Query 022784
Match_columns 292
No_of_seqs 144 out of 772
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08866 SRPBCC_11 Ligand-bindi 99.9 2.3E-25 4.9E-30 184.1 20.0 144 121-283 1-144 (144)
2 PRK10724 hypothetical protein; 99.9 5.6E-25 1.2E-29 190.0 18.3 143 118-287 14-157 (158)
3 cd07813 COQ10p_like Coenzyme Q 99.9 3.2E-23 7E-28 171.2 16.7 135 122-283 2-137 (138)
4 COG2867 Oligoketide cyclase/li 99.9 7.4E-24 1.6E-28 179.8 12.6 143 119-287 2-145 (146)
5 PF03364 Polyketide_cyc: Polyk 99.9 1.7E-20 3.7E-25 152.7 16.0 126 127-278 1-130 (130)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.8 4.5E-19 9.8E-24 146.1 17.0 136 121-283 1-142 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.8 4.2E-18 9.2E-23 138.7 18.1 134 120-281 3-140 (140)
8 cd08860 TcmN_ARO-CYC_like N-te 99.8 6.9E-18 1.5E-22 143.6 17.6 138 120-284 2-145 (146)
9 cd08876 START_1 Uncharacterize 99.7 2.9E-16 6.4E-21 137.3 20.8 159 101-282 22-195 (195)
10 cd07817 SRPBCC_8 Ligand-bindin 99.7 2.5E-16 5.4E-21 128.3 15.4 133 121-282 2-138 (139)
11 cd05018 CoxG Carbon monoxide d 99.7 1.6E-14 3.4E-19 118.1 18.1 135 120-281 2-143 (144)
12 cd07821 PYR_PYL_RCAR_like Pyra 99.6 9.8E-15 2.1E-19 118.0 16.0 135 120-282 2-140 (140)
13 cd08865 SRPBCC_10 Ligand-bindi 99.6 9.8E-15 2.1E-19 117.8 15.6 135 121-283 1-140 (140)
14 cd07818 SRPBCC_1 Ligand-bindin 99.6 1.4E-14 3.1E-19 120.5 14.4 137 119-283 2-150 (150)
15 cd07824 SRPBCC_6 Ligand-bindin 99.6 4E-14 8.7E-19 118.6 16.1 132 120-280 2-145 (146)
16 PF10604 Polyketide_cyc2: Poly 99.6 5.2E-13 1.1E-17 108.0 20.7 135 119-282 2-139 (139)
17 cd08862 SRPBCC_Smu440-like Lig 99.5 4.7E-13 1E-17 108.8 17.3 135 120-283 2-138 (138)
18 cd08905 START_STARD1-like Chol 99.5 3.6E-12 7.8E-17 114.5 17.8 162 101-283 31-208 (209)
19 cd08906 START_STARD3-like Chol 99.5 7E-12 1.5E-16 112.9 19.7 159 103-283 33-208 (209)
20 cd07812 SRPBCC START/RHO_alpha 99.4 1.1E-11 2.5E-16 96.7 16.5 134 122-280 2-140 (141)
21 cd07823 SRPBCC_5 Ligand-bindin 99.4 6.7E-12 1.4E-16 105.1 16.1 136 121-282 1-145 (146)
22 cd08877 START_2 Uncharacterize 99.4 9E-12 2E-16 111.6 17.4 156 103-283 29-214 (215)
23 KOG3177 Oligoketide cyclase/li 99.4 1.4E-12 3E-17 116.7 11.8 145 118-287 67-214 (227)
24 cd08868 START_STARD1_3_like Ch 99.4 1.2E-11 2.7E-16 110.2 18.0 159 104-283 32-207 (208)
25 cd07820 SRPBCC_3 Ligand-bindin 99.4 5.5E-12 1.2E-16 104.5 14.6 116 122-264 2-122 (137)
26 cd07822 SRPBCC_4 Ligand-bindin 99.4 1.4E-11 3.1E-16 99.6 16.0 137 120-282 1-141 (141)
27 cd07814 SRPBCC_CalC_Aha1-like 99.4 1.5E-11 3.3E-16 99.8 15.6 135 121-283 2-139 (139)
28 cd08911 START_STARD7-like Lipi 99.3 3.2E-10 6.9E-15 101.7 20.5 162 100-283 25-206 (207)
29 cd08871 START_STARD10-like Lip 99.3 3.3E-10 7.1E-15 102.0 20.6 160 100-285 27-204 (222)
30 cd08874 START_STARD9-like C-te 99.3 2.6E-10 5.7E-15 102.7 18.2 155 100-271 26-194 (205)
31 cd08903 START_STARD5-like Lipi 99.2 7.9E-10 1.7E-14 99.3 18.8 161 103-283 29-207 (208)
32 cd08870 START_STARD2_7-like Li 99.2 2.5E-09 5.5E-14 95.7 21.3 160 100-283 26-208 (209)
33 cd08869 START_RhoGAP C-termina 99.2 5.6E-10 1.2E-14 99.3 16.8 154 102-279 25-192 (197)
34 cd08910 START_STARD2-like Lipi 99.2 2.5E-09 5.5E-14 96.0 18.9 157 100-283 29-206 (207)
35 cd08914 START_STARD15-like Lip 99.1 2.2E-09 4.8E-14 98.7 17.0 156 100-282 60-234 (236)
36 cd08872 START_STARD11-like Cer 99.1 4.1E-09 9E-14 96.7 18.7 171 100-286 30-229 (235)
37 cd00177 START Lipid-binding ST 99.1 1.9E-08 4.2E-13 85.9 19.3 158 102-279 21-190 (193)
38 cd07825 SRPBCC_7 Ligand-bindin 99.1 2.7E-09 5.9E-14 87.9 13.0 135 120-282 1-144 (144)
39 smart00234 START in StAR and p 99.1 1.5E-08 3.4E-13 89.0 17.8 162 104-284 28-203 (206)
40 cd08908 START_STARD12-like C-t 99.0 3.9E-08 8.4E-13 88.7 19.7 151 103-279 34-199 (204)
41 cd08867 START_STARD4_5_6-like 99.0 5.3E-08 1.1E-12 86.7 20.4 158 103-281 29-205 (206)
42 cd08913 START_STARD14-like Lip 99.0 1.1E-08 2.4E-13 94.4 16.2 144 101-271 64-226 (240)
43 cd08873 START_STARD14_15-like 98.9 1.1E-07 2.4E-12 87.5 18.7 135 100-255 59-206 (235)
44 COG5637 Predicted integral mem 98.9 4.4E-08 9.6E-13 86.5 12.5 139 117-283 68-210 (217)
45 PF01852 START: START domain; 98.8 2.7E-06 5.9E-11 74.5 22.8 158 104-283 27-202 (206)
46 cd07816 Bet_v1-like Ligand-bin 98.8 4.6E-07 1E-11 77.0 16.6 112 120-256 2-122 (148)
47 PF06240 COXG: Carbon monoxide 98.8 1.6E-06 3.4E-11 72.8 18.6 135 123-283 1-137 (140)
48 COG3427 Carbon monoxide dehydr 98.7 1.3E-06 2.9E-11 75.0 16.5 127 120-276 2-134 (146)
49 cd08909 START_STARD13-like C-t 98.7 1.8E-06 3.9E-11 78.1 17.9 154 103-279 34-200 (205)
50 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 3.7E-07 7.9E-12 77.8 12.1 134 115-286 7-140 (157)
51 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 7.6E-07 1.7E-11 72.1 13.2 129 121-283 2-136 (136)
52 cd08904 START_STARD6-like Lipi 98.6 4.1E-06 8.8E-11 75.6 19.0 158 103-280 29-202 (204)
53 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.7E-10 65.2 16.0 131 121-283 2-139 (139)
54 cd08902 START_STARD4-like Lipi 98.4 2E-05 4.3E-10 71.1 16.6 158 103-281 30-201 (202)
55 cd08898 SRPBCC_CalC_Aha1-like_ 98.4 1.5E-05 3.2E-10 65.4 14.5 132 120-282 2-144 (145)
56 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 3.8E-05 8.1E-10 63.3 14.6 126 121-282 2-132 (133)
57 cd08896 SRPBCC_CalC_Aha1-like_ 98.2 0.0002 4.2E-09 59.9 17.3 131 121-282 2-145 (146)
58 cd08895 SRPBCC_CalC_Aha1-like_ 98.1 0.00037 8E-09 58.3 17.4 134 121-282 2-145 (146)
59 PF08327 AHSA1: Activator of H 98.1 0.0003 6.4E-09 56.1 15.3 120 128-282 1-124 (124)
60 cd08901 SRPBCC_CalC_Aha1-like_ 98.0 0.00022 4.8E-09 59.1 12.9 130 121-283 2-132 (136)
61 cd08900 SRPBCC_CalC_Aha1-like_ 98.0 0.00089 1.9E-08 55.7 16.4 133 121-283 2-143 (143)
62 PF00407 Bet_v_1: Pathogenesis 97.9 0.0019 4E-08 55.6 17.9 113 119-256 4-125 (151)
63 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.00058 1.3E-08 57.3 14.0 132 121-283 2-149 (149)
64 cd07826 SRPBCC_CalC_Aha1-like_ 97.8 0.0027 5.9E-08 53.0 17.7 133 121-281 2-140 (142)
65 cd08907 START_STARD8-like C-te 97.7 0.0033 7.2E-08 57.0 16.0 155 103-279 34-200 (205)
66 COG3832 Uncharacterized conser 97.4 0.011 2.3E-07 50.4 15.2 138 116-282 5-148 (149)
67 cd08892 SRPBCC_Aha1 Putative h 97.2 0.023 5.1E-07 46.5 15.0 119 121-281 2-124 (126)
68 PLN00188 enhanced disease resi 97.1 0.019 4.2E-07 60.3 15.7 144 104-260 206-367 (719)
69 PF10698 DUF2505: Protein of u 96.8 0.051 1.1E-06 46.8 14.0 146 121-283 1-157 (159)
70 KOG2761 START domain-containin 96.6 0.43 9.3E-06 43.8 18.8 162 100-283 33-214 (219)
71 PTZ00220 Activator of HSP-90 A 96.5 0.049 1.1E-06 45.3 11.4 120 127-280 1-125 (132)
72 COG4276 Uncharacterized conser 94.8 1.7 3.7E-05 37.4 14.0 129 121-275 4-140 (153)
73 cd08864 SRPBCC_DUF3074 DUF3074 94.6 0.36 7.9E-06 43.7 10.2 53 214-278 148-203 (208)
74 PF08982 DUF1857: Domain of un 93.8 2.9 6.3E-05 36.1 13.8 120 130-283 19-147 (149)
75 cd08863 SRPBCC_DUF1857 DUF1857 92.2 6.9 0.00015 33.6 14.3 35 129-163 17-52 (141)
76 KOG1739 Serine/threonine prote 66.0 13 0.00028 38.3 5.7 44 241-284 560-603 (611)
77 cd08875 START_ArGLABRA2_like C 55.1 1.8E+02 0.0039 27.0 14.8 40 120-159 61-101 (229)
78 PF02713 DUF220: Domain of unk 41.9 16 0.00034 28.1 1.4 14 212-225 29-42 (74)
79 KOG2936 Uncharacterized conser 39.3 1.1E+02 0.0024 29.6 6.9 32 118-149 172-203 (301)
80 PF09366 DUF1997: Protein of u 36.1 2.7E+02 0.0059 23.7 12.5 42 241-282 97-145 (158)
81 COG4891 Uncharacterized conser 31.1 2.2E+02 0.0047 23.0 6.4 72 200-283 20-92 (93)
82 PF10741 T2SM_b: Type II secre 22.4 1.2E+02 0.0027 24.1 3.7 32 117-148 46-77 (110)
No 1
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.94 E-value=2.3e-25 Score=184.11 Aligned_cols=144 Identities=42% Similarity=0.740 Sum_probs=124.0
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
+++++.|+|||++||++|+||++||+|+|+|.+++++++.++..++++.+..++ +...|..++++++.+.+. .
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~------~ 73 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGI-LFFKFEARVVLELREREE------F 73 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEE-EeeeeeEEEEEEEEEecC------C
Confidence 468999999999999999999999999999999999998888777777766554 344566666666565321 2
Q ss_pred cceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREA 280 (292)
Q Consensus 201 ~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~r 280 (292)
++.|.|++++|+|+.++|.|+|++.+++ ++|+|+|.++++|++++|.++++..+++.+..+|++||++
T Consensus 74 ~~~i~~~~~~g~~~~~~g~w~~~~~~~~------------~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 74 PRELDFEMVEGDFKRFEGSWRLEPLADG------------GGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred CceEEEEEcCCchhceEEEEEEEECCCC------------CeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998641 4799999999999999999999999999999999999999
Q ss_pred HHH
Q 022784 281 AKK 283 (292)
Q Consensus 281 AE~ 283 (292)
||+
T Consensus 142 ae~ 144 (144)
T cd08866 142 AES 144 (144)
T ss_pred HhC
Confidence 984
No 2
>PRK10724 hypothetical protein; Provisional
Probab=99.93 E-value=5.6e-25 Score=190.05 Aligned_cols=143 Identities=13% Similarity=0.259 Sum_probs=127.6
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEE-EEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 118 SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 118 ~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~-qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
..+|+.++.|++|+++||++|+|+|+||+|+|+|++++|+++.++..++. ++|..++ ...|.++++++
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~--~~~f~srv~~~--------- 82 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI--SKTFTTRNQLT--------- 82 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc--cEEEEEEEEec---------
Confidence 45899999999999999999999999999999999999999988877664 6777764 57787776652
Q ss_pred CCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSC 276 (292)
Q Consensus 197 p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~a 276 (292)
++++|.|++++|+|+.|+|.|+|+|.++ ++|+|+|.++++++.+++..+++....+....|++|
T Consensus 83 ---~~~~I~~~~~~GpF~~l~g~W~f~p~~~-------------~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~A 146 (158)
T PRK10724 83 ---SNQSILMQLVDGPFKKLIGGWKFTPLSQ-------------EACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQA 146 (158)
T ss_pred ---CCCEEEEEecCCChhhccceEEEEECCC-------------CCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHH
Confidence 2468999999999999999999999864 469999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 022784 277 IREAAKKLINE 287 (292)
Q Consensus 277 lr~rAE~~~~~ 287 (292)
|++||+++|+-
T Consensus 147 F~~Ra~~~yg~ 157 (158)
T PRK10724 147 FTVRAKEVYSA 157 (158)
T ss_pred HHHHHHHHhCC
Confidence 99999999863
No 3
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.91 E-value=3.2e-23 Score=171.23 Aligned_cols=135 Identities=18% Similarity=0.326 Sum_probs=112.8
Q ss_pred EEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEE-EeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQ-IGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 122 ~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~q-vg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
+.++.|+||+++||++++|+++||+|+|+|.+++++++.++...+++ ++..+ +...+.+++.++ +
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------------~ 67 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG--IRESFTSRVTLV------------P 67 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc--ccEEEEEEEEec------------C
Confidence 57899999999999999999999999999999999998887655543 22221 122333332221 2
Q ss_pred cceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREA 280 (292)
Q Consensus 201 ~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~r 280 (292)
++.|.|++++|+|+.++|.|+|+|.++ ++|+|+|+++++|++++|.+|++..+.+.++.+|.+|++|
T Consensus 68 ~~~i~~~~~~g~~~~~~g~w~~~p~~~-------------~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 68 PESIEAELVDGPFKHLEGEWRFKPLGE-------------NACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred CCEEEEEecCCChhhceeEEEEEECCC-------------CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999874 4799999999999999999999999999999999999999
Q ss_pred HHH
Q 022784 281 AKK 283 (292)
Q Consensus 281 AE~ 283 (292)
|++
T Consensus 135 ~~~ 137 (138)
T cd07813 135 AKQ 137 (138)
T ss_pred Hhh
Confidence 986
No 4
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.91 E-value=7.4e-24 Score=179.77 Aligned_cols=143 Identities=19% Similarity=0.331 Sum_probs=129.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecceeeeEEEeeeeEEEeeeecccccC
Q 022784 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (292)
Q Consensus 119 r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p 197 (292)
.+++.+..|+++|+++|++++|+++||+|+|||..++|+++.+..+.. ..+|.+++ ...|+++++++..
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i--~e~F~Trv~~~~~-------- 71 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGI--RETFTTRVTLKPT-------- 71 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhe--eeeeeeeeeecCc--------
Confidence 368899999999999999999999999999999999999998888766 47888875 7889999887522
Q ss_pred CCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHH
Q 022784 198 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCI 277 (292)
Q Consensus 198 ~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~al 277 (292)
.+.|..++++|||+.+.|.|+|+|+++ ++|+|++.++++++..+...++..........|++||
T Consensus 72 ---~~~I~~~l~~GPFk~L~~~W~F~pl~~-------------~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF 135 (146)
T COG2867 72 ---ARSIDMKLIDGPFKYLKGGWQFTPLSE-------------DACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAF 135 (146)
T ss_pred ---hhhhhhhhhcCChhhhcCceEEEECCC-------------CceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 248999999999999999999999854 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 022784 278 REAAKKLINE 287 (292)
Q Consensus 278 r~rAE~~~~~ 287 (292)
.+||+.+|+.
T Consensus 136 ~kRA~~~y~~ 145 (146)
T COG2867 136 EKRAKEVYGL 145 (146)
T ss_pred HHHHHHhhcC
Confidence 9999999875
No 5
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.86 E-value=1.7e-20 Score=152.69 Aligned_cols=126 Identities=27% Similarity=0.532 Sum_probs=104.4
Q ss_pred EcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEE-EEeecceeeeEEEeeeeEEEeeeecccccCCCCcceEE
Q 022784 127 IDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIE 205 (292)
Q Consensus 127 I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~-qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~~r~I~ 205 (292)
|+||+++||++++||++||+|+|.|.+++++++.++++++. .+...++ ...+.+++..+ + ...|.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~--------~~~~~ 66 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGI--KRSWTSRVTED----P--------PERIR 66 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTT--CEEEEEEEEEE----C--------TTTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCE--EEEEEEEEEEE----E--------eeeee
Confidence 78999999999999999999999999999999999876663 3444333 34454443322 1 23499
Q ss_pred EEEEeCCcceeEEEEEEEEccC---CccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHH
Q 022784 206 FKMIEGDFQLFEGKWSIEQFNG---GKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIR 278 (292)
Q Consensus 206 f~~veGdFk~feG~Wslep~~~---g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr 278 (292)
++++.|+|+.++|.|+|++.++ | .+|+++|.++++|++++|..+++.++++.++.+|++||
T Consensus 67 ~~~~~g~~~~~~g~W~~~~~~~~~~g------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 67 FEQISGPFKSFEGSWRFEPLGGNEGG------------TRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EESSETTEEEEEEEEEEEEETTECCE------------EEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCchhcEEEEEEEECCCCcCC------------CEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999874 3 47899999999999999999999999999999999986
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.83 E-value=4.5e-19 Score=146.09 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=105.3
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE--EEEeecceeeeEEEeeeeEEEeeeecccccCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL--YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv--~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~ 198 (292)
++.++.|+||+++||++|+|+++||+|+|+ ..++++...++..++ ..++..++ ...+.... +.. +
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-----~~~----~- 67 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTSRR-----VLD----P- 67 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEEEE-----EEc----C-
Confidence 357899999999999999999999999999 888888765554333 23433332 22232211 111 1
Q ss_pred CCcceEEEEEEe--CCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCC--chHHHHHHHHHHHHHHHH
Q 022784 199 GKKRDIEFKMIE--GDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLW--LPVRLVEGRLCNEIKTNL 274 (292)
Q Consensus 199 g~~r~I~f~~ve--GdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~--lP~~Lv~~~l~~~i~~~L 274 (292)
.+++|.|.+++ |+|+.++|.|.|++.++ ++|+|+|.++++++.+ ++..++.+++++.+..+|
T Consensus 68 -~~~~i~~~~~~~~~~~~~~~g~w~~~~~~~-------------~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (142)
T cd08861 68 -EGRRIVFRQEEPPPPVASMSGEWRFEPLGG-------------GGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAEL 133 (142)
T ss_pred -CCCEEEEEEeeCCCChhhheeEEEEEECCC-------------CcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHH
Confidence 24689999987 78999999999999864 4799999999999975 456889999999999999
Q ss_pred HHHHHHHHH
Q 022784 275 SCIREAAKK 283 (292)
Q Consensus 275 ~alr~rAE~ 283 (292)
.+||++||+
T Consensus 134 ~~lk~~~E~ 142 (142)
T cd08861 134 AALRAAAER 142 (142)
T ss_pred HHHHHHhhC
Confidence 999999984
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.80 E-value=4.2e-18 Score=138.67 Aligned_cols=134 Identities=17% Similarity=0.287 Sum_probs=104.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeE--EEE-EEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV--RLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~--rv~-qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
.++.++.|+||+++||++|+|+++||+|+|+|.++++++..++.. ..+ ..+..+ .. ...+.++...
