Query 022785
Match_columns 292
No_of_seqs 218 out of 464
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 5.7E-50 2E-54 340.1 7.0 130 143-272 2-131 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 5.1E-42 1.8E-46 288.1 8.0 124 140-270 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 1.8E-29 6.1E-34 209.0 8.7 102 140-254 9-111 (119)
4 3k6t_A Female germline-specifi 99.1 2.5E-11 8.5E-16 88.9 4.2 45 37-81 6-50 (60)
5 4dnn_A Protein quaking, MQKI, 99.1 3.5E-11 1.2E-15 86.6 2.2 44 38-81 4-50 (56)
6 2xa6_A KH domain-containing\,R 99.0 2.5E-10 8.7E-15 77.2 5.2 38 34-74 3-40 (41)
7 2opv_A KHSRP protein; KH domai 98.8 7.7E-09 2.6E-13 79.4 7.7 70 144-241 15-84 (85)
8 1dtj_A RNA-binding neurooncolo 98.8 1.8E-08 6.2E-13 75.3 7.2 73 142-241 2-74 (76)
9 1x4m_A FAR upstream element bi 98.7 3E-08 1E-12 77.6 6.4 75 141-243 13-87 (94)
10 4fxw_B Splicing factor 1; UHM, 98.6 3.8E-08 1.3E-12 81.8 6.2 72 62-135 43-121 (124)
11 1x4n_A FAR upstream element bi 98.5 1.1E-07 3.6E-12 74.2 6.1 70 142-241 14-83 (92)
12 2hh2_A KH-type splicing regula 98.5 2.1E-07 7.1E-12 74.6 6.7 72 144-242 8-79 (107)
13 1zzk_A Heterogeneous nuclear r 98.5 2.7E-07 9.1E-12 70.3 6.9 70 142-241 6-75 (82)
14 1we8_A Tudor and KH domain con 98.5 1.9E-07 6.6E-12 74.3 6.3 73 141-241 13-85 (104)
15 1ec6_A RNA-binding protein NOV 98.5 8.5E-08 2.9E-12 73.8 4.1 73 142-241 2-74 (87)
16 2p2r_A Poly(RC)-binding protei 98.5 1.4E-07 4.9E-12 70.7 4.6 70 142-241 4-73 (76)
17 1wvn_A Poly(RC)-binding protei 98.4 2.1E-07 7.1E-12 70.8 5.1 71 142-242 5-75 (82)
18 2dgr_A Ring finger and KH doma 98.4 3.1E-07 1.1E-11 70.9 5.7 66 142-240 9-74 (83)
19 2cte_A Vigilin; K homology typ 98.4 4.5E-07 1.6E-11 71.0 5.6 67 143-241 17-83 (94)
20 1j5k_A Heterogeneous nuclear r 98.3 4.4E-07 1.5E-11 70.2 4.6 71 141-241 12-82 (89)
21 2hh3_A KH-type splicing regula 98.3 6E-07 2.1E-11 72.2 4.8 68 144-241 12-79 (106)
22 2axy_A Poly(RC)-binding protei 98.2 8.4E-07 2.9E-11 66.3 4.6 67 143-241 5-71 (73)
23 1vig_A Vigilin; RNA-binding pr 98.2 1.5E-06 5.1E-11 64.7 5.1 65 144-240 6-70 (71)
24 2ctk_A Vigilin; K homology typ 98.2 1E-06 3.5E-11 70.4 3.9 67 143-241 17-83 (104)
25 2ctl_A Vigilin; K homology typ 98.1 4E-06 1.4E-10 66.1 6.4 69 144-241 18-86 (97)
26 3krm_A Insulin-like growth fac 98.1 2.7E-06 9.2E-11 71.4 5.6 73 141-241 83-155 (163)
27 2ctm_A Vigilin; K homology typ 98.0 4E-06 1.4E-10 65.9 4.8 67 144-241 18-84 (95)
28 2jvz_A KH type-splicing, FAR u 98.0 1.5E-05 5.3E-10 66.4 7.9 72 144-243 3-74 (164)
29 1j4w_A FUSE binding protein; s 97.9 1.3E-05 4.3E-10 68.2 6.3 71 143-240 104-174 (174)
30 2jvz_A KH type-splicing, FAR u 97.8 2E-05 6.7E-10 65.7 4.8 60 158-241 100-159 (164)
31 2jzx_A Poly(RC)-binding protei 97.7 1.8E-05 6E-10 66.1 3.8 69 143-240 89-157 (160)
32 1j4w_A FUSE binding protein; s 97.7 2.5E-05 8.6E-10 66.3 4.5 68 144-241 4-71 (174)
33 2ctj_A Vigilin; K homology typ 97.7 2.6E-05 8.9E-10 61.4 3.7 66 144-241 18-84 (95)
34 2jzx_A Poly(RC)-binding protei 97.6 5.4E-05 1.9E-09 63.1 4.9 67 142-240 4-70 (160)
35 2anr_A Neuro-oncological ventr 97.6 3E-05 1E-09 65.9 3.2 72 143-242 104-175 (178)
36 1tua_A Hypothetical protein AP 97.6 6.9E-05 2.4E-09 66.2 5.5 54 158-242 107-160 (191)
37 2anr_A Neuro-oncological ventr 97.6 4.8E-05 1.6E-09 64.7 4.0 74 143-243 6-79 (178)
38 3krm_A Insulin-like growth fac 97.5 0.00013 4.6E-09 60.9 5.6 68 144-240 4-71 (163)
39 2e3u_A PH-DIM2P, hypothetical 97.4 0.00021 7.2E-09 64.2 5.9 53 159-242 139-191 (219)
40 2cpq_A FragIle X mental retard 97.4 0.00011 3.8E-09 57.9 3.5 64 144-241 16-80 (91)
