~~ 124 (891)
T PLN00207 108 VTDGETIVYTSVCLADV 124 (891)
T ss_pred EEECCeEEEEEEEeccC
Confidence 35599999998876543
No 373
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.94 E-value=67 Score=33.49 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~Lek 277 (292)
++.+|.=||-.|+|.+|+-.-.=..++.|. ..+|-=++.|.....+|++|.+++.+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 456777789999999999888888899996 34677889999999999999998864
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.76 E-value=86 Score=28.96 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=47.0
Q ss_pred HHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc-cchhHHHHHHHH
Q 022783 182 EIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVAC 260 (292)
Q Consensus 182 ~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~-~d~a~a~YN~Ac 260 (292)
..|.++-+.+.+...--..+.+.| |-.-|-++|+..+.++|++.+.. .-...++.-+|.
T Consensus 127 ~~fL~~E~~~~l~t~elq~aLAty--------------------Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 127 RRFLQLEGTPELETAELQYALATY--------------------YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHH--------------------HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 357777777777653333333333 34566678888888888655442 112456889999
Q ss_pred HHHhcCCHHHHH
Q 022783 261 CYSKLNQVKAGL 272 (292)
Q Consensus 261 cyakLgq~eeAL 272 (292)
.|.++|+++.|-
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999999873
No 375
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.71 E-value=46 Score=35.11 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=53.0
Q ss_pred ccccchhhHHHHHHHhhHHHHHhhH--------------------hHHH-HHHHHHHHHHcCCHHHHHHHHHHHHc---C
Q 022783 189 NSGVISNRVREIQMQNYMKKKEQKE--------------------RREQ-DLREGLQLYRTGKYEVAREKFESVLG---S 244 (292)
Q Consensus 189 N~GvI~~~l~eiqea~Y~kkk~lk~--------------------~~~~-~~n~G~~L~k~gdYeeAIe~fekALe---l 244 (292)
|+|+|.-.+...+....+.+|.+.+ +.++ .+|.|+.+...|+--+|.+||.++.. -
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999985555555531 1122 35999999999999999999999984 5
Q ss_pred CCCccchhHHHHHHHHHHH
Q 022783 245 KPTPEESSVASYNVACCYS 263 (292)
Q Consensus 245 dP~~~d~a~a~YN~Accya 263 (292)
+| -+|--+|-|..
T Consensus 368 nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NP------RLWLRLAECCI 380 (696)
T ss_pred Cc------HHHHHHHHHHH
Confidence 55 37988886654
No 376
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.98 E-value=64 Score=32.09 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=54.8
Q ss_pred cchhhHHHHHHHhhHHHHHhhH-hH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHc-CCCCc--cchhHHHHHHHHHHH
Q 022783 192 VISNRVREIQMQNYMKKKEQKE-RR--EQD--LREGLQLYRTGKYEVAREKFESVLG-SKPTP--EESSVASYNVACCYS 263 (292)
Q Consensus 192 vI~~~l~eiqea~Y~kkk~lk~-~~--~~~--~n~G~~L~k~gdYeeAIe~fekALe-ldP~~--~d~a~a~YN~Accya 263 (292)
.+...+.+..++.||+=...+- +. ... |+.+..---.++-++-|+-+++.|+ .+.++ .+.+.+|-|+|-.|+
T Consensus 47 ~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~ 126 (412)
T COG5187 47 HLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYC 126 (412)
T ss_pred HHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 3566777777775555544322 11 111 3444333333455777888877772 22222 245789999999999
Q ss_pred hcCCHHHHHHHHHHH
Q 022783 264 KLNQVKAGLSALEDA 278 (292)
Q Consensus 264 kLgq~eeALe~LekA 278 (292)
..++.+.+.+.|.+-
T Consensus 127 qi~D~~ng~~~~~~~ 141 (412)
T COG5187 127 QIMDIQNGFEWMRRL 141 (412)
T ss_pred HHhhhhhHHHHHHHH
Confidence 999999999887654
No 377
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.94 E-value=63 Score=32.44 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCC--ccchhHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPT--PEESSVASYNVACCYSKL--NQVKAGLSALED 277 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~--~~d~a~a~YN~AccyakL--gq~eeALe~Lek 277 (292)
..+..+++.++|..|+..|++.+.-.+. .......+.++|-||..= -++++|.+.|++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4566778888888888888888855432 223345677777777654 356788888873
No 378
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.34 E-value=39 Score=31.73 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHc-----CCCCccchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcc
Q 022783 231 YEVAREKFESVLG-----SKPTPEESSVASYNVACCYSK-LNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 231 YeeAIe~fekALe-----ldP~~~d~a~a~YN~Accyak-Lgq~eeALe~LekAIelG~~ 284 (292)
-+.|.+.|++|++ +.|.++-.--+.-|-+.+|+. +++.++|+....+|++-...
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4578888888884 557655554457777777665 59999999887777766544
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.61 E-value=1.7e+02 Score=26.65 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=51.0
Q ss_pred hhHHHHHhhHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC-------CHHHHH
Q 022783 204 NYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-------QVKAGL 272 (292)
Q Consensus 204 ~Y~kkk~lk~~~~~~~n~G~~L~k----~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg-------q~eeAL 272 (292)
.++++....-.....+++|..+.. ..|+.+|+.+|++|-+..-. +...+.++++.+|..=. +...|+
T Consensus 98 ~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~--~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 98 DWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV--EAALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred HHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 555555555555566788888876 45899999999999876432 11233677777766631 223677
Q ss_pred HHHHHHHHhCc
Q 022783 273 SALEDALLAGY 283 (292)
Q Consensus 273 e~LekAIelG~ 283 (292)
..+.+|-+.|.
T Consensus 176 ~~~~~aa~~~~ 186 (292)
T COG0790 176 YLYRKAAELGN 186 (292)
T ss_pred HHHHHHHHhcC
Confidence 77777766663
No 380
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=47.94 E-value=50 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.382 Sum_probs=43.1
Q ss_pred ecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccc-cCcccccccchhhHHHHh-hccCCc-eEEEEee
Q 022783 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTMYTI-RQRVGP-LLMKMQK 167 (292)
Q Consensus 91 l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~-fg~e~w~a~~~g~~~~ai-~~r~g~-v~l~l~r 167 (292)
+.||.-+.++ ||||..|.+++-| .|++++||.|+++-.. |. ..++.+.-+ .+..|+ |+++.+|
T Consensus 121 a~~pv~~~y~-----gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~-------s~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 121 AGKPVEVTYA-----GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT-------SSDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred cCCceEEEEe-----eEEEEEccCCcch--hceeccCCeEEeeCCeecC-------CHHHHHHHHhccCCCCeEEEEEEe
Confidence 3455544443 7999999888775 4789999999998742 43 333323333 355555 4778887
Q ss_pred ccCC
Q 022783 168 RYGK 171 (292)
Q Consensus 168 ~~~~ 171 (292)
..++
T Consensus 187 ~~~~ 190 (342)
T COG3480 187 HNET 190 (342)
T ss_pred ccCC
Confidence 5555
No 381
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.94 E-value=1.5e+02 Score=29.73 Aligned_cols=123 Identities=13% Similarity=-0.075 Sum_probs=72.1
Q ss_pred hhccCCceEEE-EeeccCCccccccccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHH---HHHHHHHHHcC
Q 022783 154 IRQRVGPLLMK-MQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQD---LREGLQLYRTG 229 (292)
Q Consensus 154 i~~r~g~v~l~-l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~---~n~G~~L~k~g 229 (292)
.+.++|.-.+. ++-||--+. ..|...++.+||.++...+...+++.--..-+......++. +-+|-.+-..-
T Consensus 110 gkv~~GTE~l~~~~nP~~v~~----~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f 185 (380)
T TIGR02710 110 GRVIPGTERLIEPSDPYNVEG----NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF 185 (380)
T ss_pred CcccCCceeccccCCHHHHHH----HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc
Confidence 35666766665 333332222 24555688999999999999988875322211111122222 34455555677
Q ss_pred CHHHHHHHHHHHH-----------------------cCCCCcc----------------chhHHHHHHHHHHHhcCCHHH
Q 022783 230 KYEVAREKFESVL-----------------------GSKPTPE----------------ESSVASYNVACCYSKLNQVKA 270 (292)
Q Consensus 230 dYeeAIe~fekAL-----------------------eldP~~~----------------d~a~a~YN~AccyakLgq~ee 270 (292)
+|++|++.+++.+ .+.|... -...+++| |.--+..|+|+.