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~----- 71 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG----IK--DTYALEYTWD----- 71 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee----EE--EEEEEEEEEc-----
Confidence 588999999999999999999999999999999999987544322 111 122111 11 1111222211
Q ss_pred CCCCcceEEEEEEeCC-cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFKMIEGD-FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 197 p~g~~r~I~f~~veGd-Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~ 275 (292)
+.++|.|+.++|. +..+.|.|.|++.++ +|+|+|.++++|++++|.++++.+.+.....+++
T Consensus 72 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (140)
T cd07819 72 ---GAGSVSWTLVEGEGNRSQEGSYTLTPKGD--------------GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALK 134 (140)
T ss_pred ---CCCcEEEEEecccceeEEEEEEEEEECCC--------------CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHH
Confidence 1357999999886 888999999999753 6999999999999999999999999999999999
Q ss_pred HHHHHH
Q 022784 276 CIREAA 281 (292)
Q Consensus 276 alr~rA 281 (292)
+|++.|
T Consensus 135 ~l~~~~ 140 (140)
T cd07819 135 GLKKRV 140 (140)
T ss_pred hHhhhC
Confidence 999875
No 8
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.79 E-value=6.9e-18 Score=143.58 Aligned_cols=138 Identities=20% Similarity=0.345 Sum_probs=107.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEE-EEee--cceeeeEEEeeeeEEEeeeeccccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY-QIGQ--QNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~-qvg~--~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+.+.+|.|+|||++||++|+|+++||+|+|+|+.++++++.+....+. .+.. .++ ...+.++.+++
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~--~~~w~s~~~~~--------- 70 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT--VWSWVSERTLD--------- 70 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE--EEEEEEEEEec---------
Confidence 357899999999999999999999999999999999999877654432 1111 221 23333332221
Q ss_pred CCCCcceEEEE-EEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCC--CchHHHHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFK-MIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKL--WLPVRLVEGRLCNEIKTN 273 (292)
Q Consensus 197 p~g~~r~I~f~-~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~--~lP~~Lv~~~l~~~i~~~ 273 (292)
...++|.|+ ...|+|+.+.|.|+|++.++ +|+|+|.++++.+. +++..++.+.+++..+..
T Consensus 71 --~~~~~i~~~~~~~~p~~~m~~~W~f~~~~~--------------gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (146)
T cd08860 71 --PVNRTVRARRVETGPFAYMNIRWEYTEVPE--------------GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQ 134 (146)
T ss_pred --CCCcEEEEEEecCCCcceeeeeEEEEECCC--------------CEEEEEEEEEEECCCCccchHHHHHHHhcccHHH
Confidence 124568884 44688999999999999853 59999999999875 777888999999999999
Q ss_pred HHHHHHHHHHH
Q 022784 274 LSCIREAAKKL 284 (292)
Q Consensus 274 L~alr~rAE~~ 284 (292)
|.+||++||+.
T Consensus 135 l~~Lk~~aE~~ 145 (146)
T cd08860 135 MARIKKKIEAA 145 (146)
T ss_pred HHHHHHHhhhc
Confidence 99999999973
No 9
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.74 E-value=2.9e-16 Score=137.31 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=117.6
Q ss_pred cccCCCeEEEEEEeCCCc-eEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCC-eEEEEEEeecceeeeE
Q 022784 101 SLHGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQIGQQNLAFGI 178 (292)
Q Consensus 101 ~~~~~~v~V~v~~~~~~~-r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~-~~rv~qvg~~~l~~g~ 178 (292)
..+++|+.|+.+..+++. ..+++++.|++++++||+++.|+++||+|.|+|.+++++++.++ ....++..... +
T Consensus 22 ~~~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p----~ 97 (195)
T cd08876 22 VKDKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLP----W 97 (195)
T ss_pred EecCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecc----c
Confidence 336789999999987764 79999999999999999999999999999999999999998766 33334322111 1
Q ss_pred EEeee-eEEEe-eeecccccCCCCcceEEEEEEeC----C-------cceeEEEEEEEEccCCccccccccccCCCceEE
Q 022784 179 KFNAK-GVLDC-YEKDLEIFPSGKKRDIEFKMIEG----D-------FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTL 245 (292)
Q Consensus 179 ~f~ar-~vld~-~E~~~~~~p~g~~r~I~f~~veG----d-------Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrV 245 (292)
.+..+ .+... .... . .+..+.+.+.++ | ++.+.|.|.|++.++ ++|+|
T Consensus 98 pvs~Rdfv~~~~~~~~----~--~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~-------------~~t~v 158 (195)
T cd08876 98 PVKDRDMVLRSTTEQD----A--DDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN-------------GKTRV 158 (195)
T ss_pred ccCCceEEEEEEEEEc----C--CCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC-------------CeEEE
Confidence 11111 11110 0000 0 012333333322 2 567789999999864 47999
Q ss_pred EEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 246 SYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAK 282 (292)
Q Consensus 246 ty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE 282 (292)
+|.++++|++++|.++++..+++.+..+|.+|+++|+
T Consensus 159 t~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 159 TYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999983
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.72 E-value=2.5e-16 Score=128.30 Aligned_cols=133 Identities=14% Similarity=0.292 Sum_probs=100.8
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
|+.++.|+||+++||++++|+++||+|+|++.+++++...+....+... .+. ...+..+ +.+.. +
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~g~--~~~~~~~----v~~~~-------~ 66 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAKGP--AGL--SVEWDAE----ITEQV-------P 66 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEecC--CCC--cEEEEEE----EeccC-------C
Confidence 6889999999999999999999999999999999987642222222111 011 1223222 22211 2
Q ss_pred cceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchH----HHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPV----RLVEGRLCNEIKTNLSC 276 (292)
Q Consensus 201 ~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~----~Lv~~~l~~~i~~~L~a 276 (292)
++.|.|.+..|.| .+.|.|+|++.++ ++|+|+|+++++|+.+++. .+++..+++.++..|+.
T Consensus 67 ~~~i~~~~~~~~~-~~~~~~~f~~~~~-------------~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (139)
T cd07817 67 NERIAWRSVEGAD-PNAGSVRFRPAPG-------------RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRR 132 (139)
T ss_pred CCEEEEEECCCCC-CcceEEEEEECCC-------------CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHH
Confidence 5679999998888 8899999998753 4799999999999988776 55778888888888999
Q ss_pred HHHHHH
Q 022784 277 IREAAK 282 (292)
Q Consensus 277 lr~rAE 282 (292)
||+.||
T Consensus 133 lk~~aE 138 (139)
T cd07817 133 FKQLVE 138 (139)
T ss_pred HHHHhh
Confidence 999887
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.65 E-value=1.6e-14 Score=118.12 Aligned_cols=135 Identities=20% Similarity=0.224 Sum_probs=99.1
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEE-EEeecceeeeEEEeeeeEEEeeeecccccCC
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~-qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~ 198 (292)
+++.++.|+||+++||++|+|+++|++|+|++..+++++ ++...+. +++... ++..+... ..+.+.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~------ 69 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIG--PNEYEATVKLKVGP--VKGTFKGK--VELSDLD------ 69 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccC--CCeEEEEEEEEEcc--EEEEEEEE--EEEEecC------
Confidence 588999999999999999999999999999999988775 3333332 222211 12233322 2223321
Q ss_pred CCcceEEEEEEe-C--CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCc---hHHHHHHHHHHHHHH
Q 022784 199 GKKRDIEFKMIE-G--DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL---PVRLVEGRLCNEIKT 272 (292)
Q Consensus 199 g~~r~I~f~~ve-G--dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~l---P~~Lv~~~l~~~i~~ 272 (292)
+++++.+.... | .+..+.+.|.|++.+ ++|+|+|.+++++++++ +..+++..+++.+..
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~ 134 (144)
T cd05018 70 -PPESYTITGEGKGGAGFVKGTARVTLEPDG--------------GGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQ 134 (144)
T ss_pred -CCcEEEEEEEEcCCCceEEEEEEEEEEecC--------------CcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHH
Confidence 24677787653 3 378899999999973 37999999999999876 777888888888888
Q ss_pred HHHHHHHHH
Q 022784 273 NLSCIREAA 281 (292)
Q Consensus 273 ~L~alr~rA 281 (292)
.+++||+++
T Consensus 135 ~~~~l~~~~ 143 (144)
T cd05018 135 FFENLASKI 143 (144)
T ss_pred HHHHHHHhh
Confidence 888888876
No 12
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.64 E-value=9.8e-15 Score=118.04 Aligned_cols=135 Identities=19% Similarity=0.327 Sum_probs=103.7
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecC--CeEEEEEEeecceeeeEEEeeeeEEEeeeecccccC
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND--NFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g--~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p 197 (292)
+|+.++.|+||+++||++|+|+++|++|+|++.+++++...+ +..+..... .+..+.. .+.+.+ |
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g~~~~~----~i~~~~----~ 68 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DGGTVRE----RLLALD----D 68 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC-----CCCEEEE----EehhcC----c
Confidence 588999999999999999999999999999999999887542 222111111 0111111 112211 1
Q ss_pred CCCcceEEEEEEeC--CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHH
Q 022784 198 SGKKRDIEFKMIEG--DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 198 ~g~~r~I~f~~veG--dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~ 275 (292)
+.++|.|+++.| ++..+.|.|+|++.++ ++|+|+|++++++++++|..+++..+++.+...|+
T Consensus 69 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (140)
T cd07821 69 --AERRYSYRIVEGPLPVKNYVATIRVTPEGD-------------GGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLA 133 (140)
T ss_pred --cCCEEEEEecCCCCCcccceEEEEEEECCC-------------CccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHH
Confidence 127899999976 4678899999999764 37999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022784 276 CIREAAK 282 (292)
Q Consensus 276 alr~rAE 282 (292)
+|+++++
T Consensus 134 ~L~~~~~ 140 (140)
T cd07821 134 ALKAALE 140 (140)
T ss_pred HHHHhhC
Confidence 9999874
No 13
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=9.8e-15 Score=117.80 Aligned_cols=135 Identities=16% Similarity=0.286 Sum_probs=97.8
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCC--eEEE-EEEeecceeeeEEEeeeeEEEeeeecccccC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN--FVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~--~~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p 197 (292)
|+.++.|+||+++||++|+|+++|++|+|++..++++...+. +.+. .+.... +..+... ..+.+.+
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~----g~~~~~~--~~v~~~~----- 69 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFL----GRRIELT--YEITEYE----- 69 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEec----CceEEEE--EEEEEec-----
Confidence 467899999999999999999999999999999988754321 1121 122211 1222222 1223321
Q ss_pred CCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCc--hHHHHHHHHHHHHHHHHH
Q 022784 198 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL--PVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 198 ~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~l--P~~Lv~~~l~~~i~~~L~ 275 (292)
+++.+.|....|++. +.+.|+|++.+ ++|+|+|+++++++++. ...++...+++.+..+|+
T Consensus 70 --p~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (140)
T cd08865 70 --PGRRVVFRGSSGPFP-YEDTYTFEPVG--------------GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALE 132 (140)
T ss_pred --CCcEEEEEecCCCcc-eEEEEEEEEcC--------------CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 257899998888775 69999999864 36999999999986543 346788889999999999
Q ss_pred HHHHHHHH
Q 022784 276 CIREAAKK 283 (292)
Q Consensus 276 alr~rAE~ 283 (292)
+|+++||+
T Consensus 133 ~lk~~~e~ 140 (140)
T cd08865 133 NLKALLEA 140 (140)
T ss_pred HHHHHhhC
Confidence 99999874
No 14
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=1.4e-14 Score=120.53 Aligned_cols=137 Identities=13% Similarity=0.220 Sum_probs=99.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEec------CCeEEEEEEeecceeeeEEEeeeeEEEeeeec
Q 022784 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN------DNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKD 192 (292)
Q Consensus 119 r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~------g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~ 192 (292)
++++.++.|+||+++||++++|+++||+|+|++..+..+... +.+.+....+.... ......+.+.+
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-------~~~~~~v~~~~ 74 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV-------GEGEMEITESV 74 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc-------cceEEEEEecC
Confidence 578999999999999999999999999999999876555431 11111111111000 01112223322
Q ss_pred ccccCCCCcceEEEEEEe-CCcc-eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCch----HHHHHHHH
Q 022784 193 LEIFPSGKKRDIEFKMIE-GDFQ-LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLP----VRLVEGRL 266 (292)
Q Consensus 193 ~~~~p~g~~r~I~f~~ve-GdFk-~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP----~~Lv~~~l 266 (292)
++++|.|++.. |+++ ...+.|.|++.+ ++|+|+|.++++++++.+ ..++...+
T Consensus 75 -------p~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (150)
T cd07818 75 -------PNERIEYELRFIKPFEATNDVEFTLEPVG--------------GGTKVTWGMSGELPFPLKLMYLFLDMDKMI 133 (150)
T ss_pred -------CCcEEEEEEEecCCccccceEEEEEEEcC--------------CceEEEEEEEecCCchHHHHHHHhhHHHHH
Confidence 35789999985 6785 889999999984 379999999999886544 46678889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022784 267 CNEIKTNLSCIREAAKK 283 (292)
Q Consensus 267 ~~~i~~~L~alr~rAE~ 283 (292)
++.+...|.+||+++|+
T Consensus 134 ~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 134 GKDFEKGLANLKAVLEK 150 (150)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999885
No 15
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=4e-14 Score=118.60 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=89.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecC-Ce--EEE--EEEeecceeeeEEEeeeeEEEeeeeccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NF--VRL--YQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g-~~--~rv--~qvg~~~l~~g~~f~ar~vld~~E~~~~ 194 (292)
++..+..|+||+++||++++|+++||+|+|+|.++++++..+ .. .+. ...+.. ++.+... ..+.+.+
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~--~~v~~~~-- 73 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLL----PYRLRFE--LRVTRIE-- 73 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecC----CcEEEEE--EEEEeec--
Confidence 567788999999999999999999999999999999987422 11 221 111211 2222212 2223322
Q ss_pred ccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCC-------chHHHHHHHHH
Q 022784 195 IFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLW-------LPVRLVEGRLC 267 (292)
Q Consensus 195 ~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~-------lP~~Lv~~~l~ 267 (292)
+++.+.|. ..|+|+. +++|+|++.+ ++|+|+|+.+++++++ ++..++...++
T Consensus 74 -----p~~~~~~~-~~g~~~~-~~~~~~~~~~--------------~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 132 (146)
T cd07824 74 -----PLSLLEVR-ASGDLEG-VGRWTLAPDG--------------SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHR 132 (146)
T ss_pred -----CCcEEEEE-EEEeeeE-EEEEEEEEcC--------------CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHH
Confidence 35789997 4788875 7999998854 3699999999999874 33445555555
Q ss_pred HHHHHHHHHHHHH
Q 022784 268 NEIKTNLSCIREA 280 (292)
Q Consensus 268 ~~i~~~L~alr~r 280 (292)
+.++.++++||++
T Consensus 133 ~~~~~~~~~L~~~ 145 (146)
T cd07824 133 RVMRAGEKGLARR 145 (146)
T ss_pred HHHHhHHHHHHhh
Confidence 5566666666654
No 16
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.59 E-value=5.2e-13 Score=108.03 Aligned_cols=135 Identities=21% Similarity=0.428 Sum_probs=101.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeE-EEEEEeecceeeeEEEeeeeEEEeeeecccccC
Q 022784 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV-RLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (292)
Q Consensus 119 r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~-rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p 197 (292)
.+++.++.|+||+++||++|+|++++++|.|.+..++++...+... +....... ..+.. .+.+.+ |
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~----~i~~~~----~ 68 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGR-----GTVRE----EITEYD----P 68 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSC-----SEEEE----EEEEEE----T
T ss_pred EEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEeccc-----cceeE----EEEEec----C
Confidence 4689999999999999999999999999999999999887444432 11111110 11222 222221 2
Q ss_pred CCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEec--CCCchHHHHHHHHHHHHHHHHH
Q 022784 198 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRP--KLWLPVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 198 ~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~veP--k~~lP~~Lv~~~l~~~i~~~L~ 275 (292)
.++.+.|+++.+++..+.+.|+|++.++ +|+|++++++++ ..++...++...+...+...|+
T Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (139)
T PF10604_consen 69 --EPRRITWRFVPSGFTNGTGRWRFEPVGD--------------GTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALE 132 (139)
T ss_dssp --TTTEEEEEEESSSSCEEEEEEEEEEETT--------------TEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEEEecceeEEEEEEEEEEcCC--------------CEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHH
Confidence 1578999997556778899999999863 599999999997 3456667888999999999999
Q ss_pred HHHHHHH
Q 022784 276 CIREAAK 282 (292)
Q Consensus 276 alr~rAE 282 (292)
+|++.||
T Consensus 133 ~l~~~~E 139 (139)
T PF10604_consen 133 NLKRAAE 139 (139)
T ss_dssp HHHHHHH
T ss_pred HHhcccC
Confidence 9999987
No 17
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.55 E-value=4.7e-13 Score=108.82 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=95.6
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEec-CCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCC
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-DNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~-g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~ 198 (292)
+++.++.|+||+++||++++|+++|++|+|.+..++++... +.+.+....+.. +..+. ..+.+..
