BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022785
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus
Star-Gsg Quaking Protein
Length = 140
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 86/119 (72%)
Query: 149 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL 208
+PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D +EE RGKP +EHL
Sbjct: 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHL 67
Query: 209 NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 267
NE LH+L+ E + +L +A E ++ LL P E D KK +L ELA+LNGT R+
Sbjct: 68 NEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRD 126
>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site
Rna By Splicing Factor 1
Length = 131
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 16/131 (12%)
Query: 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGY 205
+V IP ++YP NFVG L+GPRGN+LK +E +++IRG+GS+K+ GK G
Sbjct: 10 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE--------GKVGR 61
Query: 206 EH------LNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELA 259
+ +EPLH LV A +E V + Q R IL+ ++ ++ +D +K QLRELA
Sbjct: 62 KDGQMLPGEDEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELA 119
Query: 260 LLNGTLREEGS 270
LNGTLRE+ +
Sbjct: 120 RLNGTLREDDN 130
>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein
Length = 119
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 155 PNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGS-IKDPAREEMMRGKPGYEHLNEPLH 213
P FN ++ GP + L+ ++ T +V +RG+GS +PA G+ + EP++
Sbjct: 25 PTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA-----SGREAF----EPMY 75
Query: 214 ILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQ 253
I + P L A+++ E+LL+ V + + Q
Sbjct: 76 IYISHPKP-----EGLAAAKKLCENLLQTVHAEYSRFVNQ 110
>pdb|3R9C|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 With
Econazole Bound
pdb|3R9B|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
Length = 418
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 128 NW--LSSQGSSSGLIVKRTIRVDIPVE---KYPNFNF-VGRLLGPRGNSLKRVEASTECR 181
W L++ GS + +++ T+R D PV+ +Y + +G P+G+++ + A+
Sbjct: 278 QWAALAADGSRASAVIEETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHRD 337
Query: 182 VLIRGRGSIKDPAREEMMR---GKPGYEHLNEPLHILVEAELPVEIVDARLMQAR 233
I G DP R ++ GK + L PL L EA + + + AR +AR
Sbjct: 338 PTIVGAPDRFDPDRAQIRHLGFGKGAHFCLGAPLARL-EATVALPALAARFPEAR 391
>pdb|2DGR|A Chain A, Solution Structure Of The Second Kh Domain In Ring Finger
And Kh Domain Containing Protein 1
Length = 83
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187
+ TI+V +P + VG ++GP+G ++KR++ T ++ GR
Sbjct: 9 QTTIQVRVP------YRVVGLVVGPKGATIKRIQQRTHTYIVTPGR 48
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSI 190
R I V IPV+K +G ++GP+ + +++ T + I G+I
Sbjct: 598 RIITVKIPVDK------IGEVIGPKRQXINQIQEDTGAEITIEDDGTI 639
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSI 190
R I V IPV+K +G ++GP+ + +++ T + I G+I
Sbjct: 598 RIITVKIPVDK------IGEVIGPKRQMINQIQEDTGAEITIEDDGTI 639
>pdb|3K6T|A Chain A, Crystal Structure Of The Gld-1 Homodimerization Domain
From Caenorhabditis Elegans At 2.04 A Resolution
pdb|3K6T|B Chain B, Crystal Structure Of The Gld-1 Homodimerization Domain
From Caenorhabditis Elegans At 2.04 A Resolution
pdb|3K6T|C Chain C, Crystal Structure Of The Gld-1 Homodimerization Domain
From Caenorhabditis Elegans At 2.04 A Resolution
pdb|3K6T|D Chain D, Crystal Structure Of The Gld-1 Homodimerization Domain
From Caenorhabditis Elegans At 2.04 A Resolution
Length = 60
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 39 KYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTTLL 76
+YL++L+ E+ L F + N RLL+ EI RV L
Sbjct: 8 EYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVAL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,018,119
Number of Sequences: 62578
Number of extensions: 318325
Number of successful extensions: 765
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 8
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)