41 3u1k_A Polyribonucleotide nucl 96.9 0.00042 1.4E-08 70.8 3.3 62 144-240 568-629 (630)
42 2qnd_A FMR1 protein; KH domain 96.1 0.0064 2.2E-07 50.7 5.2 71 145-241 69-141 (144)
43 2e3u_A PH-DIM2P, hypothetical 95.8 0.0063 2.2E-07 54.5 3.8 64 144-241 35-102 (219)
44 4aid_A Polyribonucleotide nucl 95.1 0.0044 1.5E-07 64.4 0.5 57 158-243 579-635 (726)
45 2ctf_A Vigilin; K homology typ 94.8 0.048 1.6E-06 43.1 5.6 64 143-241 27-91 (102)
46 3n89_A Defective in GERM LINE 94.1 0.071 2.4E-06 51.5 6.2 74 141-239 28-103 (376)
47 2qnd_A FMR1 protein; KH domain 93.2 0.12 4.1E-06 42.9 5.3 31 143-179 4-34 (144)
48 3v69_A Protein filia; RNA-bind 90.0 0.087 3E-06 44.4 1.1 30 157-186 64-93 (140)
49 1tua_A Hypothetical protein AP 89.3 0.4 1.4E-05 42.1 4.8 37 144-186 5-41 (191)
50 3cdi_A Polynucleotide phosphor 88.4 0.089 3E-06 54.6 0.0 35 158-192 569-603 (723)
51 3n89_A Defective in GERM LINE 85.9 0.61 2.1E-05 45.0 4.2 62 159-240 196-259 (376)
52 1e3p_A Guanosine pentaphosphat 71.9 0.56 1.9E-05 48.9 -1.1 31 158-188 607-637 (757)
53 2cxc_A NUSA; transcription ter 67.9 2.1 7.3E-05 35.9 1.8 37 146-186 37-73 (144)
54 2z0s_A Probable exosome comple 62.7 30 0.001 30.5 8.5 68 158-252 157-224 (235)
55 2pt7_G HP1451, hypothetical pr 35.9 8.7 0.0003 32.4 0.3 57 160-240 44-101 (152)
56 2asb_A Transcription elongatio 34.1 13 0.00045 33.9 1.2 40 146-186 115-155 (251)
57 1k0r_A NUSA; two component arr 29.9 17 0.00058 34.8 1.3 40 146-186 238-278 (366)
58 2ba0_A Archeal exosome RNA bin 27.3 1.2E+02 0.0041 26.6 6.3 74 158-260 145-218 (229)
59 3k5i_A Phosphoribosyl-aminoimi 26.1 1.1E+02 0.0039 28.2 6.3 51 171-237 349-399 (403)
60 1xao_A YDJ1, mitochondrial pro 24.4 77 0.0026 24.9 4.1 49 177-241 47-97 (121)
61 2kie_A Inositol polyphosphate 22.7 29 0.00098 28.3 1.2 34 149-187 61-94 (124)
62 3a2a_A Voltage-gated hydrogen 22.7 37 0.0013 24.2 1.6 24 59-82 31-54 (58)
63 1wjw_A Phosphoacetylglucosamin 21.5 2.8E+02 0.0096 21.3 6.8 52 169-240 45-97 (112)
64 3iev_A GTP-binding protein ERA 21.0 30 0.001 31.1 1.1 41 140-185 237-285 (308)
65 2je6_I RRP4, exosome complex R 20.9 20 0.00068 32.2 -0.1 27 158-184 164-190 (251)
66 3isp_A HTH-type transcriptiona 20.7 40 0.0014 28.6 1.8 19 170-188 40-58 (303)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=5.7e-50 Score=340.13 Aligned_cols=130 Identities=45% Similarity=0.792 Sum_probs=125.9
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
+++|||||+++||+|||||+||||||+|+|+||++|||||.||||||+|++++|+.++|+|+|+|++|||||+|++++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCcccCCCCCC
Q 022785 223 EIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEGSPM 272 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~pv~e~~d~~Kr~QL~ELA~lNGt~r~~~~~~ 272 (292)
++|+++|++|+++|++||.|++|++|++|++||+|||+||||||+++.+.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 99999999999999999999999999999999999999999999986554
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=5.1e-42 Score=288.08 Aligned_cols=124 Identities=40% Similarity=0.653 Sum_probs=109.3
Q ss_pred ceeeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEec
Q 022785 140 IVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAE 219 (292)
Q Consensus 140 ~vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~ 219 (292)
..|+++||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++++++. .+...|+|++|||||+|+|+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~--~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSS--CCCCCSCCSSCCEEEEEEES
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccc--cccccccccCCCeEEEEEEC