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~----~~~~~----~~i~~~~------ 67 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPG----LVRST----FTVTELR------ 67 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCC----CCceE----EEEEEec------
Confidence 57899999999999999999999999999999999988754 222222111110 11122 1223322
Q ss_pred CCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCC-CchHHHHHHHHHHHHHHHHHHH
Q 022784 199 GKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKL-WLPVRLVEGRLCNEIKTNLSCI 277 (292)
Q Consensus 199 g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~-~lP~~Lv~~~l~~~i~~~L~al 277 (292)
+++++.|+... ++....+.|+|++.++ ++|+|+|+.++.... ++...++...+++.++.+|++|
T Consensus 68 -p~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 132 (138)
T cd08862 68 -PGHSFTWTGPA-PGISAVHRHEFEAKPD-------------GGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGL 132 (138)
T ss_pred -CCCEEEEEecC-CCEEEEEEEEEEEcCC-------------CcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 25689998654 3445578999998753 479999888776432 2345788899999999999999
Q ss_pred HHHHHH
Q 022784 278 REAAKK 283 (292)
Q Consensus 278 r~rAE~ 283 (292)
|+.+|.
T Consensus 133 k~~~E~ 138 (138)
T cd08862 133 KAAAEQ 138 (138)
T ss_pred HHHhcC
Confidence 999873
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.47 E-value=3.6e-12 Score=114.50 Aligned_cols=162 Identities=15% Similarity=0.277 Sum_probs=115.1
Q ss_pred cccCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHH-HHHHChhhhhccccCCceEEEEEecCC-eEEEEEEeecceeeeE
Q 022784 101 SLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQIGQQNLAFGI 178 (292)
Q Consensus 101 ~~~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw-~vLTDyE~yPeFiP~v~~srVler~g~-~~rv~qvg~~~l~~g~ 178 (292)
+.+++|+.|+.+..++....++++..|++|+++|+ .++.|++.+++|++.|.+++++++-+. ...++++.... + ++
T Consensus 31 ~~~~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~-p-~~ 108 (209)
T cd08905 31 IVAENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAET-A-GN 108 (209)
T ss_pred EecCCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccC-C-CC
Confidence 34578999999998875588999999999999999 888899999999999999999988554 33334431110 0 00
Q ss_pred EEeeee--------------EEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceE
Q 022784 179 KFNAKG--------------VLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTT 244 (292)
Q Consensus 179 ~f~ar~--------------vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~Tr 244 (292)
.+..|- ++-......+..|. .+..|+.+.. .|.|.|+|.+++ ++.|+
T Consensus 109 ~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~-~~~~VR~~~~-------~~~w~l~p~~~~-----------~~~t~ 169 (209)
T cd08905 109 VVGPRDFVSVRCAKRRGSTCVLAGMATHFGLMPE-QKGFIRAENG-------PTCIVLRPLAGD-----------PSKTK 169 (209)
T ss_pred ccCccceEEEEEEEEcCCcEEEEEEeecCCCCCC-CCCeEEEEee-------ccEEEEEECCCC-----------CCceE
Confidence 011110 00000011111221 1234555443 678999998641 25799
Q ss_pred EEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 245 LSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 245 Vty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
|+|.+.++|+++||.+|++..+.+.....|.+||+.++.
T Consensus 170 v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 170 LTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998863
No 19
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.47 E-value=7e-12 Score=112.85 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=111.8
Q ss_pred cCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHH-HHHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecceeeeEEE
Q 022784 103 HGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGIKF 180 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw-~vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~g~~f 180 (292)
+++|+.|+.+..+++...++++..|++|++++| ++|.|.+.+++|.+++.+++++++-+.... +|++..-. .++.+
T Consensus 33 ~~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~--~~~pv 110 (209)
T cd08906 33 NDNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGA--AGGVV 110 (209)
T ss_pred cCCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEcccc--ccCCC
Confidence 358999999998876688999999999999998 699999999999999999999998554333 34332110 00011
Q ss_pred eee--eEEEeee------------ecccccCCCCcceEEEEEEeCCcceeEEEEEEEE-ccCCccccccccccCCCceEE
Q 022784 181 NAK--GVLDCYE------------KDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQ-FNGGKFEDSESLLSQKFQTTL 245 (292)
Q Consensus 181 ~ar--~vld~~E------------~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep-~~~g~~~~~~~~~~~~~~TrV 245 (292)
..| +++.... ...+..|. .+..|+.+. ...|.|.+.+ .+. +.|++
T Consensus 111 ~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~P~-~~~~VR~~~------~~~G~~i~~~~~~~-------------~~t~v 170 (209)
T cd08906 111 SPRDFVNVRRIERRRDRYVSAGISTTHSHKPP-LSKYVRGEN------GPGGFVVLKSASNP-------------SVCTF 170 (209)
T ss_pred CCCceEEEEEEEecCCcEEEEEEEEecCCCCC-CCCeEEEee------eccEEEEEECCCCC-------------CceEE
Confidence 111 0000000 00111221 123344432 3468888876 332 57999
Q ss_pred EEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 246 SYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 246 ty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
+|.+.++|+++||.++++..+.+.+...|.+||++++.
T Consensus 171 t~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 171 IWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999874
No 20
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.1e-11 Score=96.71 Aligned_cols=134 Identities=25% Similarity=0.376 Sum_probs=92.3
Q ss_pred EEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEE-eecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQI-GQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 122 ~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qv-g~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
+.++.|+||+++||++|+|+++|++|+|.+..++++...+........ .... +..+... ..+.+.. +
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~v~~~~-------~ 69 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKG---GRRLTLT--SEVTEVD-------P 69 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecC---Cccccce--EEEEEec-------C
Confidence 568899999999999999999999999999999988753332211110 0000 0011111 1222211 1
Q ss_pred cceEEEEEEeCCcc-eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCc---hHHHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGDFQ-LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL---PVRLVEGRLCNEIKTNLSC 276 (292)
Q Consensus 201 ~r~I~f~~veGdFk-~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~l---P~~Lv~~~l~~~i~~~L~a 276 (292)
+..+.|....+++. .+.+.|.+++.++ ++|+|++.++++++.++ +..++++.+++.+...+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T cd07812 70 PRPGRFRVTGGGGGVDGTGEWRLEPEGD-------------GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRA 136 (141)
T ss_pred CCceEEEEecCCCCcceeEEEEEEECCC-------------CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHH
Confidence 35788988877754 7899999999753 37999999999999886 4566677777777777766
Q ss_pred HHHH
Q 022784 277 IREA 280 (292)
Q Consensus 277 lr~r 280 (292)
++++
T Consensus 137 ~~~~ 140 (141)
T cd07812 137 LKAR 140 (141)
T ss_pred HHhh
Confidence 6553
No 21
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=6.7e-12 Score=105.13 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=92.4
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecceeeeEEEeeeeEEEeeeecccccCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSG 199 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g 199 (292)
|+.++.|+|||++||++|+|+++|+.|+|++...+++. ++.... ..++...+ ...+..+ +.+.+.. +
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~--~~~~~~~--~~~~~~~----~-- 68 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPI--SASFKGT--ARLLEDD----E-- 68 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccE--EEEEEEE--EEEEecc----C--
Confidence 46789999999999999999999999999999887653 333322 13332222 2233333 3333321 0
Q ss_pred CcceEEEEEEe--CC---cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHH---HHHHHHHHHHH
Q 022784 200 KKRDIEFKMIE--GD---FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVR---LVEGRLCNEIK 271 (292)
Q Consensus 200 ~~r~I~f~~ve--Gd---Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~---Lv~~~l~~~i~ 271 (292)
+++.+.+.... +. .-.....|++++.+ ++|+|+|.+++++.++++.. ++++..++.+.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~--------------~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~ 134 (146)
T cd07823 69 AARRAVLEATGKDARGQGTAEATVTLRLSPAG--------------GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLA 134 (146)
T ss_pred CCcEEEEEEEEecCCCcceEEEEEEEEEEecC--------------CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHH
Confidence 24677776543 11 11356689998832 47999999999999998764 47777777777
Q ss_pred HHHHHHHHHHH
Q 022784 272 TNLSCIREAAK 282 (292)
Q Consensus 272 ~~L~alr~rAE 282 (292)
..+++|++++|
T Consensus 135 ~~~~~l~~~~e 145 (146)
T cd07823 135 QFAANLEARLA 145 (146)
T ss_pred HHHHHHHHHhc
Confidence 88888888876
No 22
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.43 E-value=9e-12 Score=111.65 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=114.8
Q ss_pred cCCCeEEEEEEeCCC-ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecceeeeEEE
Q 022784 103 HGDGVCIEIKKLGRN-SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGIKF 180 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~-~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~g~~f 180 (292)
+.+|+.|+.+..+++ ...++++..|++|++.+.++|.|.+.|++|+|.|.++++++..+..-. +++.-. +.|.+
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~----~PwPv 104 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVD----LPWPL 104 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEe----CceEe
Confidence 578999999999887 678999999999999999999999999999999999999987554322 232211 12223
Q ss_pred eeeeE-EEeeeec-c-----------------cc-------cCCCCc-ceEEEEEEeCCcceeEEEEEEEEccCCccccc
Q 022784 181 NAKGV-LDCYEKD-L-----------------EI-------FPSGKK-RDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDS 233 (292)
Q Consensus 181 ~ar~v-ld~~E~~-~-----------------~~-------~p~g~~-r~I~f~~veGdFk~feG~Wslep~~~g~~~~~ 233 (292)
..|-. +...... . +. +|.. + +.++. ..+.|.|.|+|.++
T Consensus 105 ~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~-~~~~vR~-------~~~~~~~~i~p~~~------ 170 (215)
T cd08877 105 SNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPST-SAKGVRR-------IIKYYGFVITPISP------ 170 (215)
T ss_pred cceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCC-CCCceEE-------EEecceEEEEEcCC------
Confidence 33211 1100000 0 00 1110 1 22332 34578999999875
Q ss_pred cccccCCCceEEEEEEEEecCCC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 234 ESLLSQKFQTTLSYSVDVRPKLW-LPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 234 ~~~~~~~~~TrVty~v~vePk~~-lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
+.|.++|.+.++|++. +|.++++...++.+..++.+|++.|++
T Consensus 171 -------~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 171 -------TKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred -------CCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998 999999999999999999999999976
No 23
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=99.43 E-value=1.4e-12 Score=116.72 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=118.0
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEec-CCeEEE-EEEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 118 SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-DNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 118 ~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~-g~~~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
.+..+....|.+++++||+++.|++.|.+|+|||+++.|.++. ++...+ ..+|+..+ -..|...++.+
T Consensus 67 ~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l--~E~y~S~Vt~~-------- 136 (227)
T KOG3177|consen 67 EKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPL--DERYTSNVTCV-------- 136 (227)
T ss_pred HHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCccc--chhheeeeEEe--------
Confidence 3456677789999999999999999999999999999999987 444444 46787764 45677776654
Q ss_pred cCCCCcceEEEEEEeCC-cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHH
Q 022784 196 FPSGKKRDIEFKMIEGD-FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNL 274 (292)
Q Consensus 196 ~p~g~~r~I~f~~veGd-Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L 274 (292)
++.-+.-...+|- |..+...|+|.|..+ -++.|.|.|.++++++..+-..+..-..+...+.|+
T Consensus 137 ----~p~l~kt~~~d~rLF~~L~t~Wsf~pg~~-----------~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v 201 (227)
T KOG3177|consen 137 ----KPHLTKTVCADGRLFNHLITIWSFKPGPN-----------IPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMV 201 (227)
T ss_pred ----cccceEEeeccccHHHhhhheeeeccCCC-----------CCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 1233444456664 999999999998652 246899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 022784 275 SCIREAAKKLINE 287 (292)
Q Consensus 275 ~alr~rAE~~~~~ 287 (292)
.||.+||..+++-
T Consensus 202 ~AF~~ra~~~~gp 214 (227)
T KOG3177|consen 202 NAFEQRARKLYGP 214 (227)
T ss_pred HHHHHHHHHhhCc
Confidence 9999999998774
No 24
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.42 E-value=1.2e-11 Score=110.23 Aligned_cols=159 Identities=14% Similarity=0.256 Sum_probs=112.7
Q ss_pred CC-CeEEEEEEeCCCceEEEEEEEEcCCHHHHHH-HHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecceeeeEEE
Q 022784 104 GD-GVCIEIKKLGRNSRRIRSKIEIDASLDTVWH-ILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGIKF 180 (292)
Q Consensus 104 ~~-~v~V~v~~~~~~~r~I~asi~I~Appe~Vw~-vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~g~~f 180 (292)
++ |+.|+.+..++..+.++++..|++|+++|++ ++.|.+..++|.+.|.+++++++-++... ++.+..... ++.+
T Consensus 32 ~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~--~~~v 109 (208)
T cd08868 32 TTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAG--GGLV 109 (208)
T ss_pred cCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcC--CCcc
Confidence 55 9999999998866789999999999999985 67899999999999999999998554333 343321110 0111
Q ss_pred eeeeEEEeee--------------ecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEE
Q 022784 181 NAKGVLDCYE--------------KDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLS 246 (292)
Q Consensus 181 ~ar~vld~~E--------------~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVt 246 (292)
..|-.+.... .+....|. .+..|+.. .+.|.|.|+|.+++ .+.|.|+
T Consensus 110 s~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~-~~g~VR~~-------~~~~~~~i~p~~~~-----------~~~t~v~ 170 (208)
T cd08868 110 SPRDFVSLRHWGIRENCYLSSGVSVEHPAMPP-TKNYVRGE-------NGPGCWILRPLPNN-----------PNKCNFT 170 (208)
T ss_pred cccceEEEEEEEecCCeEEEEEEeccCCCCCC-CCCeEEEe-------ccccEEEEEECCCC-----------CCceEEE
Confidence 1111110000 00001111 11223333 34688999998642 3579999
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 247 YSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 247 y~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
|.++.+|++++|.++++..+...+...+.+||+++++
T Consensus 171 ~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 171 WLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999875
No 25
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=5.5e-12 Score=104.55 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=83.8
Q ss_pred EEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCe----EEE-EEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF----VRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 122 ~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~----~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+.++.|+||+++||+.++|.+++++|+|.+.+++++...++. .++ ...... ++.+ +.+.++++.+
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~----~~~~--~w~~~it~~~---- 71 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHF----GIPQ--RWTTEITEVE---- 71 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEec----CCce--EEEEEEEEEc----
Confidence 578899999999999999999999999999999998754432 122 122211 2111 2223333332
Q ss_pred CCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHH
Q 022784 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEG 264 (292)
Q Consensus 197 p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~ 264 (292)
+++.+.++++.|+|+.++++|.|++.+ ++|+|++.+++++.+.....++..
T Consensus 72 ---p~~~f~~~~~~G~~~~w~h~~~f~~~~--------------~gT~vt~~v~~~~p~g~lg~~~~~ 122 (137)
T cd07820 72 ---PPRRFVDEQVSGPFRSWRHTHRFEAIG--------------GGTLMTDRVEYRLPLGPLGRLAAP 122 (137)
T ss_pred ---CCCeEEEEeccCCchhCEEEEEEEECC--------------CceEEEEEEEEeCCchhHHHHHHH
Confidence 357899999999999999999999864 369999999999976555444433
No 26
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=1.4e-11 Score=99.61 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=94.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEE-EecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCC
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVV-EKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVl-er~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~ 198 (292)
.|+.++.|+||+++||++++|++++++|+|.+..++.. ...|.+......+..+. ...+. ..+.+.+
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~----~~v~~~~------ 68 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGP--PRSFK----PRVTEVE------ 68 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCC--cEEEE----EEEEEEc------
Confidence 37889999999999999999999999999999887765 34454443322111000 01111 2223322
Q ss_pred CCcceEEEEEEeCCcc--eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEec-CCCchHHHHHHHHHHHHHHHHH
Q 022784 199 GKKRDIEFKMIEGDFQ--LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRP-KLWLPVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 199 g~~r~I~f~~veGdFk--~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~veP-k~~lP~~Lv~~~l~~~i~~~L~ 275 (292)
++++|.|+...|+.. ...+.|.|++.++ ++|++++...+.. ..++...++...+.+.++.++.
T Consensus 69 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T cd07822 69 -PPRRLAWRGGLPFPGLLDGEHSFELEPLGD-------------GGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNE 134 (141)
T ss_pred -CCCEeEEEecCCCCcEeeEEEEEEEEEcCC-------------CcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHH
Confidence 358999998877532 4678999998743 4799888765542 1233456788899999999999
Q ss_pred HHHHHHH
Q 022784 276 CIREAAK 282 (292)
Q Consensus 276 alr~rAE 282 (292)
+|++.||
T Consensus 135 ~L~~~~E 141 (141)
T cd07822 135 ALKARAE 141 (141)
T ss_pred HHHHhhC
Confidence 9998875
No 27
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.40 E-value=1.5e-11 Score=99.85 Aligned_cols=135 Identities=17% Similarity=0.116 Sum_probs=95.5
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
|..++.|+||+++||++|+|++++++|+|.+..+.+....|+..+....+..+ ...... ..+.+.+ +
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g----~~~~~~--~~i~~~~-------~ 68 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDG----EEGWVS--GEVLEVE-------P 68 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCC----CEEecc--EEEEEEc-------C
Confidence 67889999999999999999999999999855555544455443332222111 111212 2223332 2
Q ss_pred cceEEEEEEeCC---cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGD---FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCI 277 (292)
Q Consensus 201 ~r~I~f~~veGd---Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~al 277 (292)
+++|.|+...++ +....+.|+|++.+ ++|+|+|..+..+.. .+.......+.+....+|..|
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~T~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07814 69 PRRLVFTWAFSDETPGPETTVTVTLEETG--------------GGTRLTLTHSGFPEE-DAEQEAREGMEEGWTGTLDRL 133 (139)
T ss_pred CCeEEEEecccCCCCCCceEEEEEEEECC--------------CCEEEEEEEEccChH-hHHHHHHhCHhhHHHHHHHHH
Confidence 578999988763 56778899998875 369999999987763 225566678888999999999
Q ss_pred HHHHHH
Q 022784 278 REAAKK 283 (292)
Q Consensus 278 r~rAE~ 283 (292)
|+.+|+
T Consensus 134 k~~~E~ 139 (139)
T cd07814 134 KALLEK 139 (139)
T ss_pred HHHhhC
Confidence 999884
No 28
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.32 E-value=3.2e-10 Score=101.69 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=114.1
Q ss_pred ccccCCCeEEEEEEeCC-CceEEEEEEEE-cCCHHHHHHHHHChhhhhccccCCceEEEEEecC--CeEEEEEEeeccee
Q 022784 100 QSLHGDGVCIEIKKLGR-NSRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKND--NFVRLYQIGQQNLA 175 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~-~~r~I~asi~I-~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g--~~~rv~qvg~~~l~ 175 (292)
...+++||.|+.+..++ +...+++...+ ++|++++++++.|.+..++|.+.+.+++++++.+ +...+++.....