T Consensus 186 d~~~A~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n-a~rr~~~~ry~d 264 (380)
T TIGR02710 186 EHEEALDYLNDPLPERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLAN-AERRATQGRYDD 264 (380)
T ss_pred CHHHHHHHHhhccchhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHH-HHHHHHccCHHH
Confidence 8888888887211 1112200 11234555 555668999999
Q ss_pred HHHHHHHHHHh
Q 022783 271 GLSALEDALLA 281 (292)
Q Consensus 271 ALe~LekAIel 281 (292)
|+.-+-+|+|+
T Consensus 265 a~~r~yR~~e~ 275 (380)
T TIGR02710 265 AAARLYRALEL 275 (380)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 382
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=45.62 E-value=20 Score=38.14 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=51.4
Q ss_pred CC---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783 93 QP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (292)
Q Consensus 93 KP---lGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~ 168 (292)
|| +|+.+.-.-||-.+|..+.++.-|+....|..||.|+-+-.--+. =|.-+ -+...++....-|.+.|+++
T Consensus 210 kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvV-gwqlk---~vV~sL~~~~sgi~l~lkKr 284 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVV-GWQLK---VVVSSLRETPAGIELTLKKR 284 (638)
T ss_pred CcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccc-cchhH---hHHhhcccCcccceeeeecc
Confidence 88 999999999999999999999999999999999999987642111 13332 23445554444454545443
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.08 E-value=1.1e+02 Score=30.34 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-CCCCccchhHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSK--LNQVKAGLSALEDALLA 281 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALe-ldP~~~d~a~a~YN~Accyak--Lgq~eeALe~LekAIel 281 (292)
+.++..+|..++|..|...|+..+. +.++. . ...+.+++-+|.. .-++++|.+.+++.++.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4778889999999999999999887 45542 2 3467888877765 45678999999988664
No 384
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.62 E-value=32 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 231 YeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
.++|+....+|++.|- .|++++|+..+..||+
T Consensus 3 l~~Ai~lv~~Av~~D~------------------~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKDQ------------------RGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHH
Confidence 4567777777765543 3555555555555554
No 385
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.50 E-value=1.5e+02 Score=28.85 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCC---ccchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVKAGLSALED 277 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~---~~d~a~a~YN~AccyakLgq~eeALe~Lek 277 (292)
++++-.+.+..+.++||..|++++++=.+ .+.....+--.+.+|.+++++++|-..+.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 45555556667777777777777743211 112233344455667777777666555544
No 386
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.36 E-value=46 Score=27.94 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 232 eeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
-.|+++|.++..+.|+ .+..+|++|-=+-.-.-|++++.-|++++..-
T Consensus 61 l~sve~~s~a~~Lsp~---~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPD---SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChh---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 4689999999999996 46788998877666677899999999998653
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.17 E-value=2.8e+02 Score=27.36 Aligned_cols=100 Identities=18% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhhH-HHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-C-----------
Q 022783 180 EKEIIRAERNSGVISNRVREIQMQNYM-KKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-P----------- 246 (292)
Q Consensus 180 e~~~~~a~rN~GvI~~~l~eiqea~Y~-kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeld-P----------- 246 (292)
|...++.+||.++...+...+..-.-. ..... -+....+-+|-.+-..-+|++|.+.++..+... +
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 344678999999999998888774321 11110 112233345555566788888888888766321 0
Q ss_pred ------------C------cc------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 247 ------------T------PE------ESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 247 ------------~------~~------d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
. .. -...+|.| |-=-+..|+|+.|+.-+=+|+|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~N-A~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQKKLYYALLADLLAN-AERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHhhccchhhhhccccccHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 00 00122333 44456789999999999999886
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.00 E-value=1.1e+02 Score=30.35 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
+..+.+.|.|.+|+..-+++|.++|-++ .-|.-+-..|+.+|+--.|+.++++=
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e---~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSE---QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhh---HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445678999999999999999999642 23666677899999988888888763
No 389
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=42.96 E-value=34 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=27.0
Q ss_pred ceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeccccC
Q 022783 95 YGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (292)
Q Consensus 95 lGl~~~~~-~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg 138 (292)
-|.++|.. ..| |.+.+-|. +.|.+++||.|++=++ +|
T Consensus 2 ~g~ViE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~-~G 40 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIV------QNGTLKKGDVIVAGGT-YG 40 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEE------EcCeEecCCEEEECCc-cc
Confidence 36777776 334 77788887 5677999999998653 44
No 390
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.74 E-value=81 Score=28.73 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHc----CCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 224 QLYRTGKYEVAREKFESVLG----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 224 ~L~k~gdYeeAIe~fekALe----ldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+-..-.+++|++.|--||- .+.++...+.++-.+|-+|-.+|+.+.....+.+|++.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~ 147 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF 147 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 34456788899998888882 33333355778999999999999966666666666543
No 391
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.29 E-value=56 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHcCC
Q 022783 231 YEVAREKFESVLGSK 245 (292)
Q Consensus 231 YeeAIe~fekALeld 245 (292)
+++|+....+|++.+
T Consensus 5 ~~~A~~li~~Av~~d 19 (77)
T smart00745 5 LSKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666665444
No 392
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=39.85 E-value=32 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 232 eeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
++|+..+.+|++.+- .|+|++|+.+|..||+.