Confidence 3688999999999999999999999999999999999999999999999999976542 23345789999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHHhcCcccCCCC
Q 022785 220 LPVEIVDARLMQAREILEDLLKP---VDESHDFYKKQQLRELALLNGTLREEGS 270 (292)
Q Consensus 220 ~~~~~~~~rl~~A~e~Ie~LL~p---v~e~~d~~Kr~QL~ELA~lNGt~r~~~~ 270 (292)
+++ ++++|+++|++||.+ +++++|++|++||+|||+||||||+++.
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 875 689999999999975 7899999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=208.98 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=91.6
Q ss_pred ceeeEEEEeccCC-CCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEe
Q 022785 140 IVKRTIRVDIPVE-KYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEA 218 (292)
Q Consensus 140 ~vk~~~Ki~IPv~-~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a 218 (292)
++.+++|||||++ .||+|||+|+||||+|+|+|+||++|||||.|||+||++.+.. . -++++|||||+|++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~-------~-~~e~~e~l~V~I~a 80 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA-------S-GREAFEPMYIYISH 80 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT-------T-SSCCSSBCEEEEEE
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc-------c-ccccCCCcEEEEEe
Confidence 4678999999999 6999999999999999999999999999999999999985422 1 23689999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 022785 219 ELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQ 254 (292)
Q Consensus 219 ~~~~~~~~~rl~~A~e~Ie~LL~pv~e~~d~~Kr~Q 254 (292)
.+++ .+++|+++|+.||.++.+.++++|++|
T Consensus 81 ~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 81 PKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp SSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 9976 589999999999999999999999776
No 4
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.14 E-value=2.5e-11 Score=88.94 Aligned_cols=45 Identities=33% Similarity=0.488 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCcc
Q 022785 37 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTTLLGNASV 81 (292)
Q Consensus 37 ~~~YL~eLl~E~~~L~~~~~~~~h~~rLL~~EI~RV~~~l~~~~~ 81 (292)
..+||++||+||.+|..|+++|.|+.|||++||.||+..|++..+
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~ 50 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEF 50 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 469999999999999999999999999999999999999998766
No 5
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.07 E-value=3.5e-11 Score=86.58 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCCCC---chHHHHHHHHHHHHHHHHHhhcCcc
Q 022785 38 EKYLSELLAERHKLNPFLP---VLPNAYRLLNQEIMRVTTLLGNASV 81 (292)
Q Consensus 38 ~~YL~eLl~E~~~L~~~~~---~~~h~~rLL~~EI~RV~~~l~~~~~ 81 (292)
.+||++||+||.+|..|++ +|.|+.|||++||.||+..|++..+
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq~~~ 50 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYNDTL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6999999999999999887 9999999999999999999997643
No 6
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=99.04 E-value=2.5e-10 Score=77.24 Aligned_cols=38 Identities=37% Similarity=0.653 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHH
Q 022785 34 ILDQEKYLSELLAERHKLNPFLPVLPNAYRLLNQEIMRVTT 74 (292)
Q Consensus 34 ~~~~~~YL~eLl~E~~~L~~~~~~~~h~~rLL~~EI~RV~~ 74 (292)
++..++||.||++||.+|+|. |.||.|||++||+|+.+
T Consensus 3 m~~~~kyLpeL~aEk~sLdPs---f~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 3 MEPENKYLPELMAEKDSLDPS---FTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp --CHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccCch---HHHHHHHHHHHHHHHHc