T Consensus 25 l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P-- 102 (207)
T cd08911 25 PFIEKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWP-- 102 (207)
T ss_pred EEEEcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECC--
Confidence 45678999999999985 56689997777 9999999999999999999999999999999843 333334432211
Q ss_pred eeEEEeee-eEE-Eeeee--------------cccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccC
Q 022784 176 FGIKFNAK-GVL-DCYEK--------------DLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQ 239 (292)
Q Consensus 176 ~g~~f~ar-~vl-d~~E~--------------~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~ 239 (292)
|.+..| .++ ..... +....|. .+..|+. ..+.|.|.+++.... +
T Consensus 103 --~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~-~~g~VRv-------~~~~~~~~i~p~~~~---------~- 162 (207)
T cd08911 103 --KPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPE-SPKKVRV-------EDYWSYMVIRPHKSF---------D- 162 (207)
T ss_pred --CCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCC-CCCCEEE-------EEeEEEEEEEeCCCC---------C-
Confidence 111111 000 00000 0001111 0122333 346889999987420 0
Q ss_pred CCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 240 KFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 240 ~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
.++|++.|....+|+++||.++++.+..+.++..|..|++.+.+
T Consensus 163 ~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 163 EPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 24799999999999999999999999999999999999998865
No 29
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.32 E-value=3.3e-10 Score=102.04 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=113.3
Q ss_pred ccccCCCeEEEEEEeCCC-ceEEEEEEEE-cCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecceee
Q 022784 100 QSLHGDGVCIEIKKLGRN-SRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAF 176 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~-~r~I~asi~I-~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~ 176 (292)
...+++||.|+.++.+++ ...+++...| ++++++++++|.|.+..++|.+.+.+++++++-+.... ++.+-...
T Consensus 27 ~~~~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P--- 103 (222)
T cd08871 27 LKYNKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCP--- 103 (222)
T ss_pred EEEcCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECC---
Confidence 334688999999999875 4678998887 69999999999999999999999999999988543322 23221100
Q ss_pred eEEEeee---------------eEEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCC
Q 022784 177 GIKFNAK---------------GVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKF 241 (292)
Q Consensus 177 g~~f~ar---------------~vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~ 241 (292)
+.+..| +++. ........|. .+..|+.. .+.|-|.|++.++ +
T Consensus 104 -~pvs~RDfV~~r~~~~~~~~~vi~~-~sv~~~~~P~-~~g~VR~~-------~~~~g~~i~p~~~-------------~ 160 (222)
T cd08871 104 -KPLKNRDFVNLRSWLEFGGEYIIFN-HSVKHKKYPP-RKGFVRAI-------SLLTGYLIRPTGP-------------K 160 (222)
T ss_pred -CCCCCCeEEEEEEEEeCCCEEEEEe-ccccCCCCCC-CCCeEEeE-------EEccEEEEEECCC-------------C
Confidence 001111 0000 0000001111 12223333 2357799999864 4
Q ss_pred ceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022784 242 QTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKKLI 285 (292)
Q Consensus 242 ~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~~~ 285 (292)
+|+++|.++++|++++|.++++.++......+|.+|++.+++..
T Consensus 161 ~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 161 GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999853
No 30
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.29 E-value=2.6e-10 Score=102.72 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=104.2
Q ss_pred ccccCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecce----
Q 022784 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNL---- 174 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l---- 174 (292)
-..+++||.|+.+..++....+++...|++|+++||++|.|.+++++|.+.+++++|+++-++...+ +++.-...
T Consensus 26 l~~~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~ 105 (205)
T cd08874 26 YQCLEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLK 105 (205)
T ss_pred EEecCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCC
Confidence 4557899999999887766679999999999999999999999999999999999999986654443 44321110
Q ss_pred ------ee-eEEEeee-eEEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEE
Q 022784 175 ------AF-GIKFNAK-GVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLS 246 (292)
Q Consensus 175 ------~~-g~~f~ar-~vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVt 246 (292)
.+ .+..... .++.+...+....|..++..|+.+. +.|.|.++|.... ..+.|+|+
T Consensus 106 ~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~-------~~~gw~i~P~~~~----------g~~~t~vt 168 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEI-------LPSAWILEPVTVE----------GNQYTRVI 168 (205)
T ss_pred CCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeee-------EeeeEEEEECccC----------CCCcEEEE
Confidence 00 0000000 0111111111122211113455554 4789999997210 02479999
Q ss_pred EEEEEecC-CCchHHHHHHHHHHHHH
Q 022784 247 YSVDVRPK-LWLPVRLVEGRLCNEIK 271 (292)
Q Consensus 247 y~v~vePk-~~lP~~Lv~~~l~~~i~ 271 (292)
|.++++|+ +-+|.+|++..+.+...
T Consensus 169 y~~q~DPggg~iP~~l~N~~~~~~p~ 194 (205)
T cd08874 169 YIAQVALCGPDVPAQLLSSLSKRQPL 194 (205)
T ss_pred EEEEECCCCCCCCHHHHhHHHHhccH
Confidence 99999999 79999999987776544
No 31
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.25 E-value=7.9e-10 Score=99.29 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=105.2
Q ss_pred cCCCeEEEEEEeCC-CceEEEEEEEEcCCHHHHHHHHHChhhh--hccccCCceEEEEEecCCeEEE-EEEeecceeeeE
Q 022784 103 HGDGVCIEIKKLGR-NSRRIRSKIEIDASLDTVWHILTDYEKL--ADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGI 178 (292)
Q Consensus 103 ~~~~v~V~v~~~~~-~~r~I~asi~I~Appe~Vw~vLTDyE~y--PeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~ 178 (292)
.++|+.|+.++... ....++++..|++++++|+++|.|.+.+ ++|.+.|.+++++++-++...+ ++.--+. .+.
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~--~~~ 106 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSA--AMK 106 (208)
T ss_pred cCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchh--cCC
Confidence 66899999997522 2234889999999999999999999877 9999999999999986554333 3311110 000
Q ss_pred EEeeeeEEEeeeecccccCCCCcceEEEE--EEeCC--------cce----eEEEEEEEEccCCccccccccccCCCceE
Q 022784 179 KFNAKGVLDCYEKDLEIFPSGKKRDIEFK--MIEGD--------FQL----FEGKWSIEQFNGGKFEDSESLLSQKFQTT 244 (292)
Q Consensus 179 ~f~ar~vld~~E~~~~~~p~g~~r~I~f~--~veGd--------Fk~----feG~Wslep~~~g~~~~~~~~~~~~~~Tr 244 (292)
-+..|-.+...-.. ... ...|... .++-+ .+. ..|.|...+.+ +++|.
T Consensus 107 ~vs~RDfV~~~~~~--~~~---d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-------------~~~t~ 168 (208)
T cd08903 107 IISPRDFVDVVLVK--RYE---DGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-------------PDKTQ 168 (208)
T ss_pred CcCCCceEEEEEEE--ecC---CceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-------------CCceE
Confidence 02222111101000 001 1122222 12110 111 34566554433 25899
Q ss_pred EEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 245 LSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 245 Vty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
|+|.+.++|+++||.++++.++.+.+...+.+||+...+
T Consensus 169 v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 169 LVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998754
No 32
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.23 E-value=2.5e-09 Score=95.71 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=113.8
Q ss_pred ccccCCC----eEEEEEEeCC-CceEEEEEEEE-cCCHHHHHHHHHChhhhhccccCCceEEEEEecCC--eEEEEEEee
Q 022784 100 QSLHGDG----VCIEIKKLGR-NSRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN--FVRLYQIGQ 171 (292)
Q Consensus 100 ~~~~~~~----v~V~v~~~~~-~~r~I~asi~I-~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~--~~rv~qvg~ 171 (292)
...+++| +.|+.+..++ +...+++...+ ++|+++++++|.|.+..++|.+.+.+.++++..++ ...++.+..
T Consensus 26 ~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~ 105 (209)
T cd08870 26 QVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKK 105 (209)
T ss_pred EhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEE
Confidence 4457888 9999999885 56789999999 56999999999999999999999999999998664 323344322
Q ss_pred cceeeeEEEeee-e--------------EEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCcccccccc
Q 022784 172 QNLAFGIKFNAK-G--------------VLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESL 236 (292)
Q Consensus 172 ~~l~~g~~f~ar-~--------------vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~ 236 (292)
.. |.+..| . ++..........|. ...++. +.+.|.|.|++...+
T Consensus 106 ~P----~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~--~~~vRv-------~~~~~~~~i~p~~~~-------- 164 (209)
T cd08870 106 FP----FPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPR--SGRKRV-------DDYESSLVIRAVKGD-------- 164 (209)
T ss_pred CC----CcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCC--CCcEEE-------EEEEeEEEEEEecCC--------
Confidence 21 111111 0 01101000001110 022333 356889999998311
Q ss_pred ccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 237 LSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 237 ~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
+++|.+.|....+|++.||.+|++......+...|++|++.+.+
T Consensus 165 ---~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 165 ---GQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred ---CCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 25799999999999999999999999999999999999998854
No 33
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.23 E-value=5.6e-10 Score=99.35 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=103.3
Q ss_pred ccCCCeEEEEEEeCCC--ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCe-EEEEEEeecceeeeE
Q 022784 102 LHGDGVCIEIKKLGRN--SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF-VRLYQIGQQNLAFGI 178 (292)
Q Consensus 102 ~~~~~v~V~v~~~~~~--~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~-~rv~qvg~~~l~~g~ 178 (292)
.+++||+|+.++.+++ .+.++++..|+|++++|+++|.|.. ++|.+.+.+++++++-++. ...+.+.... +
T Consensus 25 ~~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p----~ 98 (197)
T cd08869 25 SSSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSM----A 98 (197)
T ss_pred ecCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCC----C
Confidence 3678999999999765 4678999999999999999998863 9999999999999985543 2233321111 1
Q ss_pred EEeee--eEEEeeeecccccCCCCcceEEEEEEe-------CC--cceeEEEEEEEEccCCccccccccccCCCceEEEE
Q 022784 179 KFNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIE-------GD--FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSY 247 (292)
Q Consensus 179 ~f~ar--~vld~~E~~~~~~p~g~~r~I~f~~ve-------Gd--Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty 247 (292)
.+..| +.+...... .++| .-.|.++.++ |- ...+.|.|.|+|.++ ++|+|+|
T Consensus 99 pv~~RDfV~~r~~~~~---~~~g-~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~-------------~~t~vty 161 (197)
T cd08869 99 PHPTRDYVVLRTWRTD---LPKG-ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGS-------------GKSRVTH 161 (197)
T ss_pred CCCCceEEEEEEEEec---CCCC-cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCC-------------CCeEEEE
Confidence 11111 111000000 0111 1123333332 11 134578999999864 4799999
Q ss_pred EEEEecCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022784 248 SVDVRPKLWLPVRLVEGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 248 ~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~ 279 (292)
.++++|++++|.++++.. ..-+..+|..||+
T Consensus 162 ~~~~Dp~G~iP~wl~N~~-~~~~~~~~~~l~~ 192 (197)
T cd08869 162 ICRVDLRGRSPEWYNKVY-GHLCARELLRIRD 192 (197)
T ss_pred EEEECCCCCCCceeecch-HhHHHHHHHHHHh
Confidence 999999999999997644 4777788888886
No 34
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.18 E-value=2.5e-09 Score=96.00 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=110.0
Q ss_pred ccccCCCeEEEEEEeCCC-ceEEEEEEEEc-CCHHHHHHHHHChhhhhccccCCceEEEEEecC-CeEEEEEEeecceee
Q 022784 100 QSLHGDGVCIEIKKLGRN-SRRIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NFVRLYQIGQQNLAF 176 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~-~r~I~asi~I~-Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g-~~~rv~qvg~~~l~~ 176 (292)
-..+++|+.|+.|..+++ ...+++...++ ++++++++++.|.+.+++|.+.|.+ ++++.+ +...+++.-...
T Consensus 29 l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~P--- 103 (207)
T cd08910 29 LLVESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYP--- 103 (207)
T ss_pred EEEecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcC---
Confidence 455789999999988764 67899999998 7999999999999999999999887 445433 222233321111
Q ss_pred eEEEeee-e---------------E-E-EeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCcccccccccc
Q 022784 177 GIKFNAK-G---------------V-L-DCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLS 238 (292)
Q Consensus 177 g~~f~ar-~---------------v-l-d~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~ 238 (292)
|.+..| . + + -.........|. .+..|+.. .+.|.|.|++.++
T Consensus 104 -wPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~-~~~~VRv~-------~~~~~~~i~p~~~----------- 163 (207)
T cd08910 104 -FPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPE-KPGVIRVK-------QYKQSLAIESDGK----------- 163 (207)
T ss_pred -CCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCC-CCCCEEEE-------EEEEEEEEEeCCC-----------
Confidence 111111 0 0 0 000000001221 12345554 4588999998754
Q ss_pred CCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 239 QKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 239 ~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
++|+++|....+|+++||.++++.+..+.++..|++|++.+.+
T Consensus 164 --~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 164 --KGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred --CceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999998864
No 35
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.15 E-value=2.2e-09 Score=98.70 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=104.6
Q ss_pred ccccCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeE-
Q 022784 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGI- 178 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~- 178 (292)
-..+++||.|+++. +.+...+++++.+++|+++++++|.|.+++++|.+.+.+++++++-+..-.+|++-.-. |
T Consensus 60 l~~dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pP----w~ 134 (236)
T cd08914 60 VTSTVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPI----VN 134 (236)
T ss_pred EEEccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCC----CC
Confidence 56689999999996 44567899999999999999999999999999999999999999855332365532111 1
Q ss_pred EEeee-----------------eEEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCC
Q 022784 179 KFNAK-----------------GVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKF 241 (292)
Q Consensus 179 ~f~ar-----------------~vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~ 241 (292)
....| .++.+...+...+|. .+..++.+. .+.|. .|++.++ +
T Consensus 135 Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp-~kg~VRv~~------~~~G~-~I~pl~~-------------~ 193 (236)
T cd08914 135 NDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPP-SPQYIRSEI------ICAGF-LIHAIDS-------------N 193 (236)
T ss_pred CCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCC-CCCcEEeEE------EEEEE-EEEEcCC-------------C
Confidence 11111 111111111112221 122344433 15676 9999864 5
Q ss_pred ceEEEEEEEEecCCCchHHHHH-HHHHHHHHHHHHHHHHHHH
Q 022784 242 QTTLSYSVDVRPKLWLPVRLVE-GRLCNEIKTNLSCIREAAK 282 (292)
Q Consensus 242 ~TrVty~v~vePk~~lP~~Lv~-~~l~~~i~~~L~alr~rAE 282 (292)
+|+|+|.++++| +++|.++++ ......+..+..+-.+..|
T Consensus 194 ~~~VtY~~~~dP-g~lp~~~~n~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd08914 194 SCTVSYFNQISA-SILPYFAGNLGGWSKSIEETAASCIQFLE 234 (236)
T ss_pred cEEEEEEEEcCC-ccchheEEecchhhhHHHHHHHHHHHHHh
Confidence 899999999999 999998754 4456666666666555544
No 36
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.15 E-value=4.1e-09 Score=96.70 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=116.5
Q ss_pred ccccCCCeEEEEEEeCCCc-e--EEEEEEEEc-CCHHHHHHHHHChhhhhccccCCceEEEEEecCC-eEEEEEEeecce
Q 022784 100 QSLHGDGVCIEIKKLGRNS-R--RIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQIGQQNL 174 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~~-r--~I~asi~I~-Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~-~~rv~qvg~~~l 174 (292)
-..+++|+.|+.+..+++. . .+++...|+ ++++++.++|.|.+.+.+|...+.+++++++-+. ...+++......
T Consensus 30 l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~Pw 109 (235)
T cd08872 30 LFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVW 109 (235)
T ss_pred EEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCC
Confidence 3447899999999988753 3 589999999 9999999999999999999999999999998543 333455311100
Q ss_pred ee---eEEEeee----------------eEEEeeeecccccCCCCcceEEEEEEe----C-CcceeEEEEEEEEccCCcc
Q 022784 175 AF---GIKFNAK----------------GVLDCYEKDLEIFPSGKKRDIEFKMIE----G-DFQLFEGKWSIEQFNGGKF 230 (292)
Q Consensus 175 ~~---g~~f~ar----------------~vld~~E~~~~~~p~g~~r~I~f~~ve----G-dFk~feG~Wslep~~~g~~ 230 (292)
.+ -+.+... +++. ........|. .+.-|+..+.. + -...-.|.|.+++. +
T Consensus 110 Pvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~-~Sv~h~~~P~-~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~-~--- 183 (235)
T cd08872 110 PAAQRDALFVSHIRKIPALEEPNAHDTWIVCN-FSVDHDSAPL-NNKCVRAKLTVAMICQTFVSPPDGNQEITRD-N--- 183 (235)
T ss_pred CCCCcEEEEEEEEEecCccccccCCCeEEEEE-ecccCccCCC-CCCeEEEEEEeeeeeeeeeecCCCcccccCC-C---
Confidence 00 0000000 1111 0011112232 13445555422 1 12222377888873 2
Q ss_pred ccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022784 231 EDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKKLIN 286 (292)
Q Consensus 231 ~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~~~~ 286 (292)
++|+|+|..+++|++++|.++++.+.+++.+..|+.|-...+....
T Consensus 184 ----------~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 184 ----------ILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEKTK 229 (235)
T ss_pred ----------CeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999988876543
No 37
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.09 E-value=1.9e-08 Score=85.91 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=105.3
Q ss_pred ccCCCeEEEEEEeCC-CceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecceeeeEE
Q 022784 102 LHGDGVCIEIKKLGR-NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIK 179 (292)
Q Consensus 102 ~~~~~v~V~v~~~~~-~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~~ 179 (292)
-.++|+.|+.++.++ +...+++...|++++++|+++|.|.+.+++|.|.+..++++++.++...+ +++-... +.
T Consensus 21 ~~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p----~p 96 (193)
T cd00177 21 KEKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPP----WP 96 (193)
T ss_pred EECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCC----Cc
Confidence 356799999999886 46689999999999999999999999999999999999999986653332 3321111 11
Q ss_pred EeeeeEEEeeeecccccCCCCcceEEEEEEeC--------Cc--ceeEEEEEEEEccCCccccccccccCCCceEEEEEE
Q 022784 180 FNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEG--------DF--QLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSV 249 (292)
Q Consensus 180 f~ar~vld~~E~~~~~~p~g~~r~I~f~~veG--------dF--k~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v 249 (292)
+..|-.+-..... ..+++ .--+..+.++. -. ..+.|-|.|++.++ +.|+++|.+
T Consensus 97 ~~~Rdfv~~~~~~--~~~~~-~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~-------------~~~~vt~~~ 160 (193)
T cd00177 97 VSPRDFVYLRRRR--KLDDG-TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP-------------GKTKVTYVL 160 (193)
T ss_pred cCCccEEEEEEEE--EcCCC-eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC-------------CCEEEEEEE
Confidence 1111000000000 00000 00111111111 01 12357799999854 589999999
Q ss_pred EEecCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022784 250 DVRPKLWLPVRLVEGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 250 ~vePk~~lP~~Lv~~~l~~~i~~~L~alr~ 279 (292)
.++|++++|.++++..+.+.+...++.++.