T Consensus 4 ~~A~~l~~~Ave~d~------------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE------------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHHH
Confidence 456666666665543 27777777777777664
No 393
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.54 E-value=1.1e+02 Score=29.86 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc----CCCCccchhHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 022783 213 ERREQDLREGLQLYRT-GKYEVAREKFESVLG----SKPTPEESSVASYNVACC-YSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 213 ~~~~~~~n~G~~L~k~-gdYeeAIe~fekALe----ldP~~~d~a~a~YN~Acc-yakLgq~eeALe~LekAIe 280 (292)
+++...+.++...+++ ..+=-|-+.|++|.- ++.= .+ ..-+|++||| |...|..+.|-.+|++|-+
T Consensus 48 eKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl-sE-vvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 48 EKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL-SE-VVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 3344566666655554 334445555555542 2111 02 3457788777 6667777777777777633
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.98 E-value=34 Score=38.97 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 255 SYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 255 ~YN~AccyakLgq~eeALe~LekA 278 (292)
|-+.|..|.+.|+.++|++++..+
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHh
Confidence 445677888999999999998766
No 395
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=38.84 E-value=95 Score=27.10 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCc--------cch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTP--------EES----SVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~--------~d~----a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
.+|...++++++-.+|-.|++||.+-.+. +|. -....|+|-.+-.+|+-+-.|+.|+-|=|
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 67888999999999999999999432211 111 23478999999999999999999987743
No 396
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.77 E-value=1.8e+02 Score=29.04 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783 218 DLREGLQLYRTGKY-EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY 290 (292)
Q Consensus 218 ~~n~G~~L~k~gdY-eeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir 290 (292)
.|.+-+.|..+|-- ++.+...+..+..=|+....+..|-=+|......|.++..|..|++||..|-.=.+.||
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR 178 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELR 178 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHH
Confidence 34566666666654 47777888888777875455666878888888899999999999999999966444443
No 397
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=38.56 E-value=1.9e+02 Score=27.99 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
+...++..++..+..++|+..++..+...++.++.-....=+|-.+...|+++-|+..|++-.+.
T Consensus 215 ~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 215 ELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34477899999999999999999998776766666666777888899999999999988876543
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.38 E-value=70 Score=27.62 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~ 268 (292)
+..+..+..++..|+|+-|++..+.++..+|++.+ +..=+|-+|..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~---ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE---ARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHHHh
Confidence 34468888999999999999999999999998633 455566666666543
No 399
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=38.25 E-value=1e+02 Score=33.58 Aligned_cols=60 Identities=18% Similarity=0.071 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC-CCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeld-P~~~d~a~a~YN~AccyakLgq~eeALe~LekAI 279 (292)
..|..|-..|+.+.|-.+|++|...+ |...+.+..|.+-|-.=.+..+++.|+..+++|.
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 44444455566666666666666543 2223344556555555555556666666666654
No 400
>PRK03760 hypothetical protein; Provisional
Probab=37.92 E-value=52 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=24.8
Q ss_pred cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEE
Q 022783 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131 (292)
Q Consensus 92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~ 131 (292)
-+|.- +-....+-.||-|+..| -+++.| |++||+|.
T Consensus 78 ~~P~~--~~~~~~~a~~VLEl~aG-~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 78 LKPWR--IYVPKKPARYIIEGPVG-KIRVLK-VEVGDEIE 113 (117)
T ss_pred CCCcc--ccCCCccceEEEEeCCC-hHHHcC-CCCCCEEE
Confidence 36653 22334567889998755 556677 99999995
No 401
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.75 E-value=91 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~ 248 (292)
.+.+|..|...|+++++.+++-.||-+.|.+
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 3589999999999999999999999999975
No 402
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=37.63 E-value=3.3e+02 Score=25.17 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 229 gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
|+ ++|...|.++-.. |.. +.+.+.|-+|..|.+ .+.++|+..|-+|+++--.
T Consensus 121 ~d-~~A~~~fL~~E~~-~~l-~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 121 GD-QEALRRFLQLEGT-PEL-ETAELQYALATYYTK-RDPEKTIQLLLRALELSNP 172 (203)
T ss_pred Cc-HHHHHHHHHHcCC-CCC-CCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCC
Confidence 55 7888888776543 443 335679999999996 6799999999999998543
No 403
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.60 E-value=1.4e+02 Score=25.94 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCCc----cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVL-GSKPTP----EESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekAL-eldP~~----~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
..+..++.+.+.|+.++|.+....+= +++=.. -......-+.|..+...|++.+|-..|..|++
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45688999999999999999887653 222110 01133467899999999999999999999984
No 404
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=36.88 E-value=78 Score=24.88 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.2
Q ss_pred ceEEEEecCCce---eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCccccccc-chhhH
Q 022783 85 EEYEVEIEQPYG---LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA-EYGRT 150 (292)
Q Consensus 85 ~~~~v~l~KPlG---l~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~-~~g~~ 150 (292)
.+.+=++.+.|| +.+. -.||.+...-|.-...=.+- .|.+||+|+- ++||.+ .-|++
T Consensus 7 ~e~~g~V~e~L~~~~f~v~-~edg~~~~ahI~GKmr~~~i-~I~~GD~V~V-------e~~~~d~~kg~I 67 (75)
T COG0361 7 IEMEGTVIEMLPNGRFRVE-LENGHERLAHISGKMRKNRI-RILPGDVVLV-------ELSPYDLTKGRI 67 (75)
T ss_pred cEEEEEEEEecCCCEEEEE-ecCCcEEEEEccCcchheeE-EeCCCCEEEE-------EecccccccccE
Confidence 456667777777 3333 46887777777755443333 3889999986 677766 44433
No 405
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=36.61 E-value=50 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=25.6
Q ss_pred EecCCce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 022783 90 EIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (292)
Q Consensus 90 ~l~KPlG--l~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~ 132 (292)
.+.+++| +.--+..||..+...|+.. --+.--|+.||.|+.
T Consensus 5 ~V~~~lG~~~~~V~~~dg~~~l~~i~gK--~Rk~iwI~~GD~VlV 47 (78)
T cd04456 5 RVLRMLGNNRHEVECADGQRRLVSIPGK--LRKNIWIKRGDFLIV 47 (78)
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEchh--hccCEEEcCCCEEEE
Confidence 3444444 3333446888888888743 334445888998887
No 406
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=36.24 E-value=1.3e+02 Score=30.28 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHcCCCCc-----------------c-------------------------chhHHHHHHHHHHHhcCC
Q 022783 230 KYEVAREKFESVLGSKPTP-----------------E-------------------------ESSVASYNVACCYSKLNQ 267 (292)
Q Consensus 230 dYeeAIe~fekALeldP~~-----------------~-------------------------d~a~a~YN~AccyakLgq 267 (292)
..++||+.|.+|.+++|+. . ...-.+--.+-|....|+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 4788999999999988873 0 001122334556677889
Q ss_pred HHHHHHHHHHHHHhCccChh
Q 022783 268 VKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 268 ~eeALe~LekAIelG~~Df~ 287 (292)
+++|+.++++++++-.+.|.
T Consensus 321 ~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 321 YEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHhhcCCcchh
Confidence 99999999999988776654
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.22 E-value=1e+02 Score=30.49 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=35.9
Q ss_pred HcCCHHHHHHHHHHHHcCCCCccch-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 227 RTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 227 k~gdYeeAIe~fekALeldP~~~d~-a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
++.+.++|+..|+++|+++|.-.+- ..++-..--.+.++++|++-++.+.+-
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3457899999999999999864332 123444455677778887777766553
No 408
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=35.67 E-value=50 Score=33.71 Aligned_cols=74 Identities=22% Similarity=0.378 Sum_probs=51.5
Q ss_pred EEEEecC----CceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCc
Q 022783 87 YEVEIEQ----PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (292)
Q Consensus 87 ~~v~l~K----PlGl~~~~~--~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~ 160 (292)
-.|.+-| =|||.+.-+ |..-|.|..|-+|-.||.++.+-+||.|+.|. |..+-++ .-.+...+++.-...
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVN---G~dL~~A-tHdeAVqaLKraGke 161 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVN---GEDLRDA-THDEAVQALKRAGKE 161 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEec---chhhhhc-chHHHHHHHHhhCce
Confidence 4566655 378888776 44589999999999999999999999999875 4444433 233455566644444
Q ss_pred eEEE
Q 022783 161 LLMK 164 (292)
Q Consensus 161 v~l~ 164 (292)
|.|.
