BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022784
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 137 ILTDYEK-LADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDC--YEKDL 193
IL Y K LA++ N + FV Q+G QNL+F N KG D YE +
Sbjct: 216 ILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFKGRQDAVIYEAHV 275
Query: 194 EIFPSGKKRDIEFKMIEGDFQLFEGK 219
F S + D + K G F F K
Sbjct: 276 RDFTSDQSLDGKLKNQLGTFAAFSEK 301
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 167 YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEGD--FQLFEGKWSIEQ 224
++IG ++ FG + N + Y++ E+ S +R K++EGD L +GK SI
Sbjct: 35 WRIGTEHEKFGFEVNTLRPMK-YDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISL 93
Query: 225 FNGGKFEDSESLLSQKFQT 243
GG+FE S + L QT
Sbjct: 94 EPGGQFELSGAPLETLHQT 112
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L NS+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCNSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1EJ6|A Chain A, Reovirus Core
pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1289
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 157 VEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLF 216
+EK NF+ +GQ FNA+ V +CY F + + F
Sbjct: 1028 MEKRGNFI----VGQNCSLVIPGFNAQDVFNCYFNSALAFSTEDVNAAMIPQVSAQFDAT 1083
Query: 217 EGKWSIE 223
+G+W+++
Sbjct: 1084 KGEWTLD 1090
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I + +S+ + K++ D LD + IL VPN
Sbjct: 270 DGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPN 315
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 142
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 101 SLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160
S H G+ +E K+G +++ S I A + ++ + +K+A FVPN +E+N
Sbjct: 43 SSHAKGIVLE--KIGIEAKQPNSAIRKCARV----QLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 161 DNFVRLYQIGQQNLAFG 177
D V + G++ A G
Sbjct: 97 DE-VLIAGFGRKGHAVG 112
>pdb|2NN5|A Chain A, Structure Of Conserved Protein Of Unknown Function Ef2215
From Enterococcus Faecalis
Length = 184
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 127 IDASLDTVWHILTDYEKLADFVPNLAVSQV 156
I AS T+W LT+ +KL + P L + ++
Sbjct: 44 ISASPQTIWRYLTETDKLKQWFPELEIGEL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,255,713
Number of Sequences: 62578
Number of extensions: 264384
Number of successful extensions: 554
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 18
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)