T Consensus 161 ~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 161 QVDPKGSIPKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred eeCCCCCccHHHHHhhhhhccHHHHHHHHH
Confidence 999999999999999998877777766554
No 38
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.08 E-value=2.7e-09 Score=87.91 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=82.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEE-----ecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVE-----KNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVle-----r~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~ 194 (292)
+|+.++.|+||+++||++++|+++||+|+|......+.. +.|+..+. .....+. .+.+..+ +.+.+
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~g~--~~~~~~~----v~~~~-- 71 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRM-AMRLDGG--PYRITNH----VVAFE-- 71 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEE-EEEcCCC--ceEEEEE----EEEEC--
Confidence 478899999999999999999999999998643322221 22333322 2211111 1223222 22322
Q ss_pred ccCCCCcceEEEEEE-eC-CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHH--HHHHHHHHH
Q 022784 195 IFPSGKKRDIEFKMI-EG-DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRL--VEGRLCNEI 270 (292)
Q Consensus 195 ~~p~g~~r~I~f~~v-eG-dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~L--v~~~l~~~i 270 (292)
++++|.|++. .| ........|.|++.++ ++|+|++...+... ..+..+ +.......+
T Consensus 72 -----p~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------------g~T~vt~~~~~~g~-~~~~~~~~~~~~~~~g~ 132 (144)
T cd07825 72 -----ENRLIAWRPGPAGQEPGGHRWRWELEPIGP-------------GRTRVTETYDWSAV-TDLKELLGFPAFPEVQL 132 (144)
T ss_pred -----CCCEEEEEccCCCCCCCceeEEEEEEECCC-------------CcEEEEEEEeccCC-hhhhhccccCCCCHHHH
Confidence 3578999865 22 2234566788888653 47999888765443 222222 224467788
Q ss_pred HHHHHHHHHHHH
Q 022784 271 KTNLSCIREAAK 282 (292)
Q Consensus 271 ~~~L~alr~rAE 282 (292)
...|..|++.+|
T Consensus 133 ~~~l~~L~~~~~ 144 (144)
T cd07825 133 EASLDRLATLAE 144 (144)
T ss_pred HHHHHHHHHHhC
Confidence 888888888764
No 39
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.06 E-value=1.5e-08 Score=88.97 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=109.4
Q ss_pred CCCeEEEEEEeCC--CceEEEEEEEEcCCHHH-HHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecceeeeEE
Q 022784 104 GDGVCIEIKKLGR--NSRRIRSKIEIDASLDT-VWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIK 179 (292)
Q Consensus 104 ~~~v~V~v~~~~~--~~r~I~asi~I~Appe~-Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~~ 179 (292)
++|..++-+..++ +...+++...|++++++ +-+++.|.+..++|.+.+.++++++.-++...+ +.+-... + ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~--~-~p 104 (206)
T smart00234 28 ENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFV--A-GP 104 (206)
T ss_pred CCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecc--c-Cc
Confidence 6777888887765 46789999999999996 778999999999999999999999985543333 2221110 0 01
Q ss_pred EeeeeEEEeeeecccccCCCCcceEEEEEEeCC----------cceeEEEEEEEEccCCccccccccccCCCceEEEEEE
Q 022784 180 FNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEGD----------FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSV 249 (292)
Q Consensus 180 f~ar~vld~~E~~~~~~p~g~~r~I~f~~veGd----------Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v 249 (292)
+..|-.+...... ...++ ...|..+.++.+ -..+.|.|.|++.++ +.|+++|..
T Consensus 105 ~~~RDfv~~r~~~--~~~~~-~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~-------------~~t~vt~~~ 168 (206)
T smart00234 105 VSPRDFVFVRYWR--ELVDG-SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN-------------GPSKVTWVS 168 (206)
T ss_pred CCCCeEEEEEEEE--EcCCC-cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC-------------CCeEEEEEE
Confidence 1112111000000 00110 112222222111 134578899999865 359999999
Q ss_pred EEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 250 DVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKKL 284 (292)
Q Consensus 250 ~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~~ 284 (292)
+++|++++|.++++..+...+...+..+++.+++.
T Consensus 169 ~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 169 HADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred EEecCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877653
No 40
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.04 E-value=3.9e-08 Score=88.74 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=99.5
Q ss_pred cCCCeEEEEEEeCCC--ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecc------
Q 022784 103 HGDGVCIEIKKLGRN--SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQN------ 173 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~--~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~------ 173 (292)
..+++++..+|...+ .+.+++++.|+|++++|+++|.|. ++.|.+.+.+++++++-+.... +|++....
T Consensus 34 ~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~R 111 (204)
T cd08908 34 TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPAR 111 (204)
T ss_pred CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCc
Confidence 367889999988665 468999999999999999999888 8999999999999998554333 34431111
Q ss_pred --eeeeEEE---eee-eEEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEE
Q 022784 174 --LAFGIKF---NAK-GVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSY 247 (292)
Q Consensus 174 --l~~g~~f---~ar-~vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty 247 (292)
+.++... ... .++...-...+.+| .+.|+. ..+.|.|.|+|.+. ++|+|+|
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P---~~~VR~-------~~~~~~w~i~P~g~-------------g~t~vty 168 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAP---VAGVRV-------NVLLSRYLIEPCGS-------------GKSKLTY 168 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCC---cCceEE-------EEEeeEEEEEECCC-------------CcEEEEE
Confidence 0000000 000 11111101111222 112322 34588999999864 4899999
Q ss_pred EEEEecCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022784 248 SVDVRPKLWLPVRLVEGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 248 ~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~ 279 (292)
.++++|++.+|.++++ ..-.-+...|..||+
T Consensus 169 i~~~DPgG~iP~W~~N-~~g~~~~~~~~~~r~ 199 (204)
T cd08908 169 MCRIDLRGHMPEWYTK-SFGHLCAAEVVKIRD 199 (204)
T ss_pred EEEeCCCCCCcHHHHh-hHHHHHHHHHHHHHh
Confidence 9999999999999986 444555555666654
No 41
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.04 E-value=5.3e-08 Score=86.75 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=107.7
Q ss_pred cCCCeEEEEEEeCCC-ceEEEEEEEEcCCHHHHHHHHHC--hhhhhccccCCceEEEEEecCCeEE-EEEEeecceeeeE
Q 022784 103 HGDGVCIEIKKLGRN-SRRIRSKIEIDASLDTVWHILTD--YEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGI 178 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~-~r~I~asi~I~Appe~Vw~vLTD--yE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~g~ 178 (292)
.++|+.|+.++..+. ...++++..|++++++|+++|.| .+..++|.+.+.+++++++-+.... ++...-... .++
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~-~~~ 107 (206)
T cd08867 29 TVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAA-MGL 107 (206)
T ss_pred cCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccc-cCc
Confidence 678999999865443 35799999999999999999999 8999999999999999998553322 332110000 000
Q ss_pred EEeeee---------------EEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCce
Q 022784 179 KFNAKG---------------VLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQT 243 (292)
Q Consensus 179 ~f~ar~---------------vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~T 243 (292)
+..|- ++...-......|. .+..|+..+ ..|-|.++|.+++ .++|
T Consensus 108 -vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~-~~~~VR~~~-------~~~g~~i~p~~~~-----------~~~t 167 (206)
T cd08867 108 -ISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPP-TPGFVRGYN-------HPCGYFCSPLKGS-----------PDKS 167 (206)
T ss_pred -cCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCC-CCCcEEEEe-------ecCEEEEEECCCC-----------CCce
Confidence 11110 00000000001111 122344443 3578999987532 2579
Q ss_pred EEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 244 TLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAA 281 (292)
Q Consensus 244 rVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rA 281 (292)
.++|.+.++|++++|.++++..+.+.+...+.+||++.
T Consensus 168 ~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 168 FLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874
No 42
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.03 E-value=1.1e-08 Score=94.39 Aligned_cols=144 Identities=12% Similarity=0.087 Sum_probs=97.6
Q ss_pred cccCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEE
Q 022784 101 SLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF 180 (292)
Q Consensus 101 ~~~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f 180 (292)
..+++||.|+.+. +.....+++++.|++|+++|+++|.|.+++++|.+.+.+++++++-+....++++-.... .+..
T Consensus 64 ~~~~~gI~Vyt~~-~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~--~~pv 140 (240)
T cd08913 64 SSEKNQVRLYTLE-EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSL--SGHG 140 (240)
T ss_pred EEccCCEEEEEEe-CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCC--CCCC
Confidence 3457999999955 334467899999999999999999999999999999999999998554334565421110 0011
Q ss_pred eee-e------------------EEEeeeecccccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCC
Q 022784 181 NAK-G------------------VLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKF 241 (292)
Q Consensus 181 ~ar-~------------------vld~~E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~ 241 (292)
..| . .+.....+ + .|. .+..|+.+ .+.|.|.|.+.++ +
T Consensus 141 s~RDfV~~~s~~~~~~~g~~yii~~~sv~~P-~-~Pp-~kgyVR~~-------~~~ggw~i~p~~~-------------~ 197 (240)
T cd08913 141 KPQDFVILASRRKPCDNGDPYVIALRSVTLP-T-HPP-TPEYTRGE-------TLCSGFCIWEESD-------------Q 197 (240)
T ss_pred CCCeEEEEEEEEeccCCCccEEEEEEEeecC-C-CCC-CCCcEEee-------ecccEEEEEECCC-------------C
Confidence 111 0 11111111 0 121 12234333 3578999999864 4
Q ss_pred ceEEEEEEEEecCCCchHHHHHHHHHHHHH
Q 022784 242 QTTLSYSVDVRPKLWLPVRLVEGRLCNEIK 271 (292)
Q Consensus 242 ~TrVty~v~vePk~~lP~~Lv~~~l~~~i~ 271 (292)
.|+|+|..+.+|+ .||.++++..+.+...
T Consensus 198 ~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 198 LTKVSYYNQATPG-VLPYISTDIAGLSSEF 226 (240)
T ss_pred cEEEEEEEEeCCc-cccHHHhhhhhhccch
Confidence 7999999999998 9999999877766443
No 43
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.93 E-value=1.1e-07 Score=87.53 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=88.5
Q ss_pred ccccCCCeEEEEEEeCCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEE-EEEEeecceeeeE
Q 022784 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGI 178 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~r-v~qvg~~~l~~g~ 178 (292)
-..+++||.|+.+. +.+...++++..|++|+++|+++|.|.+.+++|.+.+.+++++++-++... +++..-. .|
T Consensus 59 l~~~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~----Pw 133 (235)
T cd08873 59 VASSTTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPS----LT 133 (235)
T ss_pred EEEcCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCC----CC
Confidence 45688999999998 455667999999999999999999999999999999999999998654433 3443111 01
Q ss_pred EEeee--eEEEeeeecccccCCCCcceEEEEEEe-------CC---cceeEEEEEEEEccCCccccccccccCCCceEEE
Q 022784 179 KFNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIE-------GD---FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLS 246 (292)
Q Consensus 179 ~f~ar--~vld~~E~~~~~~p~g~~r~I~f~~ve-------Gd---Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVt 246 (292)
.+..| +++.....+ .+++..-.|.++.+. -. ...+.|-|.|.|.++ ++|.|+
T Consensus 134 Pvk~RDfV~~~s~~~~---~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~-------------~~t~Vt 197 (235)
T cd08873 134 SEKPNDFVLLVSRRKP---ATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCG-------------TCTEVS 197 (235)
T ss_pred CCCCceEEEEEEEEec---cCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCC-------------CcEEEE
Confidence 11111 001001000 000000122333332 00 144578999999864 479999
Q ss_pred EEEEEecCC
Q 022784 247 YSVDVRPKL 255 (292)
Q Consensus 247 y~v~vePk~ 255 (292)
|.++++|+.
T Consensus 198 Y~~~~dPg~ 206 (235)
T cd08873 198 YYNETNPKL 206 (235)
T ss_pred EEEEcCCCc
Confidence 999999995
No 44
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.85 E-value=4.4e-08 Score=86.52 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=98.7
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 117 NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 117 ~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+-..++.++.|++|+++||++-.|+|++|.||.++.+++|++....+-.+.-.+ + ..+...++. ++
T Consensus 68 ~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkrSrW~~~ap~--g--~~v~Wea~i----t~------ 133 (217)
T COG5637 68 KPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKRSRWKANAPL--G--LEVEWEAEI----TK------ 133 (217)
T ss_pred CceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCccceeEcCCC--C--ceEEEeehh----hc------
Confidence 355789999999999999999999999999999999999997444322111101 0 111222222 21
Q ss_pred CCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHH----HHHH
Q 022784 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCN----EIKT 272 (292)
Q Consensus 197 p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~----~i~~ 272 (292)
+.+..+|.|+.++|---...|.-+|.+.++ +.|+|...+.+.|.+++...++.+++-+ .|..
T Consensus 134 -d~~~e~I~W~Sl~Ga~v~NsG~VrF~~~pg-------------~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~ 199 (217)
T COG5637 134 -DIPGERIQWESLPGARVENSGAVRFYDAPG-------------DSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQD 199 (217)
T ss_pred -cCCCcEEeeecCCCCcCCCCccEEeeeCCC-------------CceEEEEEEEecCCccHHHHHHHHHhccchHHHHHH
Confidence 223679999999994334488999998764 4699999999999999888776666555 4555
Q ss_pred HHHHHHHHHHH
Q 022784 273 NLSCIREAAKK 283 (292)
Q Consensus 273 ~L~alr~rAE~ 283 (292)
-|+.||+.+|.
T Consensus 200 DL~RFk~~~e~ 210 (217)
T COG5637 200 DLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHc
Confidence 56667766665
No 45
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=98.82 E-value=2.7e-06 Score=74.47 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=104.2
Q ss_pred CCCeEEEEEEeCC----CceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEe-cCCeEEEEEEeecceeeeE
Q 022784 104 GDGVCIEIKKLGR----NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK-NDNFVRLYQIGQQNLAFGI 178 (292)
Q Consensus 104 ~~~v~V~v~~~~~----~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler-~g~~~rv~qvg~~~l~~g~ 178 (292)
+.+..++.++... ....+++...|++++++++..+.|-.. +|.+.+.++++++. +++....+.+....+ +.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~--~~ 102 (206)
T PF01852_consen 27 KKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPW--PG 102 (206)
T ss_dssp ETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CT--TT
T ss_pred cCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccC--CC
Confidence 3455555555532 467899999999999988888888777 99999999999998 444332333211100 00
Q ss_pred EEeee--eEEEeeeecccccCCCCcceEEEEEEeCC---------c--ceeEEEEEEEEccCCccccccccccCCCceEE
Q 022784 179 KFNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIEGD---------F--QLFEGKWSIEQFNGGKFEDSESLLSQKFQTTL 245 (292)
Q Consensus 179 ~f~ar--~vld~~E~~~~~~p~g~~r~I~f~~veGd---------F--k~feG~Wslep~~~g~~~~~~~~~~~~~~TrV 245 (292)
.+..| +.+..... ..++ ..-|..+.++.+ . ..+.+.|.|++.++ +.|+|
T Consensus 103 p~~~RDfv~~~~~~~----~~~~-~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~-------------~~~~v 164 (206)
T PF01852_consen 103 PVSPRDFVFLRSWRK----DEDG-TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD-------------GRTRV 164 (206)
T ss_dssp TSSEEEEEEEEEEEE----CTTS-EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT-------------CEEEE
T ss_pred CCCCcEEEEEEEEEE----eccc-eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC-------------CCceE
Confidence 11111 11111111 0111 122333333211 1 24568899999875 35999
Q ss_pred EEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 246 SYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 246 ty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
+|..+++|++++|.++++.++...+...++.++++.++
T Consensus 165 t~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 165 TYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKK 202 (206)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 46
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.79 E-value=4.6e-07 Score=76.97 Aligned_cols=112 Identities=12% Similarity=0.312 Sum_probs=77.9
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhh-h-hccccCCceEEEEEecCC--eEEEEEEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEK-L-ADFVPNLAVSQVVEKNDN--FVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~-y-PeFiP~v~~srVler~g~--~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
.++.++.|+||+++||+++.|+++ + +.|.|.++++++++.+++ .+|....+..+ ..+ ....+ ++...
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~-~~kE~--l~~~D----- 72 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVK-YVKER--IDAVD----- 72 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cce-EEEEE--EEEEc-----
Confidence 478899999999999999999994 5 568899999999876532 34432221110 000 01111 11111
Q ss_pred cCCCCcceEEEEEEeCC-----cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCC
Q 022784 196 FPSGKKRDIEFKMIEGD-----FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLW 256 (292)
Q Consensus 196 ~p~g~~r~I~f~~veGd-----Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~ 256 (292)
+ ..+.|.|++++|+ |+.|.+..+|.+.++ ++|.+.|.+++++...
T Consensus 73 -~--~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~-------------~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 73 -E--ENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGD-------------GGCVVKWTIEYEKKGD 122 (148)
T ss_pred -c--cccEEEEEEEecccccCceEEEEEEEEEEECCC-------------CCEEEEEEEEEEECCC
Confidence 1 2689999999995 567889999998743 5799999999998765
No 47
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.76 E-value=1.6e-06 Score=72.84 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=80.2
Q ss_pred EEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE-EEEeecceeeeEEEeeeeEEEeeeecccccCCCCc
Q 022784 123 SKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKK 201 (292)
Q Consensus 123 asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv-~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~~ 201 (292)
+++.|++|+++||+.|+|++++..-+|+|...+.+. +.... ..++... +...|..++. +.+.+ +. ..
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~--i~~~~~g~~~--~~~~~----~~-~~ 68 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGP--IKGTFDGEVR--ITEID----PP-ES 68 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCC--CEEEEEEEEE--EEEEE----TT-TE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEecc--EEEEEEEEEE--EEEcC----CC-cc
Confidence 468899999999999999999999999999988765 33322 2333333 2456655543 34433 11 11
Q ss_pred ceEEEEEEeCC-cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 022784 202 RDIEFKMIEGD-FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREA 280 (292)
Q Consensus 202 r~I~f~~veGd-Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~r 280 (292)
..|.++-.... --...+.-.+...++ ++|+|+|..+++..+++- .+.++.+....+.+++.|-+.
T Consensus 69 ~~~~~~g~g~~~~~~~~~~~~~~~~~~-------------~~T~v~~~~~~~~~G~la-~~g~~~i~~~~~~l~~~f~~~ 134 (140)
T PF06240_consen 69 YTLEFEGRGRGGGSSASANITLSLEDD-------------GGTRVTWSADVEVGGPLA-SLGQRLIESVARRLIEQFFEN 134 (140)
T ss_dssp EEEEEEEEECTCCEEEEEEEEEEECCC-------------TCEEEEEEEEEEEECHHH-HC-HHHHHHHHHHHHHHHHHH
T ss_pred eEeeeeccCCccceEEEEEEEEEcCCC-------------CCcEEEEEEEEEEccCHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 22555554322 222234444444332 239999999999988653 344456666666666555554
Q ss_pred HHH
Q 022784 281 AKK 283 (292)
Q Consensus 281 AE~ 283 (292)
.++
T Consensus 135 l~~ 137 (140)
T PF06240_consen 135 LER 137 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 48
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.70 E-value=1.3e-06 Score=75.02 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=83.5
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE---EEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL---YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv---~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+++.+..|++||++||+.|+|.|.+.+-+|+|.+.+. .++.... ..+|. ++-+|..++.+. +.+
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~---~g~e~~~~v~l~ig~----l~~~~~g~~~~~--~v~---- 68 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVET---NGDEYTAKVKLKIGP----LKGTFSGRVRFV--NVD---- 68 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeee---cCCeEEEEEEEeecc----eeEEEEEEEEEc--ccc----
Confidence 4678999999999999999999999999999999754 4454332 13332 355676665432 111
Q ss_pred CCCCcceEEEEEEeC---CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFKMIEG---DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTN 273 (292)
Q Consensus 197 p~g~~r~I~f~~veG---dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~ 273 (292)
+ +++.|.++--.| -|-.+...-.+++.+ .+|+|+|.++.+-++.+ ..|..+.++...+.+
T Consensus 69 ~--~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g--------------~gt~v~w~~~~~~gg~l-aqlGsr~i~~~~~kl 131 (146)
T COG3427 69 E--PPRSITINGSGGGAAGFADGTVDVQLEPSG--------------EGTRVNWFADANVGGKL-AQLGSRLIDSVARKL 131 (146)
T ss_pred C--CCcEEEEEeecccccceeeeeeEEEEEEcC--------------CCcEEEEEEEccccHHH-HHHhHHHHHHHHHHH
Confidence 1 356777775542 355556666676654 35999999999887643 344445555555544
Q ss_pred HHH
Q 022784 274 LSC 276 (292)
Q Consensus 274 L~a 276 (292)
+..