T Consensus 162 V~le 165 (506)
T KOG3551|consen 162 VLLE 165 (506)
T ss_pred eeee
Confidence 4443
No 409
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=35.26 E-value=39 Score=34.45 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 253 VASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 253 ~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
.++-|+|..+-++-++.+++..++-.++
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~ 111 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLG 111 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 4555666666666666666665555443
No 410
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=34.79 E-value=59 Score=31.18 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=38.7
Q ss_pred cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeeccC
Q 022783 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (292)
Q Consensus 92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~~~ 170 (292)
+|=+|.+|+.+.||..| +++| ++.||..+++.- -.+=+-+..-+.|..|+.- .++.|++.|.-.
T Consensus 204 eki~Gyr~~pgkd~slF----------~~sg-lq~GDIavaiNn---ldltdp~~m~~llq~l~~m-~s~qlTv~R~G~ 267 (275)
T COG3031 204 EKIEGYRFEPGKDGSLF----------YKSG-LQRGDIAVAINN---LDLTDPEDMFRLLQMLRNM-PSLQLTVIRRGK 267 (275)
T ss_pred CceEEEEecCCCCcchh----------hhhc-CCCcceEEEecC---cccCCHHHHHHHHHhhhcC-cceEEEEEecCc
Confidence 34456666665555444 5777 999999999763 2233333444556666543 347778877543
No 411
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=34.70 E-value=1.1e+02 Score=24.99 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=30.9
Q ss_pred cceEEEEecCCce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 022783 84 YEEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (292)
Q Consensus 84 ~~~~~v~l~KPlG--l~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~ 132 (292)
-++....+.+.+| +.--+..||..++..|... --+.--|.+||.|+.
T Consensus 20 e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK--~Rk~IwI~~GD~VlV 68 (100)
T PRK04012 20 EGEVFGVVEQMLGANRVRVRCMDGVERMGRIPGK--MKKRMWIREGDVVIV 68 (100)
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchh--hcccEEecCCCEEEE
Confidence 3556777777776 3333557888888877743 233445888998876
No 412
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.67 E-value=1.3e+02 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHH----HHHhCcc
Q 022783 250 ESSVASYNVACCYSKLNQVKAGLSALED----ALLAGYE 284 (292)
Q Consensus 250 d~a~a~YN~AccyakLgq~eeALe~Lek----AIelG~~ 284 (292)
+...+|-|+|-.|+..|+.+.|++.|.+ ++.+|..
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k 140 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK 140 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 4577899999999999999999988764 5666644
No 413
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.66 E-value=38 Score=34.92 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 254 ASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 254 a~YN~AccyakLgq~eeALe~LekA 278 (292)
+..|++.||-.++++++|+..|+++
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~g 48 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKG 48 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHH
Confidence 3444455555555555555555444
No 414
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=34.60 E-value=31 Score=28.06 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=17.4
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEE
Q 022783 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVL 131 (292)
Q Consensus 103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~ 131 (292)
..+.-||-|+.+| .+++-| |++||+|.
T Consensus 79 ~~~a~~vLE~~aG-~~~~~~-i~~Gd~v~ 105 (108)
T PF02643_consen 79 YKPARYVLELPAG-WFEKLG-IKVGDRVR 105 (108)
T ss_dssp CCEECEEEEEETT-HHHHHT---TT-EEE
T ss_pred CCccCEEEEcCCC-chhhcC-CCCCCEEE
Confidence 3556788888765 556677 99999986
No 415
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=34.06 E-value=99 Score=28.39 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC
Q 022783 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAG 282 (292)
Q Consensus 228 ~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg---q~eeALe~LekAIelG 282 (292)
.++-+++++.+...|.=++.......+.+|-|.++...| .+++|++..+++|+-|
T Consensus 192 ~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~a~e~i~sG 249 (252)
T PF00591_consen 192 GGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEKAREAIDSG 249 (252)
T ss_dssp HSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 356688888888888665543113457889999988887 7889999999998876
No 416
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=1.6e+02 Score=29.56 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 217 ~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
+....+...-+.++|++|+..|..||+
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 344555666677888888888887774
No 417
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.66 E-value=2.8e+02 Score=28.01 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREK--FESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~--fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekA 278 (292)
+..+..+.-.|+-|+|..|-++ |-+++-.+|+. ++..+.+.+=..-..+-+|+.|+++|.+-
T Consensus 130 ~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~-n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDR-NYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcch-hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445677777999999999875 45666555542 34456666667777888999999999876
No 418
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.46 E-value=63 Score=31.06 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=35.9
Q ss_pred hhHHHHHhhHhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 204 ~Y~kkk~lk~~~-~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~ 248 (292)
-|.++.++-++- ..+|.+|.---+.|+++.|...|++.|+++|..
T Consensus 17 ly~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 17 LYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 565666554443 456788888899999999999999999999984
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.36 E-value=76 Score=18.41 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHcCCCCc
Q 022783 229 GKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 229 gdYeeAIe~fekALeldP~~ 248 (292)
|+++.|...|++++...|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 1 GDIERARKIYERALEKFPKS 20 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC
Confidence 57889999999999988853
No 420
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.92 E-value=1.8e+02 Score=30.16 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=30.7
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 205 Y~kkk~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
|...+..-+.++-.+++|+.+-+.+++++|+..|+++|.
T Consensus 12 ~a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 12 TAQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 333444444456677999999999999999999999994
No 421
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=32.81 E-value=57 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=29.2
Q ss_pred ceeEEeeeC-CC-CeEEEEeCCCCCcccccCcccCCEEEEeccccC--ccccccc
Q 022783 95 YGLKFAKGR-DG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG--TEIWPAA 145 (292)
Q Consensus 95 lGl~~~~~~-~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg--~e~w~a~ 145 (292)
-|+++|-.. .| |.+.+-|. +.|.+++||.|++=++ +| ..||+..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~-~gkVr~l~d~~ 49 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLV------QNGTLKVGDVLVAGTT-YGKVRAMFDEN 49 (95)
T ss_pred eEEEEEEEecCCCCccEEEEE------EcCeEeCCCEEEEccc-ccEEEEEECCC
Confidence 367777763 34 67777777 4567999999998653 55 2344443
No 422
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=32.68 E-value=1.4e+02 Score=29.92 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=44.0
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHcCCCC-ccch----hHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCccChh
Q 022783 219 LREGLQLYR---TGKYEVAREKFESVLGSKPT-PEES----SVASYNVACC--YSKLNQVKAGLSALEDALLAGYEDFK 287 (292)
Q Consensus 219 ~n~G~~L~k---~gdYeeAIe~fekALeldP~-~~d~----a~a~YN~Acc--yakLgq~eeALe~LekAIelG~~Df~ 287 (292)
+..|.+|.+ .|+.++|+..+..+|..+.. ..|. +-+|-.+..- +......++|+..|.+|.++-.+-|.
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 477888887 99999999999997754432 2221 2222222221 22344578899999999877754443
No 423
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=32.67 E-value=1.4e+02 Score=33.37 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=47.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH-cCCCCccchhHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCccChhhh
Q 022783 223 LQLYRTGKYEVAREKFESVL-GSKPTPEESSVASYNV-ACCYSKLNQVKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 223 ~~L~k~gdYeeAIe~fekAL-eldP~~~d~a~a~YN~-AccyakLgq~eeALe~LekAIelG~~Df~~I 289 (292)
.++-..++|++|++.+..-+ +..+.. ....-|+ --.+.++++|.+-.+.+.+.++.|.|||+.+
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~---~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~ 263 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSA---NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIY 263 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHH
Confidence 34456899999999996655 343431 1223344 4568889999999999999999999997664
No 424
>PRK10316 hypothetical protein; Provisional
Probab=32.49 E-value=2e+02 Score=26.81 Aligned_cols=60 Identities=18% Similarity=0.015 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------H-cCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESV---------L-GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekA---------L-eldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
..++..+|...+.|+..+|++...-+ + -+++. ..--+.|..+.+.|+|-+|-..|.+|.+
T Consensus 128 ~~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT-----~~~V~~A~~ll~~gkyyeA~~aLk~a~d 197 (209)
T PRK10316 128 EAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQT-----RNAVADAQKLLDKGKYYEANLALKGAED 197 (209)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhh-----HHHHHHHHHHHhCCChhHHHHHHHhhcc
Confidence 46688999999999999999876532 2 34443 2467889999999999999999998854
No 425
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=32.48 E-value=2.1e+02 Score=33.78 Aligned_cols=63 Identities=17% Similarity=0.005 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcc
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~ 284 (292)
..+.-+|-+-++|++|.+.|+..++-=-+ ....|--.+-.+.++++-++|-..|.+||+.=+.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 35667778889999999999999942222 2346999999999999999999999999987544
No 426
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.33 E-value=1.5e+02 Score=26.34 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHH
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK 269 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~e 269 (292)
.+..|..+...|+|.+|+..|....+-.+.. ...--=+|+|+.-+|+.+
T Consensus 47 d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 47 DMFDGWLLIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGDAE 95 (153)
T ss_pred chhHHHHHHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCChH
Confidence 3578999999999999999999999877653 223344689999988764
No 427
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.04 E-value=1.5e+02 Score=32.47 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
++.+-|.++.+.+.|++.|++|-+.+|.+ .......-|....-++-++||.++.+-...
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~---~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQS---PLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 66777888999999999999999999974 345677788888899999999988765443
No 428
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=31.96 E-value=74 Score=25.60 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=15.7
Q ss_pred eEEEEeCCCCCcccccCcccCCEEEEe
Q 022783 107 TYIDAIAPGGSADKTGMFQVGDKVLAT 133 (292)
Q Consensus 107 v~V~~v~~ggnA~k~g~i~vGD~l~~~ 133 (292)
..|.+|.+|.. .....+++||+|+.-
T Consensus 38 G~VvavG~g~~-~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 38 AEVVAVGKLDD-EEDFDIKVGDKVIFS 63 (91)
T ss_pred EEEEEECCCCc-cccccccCCCEEEEc
Confidence 34555555432 223459999999863
No 429
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=31.50 E-value=91 Score=24.03 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=10.7
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 022783 263 SKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 263 akLgq~eeALe~LekAIel 281 (292)
-..|++++|+.++.+||+.
T Consensus 17 D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3346666666666666543
No 430
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.34 E-value=1e+02 Score=22.92 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 022783 265 LNQVKAGLSALEDALL 280 (292)
Q Consensus 265 Lgq~eeALe~LekAIe 280 (292)
.|++++|+..+.+|++
T Consensus 19 ~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 19 DGNYEEALELYKEALD 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3555555555555544
No 431
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=30.84 E-value=73 Score=26.21 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=14.0
Q ss_pred EEEeCCCCCcccccCcccCCEEEE
Q 022783 109 IDAIAPGGSADKTGMFQVGDKVLA 132 (292)
Q Consensus 109 V~~v~~ggnA~k~g~i~vGD~l~~ 132 (292)
|.+|.+|..-. ...|++||+|+.
T Consensus 49 VvAVG~G~~~~-~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 49 VVAVAAATKDW-TPTVKVGDTVLL 71 (100)
T ss_pred EEEECCCCccc-cceecCCCEEEE
Confidence 44455553211 335999999997
No 432
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=30.80 E-value=4.1e+02 Score=25.15 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred ceEEEEec--CCceeEEeee----CCCCeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhccC
Q 022783 85 EEYEVEIE--QPYGLKFAKG----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (292)
Q Consensus 85 ~~~~v~l~--KPlGl~~~~~----~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~ 158 (292)
+.+..++. ++.|+.+.-. .+|-+-+.++..+-.-.-...+++||.|.+.=-.+. ...
T Consensus 10 diV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD-----------------~~k 72 (262)
T PRK03987 10 ELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVD-----------------PRK 72 (262)
T ss_pred CEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEe-----------------ccc
Confidence 33443333 6788776653 234445555554433222335799999988432111 224
Q ss_pred CceEEEEeeccCCccccccccHHHHHHHhhccccchhhHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHH
Q 022783 159 GPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREK 237 (292)
Q Consensus 159 g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~ 237 (292)
+.+.|.+.+-. . . ..++...-..+...+.+-|.++.+..- ...++.+ ..|-.|++. |..+.+.
T Consensus 73 ~~I~LSlK~v~----~-~--e~~~~~~~~~~~~~~~~il~~~a~~~~-------~~~e~~~~~~~~~l~~~--yg~~y~a 136 (262)
T PRK03987 73 GHIDLSLKRVN----E-H--QRREKIQEWKNEQKADKWLELAAEKLG-------KSLEEAWEEVGYKLEDE--FGDLYDA 136 (262)
T ss_pred CeEEEEEEecc----c-c--hHHHHHHHHHHHhhHhhHHHHHHHHcC-------CCHHHHHHHHHHHHHHH--hCcHHHH
Confidence 56777776522 1 1 111122322333445555555544311 1112222 333334333 6677778
Q ss_pred HHHHHcCCCC
Q 022783 238 FESVLGSKPT 247 (292)
Q Consensus 238 fekALeldP~ 247 (292)
|+.|...+|+
T Consensus 137 f~~~~~~~~~ 146 (262)
T PRK03987 137 FEEAAIEGEE 146 (262)
T ss_pred HHHHHhcChh
Confidence 8777765554
No 433
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.23 E-value=1.1e+02 Score=23.84 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHHHHH
Q 022783 264 KLNQVKAGLSALEDALL 280 (292)
Q Consensus 264 kLgq~eeALe~LekAIe 280 (292)
+.|+|++|+.++.+||+
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 33555555555555544
No 434