T Consensus 132 i~~ 134 (146)
T COG3427 132 INR 134 (146)
T ss_pred HHH
Confidence 433
No 49
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.69 E-value=1.8e-06 Score=78.10 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=98.4
Q ss_pred cCCCeEEEEEEeCCC--ceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEE
Q 022784 103 HGDGVCIEIKKLGRN--SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF 180 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~--~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f 180 (292)
..+++++.-.+..++ .+.+++++.|+++|++|...|.+ ..++|...+.+++++++-+....+.+...... ..+
T Consensus 34 ~~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~---~P~ 108 (205)
T cd08909 34 SSDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCM---APH 108 (205)
T ss_pred CcCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecC---CCC
Confidence 467888888887664 57899999999999999998877 58999999999999998554222221111111 001
Q ss_pred eee--eEEEeeeecccccCCCCcceEEEEEEeCC---------cceeEEEEEEEEccCCccccccccccCCCceEEEEEE
Q 022784 181 NAK--GVLDCYEKDLEIFPSGKKRDIEFKMIEGD---------FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSV 249 (292)
Q Consensus 181 ~ar--~vld~~E~~~~~~p~g~~r~I~f~~veGd---------Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v 249 (292)
..| ++++.... .++.| .-.|..+.++.+ ...+.|.|.|+|.+. ++|+|+|..
T Consensus 109 ~~RD~v~~R~w~~---~~~~G-~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~-------------g~trvt~i~ 171 (205)
T cd08909 109 PSRDFVVLRSWRT---DLPKG-ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS-------------GKSRLTHIC 171 (205)
T ss_pred CCCEEEEEEEEEE---eCCCC-cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC-------------CCEEEEEEE
Confidence 111 11111000 01122 112222222211 123467899999865 479999999
Q ss_pred EEecCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022784 250 DVRPKLWLPVRLVEGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 250 ~vePk~~lP~~Lv~~~l~~~i~~~L~alr~ 279 (292)
.++|++++|.++.+ .+-.-+...|..||+
T Consensus 172 ~vDpkG~~P~W~~n-~~g~~~~~~~~~~r~ 200 (205)
T cd08909 172 RVDLKGHSPEWYNK-GFGHLCAAEAARIRN 200 (205)
T ss_pred EecCCCCChHHHHH-hHHHHHHHHHHHHHh
Confidence 99999999999985 555566666666664
No 50
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.66 E-value=3.7e-07 Score=77.85 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccc
Q 022784 115 GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (292)
Q Consensus 115 ~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~ 194 (292)
.++.+.|..++.|+||+++||++|+|.+++++|.|.. ..-.+.|+..+. +.+... ...+. ..+.+.+
T Consensus 7 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~-~~~~~~---~~~~~----~~v~e~~-- 73 (157)
T cd08899 7 LDGGATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEF-VMDDEE---GPNAT----GTILACE-- 73 (157)
T ss_pred cCCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEE-EecCCC---CCccc----eEEEEEc--
Confidence 4566889999999999999999999999999999932 111223433332 111100 01111 1222322
Q ss_pred ccCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHH
Q 022784 195 IFPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNL 274 (292)
Q Consensus 195 ~~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L 274 (292)
++++|.|+...++ ......|.|++.+ ++|+|+|..+..+.. -....+..+....|
T Consensus 74 -----p~~~l~~~~~~~~-~~~~~~~~l~~~~--------------~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L 128 (157)
T cd08899 74 -----PPRLLAFTWGEGG-GESEVRFELAPEG--------------DGTRLTLTHRLLDER-----FGAGAVGAGWHLCL 128 (157)
T ss_pred -----CCcEEEEEecCCC-CCceEEEEEEEcC--------------CCEEEEEEEeccCch-----hhhhhhcccHHHHH
Confidence 2578888887655 3335677777653 479999998886654 23356677888899
Q ss_pred HHHHHHHHHHhh
Q 022784 275 SCIREAAKKLIN 286 (292)
Q Consensus 275 ~alr~rAE~~~~ 286 (292)
..|++.+|+...
T Consensus 129 ~~Lk~~~e~~~~ 140 (157)
T cd08899 129 DVLEAALEGGPP 140 (157)
T ss_pred HHHHHHHcCCCC
Confidence 999999987543
No 51
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.65 E-value=7.6e-07 Score=72.12 Aligned_cols=129 Identities=15% Similarity=0.058 Sum_probs=80.9
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
++.++.|+|||++||++++|.++|++|.+... ...-.+.|+.......+.. ...+.. .+.+.+ +
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~~----~~~~~~----~v~~~~-------~ 65 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDDG----TVDVEG----EVLESD-------P 65 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCCc----ccccce----EEEEec-------C
Confidence 56789999999999999999999999998732 1111234444332211100 011111 122211 2
Q ss_pred cceEEEEEEeCC------cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGD------FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNL 274 (292)
Q Consensus 201 ~r~I~f~~veGd------Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L 274 (292)
+++|.|+...+. .......|.|++.+ ++|+|++..+..+. .......++++...+|
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~--------------~~t~l~~~~~~~~~----~~~~~~~~~~gw~~~l 127 (136)
T cd08893 66 PRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVG--------------DVVKLTVTHDGFPP----GSPTLEGVSGGWPAIL 127 (136)
T ss_pred CCeEEEEEecCCCcccCCCCCEEEEEEEEecC--------------CcEEEEEEecCCCC----chhHHHhhhcCHHHHH
Confidence 577887765322 22457788888754 36998888775433 2245567788899999
Q ss_pred HHHHHHHHH
Q 022784 275 SCIREAAKK 283 (292)
Q Consensus 275 ~alr~rAE~ 283 (292)
..|++.+|.
T Consensus 128 ~~Lk~~~e~ 136 (136)
T cd08893 128 SSLKTLLET 136 (136)
T ss_pred HHHHHHhcC
Confidence 999998873
No 52
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.65 E-value=4.1e-06 Score=75.60 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=106.2
Q ss_pred cCCCeEEEEEEe-CCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEe-cCCeEEEEEEeecceeeeEEE
Q 022784 103 HGDGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK-NDNFVRLYQIGQQNLAFGIKF 180 (292)
Q Consensus 103 ~~~~v~V~v~~~-~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler-~g~~~rv~qvg~~~l~~g~~f 180 (292)
.++++.|+.+.. +....-.+++..|++++++||+.+.|.+...+|-+.|.+.+++++ +++....+.+..... .++ +
T Consensus 29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~-~~~-v 106 (204)
T cd08904 29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFA-MGS-I 106 (204)
T ss_pred cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEeccccc-CCc-c
Confidence 558999999975 556678999999999999999999999999999999999999998 444444443322100 011 2
Q ss_pred eeeeEEEeeeec-cc-----------ccCCCC--cceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEE
Q 022784 181 NAKGVLDCYEKD-LE-----------IFPSGK--KRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLS 246 (292)
Q Consensus 181 ~ar~vld~~E~~-~~-----------~~p~g~--~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVt 246 (292)
..|-.+++.-+. ++ ..|.-+ +.-|+-... -|-|.+.|++++ ...|.++
T Consensus 107 spRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~-------~~G~~i~pl~~~-----------p~~t~l~ 168 (204)
T cd08904 107 SPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNH-------PCGYVCSPLPEN-----------PAYSKLV 168 (204)
T ss_pred cCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeee-------ccEEEEEECCCC-----------CCceEEE
Confidence 222111111100 00 000000 111222221 356999998642 3479999
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 022784 247 YSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREA 280 (292)
Q Consensus 247 y~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~r 280 (292)
+-+..+|++|||.++++..+...+-.-...+++.
T Consensus 169 ~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 169 MFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred EEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999999999988888887777777654
No 53
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=2.2e-05 Score=65.18 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=78.7
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhcccc-C---CceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVP-N---LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP-~---v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
|..+..|+||+++||+++||-+.+.+|++ . +..+.+-.+.|+..+....+..+ ..+....+ +.+.+
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g----~~~~~~g~--v~e~~---- 71 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDG----TDYPNRIV--FLEIE---- 71 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCC----CEecceEE--EEEEc----
Confidence 56778999999999999999999999974 2 22333333455543332222111 12222221 22222
Q ss_pred CCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHH---HHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVR---LVEGRLCNEIKTN 273 (292)
Q Consensus 197 p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~---Lv~~~l~~~i~~~ 273 (292)
++++|.|....++- ...-.|.|++.+ ++|+|++...+. -+.. .+...+..+...+
T Consensus 72 ---p~~~l~~t~~~~~~-~~~v~~~~~~~~--------------~gT~ltl~~~~~----~~~~~~~~~~~~~~~Gw~~~ 129 (139)
T cd08894 72 ---PPERIVYDHGSGPP-RFRLTVTFEEQG--------------GKTRLTWRQVFP----TAAERCEKIKFGAVEGNEQT 129 (139)
T ss_pred ---CCCEEEEEeccCCC-cEEEEEEEEECC--------------CCEEEEEEEEcC----CHHHHHHHHHhCHHHHHHHH
Confidence 36889998754421 234567777754 479998886431 1222 2345667788888
Q ss_pred HHHHHHHHHH
Q 022784 274 LSCIREAAKK 283 (292)
Q Consensus 274 L~alr~rAE~ 283 (292)
|..|++.+++
T Consensus 130 l~~L~~~l~~ 139 (139)
T cd08894 130 LDRLAAYLAR 139 (139)
T ss_pred HHHHHHHHhC
Confidence 8888887664
No 54
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.41 E-value=2e-05 Score=71.14 Aligned_cols=158 Identities=10% Similarity=0.117 Sum_probs=106.1
Q ss_pred cCCCeEEEEEEe-CCCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEE--EEEeecceeeeEE
Q 022784 103 HGDGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL--YQIGQQNLAFGIK 179 (292)
Q Consensus 103 ~~~~v~V~v~~~-~~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv--~qvg~~~l~~g~~ 179 (292)
.++|+.|+.++. +.+..-.+.+..|+..+++||+.|.+-....+|-|.+++++|+++=+....+ +...... .++
T Consensus 30 ~~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~--~~i- 106 (202)
T cd08902 30 KSKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQL--LNI- 106 (202)
T ss_pred eCCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCC--cCc-
Confidence 348999999977 5567788999999999999999999999999999999999999984433333 2211111 011
Q ss_pred EeeeeEEEeeeecccccCCCCcceEEE-----------EEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEE
Q 022784 180 FNAKGVLDCYEKDLEIFPSGKKRDIEF-----------KMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYS 248 (292)
Q Consensus 180 f~ar~vld~~E~~~~~~p~g~~r~I~f-----------~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~ 248 (292)
...|-.+++.-.. ...+ ..+.. ..+.|- .. =+-|-+.|.+++ ...|.+++-
T Consensus 107 ISpRDFVdv~~~~--~~~d---~~~s~gvs~~~~~~ppg~VRge-n~-p~g~i~~Pl~~~-----------p~k~~~t~~ 168 (202)
T cd08902 107 ISPREFVDFSYTT--QYED---GLLSCGVSIEYEEARPNFVRGF-NH-PCGWFCVPLKDN-----------PSHSLLTGY 168 (202)
T ss_pred cCccceEEEEEEE--EeCC---CeEEEEeeecCCCCCCCeEeec-cc-ccEEEEEECCCC-----------CCceEEEEE
Confidence 1111111111000 0000 00111 223331 11 256999998753 357999999
Q ss_pred EEEecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 249 VDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAA 281 (292)
Q Consensus 249 v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rA 281 (292)
+..++++|||..+++..+-..+-.-...||++.
T Consensus 169 lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999988888888864
No 55
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=1.5e-05 Score=65.38 Aligned_cols=132 Identities=19% Similarity=0.123 Sum_probs=75.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCC
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSG 199 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g 199 (292)
+|+.++.|+||+++||++++|.++|++|++... .......+....+...+... ..+. ..+.+..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~----~~~~----~~i~~~~------- 65 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH----GVFP----VTVVEVD------- 65 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc----cceE----EEEEEeC-------
Confidence 588999999999999999999999999999753 11111111111111111100 0111 1222221
Q ss_pred CcceEEEEEEeCC---------cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHH--HHHHHHHH
Q 022784 200 KKRDIEFKMIEGD---------FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVR--LVEGRLCN 268 (292)
Q Consensus 200 ~~r~I~f~~veGd---------Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~--Lv~~~l~~ 268 (292)
++++|.|....+. -......|+|++.+ ++|+|++...--+... ... ........
T Consensus 66 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~gT~vt~~~~~~~~~~-~~~~~~~~~~~~~ 130 (145)
T cd08898 66 PPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIA--------------GGTLLTVTESGFDALP-AERRAEAYRMNEG 130 (145)
T ss_pred CCcEEEEEecCCCcccccccCCCCceEEEEEEEecC--------------CcEEEEEEEcCCCCCC-hHHHHHHHHhhhh
Confidence 3578888865332 11235678887764 4699998865211110 011 12345777
Q ss_pred HHHHHHHHHHHHHH
Q 022784 269 EIKTNLSCIREAAK 282 (292)
Q Consensus 269 ~i~~~L~alr~rAE 282 (292)
+-..+|..|++.+|
T Consensus 131 gw~~~l~~L~~~le 144 (145)
T cd08898 131 GWDEQLENLVAYVE 144 (145)
T ss_pred hHHHHHHHHHHHhc
Confidence 88888888888776
No 56
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.29 E-value=3.8e-05 Score=63.30 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=76.7
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccC-----CceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~-----v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
|..++.|+||+++||+++||-+.+.+|++. +..++.--+.|+..+....+..+- .+..+... ++++.
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~~g~-~~ei~------ 73 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGS-MGFDFEGT-YTEVE------ 73 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCC-cccccceE-EEEEC------
Confidence 677899999999999999999999999654 233333334566544422111110 01112221 12211
Q ss_pred cCCCCcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHH
Q 022784 196 FPSGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLS 275 (292)
Q Consensus 196 ~p~g~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~ 275 (292)
++++|.|+..+| ....|.|++.+ ++|+|+.... + .+.. ....+..+-..+|.
T Consensus 74 ----p~~~l~~~~~~~----~~v~~~l~~~~--------------~gT~l~l~~~--~---~~~~-~~~~~~~GW~~~l~ 125 (133)
T cd08897 74 ----PHKLIEYTMEDG----REVEVEFTEEG--------------DGTKVVETFD--A---ENEN-PVEMQRQGWQAILD 125 (133)
T ss_pred ----CCCEEEEEcCCC----CEEEEEEEECC--------------CCEEEEEEEC--C---CCCC-cHHHHHHHHHHHHH
Confidence 368999987543 25688888854 4799886532 2 1221 23456677788888
Q ss_pred HHHHHHH
Q 022784 276 CIREAAK 282 (292)
Q Consensus 276 alr~rAE 282 (292)
.|++.+|
T Consensus 126 ~L~~~le 132 (133)
T cd08897 126 NFKKYVE 132 (133)
T ss_pred HHHHHhh
Confidence 8888775
No 57
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.20 E-value=0.0002 Score=59.94 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=77.7
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccC----CceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN----LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~----v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+..++.|+||+++||+++||-+.+.+|++- +..+.+--+.|+..+....+..+ ..+.....+ .+.+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g----~~~~~~g~v--~~i~---- 71 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDG----EEFPNPGCF--LEVV---- 71 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCC----CEecceEEE--EEEe----
Confidence 566789999999999999999999999862 34455555667665443322221 122212211 2221
Q ss_pred CCCCcceEEEEEEe--C-Cc---ceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHH---HHHHHHH
Q 022784 197 PSGKKRDIEFKMIE--G-DF---QLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVR---LVEGRLC 267 (292)
Q Consensus 197 p~g~~r~I~f~~ve--G-dF---k~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~---Lv~~~l~ 267 (292)
++++|.|...- + .. ....-.|.|++.+ ++|+|+..... +-+.. .....+.