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=29.93 E-value=1.1e+02 Score=31.11 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHH-cCCCCccchhHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCccChhhh
Q 022783 231 YEVAREKFESVL-GSKPTPEESSVASYNVACCYSKLNQ------------VKAGLSALEDALLAGYEDFKVI 289 (292)
Q Consensus 231 YeeAIe~fekAL-eldP~~~d~a~a~YN~AccyakLgq------------~eeALe~LekAIelG~~Df~~I 289 (292)
...|++++++|. +-+|. .|.++|-++..+|+ |++|-+.|.+|=..+-.-|+.|
T Consensus 334 ~~~Al~yL~kA~d~ddPe------tWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~di 399 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPE------TWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDI 399 (404)
T ss_dssp HHHHHHHHHHHHHS--TT------HHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHH
T ss_pred HHHHHHHHHHhhccCChh------HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 456777777777 45564 59999999999884 5678888888888876666655
No 435
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=29.86 E-value=82 Score=26.34 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=25.0
Q ss_pred eeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeccccC
Q 022783 96 GLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (292)
Q Consensus 96 Gl~~~~~-~~G-~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg 138 (292)
|.++|-. ..| |..++-|.- .|.+++||+|+..+. +|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~------~GtL~~GD~Iv~g~~-~G 40 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILY------DGTLREGDTIVVCGL-NG 40 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEE------CCeEecCCEEEEccC-CC
Confidence 5566654 334 777777874 456999999998773 44
No 436
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=29.34 E-value=78 Score=34.63 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEEEeccc
Q 022783 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (292)
Q Consensus 103 ~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~ 136 (292)
+-|-..|..|.++|-|+|. ++.||+|+++-.+
T Consensus 301 ~tgmLvV~~vL~~gpa~k~--Le~GDillavN~t 332 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEKK--LEPGDILLAVNST 332 (955)
T ss_pred cceeEEEEEeccCCchhhc--cCCCcEEEEEcce
Confidence 4578899999999999976 7999999999853
No 437
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=29.29 E-value=1.3e+02 Score=23.64 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=32.3
Q ss_pred ceEEEEecCCce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 022783 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (292)
Q Consensus 85 ~~~~v~l~KPlG--l~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~ 132 (292)
++....+.+.+| +.--+..||..++..|...= -+.--|+.||.|+-
T Consensus 5 ~q~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~--Rk~iwI~~GD~VlV 52 (83)
T smart00652 5 GQEIAQVVKMLGNGRLEVMCADGKERLARIPGKM--RKKVWIRRGDIVLV 52 (83)
T ss_pred CcEEEEEEEEcCCCEEEEEECCCCEEEEEEchhh--cccEEEcCCCEEEE
Confidence 446677777777 33345579999998888543 34556899999887
No 438
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=28.78 E-value=2.1e+02 Score=32.42 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHcCCHHHHHHHHHHHHcCCC---------Cc----------cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 225 LYRTGKYEVAREKFESVLGSKP---------TP----------EESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 225 L~k~gdYeeAIe~fekALeldP---------~~----------~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
+-..|+.+.||..|+.|-..=. +. .+ ..+.|.+|.-|-..|++.+|+.-+.+|-.
T Consensus 922 lES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3456999999999998864211 11 12 34799999999999999999999998843
No 439
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.72 E-value=79 Score=31.53 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=32.7
Q ss_pred HhhHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 022783 210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (292)
Q Consensus 210 ~lk~~~~~~~n~G~~L~k~gdYeeAIe~fekALeldP~~ 248 (292)
.+.+++...+..|+..-+.|..-+||..|..|+.+-|+.
T Consensus 14 ~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~di 52 (366)
T KOG2997|consen 14 PLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDI 52 (366)
T ss_pred hHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchH
Confidence 344455667789999999999999999999999999874
No 440
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=70 Score=27.36 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=25.0
Q ss_pred cCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEec
Q 022783 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (292)
Q Consensus 92 ~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~S 134 (292)
-+|....--....+.-||-|+..| -+++.| |+|||+|.-..
T Consensus 81 ~~P~~~~~~~~~~~~~yvLEl~~G-~~~~~~-i~vGd~v~~~~ 121 (126)
T COG1430 81 LVPWSTYPCKSYGPVRYVLELPAG-WAARLG-IKVGDRVEFRP 121 (126)
T ss_pred ccccccCCCCCCCCccEEEEecCC-chhhcC-CccCCEEEecc
Confidence 344444333333334588888754 455566 99999997643
No 441
>PRK10941 hypothetical protein; Provisional
Probab=28.14 E-value=1.1e+02 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.032 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccChhhhh
Q 022783 252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKVIY 290 (292)
Q Consensus 252 a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df~~Ir 290 (292)
.-..-|+=.+|...++++.|+.+++..+.+.++|...||
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~R 219 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIR 219 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 446889999999999999999999999999999988877
No 442
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.10 E-value=1.2e+02 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHcCC
Q 022783 231 YEVAREKFESVLGSK 245 (292)
Q Consensus 231 YeeAIe~fekALeld 245 (292)
.+.|+..+.+|++.+
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666544
No 443
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=1.4e+02 Score=31.04 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=45.9
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHHHhhcc-CCceEEEEeeccCC
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRYGK 171 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~~~~ 171 (292)
++.|.+|-|++-+...+ ++.||+|+++.. -+....+.++.+|+.- .++...+|.|+..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng------~~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNG------KPVKNLKHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECC------EEeechHHHHHHHHhcCcCceEEEEEecCcc
Confidence 69999999999998777 999999999774 3666777788888843 45666677776554
No 444
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=27.13 E-value=93 Score=24.96 Aligned_cols=11 Identities=55% Similarity=0.622 Sum_probs=9.0
Q ss_pred CcccCCEEEEe
Q 022783 123 MFQVGDKVLAT 133 (292)
Q Consensus 123 ~i~vGD~l~~~ 133 (292)
.|++||+|+.-
T Consensus 58 ~vk~GD~Vlf~ 68 (95)
T PRK00364 58 DVKVGDKVLFG 68 (95)
T ss_pred ccCCCCEEEEc
Confidence 58999999873
No 445
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=26.39 E-value=5.3e+02 Score=25.51 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=46.2
Q ss_pred hHHHHHHHhhHHHHHhhHhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCc-------------cchhHHHHHHHHH
Q 022783 196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACC 261 (292)
Q Consensus 196 ~l~eiqea~Y~kkk~lk~~~~~~~-n~G~~L~k~gdYeeAIe~fekALeldP~~-------------~d~a~a~YN~Acc 261 (292)
.|-+-||-.+.|+.+.+. ....+ .++....+ -|++|.+.... ..+.. .-.+.+||..|+.