T Consensus 72 ---p~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~--------------~gT~Ltl~~~~----~~~~~~~~~~~~~~~ 130 (146)
T cd08896 72 ---PGERLVFTDALTPGWRPAEKPFMTAIITFEDEG--------------GGTRYTARARH----WTEADRKQHEEMGFH 130 (146)
T ss_pred ---CCCEEEEEEeecCCcCCCCCCcEEEEEEEEecC--------------CcEEEEEEEEe----CCHHHHHHHHHcCHH
Confidence 36788887431 1 11 1134578898864 47999875332 22221 2222346
Q ss_pred HHHHHHHHHHHHHHH
Q 022784 268 NEIKTNLSCIREAAK 282 (292)
Q Consensus 268 ~~i~~~L~alr~rAE 282 (292)
.+-...|..|++.++
T Consensus 131 ~GW~~~l~~L~~~l~ 145 (146)
T cd08896 131 DGWGTAADQLAALAE 145 (146)
T ss_pred HHHHHHHHHHHHHHh
Confidence 778888888887765
No 58
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.12 E-value=0.00037 Score=58.25 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=76.6
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCc-eE---EEEEecCCeEEEEEEeec---ceeeeEEEeeeeEEEeeeecc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLA-VS---QVVEKNDNFVRLYQIGQQ---NLAFGIKFNAKGVLDCYEKDL 193 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~-~s---rVler~g~~~rv~qvg~~---~l~~g~~f~ar~vld~~E~~~ 193 (292)
|..+..|+||++.||++++|.+++.+|++.-. .+ .+-.+.|+..++...... +..-+..+.... .+.+.+
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g--~v~~v~- 78 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGG--RFLELV- 78 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEE--EEEEEc-
Confidence 56778899999999999999999999987421 22 222234444443221110 000001111111 122222
Q ss_pred cccCCCCcceEEEEEE--eCCcc-eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHH
Q 022784 194 EIFPSGKKRDIEFKMI--EGDFQ-LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEI 270 (292)
Q Consensus 194 ~~~p~g~~r~I~f~~v--eGdFk-~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i 270 (292)
++++|.|+.. ++... ...-.|.|++.+ ++|+|++....- |..........+-
T Consensus 79 ------p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~T~lt~~~~~~-----~~~~~~~~~~~GW 133 (146)
T cd08895 79 ------PNERIVYTDVFDDPSLSGEMTMTWTLSPVS--------------GGTDVTIVQSGI-----PDGIPPEDCELGW 133 (146)
T ss_pred ------CCCEEEEEEEecCCCCCceEEEEEEEEecC--------------CCEEEEEEEeCC-----CchhhhhHHHHHH
Confidence 3578888854 22222 235667777654 479998887632 2223345777788
Q ss_pred HHHHHHHHHHHH
Q 022784 271 KTNLSCIREAAK 282 (292)
Q Consensus 271 ~~~L~alr~rAE 282 (292)
..+|..|++.++
T Consensus 134 ~~~l~~L~~~le 145 (146)
T cd08895 134 QESLANLAALVE 145 (146)
T ss_pred HHHHHHHHHHhc
Confidence 888888887665
No 59
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.08 E-value=0.0003 Score=56.06 Aligned_cols=120 Identities=19% Similarity=0.193 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCCcceEEEE
Q 022784 128 DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFK 207 (292)
Q Consensus 128 ~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~~r~I~f~ 207 (292)
+||+++||++++|-+.+.+|.+ +....+-.+.|+..+. .+..+ -.+...+. +.+.. ++++|.|+
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~--~~~~g----~~~~~~~~--v~~~~-------p~~~i~~~ 64 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF--MDPDG----GEFGFDGT--VLEVE-------PPERIVFT 64 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE--EETTS----EEEEEEEE--EEEEE-------TTTEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE--EecCC----CCceeeEE--EEEEe-------CCEEEEEE
Confidence 6999999999999999999911 2333333355555444 22221 12222222 12221 35788888
Q ss_pred EEeCC---cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHH-HHHHHHHHHHHHHHHHH
Q 022784 208 MIEGD---FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGR-LCNEIKTNLSCIREAAK 282 (292)
Q Consensus 208 ~veGd---Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~-l~~~i~~~L~alr~rAE 282 (292)
...++ .....-.|.|++.+ ++|+|++.... ++..-.... +..+...+|..|++.+|
T Consensus 65 ~~~~~~~~~~~~~v~~~~~~~~--------------~~T~l~~~~~~-----~~~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 65 WRMPDDPDGPESRVTFEFEEEG--------------GGTRLTLTHSG-----FPDDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEETSSSCEEEEEEEEEEEET--------------TEEEEEEEEEE-----EHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCCCCceEEEEEEEEcC--------------CcEEEEEEEEc-----CCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65332 44667788888843 47998888743 222222222 88888888888888765
No 60
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.97 E-value=0.00022 Score=59.11 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=76.4
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
++.++.|+||+++||+.+||-+.+.+|.+.-...+ -+.|+..+...... +. .....+.+.+ +
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~--~~~Gg~~~~~~~~~-----~~----~~~g~~~~~~-------p 63 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR--LEEGKTVTWDWEMY-----GA----SVPVNVLEIE-------P 63 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc--ccCCCEEEEEEEcc-----CC----ceEEEEEEEc-------C
Confidence 67899999999999999999999999755433322 23444432211110 00 1111223322 3
Q ss_pred cceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHH-HHHHHHHHHHHHHHHHH
Q 022784 201 KRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLV-EGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 201 ~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv-~~~l~~~i~~~L~alr~ 279 (292)
+++|.|+...++ -...-.|.|++.++ ++|+|++....-|. .-+..+. ......+-..+|..|++
T Consensus 64 ~~~l~~~w~~~~-~~s~v~~~l~~~~~-------------ggT~ltl~~~~~~~-~~~~~~~~~~~~~~GW~~~L~~L~~ 128 (136)
T cd08901 64 NKRIVIEWGDPG-EPTTVEWTFEELDD-------------GRTFVTITESGFPG-TDDEGLKQALGSTEGWTLVLAGLKA 128 (136)
T ss_pred CCEEEEEecCCC-CCEEEEEEEEECCC-------------CcEEEEEEECCCCC-CcHHHHHHHhcCCCCHHHHHHHHHH
Confidence 688988876432 12346788888652 47999888553222 1221221 11234677788888888
Q ss_pred HHHH
Q 022784 280 AAKK 283 (292)
Q Consensus 280 rAE~ 283 (292)
.+|.
T Consensus 129 ~le~ 132 (136)
T cd08901 129 YLEH 132 (136)
T ss_pred HHhc
Confidence 8875
No 61
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.95 E-value=0.00089 Score=55.67 Aligned_cols=133 Identities=7% Similarity=-0.111 Sum_probs=75.1
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccC-----CceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~-----v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
+.-+..++||+++||++++|-+.+.+|+.. +..+++--+.|+..+.......+ ..+....++ .+.+
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g----~~~~~~g~~--~~~~--- 72 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGG----PEITVEARY--HDIV--- 72 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCC----CEEeeeEEE--EEec---
Confidence 455677999999999999999999999853 34444444556554432221111 112222211 2221
Q ss_pred cCCCCcceEEEEEE--eCCcc--eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHH
Q 022784 196 FPSGKKRDIEFKMI--EGDFQ--LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIK 271 (292)
Q Consensus 196 ~p~g~~r~I~f~~v--eGdFk--~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~ 271 (292)
++++|.|+.. .++-. ...-.|.|++.+ ++|+|++....-+.-. ... ...+..+-.
T Consensus 73 ----p~~~l~~t~~~~~~~~~~~~s~v~~~l~~~~--------------~gT~l~~~~~~~~~~~-~~~--~~~~~~GW~ 131 (143)
T cd08900 73 ----PDERIVYTYTMHIGGTLLSASLATVEFAPEG--------------GGTRLTLTEQGAFLDG-DDD--PAGREQGTA 131 (143)
T ss_pred ----CCceEEEEEeeccCCccccceEEEEEEEECC--------------CCEEEEEEEEEecccc-cch--hhhHHHHHH
Confidence 3578877753 22211 223456666643 4799988765421100 111 245567777
Q ss_pred HHHHHHHHHHHH
Q 022784 272 TNLSCIREAAKK 283 (292)
Q Consensus 272 ~~L~alr~rAE~ 283 (292)
.+|..|++.+++
T Consensus 132 ~~l~~L~~~l~~ 143 (143)
T cd08900 132 ALLDNLAAELER 143 (143)
T ss_pred HHHHHHHHHHhC
Confidence 788888777653
No 62
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.90 E-value=0.0019 Score=55.61 Aligned_cols=113 Identities=17% Similarity=0.390 Sum_probs=72.7
Q ss_pred eEEEEEEEEcCCHHHHHHHHH-ChhhhhccccC-CceEEEEEecCC---eEEEEEEeecceeeeEEEeeeeEEEeeeecc
Q 022784 119 RRIRSKIEIDASLDTVWHILT-DYEKLADFVPN-LAVSQVVEKNDN---FVRLYQIGQQNLAFGIKFNAKGVLDCYEKDL 193 (292)
Q Consensus 119 r~I~asi~I~Appe~Vw~vLT-DyE~yPeFiP~-v~~srVler~g~---~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~ 193 (292)
..+..++.+++|++++|+++. .-.-+|+.+|. ++++++++.+|+ .++....+..+ ...+ .+-.++....
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~---~~~~-~Kekve~~D~-- 77 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGG---PFKY-VKEKVEAIDE-- 77 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTS---SEEE-EEEEEEEEET--
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCC---Ccce-eEEEEEeecC--
Confidence 467889999999999999999 55667889988 456688887554 34433222111 0111 1212222221
Q ss_pred cccCCCCcceEEEEEEeCC----cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCC
Q 022784 194 EIFPSGKKRDIEFKMIEGD----FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLW 256 (292)
Q Consensus 194 ~~~p~g~~r~I~f~~veGd----Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~ 256 (292)
..+.+.|++++|+ ++.|...-.+.+.++ ++|.+.+.+++++...
T Consensus 78 ------~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~-------------g~~v~k~t~~Ye~~~~ 125 (151)
T PF00407_consen 78 ------ENKTITYTVIEGDVLGDYKSFKSTIQKIPKGD-------------GGCVVKWTIEYEKKGE 125 (151)
T ss_dssp ------TTTEEEEEEEEETTGTTTEEEEEEEEEEEETT-------------SCEEEEEEEEEEESST
T ss_pred ------CCcEEEEEEEeccccccEEEEEEEEEecCCCC-------------CceEEEEEEEEEecCC
Confidence 3589999999997 345555555554443 4699999999999764
No 63
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.87 E-value=0.00058 Score=57.25 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=76.7
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccC--------CceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeec
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN--------LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKD 192 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~--------v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~ 192 (292)
|+.++.|+||+++||+.+|| .+.+|.+- ...+.+-.+.|+.... .+..+ ..+....++++.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g----~~~~~g~v~~v~--- 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDG----TECEWGTVLAWE--- 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCC----cEeceEEEEEEc---
Confidence 78899999999999999999 58888652 1344444456655432 11111 111111122211
Q ss_pred ccccCCCCcceEEEEEE-eCCcc-----eeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCc--hHHHHHH
Q 022784 193 LEIFPSGKKRDIEFKMI-EGDFQ-----LFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL--PVRLVEG 264 (292)
Q Consensus 193 ~~~~p~g~~r~I~f~~v-eGdFk-----~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~l--P~~Lv~~ 264 (292)
++++|.|.-. ..++. ...-.|.|++.++ ++|+|++....-....- .......
T Consensus 71 -------p~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~-------------~gT~ltl~~~~~~~~~~~~~~~~~~~ 130 (149)
T cd08891 71 -------PPSRLVFTWQINADWRPDPDKASEVEVRFEAVGA-------------EGTRVELEHRGFERHGDGWEAAAMRM 130 (149)
T ss_pred -------CCCEEEEEeccCCCcCcCCCCceEEEEEEEECCC-------------CCeEEEEEEecccccCcchhhHHHHh
Confidence 3578877754 21121 2456788888641 36998877664322210 2233344
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022784 265 RLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 265 ~l~~~i~~~L~alr~rAE~ 283 (292)
.+..+-..+|..|++.+|+
T Consensus 131 ~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 131 GYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred cccCcHHHHHHHHHHHhcC
Confidence 5667788888888887764
No 64
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.85 E-value=0.0027 Score=52.99 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=75.5
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCC----ceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeeccccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNL----AVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v----~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~ 196 (292)
+..+..++||+++||+.+||-+.+.+|+..- ..+++--+.|+..+....+..+ ..+..... +.+.+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g----~~~~~~g~--~~ei~---- 71 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDG----EEMGFHGV--YHEVT---- 71 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCC----CEecceEE--EEEEc----
Confidence 5667889999999999999999999998643 2334434556654442221111 11111111 12221
Q ss_pred CCCCcceEEEEEEeC--CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHH
Q 022784 197 PSGKKRDIEFKMIEG--DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNL 274 (292)
Q Consensus 197 p~g~~r~I~f~~veG--dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L 274 (292)
++++|.|...-. +-....-.|.|++.+ ++|+|+.+..+ +..-.-.......+..+-...|
T Consensus 72 ---p~~~l~~t~~~~~~~~~~s~v~~~l~~~~--------------~gT~l~l~~~~-~~~~~~~~~~~~~~~~Gw~~~l 133 (142)
T cd07826 72 ---PPERIVQTEEFEGLPDGVALETVTFTELG--------------GRTRLTATSRY-PSKEARDGVLASGMEEGMEESY 133 (142)
T ss_pred ---CCCEEEEEeEecCCCCCceEEEEEEEECC--------------CCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHH
Confidence 357888875422 122335577887754 47998876443 1110011234456667777777
Q ss_pred HHHHHHH
Q 022784 275 SCIREAA 281 (292)
Q Consensus 275 ~alr~rA 281 (292)
..|.+..
T Consensus 134 ~~L~~~l 140 (142)
T cd07826 134 DRLDELL 140 (142)
T ss_pred HHHHHHH
Confidence 7776654
No 65
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.65 E-value=0.0033 Score=57.01 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=94.2
Q ss_pred cCCCeEEEEEEeCCC--ceEEEEEEEEcC-CHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEE
Q 022784 103 HGDGVCIEIKKLGRN--SRRIRSKIEIDA-SLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIK 179 (292)
Q Consensus 103 ~~~~v~V~v~~~~~~--~r~I~asi~I~A-ppe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~ 179 (292)
..++++|..++.+++ .+.+++++.|++ |++.++++|.| -..|=+++.+++++++=+....+.|-...+.+ ..+
T Consensus 34 ~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~-p~p 109 (205)
T cd08907 34 GPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMA-PHP 109 (205)
T ss_pred CCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCC-CCC
Confidence 467999999998875 468999999986 55667889988 55688889999999873322233222221110 000
Q ss_pred EeeeeEEEeeeecccccCCCCcceEEEEEEeC---Cc------ceeEEEEEEEEccCCccccccccccCCCceEEEEEEE
Q 022784 180 FNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEG---DF------QLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVD 250 (292)
Q Consensus 180 f~ar~vld~~E~~~~~~p~g~~r~I~f~~veG---dF------k~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~ 250 (292)
-+.-++++..-. .+|.| .--|.=..|+- ++ -.+.-.+-++|.+. ++|+|+|-..
T Consensus 110 ~RDfv~lRsW~~---~l~~g-~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~-------------g~s~ltyi~r 172 (205)
T cd08907 110 RRDFVVLRMWRS---DLPRG-GCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM-------------GRSRLTHICR 172 (205)
T ss_pred CceEEEEEEEcc---CCCCC-CEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC-------------CCeEEEEEEE
Confidence 000011110000 01211 01111111110 01 12344577888764 4899999999
Q ss_pred EecCCCchHHHHHHHHHHHHHHHHHHHHH
Q 022784 251 VRPKLWLPVRLVEGRLCNEIKTNLSCIRE 279 (292)
Q Consensus 251 vePk~~lP~~Lv~~~l~~~i~~~L~alr~ 279 (292)
++|+|++|.+. ++....-+...|..||+
T Consensus 173 vD~rG~~P~Wy-nk~~g~~~a~~l~~ir~ 200 (205)
T cd08907 173 ADLRGRSPDWY-NKVFGHLCAMEVARIRD 200 (205)
T ss_pred eCCCCCCcHHH-HHhHHHHHHHHHHHHHh
Confidence 99999999999 78888888888888875
No 66
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.011 Score=50.44 Aligned_cols=138 Identities=17% Similarity=0.086 Sum_probs=77.9
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 116 RNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 116 ~~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
...+.++.+..|+||++.||+.+||-+.+++|+. -.-++.--+.++.-+....+..+- ...+... ++++.
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~--~~~~~~~-~~~v~------ 74 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGP--VHSFEGE-YLEVV------ 74 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCC--eeecceE-EEEEc------
Confidence 3467899999999999999999999999999997 221222223344333322211110 0112211 12211
Q ss_pred cCCCCcceEEEEEEeC----CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHH--HHHHHHHH
Q 022784 196 FPSGKKRDIEFKMIEG----DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRL--VEGRLCNE 269 (292)
Q Consensus 196 ~p~g~~r~I~f~~veG----dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~L--v~~~l~~~ 269 (292)
++++|.|.-... ++..-...|.|.+...| ++|++...... ..++..- ....+..+
T Consensus 75 ----p~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~G 135 (149)
T COG3832 75 ----PPERIVFTWDFDEDGEPFLKSLVTITLTPEDDG------------GTTTLVRTSGG---GFLEDEDQKLGMGMEEG 135 (149)
T ss_pred ----CCcEEEEEeccCCCCCcccCceEEEEEEEecCC------------CcEEEEEEeec---cccchhHHHhCcchhhh
Confidence 357777776432 23345788999987653 24443333221 1144432 23334777
Q ss_pred HHHHHHHHHHHHH
Q 022784 270 IKTNLSCIREAAK 282 (292)
Q Consensus 270 i~~~L~alr~rAE 282 (292)
-..++.++++.++
T Consensus 136 w~~~~~~l~~~l~ 148 (149)
T COG3832 136 WGQLLDNLKALLE 148 (149)
T ss_pred HHHHHHHHHHhhc
Confidence 7888888777654
No 67
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.24 E-value=0.023 Score=46.46 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=69.3
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCC
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~ 200 (292)
|..++.|+||+++||+.+||-+.+.+|+... +.+-.+.|+..+... | .+.. .++++. +
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~--~~~d~~~GG~~~~~~-g--------~~~g-~~~~i~----------p 59 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSP--AKVDAKVGGKFSLFG-G--------NITG-EFVELV----------P 59 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCC--ceecCCCCCEEEEeC-C--------ceEE-EEEEEc----------C
Confidence 5677899999999999999999999997532 233334554433211 1 0111 112222 2
Q ss_pred cceEEEEEE--eCC-cceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHHHHH-HHHH
Q 022784 201 KRDIEFKMI--EGD-FQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKT-NLSC 276 (292)
Q Consensus 201 ~r~I~f~~v--eGd-Fk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~-~L~a 276 (292)
+++|.|.-. +.+ -....-.|.|++.+ ++|+|++....-+.. .. ..+..+-.. .+..
T Consensus 60 ~~~l~~~w~~~~~~~~~~s~v~~~l~~~~--------------~gT~ltl~~~g~~~~-----~~-~~~~~GW~~~~~~~ 119 (126)
T cd08892 60 GKKIVQKWRFKSWPEGHYSTVTLTFTEKD--------------DETELKLTQTGVPAG-----EE-ERTREGWERYYFES 119 (126)
T ss_pred CCEEEEEEEcCCCCCCCcEEEEEEEEECC--------------CCEEEEEEEECCCCc-----hH-HHHHhhHHHHHHHH
Confidence 567766643 212 12345688888863 479998887754432 11 334555554 5566
Q ss_pred HHHHH
Q 022784 277 IREAA 281 (292)
Q Consensus 277 lr~rA 281 (292)
|++..
T Consensus 120 l~~~~ 124 (126)
T cd08892 120 IKQTF 124 (126)
T ss_pred HHHHh
Confidence 66543
No 68
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.06 E-value=0.019 Score=60.34 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=86.1
Q ss_pred CCCeEEEEEEeCCC------ceEEEEEEEEcCCHHHHHHHHHChh-hhhccccCCceEEEEEe-cCCeEEEEEEeeccee
Q 022784 104 GDGVCIEIKKLGRN------SRRIRSKIEIDASLDTVWHILTDYE-KLADFVPNLAVSQVVEK-NDNFVRLYQIGQQNLA 175 (292)
Q Consensus 104 ~~~v~V~v~~~~~~------~r~I~asi~I~Appe~Vw~vLTDyE-~yPeFiP~v~~srVler-~g~~~rv~qvg~~~l~ 175 (292)
.+|+.|.-+-.+.. .+.+++.-+|+|++++||++|.+.. .-.+|-..+...+|+++ +++...+|+....+.+
T Consensus 206 ~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~ 285 (719)
T PLN00188 206 QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWF 285 (719)
T ss_pred eccceeehhhhccccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccc
Confidence 45666665543221 4679999999999999999999887 77789999999999998 4444445555433221
Q ss_pred eeEEEeeeeEEEeeeecccccCCCCcceEEEEEEeC--------Cc--ceeEEEEEEEEccCCccccccccccCCCceEE
Q 022784 176 FGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEG--------DF--QLFEGKWSIEQFNGGKFEDSESLLSQKFQTTL 245 (292)
Q Consensus 176 ~g~~f~ar~vld~~E~~~~~~p~g~~r~I~f~~veG--------dF--k~feG~Wslep~~~g~~~~~~~~~~~~~~TrV 245 (292)
.++ ...|-.+++.-+. ...+| .--|.++.++- -. ...-|-|.+.|+... +....|.|
T Consensus 286 ~~~-ispRDFV~~Rywr--r~eDG-sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~---------~g~~r~lv 352 (719)
T PLN00188 286 PMF-VWPRDLCYVRYWR--RNDDG-SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR---------NGRPRTQV 352 (719)
T ss_pred cCc-cCcceeEEEEEEE--EcCCC-cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC---------CCCCceEE
Confidence 111 1112111111110 00111 01233332211 01 111378999997531 11358999
Q ss_pred EEEEEEecCCCchHH
Q 022784 246 SYSVDVRPKLWLPVR 260 (292)
Q Consensus 246 ty~v~vePk~~lP~~ 260 (292)
++.+++++++|.|..