T Consensus 184 mLAQAQE~~~~KAi~~k~-k~sliaKLA~q~a~--~Y~~A~~~l~~---~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~ 257 (353)
T cd09243 184 CTAEAQEVTVARAIELKH-NAGLISALAYETAK--LFQKADDSLSS---LDPEYSGKWRKYLQLKSVFYLAYAYCYHGET 257 (353)
T ss_pred HHHHHHHHHHHHHHHccc-chHHHHHHHHHHHH--HHHHHHHHHHc---CCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666544322 22222 33333322 26777665543 12211 0125678999998
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 022783 262 YSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 262 yakLgq~eeALe~LekAIe 280 (292)
+-..+++-+||..|+.|.+
T Consensus 258 l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 258 LLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred hHhcchHHHHHHHHHHHHH
Confidence 8888999999999998865
No 446
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.11 E-value=4.7e+02 Score=27.91 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=47.7
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 022783 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 226 ~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIelG 282 (292)
.+++.++.+-..|++-|+..|.+ -.+|-+-|-.-..+|+.+.|-..++-||.--
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~---c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPEN---CYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHh---hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 56789999999999999999963 5679999999999999999999999888654
No 447
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=24.89 E-value=61 Score=27.59 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=24.1
Q ss_pred eEEEEecCCceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEec
Q 022783 86 EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (292)
Q Consensus 86 ~~~v~l~KPlGl~~~~~~~G~v~V~~v~~ggnA~k~g~i~vGD~l~~~S 134 (292)
.|+|++. ..||...++.|.+|..= .+++||.|.+=-
T Consensus 23 g~~vtI~---------~~dG~~v~~~IP~GpeL----iV~eG~~V~~dq 58 (118)
T PF01333_consen 23 GYEVTIE---------TSDGETVVETIPAGPEL----IVSEGQSVKADQ 58 (118)
T ss_dssp EEEEEEE---------TTTSEEEEEEEESSS-B----S--TT-EETTT-
T ss_pred CEEEEEE---------CCCCCEEEEecCCCCeE----EEcCCCEEecCC
Confidence 3777764 46899999999999763 488999998733
No 448
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.44 E-value=1.6e+02 Score=33.29 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
-+++|..+...|++.+|+++|..+|-
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~ 1019 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIY 1019 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 35889999999999999999999884
No 449
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=24.12 E-value=2.4e+02 Score=30.91 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=52.0
Q ss_pred HHcCCHHHHHHHHHHHH-cCCCCc--cchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCccCh
Q 022783 226 YRTGKYEVAREKFESVL-GSKPTP--EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (292)
Q Consensus 226 ~k~gdYeeAIe~fekAL-eldP~~--~d~a~a~YN~AccyakLgq~eeALe~LekAIelG~~Df 286 (292)
+.+|++.+-+..|.+|+ ..+|.- .....+|.-.|-.|-..|+++.|-..+++|++..|.--
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 34788999999999999 788862 23367899999999999999999999999999988743
No 450
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.76 E-value=1.8e+02 Score=30.21 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCC
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVL-GSKPT 247 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekAL-eldP~ 247 (292)
...|+.|..+|+.++|.+|++....|| ..+|.
T Consensus 520 ~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG 552 (569)
T PRK04778 520 AEALNEAERLFREYDYKAALEIIATALEKVEPG 552 (569)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCc
Confidence 345788888899999999999998888 68886
No 451
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.75 E-value=2.9e+02 Score=28.70 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=47.6
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHcCCC--Cccc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLY-RTGKYEVAREKFESVLGSKP--TPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~-k~gdYeeAIe~fekALeldP--~~~d-~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.+..|.+|+ +..++++|....++++.+.. +..| ...+.+=++-+|.+.+... |+..|+++|+.
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 368999997 56999999999999987663 3222 1334555578888877776 99999999876
No 452
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.61 E-value=1.8e+02 Score=30.19 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH-cCCCCccchhHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhC
Q 022783 231 YEVAREKFESVL-GSKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDALLAG 282 (292)
Q Consensus 231 YeeAIe~fekAL-eldP~~~d~a~a~YN~Accya-kLgq~eeALe~LekAIelG 282 (292)
..-||.|++.++ ...+.++..+.+++-+|-.|. ...++++|-.+|+||+.+-
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~ 90 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLC 90 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456899999999 666665566778999999877 8899999999999997765
No 453
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=23.38 E-value=1.4e+02 Score=23.87 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=9.5
Q ss_pred CcccCCEEEEec
Q 022783 123 MFQVGDKVLATS 134 (292)
Q Consensus 123 ~i~vGD~l~~~S 134 (292)
.+++||+|+.--
T Consensus 57 ~vk~GD~Vl~~~ 68 (93)
T cd00320 57 SVKVGDKVLFPK 68 (93)
T ss_pred cccCCCEEEECC
Confidence 589999998644
No 454
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=22.92 E-value=1.6e+02 Score=29.68 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=14.3
Q ss_pred ecCCceeEEeeeCCCCeEEEE
Q 022783 91 IEQPYGLKFAKGRDGGTYIDA 111 (292)
Q Consensus 91 l~KPlGl~~~~~~~G~v~V~~ 111 (292)
.=|||||.|... .|.+||..
T Consensus 114 CGRPLGl~f~~~-ggdL~VaD 133 (376)
T KOG1520|consen 114 CGRPLGIRFDKK-GGDLYVAD 133 (376)
T ss_pred cCCcceEEeccC-CCeEEEEe
Confidence 569999999884 34566543
No 455
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.89 E-value=1.4e+02 Score=29.36 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-cCCCCccchhHHHHH---------HHHHHHhcCCHHHHHHHHHHHH
Q 022783 231 YEVAREKFESVL-GSKPTPEESSVASYN---------VACCYSKLNQVKAGLSALEDAL 279 (292)
Q Consensus 231 YeeAIe~fekAL-eldP~~~d~a~a~YN---------~AccyakLgq~eeALe~LekAI 279 (292)
|+++-..|..+. ..||+. -...+..| ++.++..+|+.+.|-+.+++||
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~-l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNA-LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHccCHHH-HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
No 456
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=22.53 E-value=1.6e+02 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVL 242 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekAL 242 (292)
.+.+-+++...+.|+|++|-+...+|=
T Consensus 16 rs~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 16 RSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456678888889999999888887764
No 457
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=22.49 E-value=97 Score=35.19 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCccch---hHHHHHHHHHHHhcC
Q 022783 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLN 266 (292)
Q Consensus 219 ~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~---a~a~YN~AccyakLg 266 (292)
+-.|..+...|+|.+|++.|..|+++--...|. +.|+-.+|+|...++
T Consensus 246 k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 246 KVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 378999999999999999999999654433344 556777778877655
No 458
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=22.21 E-value=1.6e+02 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVLG 243 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekALe 243 (292)
.+.+-+++.+.+.|+|++|-+...+|=+
T Consensus 21 rs~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 21 RTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566888888999999999988887753
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.82 E-value=4.2e+02 Score=27.43 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 022783 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (292)
Q Consensus 218 ~~n~G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLgq~eeALe~LekAIel 281 (292)
.-+.|.=|..-|+.+.|+.+|.++=+.+-+.......|-|.=.+-.-+|+|-+-+....+|..-
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3467777788999999999999988888765445567888888888889888877777777544
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.81 E-value=2.2e+02 Score=26.03 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCC---CccchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022783 233 VAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (292)
Q Consensus 233 eAIe~fekALeldP---~~~d~a~a~YN~AccyakLgq~eeALe~LekAIe 280 (292)
..|+.+++|++.=. ..+....+...+|--|.++|++++|+..|+.+..
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555553111 1234466788999999999999999999999943
No 461
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=21.76 E-value=1.7e+02 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVL 242 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekAL 242 (292)
.+.+-+++...+.|+|++|-+...+|=
T Consensus 18 rs~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 18 RSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456678888889999999988887764
No 462
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.63 E-value=57 Score=25.70 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=24.6
Q ss_pred CcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEee
Q 022783 123 MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (292)
Q Consensus 123 ~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r 167 (292)
.+++||.|+-+|..+|.-+.-.++. --+.. +..+.+++.|
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~----v~vei-~~g~~i~~~r 76 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENT----IVIEL-NDNTEITFSK 76 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCE----EEEEE-CCCeEEEEEh
Confidence 4899999999999999533322222 12222 2336677666
No 463
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.30 E-value=4.5e+02 Score=27.80 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC-CCCccchhHHHHHHHHHHHhcC-C---------------HHHHHHHHHHHHHhC
Q 022783 220 REGLQLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSKLN-Q---------------VKAGLSALEDALLAG 282 (292)
Q Consensus 220 n~G~~L~k~gdYeeAIe~fekALel-dP~~~d~a~a~YN~AccyakLg-q---------------~eeALe~LekAIelG 282 (292)
++-..|.++++|.++-....+==++ -|+ .+...|..|..-++.. + ...|++++.+|++.+
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lpk---SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLPK---SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCCc---hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 7888889999999998777763222 132 3567888877654421 1 245889999999998
Q ss_pred cc
Q 022783 283 YE 284 (292)
Q Consensus 283 ~~ 284 (292)
..