T Consensus 353 ~~~lqtDlkGW~~~y 367 (719)
T PLN00188 353 QHLMQIDLKGWGVGY 367 (719)
T ss_pred EEEEEEccCcccccc
Confidence 999999999999974
No 69
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.83 E-value=0.051 Score=46.75 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=86.8
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCC----ceEEEEEecCCeEEE--EE-Eeeccee-eeEEEeeeeEEEeeeec
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNL----AVSQVVEKNDNFVRL--YQ-IGQQNLA-FGIKFNAKGVLDCYEKD 192 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v----~~srVler~g~~~rv--~q-vg~~~l~-~g~~f~ar~vld~~E~~ 192 (292)
+..++.+++|+++||++++|=+-+.+-+-.+ ..+.-+..+++..++ .| +....++ +--+|... -+.+.+..
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~-~l~v~~~e 79 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGG-DLRVTRTE 79 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCC-CeEEEEEE
Confidence 3567889999999999999986665544333 333334455555443 23 1111110 00011111 01111111
Q ss_pred ccccC--CCCcceEEEEE-EeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHHHHHHHHHHH
Q 022784 193 LEIFP--SGKKRDIEFKM-IEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVRLVEGRLCNE 269 (292)
Q Consensus 193 ~~~~p--~g~~r~I~f~~-veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~Lv~~~l~~~ 269 (292)
.|.| +| .....+.. +.|.--.+.|.-.|.+.+ .+|++.++.+++-+.|+.+..+++.+...
T Consensus 80 -~w~~~~~g-~~~g~~~~~~~G~P~~~~G~~~L~~~~--------------~gt~~~~~g~v~v~VPlvGgkiE~~v~~~ 143 (159)
T PF10698_consen 80 -TWTPLDDG-RRTGTFTVSIPGAPVSISGTMRLRPDG--------------GGTRLTVEGEVKVKVPLVGGKIEKAVAEN 143 (159)
T ss_pred -EEecCCCC-eEEEEEEEEecCceEEEEEEEEEecCC--------------CCEEEEEEEEEEEEEccccHHHHHHHHHH
Confidence 1222 22 23344443 345545669999998843 47999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHH
Q 022784 270 IKTNLSCIREAAKK 283 (292)
Q Consensus 270 i~~~L~alr~rAE~ 283 (292)
+...+..-.+.+.+
T Consensus 144 ~~~~~~~e~~~~~~ 157 (159)
T PF10698_consen 144 LRKLLEAEQEFTAE 157 (159)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888776665554
No 70
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=96.61 E-value=0.43 Score=43.83 Aligned_cols=162 Identities=11% Similarity=0.126 Sum_probs=104.6
Q ss_pred ccccCCCeEEEEEEeC-CCceEEEEEEEE-cCCHHHHHHHHHChhhhhccccCCceEEEEEecC--CeEEEEEEeeccee
Q 022784 100 QSLHGDGVCIEIKKLG-RNSRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKND--NFVRLYQIGQQNLA 175 (292)
Q Consensus 100 ~~~~~~~v~V~v~~~~-~~~r~I~asi~I-~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g--~~~rv~qvg~~~l~ 175 (292)
...++.++.|..++.+ +|...+++..+. +++|+.|+++..|-|==++|=-.+...++++.+. |...++.+-...++
T Consensus 33 ~~~~k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p 112 (219)
T KOG2761|consen 33 LVMDKSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFP 112 (219)
T ss_pred hhcccCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcc
Confidence 4558889999885554 466677777666 6999999999999999999999999999999864 33333433222110
Q ss_pred eeEEEeee-eEE-----E--------ee-eecccccCCCCcceEEEEEEeCCcceeEEEEEEE-EccCCccccccccccC
Q 022784 176 FGIKFNAK-GVL-----D--------CY-EKDLEIFPSGKKRDIEFKMIEGDFQLFEGKWSIE-QFNGGKFEDSESLLSQ 239 (292)
Q Consensus 176 ~g~~f~ar-~vl-----d--------~~-E~~~~~~p~g~~r~I~f~~veGdFk~feG~Wsle-p~~~g~~~~~~~~~~~ 239 (292)
+..| .++ + +. .......|. ..+.++.. .+...|.+. +.- .+.
T Consensus 113 ----~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~-~~~~vRv~-------~~~s~~~I~~~~~----------~~~ 170 (219)
T KOG2761|consen 113 ----MSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPP-LKKKVRVT-------VYRSGWLIRVESR----------SGD 170 (219)
T ss_pred ----cCCccEEEEEEEEecCCceEEEEEecccCCCcCC-cCCcEEEE-------EEEEEEEEEcccc----------cCC
Confidence 1011 010 0 00 000111121 11223333 346678887 221 122
Q ss_pred CCceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 240 KFQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKK 283 (292)
Q Consensus 240 ~~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~ 283 (292)
+.+|...|.....|++.+|..+++...+++++..++.+-....+
T Consensus 171 ~~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~ 214 (219)
T KOG2761|consen 171 EQGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLA 214 (219)
T ss_pred CCccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 45788889999999999999999999999998888776554443
No 71
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.53 E-value=0.049 Score=45.30 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=62.0
Q ss_pred EcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCCcceEEE
Q 022784 127 IDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEF 206 (292)
Q Consensus 127 I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~~r~I~f 206 (292)
++||+++||+.+||-+.+.+|.=. ..+.+--+.|+..+... + .+.. .++++. ++++|.|
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~--------~-~~~G-~~~ev~----------pp~rlv~ 59 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN--------G-SVEG-EFTELE----------KPKKIVQ 59 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec--------C-ceEE-EEEEEc----------CCCEEEE
Confidence 479999999999999999998411 22333234454433211 0 1111 112211 2567776
Q ss_pred EEEeC---CcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchHH-HHHHHHHHHHHH-HHHHHHHH
Q 022784 207 KMIEG---DFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPVR-LVEGRLCNEIKT-NLSCIREA 280 (292)
Q Consensus 207 ~~veG---dFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~~-Lv~~~l~~~i~~-~L~alr~r 280 (292)
.-.-. +-....-.|.|++.++ ++|+|+....--|...-... .....+..+... .|..|++.
T Consensus 60 tw~~~~~~~~~~s~vt~~~~~~~~-------------g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~ 125 (132)
T PTZ00220 60 KWRFRDWEEDVYSKVTIEFRAVEE-------------DHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKI 125 (132)
T ss_pred EEecCCCCCCCceEEEEEEEeCCC-------------CcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHH
Confidence 65322 1112356788887542 47999888773333211111 122234455554 35555543
No 72
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=1.7 Score=37.40 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=74.0
Q ss_pred EEEEEEEcCCHHHHHHHHHChhhhhccccCCceEEEEEecCCeE----EEE-EEeecceeeeEEEeeeeEEEeeeecccc
Q 022784 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV----RLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (292)
Q Consensus 121 I~asi~I~Appe~Vw~vLTDyE~yPeFiP~v~~srVler~g~~~----rv~-qvg~~~l~~g~~f~ar~vld~~E~~~~~ 195 (292)
+.-...|+||+|.||+--+-.+++...-|--+ |+-..+.++ ++. ..+..++.-|+.-.+ ..+|.. .
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~A----rhte~~--~ 74 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVA----RHTESG--F 74 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEE----Eeeecc--c
Confidence 44556799999999999999999988888766 333333222 110 011111110112222 223311 0
Q ss_pred cCCCCcceEEEEEEeCCccee--EEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCC-chHHHHHHHHHHHHHH
Q 022784 196 FPSGKKRDIEFKMIEGDFQLF--EGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLW-LPVRLVEGRLCNEIKT 272 (292)
Q Consensus 196 ~p~g~~r~I~f~~veGdFk~f--eG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~-lP~~Lv~~~l~~~i~~ 272 (292)
. +..+..=.++.|||..+ .-..+|.+. +++|.+.=+|.+++++. +-.++..+...-.+..
T Consensus 75 -d--~~~~FtDv~i~gPfp~~~WrHtH~F~~e--------------gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~ 137 (153)
T COG4276 75 -D--NGSRFTDVCITGPFPALNWRHTHNFVDE--------------GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDL 137 (153)
T ss_pred -C--CcceeeeeeecCCccceeeEEEeeeecC--------------CCcEEEEeeEEeeccCcceechhhhhhHHHHHHH
Confidence 0 24567777899999985 344444443 36899988888888765 4455555555555555
Q ss_pred HHH
Q 022784 273 NLS 275 (292)
Q Consensus 273 ~L~ 275 (292)
|+.
T Consensus 138 mFr 140 (153)
T COG4276 138 MFR 140 (153)
T ss_pred HHH
Confidence 543
No 73
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=94.59 E-value=0.36 Score=43.72 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=39.6
Q ss_pred ceeEE-EEEEEEccCCccccccccccCCCceEEEEEE--EEecCCCchHHHHHHHHHHHHHHHHHHHH
Q 022784 214 QLFEG-KWSIEQFNGGKFEDSESLLSQKFQTTLSYSV--DVRPKLWLPVRLVEGRLCNEIKTNLSCIR 278 (292)
Q Consensus 214 k~feG-~Wslep~~~g~~~~~~~~~~~~~~TrVty~v--~vePk~~lP~~Lv~~~l~~~i~~~L~alr 278 (292)
....| .|++.|.+. ++.+.|+|.+ +.+|++.||.++.+..+-..|..-...|-
T Consensus 148 ~y~SgE~~~~~p~~~------------~~~~~vew~maT~sDpGG~IP~wl~n~~~p~aI~~Dv~~fl 203 (208)
T cd08864 148 RYASVEKISYLPDAD------------GKSNKVEWIMATRSDAGGNIPRWLTKLTIPKAIAKDVPLFL 203 (208)
T ss_pred EEEEEEEEEEcCccC------------CCcCCEEEEEEEeeCCCCcCcHHHHhccCchHHHHhHHHHH
Confidence 35578 899988742 1356788888 99999999999998877766665554443
No 74
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=93.83 E-value=2.9 Score=36.09 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=58.6
Q ss_pred CHHHHHHHHHChhhhhc-cccCCceEEEEEecCCeEEEEEEeecceeeeEEEeeeeEEEeeeecccccCCCCcceEEEEE
Q 022784 130 SLDTVWHILTDYEKLAD-FVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFKM 208 (292)
Q Consensus 130 ppe~Vw~vLTDyE~yPe-FiP~v~~srVler~g~~~rv~qvg~~~l~~g~~f~ar~vld~~E~~~~~~p~g~~r~I~f~~ 208 (292)
+.++||+=|.---+-|+ |+|.+.+|+|+++.++.+. +.+-+. +..+..++++. ++.+|.|..
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~-R~v~fg----~~~v~E~v~~~------------~~~~V~f~~ 81 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLT-REVTFG----GATVRERVTLY------------PPERVDFAQ 81 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEE-EEEEET----TEEEEEEEEEE------------TTTEEEESS
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEE-EEEEEC----CcEEEEEEEEe------------CCcEEEEEc
Confidence 56899998877666665 9999999999998866532 222111 12233333221 246788843
Q ss_pred EeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchH--------HHHHHHHHHHHHHHHHHHHHH
Q 022784 209 IEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPV--------RLVEGRLCNEIKTNLSCIREA 280 (292)
Q Consensus 209 veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~--------~Lv~~~l~~~i~~~L~alr~r 280 (292)
..|. .+.. .++..+ ++.-.|+|..+......-+. ......-+......++.||+.
T Consensus 82 ~~Gs--~lt~--~I~e~~-------------~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~ 144 (149)
T PF08982_consen 82 HDGS--SLTN--IISEPE-------------PGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIREL 144 (149)
T ss_dssp SBEE--EEEE--EEEEEE-------------TTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--EEEE--EEecCC-------------CCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 1111 122211 23455555555543332332 234566666777778888887
Q ss_pred HHH
Q 022784 281 AKK 283 (292)
Q Consensus 281 AE~ 283 (292)
++.
T Consensus 145 ~~~ 147 (149)
T PF08982_consen 145 AKE 147 (149)
T ss_dssp H--
T ss_pred hhc
Confidence 753
No 75
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=92.20 E-value=6.9 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHCh-hhhhccccCCceEEEEEecCCe
Q 022784 129 ASLDTVWHILTDY-EKLADFVPNLAVSQVVEKNDNF 163 (292)
Q Consensus 129 Appe~Vw~vLTDy-E~yPeFiP~v~~srVler~g~~ 163 (292)
-..+|+|.=|.=- ++=-.|+|++.+|+|+++.++.
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~ 52 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTV 52 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCE
Confidence 3568999866544 4444599999999999988763
No 76
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=66.03 E-value=13 Score=38.25 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=40.2
Q ss_pred CceEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022784 241 FQTTLSYSVDVRPKLWLPVRLVEGRLCNEIKTNLSCIREAAKKL 284 (292)
Q Consensus 241 ~~TrVty~v~vePk~~lP~~Lv~~~l~~~i~~~L~alr~rAE~~ 284 (292)
-.|.++|...+-|++|.|...+....+++.+.-|+.|....++-
T Consensus 560 ~~ckityvs~vnpggwapasalravykreypkflkrft~yv~~~ 603 (611)
T KOG1739|consen 560 ILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRFTSYVQEK 603 (611)
T ss_pred eeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999998887653
No 77
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=55.12 E-value=1.8e+02 Score=27.02 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=33.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHChhhhhccccC-CceEEEEEe
Q 022784 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPN-LAVSQVVEK 159 (292)
Q Consensus 120 ~I~asi~I~Appe~Vw~vLTDyE~yPeFiP~-v~~srVler 159 (292)
.-|++..|...+..+-++|.|..+|.+++|. |.++++++.
T Consensus 61 ASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~v 101 (229)
T cd08875 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQV 101 (229)
T ss_pred EEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEE
Confidence 3567778899999999999999999997776 677777654
No 78
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=41.85 E-value=16 Score=28.11 Aligned_cols=14 Identities=36% Similarity=0.964 Sum_probs=12.3
Q ss_pred CcceeEEEEEEEEc
Q 022784 212 DFQLFEGKWSIEQF 225 (292)
Q Consensus 212 dFk~feG~Wslep~ 225 (292)
-++.|+|.|.++|+
T Consensus 29 fMK~FEGswKVepl 42 (74)
T PF02713_consen 29 FMKVFEGSWKVEPL 42 (74)
T ss_pred eeeeecceeEEEee
Confidence 36899999999996
No 79
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=1.1e+02 Score=29.64 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=28.7
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHChhhhhcccc
Q 022784 118 SRRIRSKIEIDASLDTVWHILTDYEKLADFVP 149 (292)
Q Consensus 118 ~r~I~asi~I~Appe~Vw~vLTDyE~yPeFiP 149 (292)
...|.-+-.++++++++|++++|-++...|.-
T Consensus 172 t~di~l~~tfn~~~~eLy~~fld~~rv~~wt~ 203 (301)
T KOG2936|consen 172 TADISLSATFNCRVDELYEIFLDPERVKAWTR 203 (301)
T ss_pred cccceehhhcCCCHHHHHHHHhcHHHHHHhcC
Confidence 45678888899999999999999999999985
No 80
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=36.14 E-value=2.7e+02 Score=23.66 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=23.4
Q ss_pred CceEEEEEEEEecCCCchH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 022784 241 FQTTLSYSVDVRPKLWLPV-------RLVEGRLCNEIKTNLSCIREAAK 282 (292)
Q Consensus 241 ~~TrVty~v~vePk~~lP~-------~Lv~~~l~~~i~~~L~alr~rAE 282 (292)
+.|.|..++++.-.+.+|. .+++..-...+...+..++.+..
T Consensus 97 ~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~ 145 (158)
T PF09366_consen 97 GRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFL 145 (158)
T ss_pred CceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678777777766655555 34444444444444444444443
No 81
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=2.2e+02 Score=22.96 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=39.3
Q ss_pred CcceEEEEEEeCCcceeEEEEEEEEccCCccccccccccCCCceEEEEEEEEecCCCchH-HHHHHHHHHHHHHHHHHHH
Q 022784 200 KKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWLPV-RLVEGRLCNEIKTNLSCIR 278 (292)
Q Consensus 200 ~~r~I~f~~veGdFk~feG~Wslep~~~g~~~~~~~~~~~~~~TrVty~v~vePk~~lP~-~Lv~~~l~~~i~~~L~alr 278 (292)
+.++++|.---.-=..+.|.-.|++..-. ++.|++.---.+.+- .+|- .-+.+.+......+-.++|
T Consensus 20 P~reL~W~~~~~~~~l~~~~~~~~le~~~-----------~~~t~~~q~e~F~Gv-lv~fv~~lr~~~~~~f~~~n~alr 87 (93)
T COG4891 20 PLRELTWLGNVRFPGLLDGERYFELEALW-----------GGRTRFAQGESFSGV-LVPFVSELRRGLTASFENMNPALR 87 (93)
T ss_pred cchheeeecccccceEEeeEEEEEEeecC-----------Cccceeeccceecce-eeccchhhhccchhhhhhhCHHHH
Confidence 35788887422111234555555543321 246775543333221 1121 1155677778888889999
Q ss_pred HHHHH
Q 022784 279 EAAKK 283 (292)
Q Consensus 279 ~rAE~ 283 (292)
++||+
T Consensus 88 ~raE~ 92 (93)
T COG4891 88 ARAEA 92 (93)
T ss_pred hhhhc
Confidence 99986
No 82
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=22.38 E-value=1.2e+02 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=29.2
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHChhhhhccc
Q 022784 117 NSRRIRSKIEIDASLDTVWHILTDYEKLADFV 148 (292)
Q Consensus 117 ~~r~I~asi~I~Appe~Vw~vLTDyE~yPeFi 148 (292)
+..+|..++.+..+.+.++++|.+.|..+-++
T Consensus 46 ~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l 77 (110)
T PF10741_consen 46 NFRRISVRVSLEGDIEALQAFLYALESGRPFL 77 (110)
T ss_pred cceEEEEEEEEEeCHHHHHHHHHHHhcCCCeE
Confidence 57789999999999999999999999988765
Done!