T Consensus 377 PH 378 (539)
T PF04184_consen 377 PH 378 (539)
T ss_pred CC
Confidence 65
No 464
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.23 E-value=5.7e+02 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 022783 255 SYNVACCYSKLN-QVKAGLSALEDALLA 281 (292)
Q Consensus 255 ~YN~AccyakLg-q~eeALe~LekAIel 281 (292)
.-.++--+...| ++++|+.++-+||..
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~V 120 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKV 120 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 345677788889 999999999999976
No 465
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=21.18 E-value=1.1e+02 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.351 Sum_probs=29.0
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeccccCcccccccchhhHHH-HhhccCCceEEEEee
Q 022783 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY-TIRQRVGPLLMKMQK 167 (292)
Q Consensus 106 ~v~V~~v~~ggnA~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~-ai~~r~g~v~l~l~r 167 (292)
..|++.+. .-.+.|++||+|. +|+.-|....+|.+-. .++ .-|.++|+|.-
T Consensus 39 ~~vih~~~-----~~~~~i~~Gd~l~-----i~~~~y~ItaVG~~an~NL~-~LGH~Tl~F~g 90 (117)
T PF03829_consen 39 YCVIHTFN-----ELKGDIKPGDTLI-----IGGQEYTITAVGSVANQNLR-ELGHITLVFDG 90 (117)
T ss_dssp TCEEEE-T-----GGG----TT-EEE-----ETTEEEEEEEE-TTHHHHHH-HHS-EEEE-S-
T ss_pred EEEEEecC-----cccCCcCCCCEEE-----ECCeEEEEEEEhHHHHHHHH-hcCcEEEEECC
Confidence 66777776 2455699999997 7888888888985433 333 46788888754
No 466
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=21.16 E-value=1.8e+02 Score=23.38 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022783 216 EQDLREGLQLYRTGKYEVAREKFESVL 242 (292)
Q Consensus 216 ~~~~n~G~~L~k~gdYeeAIe~fekAL 242 (292)
.+.+.+++...+.|+|++|-+.+.+|=
T Consensus 15 rs~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 15 RSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455677888888889888888887764
No 467
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=20.99 E-value=1.2e+02 Score=26.25 Aligned_cols=92 Identities=8% Similarity=0.160 Sum_probs=50.8
Q ss_pred cccCCEEEEeccc-----cCcccccccchhhHHHHhhcc-CCceEEEEeeccCCccccccccHHHHHHHhhccccchhhH
Q 022783 124 FQVGDKVLATSAV-----FGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197 (292)
Q Consensus 124 i~vGD~l~~~Sa~-----fg~e~w~a~~~g~~~~ai~~r-~g~v~l~l~r~~~~~~~~~~~~e~~~~~a~rN~GvI~~~l 197 (292)
+--+|+|++++-. |.+.+ ....|+++..++.. ++.+.+.=.+..-.+....| +...+|.+-.+|....++
T Consensus 48 lL~~~~l~~vn~L~~~vV~e~~~--~~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E--~r~vWk~yl~~~~fd~Al 123 (147)
T PF05131_consen 48 LLYSDRLIAVNRLNNKVVFEESL--LETGGKILGLCRDPSSNTFWLYSSNSIFEIVINNE--DRDVWKIYLDKGDFDEAL 123 (147)
T ss_pred EEeCCEEEEEEecCCcEEEEEEe--ccCCcceeeEEEcCCCCeEEEEeCCeeEEEEcCcc--hHHHHHHHHhcCcHHHHH
Confidence 4457888888864 33333 34555666666644 34444444444444433222 234699888888888777
Q ss_pred HHHHHHhhHHHHHhhHhHHHHH
Q 022783 198 REIQMQNYMKKKEQKERREQDL 219 (292)
Q Consensus 198 ~eiqea~Y~kkk~lk~~~~~~~ 219 (292)
+.-+.....+...+..+++.+|
T Consensus 124 ~~~~~~~~~~d~V~~~qa~~lf 145 (147)
T PF05131_consen 124 QYCKTNPAQRDQVLIKQADHLF 145 (147)
T ss_pred HHccCCHHHHHHHHHHHHHHHh
Confidence 6666544444444444444433
No 468
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=20.71 E-value=3e+02 Score=26.52 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=40.3
Q ss_pred eEEeee-CCCCeEEEEeCCCCCc---ccccCcccCCEEEEeccccCcccccccchhhHHHHhhccCCceEEEEeec
Q 022783 97 LKFAKG-RDGGTYIDAIAPGGSA---DKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (292)
Q Consensus 97 l~~~~~-~~G~v~V~~v~~ggnA---~k~g~i~vGD~l~~~Sa~fg~e~w~a~~~g~~~~ai~~r~g~v~l~l~r~ 168 (292)
|.|..- .|| +.==.|.||+++ ...| ++.||+++++-. -.|=+...-.++|..++ ....+.|.++|.
T Consensus 196 i~lsPv~~~G-l~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING---~dL~D~~qa~~l~~~L~-~~tei~ltVeRd 265 (276)
T PRK09681 196 IQLTPVRKEG-IVGYAVKPGADRSLFDASG-FKEGDIAIALNQ---QDFTDPRAMIALMRQLP-SMDSIQLTVLRK 265 (276)
T ss_pred EEEEEEeeCC-ceEEEECCCCcHHHHHHcC-CCCCCEEEEeCC---eeCCCHHHHHHHHHHhc-cCCeEEEEEEEC
Confidence 344443 344 444567888775 4677 999999999874 22223333334444444 345688899984
No 469
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=20.42 E-value=3.9e+02 Score=24.85 Aligned_cols=57 Identities=19% Similarity=0.036 Sum_probs=38.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 022783 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK-LNQVKAGLSALEDALLA 281 (292)
Q Consensus 222 G~~L~k~gdYeeAIe~fekALeldP~~~d~a~a~YN~Accyak-Lgq~eeALe~LekAIel 281 (292)
.....+.+..++|-..|.+|+...+- ...+|..-|..-.. .++.+-|...++.+++.
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~---~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~ 65 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRC---TYHVYVAYALMEYYCNKDPKRARKIFERGLKK 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33444455589999999999965543 12346666666344 56666699999999886
No 470
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=20.28 E-value=3.6e+02 Score=26.06 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC--ccChhhh
Q 022783 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAG--YEDFKVI 289 (292)
Q Consensus 228 ~gdYeeAIe~fekALeldP~~~d~a~a~YN~AccyakLg---q~eeALe~LekAIelG--~~Df~~I 289 (292)
-++-++..+.+.++|.=+....-...+..|.|+++...| ++++|++-..++|+-| ++.|+++
T Consensus 261 ~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L~~~g~~~s~~e~~~~a~~~i~sG~a~~~l~~~ 327 (330)
T TIGR01245 261 GGSPEENAEILRDILRGKGSGAKRDIVALNAAAALYVAGRASDLKEGVELALEAIDSGAAAEKLEEL 327 (330)
T ss_pred CCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 467788889999999655321123357889999988877 5899999999999987 3444444
Done!