Confidence 556789999999999999994 79999999999999975
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.84 E-value=7.7e-09 Score=79.43 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=56.3
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
..+|.||. +++|+|||++|.|+|+|+++|||+|.|...|+.. ...+-+|.|++ +++
T Consensus 15 ~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~- 70 (85)
T 2opv_A 15 VQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY- 70 (85)
T ss_dssp EEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH-
T ss_pred EEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH-
Confidence 56788885 5899999999999999999999999998755410 12346799999 665
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 022785 224 IVDARLMQAREILEDLLK 241 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|+.++.
T Consensus 71 ----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 ----KVQQACEMVMDILR 84 (85)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhc
Confidence 57999999999874
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.76 E-value=1.8e-08 Score=75.28 Aligned_cols=73 Identities=23% Similarity=0.470 Sum_probs=56.3
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
|.+.++.||. +++|+|||++|.|+|+|+++|||+|.|...+... ++ ..+=.|.|++. +
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----------~~----~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-H
T ss_pred ceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-----------CC----CceeEEEEEeC-H
Confidence 4567788885 5899999999999999999999999998643211 11 23357888885 4
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .+++|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57999999999875
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.67 E-value=3e-08 Score=77.63 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=58.6
Q ss_pred eeeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecC
Q 022785 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAEL 220 (292)
Q Consensus 141 vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~ 220 (292)
-..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-..|... ...+-.|.|++ +
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 13 GNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-D 69 (94)
T ss_dssp CCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-C
T ss_pred CcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-C
Confidence 34567888885 4899999999999999999999999997644311 12346788998 5
Q ss_pred chhHHHHHHHHHHHHHHHhcCCC
Q 022785 221 PVEIVDARLMQAREILEDLLKPV 243 (292)
Q Consensus 221 ~~~~~~~rl~~A~e~Ie~LL~pv 243 (292)
++ .+++|+++|+.++...
T Consensus 70 ~~-----~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 70 PY-----KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp TT-----THHHHHHHHHHHHCCC
T ss_pred HH-----HHHHHHHHHHHHHhcc
Confidence 55 4799999999998753
No 10
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=98.63 E-value=3.8e-08 Score=81.83 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhcCccC-C-CCCCCCCCC---CCCCCCcCCCCCCccchhhhhHHHHhhhhhccc--cCccCCCCC
Q 022785 62 YRLLNQEIMRVTTLLGNASVL-G-QSGLEHASP---LTSGGIFSNGGADTNGLASRFQSEISGLMQSSS--AQNWLSSQG 134 (292)
Q Consensus 62 ~rLL~~EI~RV~~~l~~~~~~-~-~~~~~~~SP---~~s~g~~~N~~~~~~~~~~~~~~Er~~li~~~~--~~~~~~p~~ 134 (292)
..++...|+.|+.+|..+.+. + .+..||+|| |++.|.++||++ .+++++|++|||+||+.++ +|+|++|.+
T Consensus 43 ay~~~~RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE--~R~r~~LE~ER~~lIe~~~k~~P~fkpP~D 120 (124)
T 4fxw_B 43 AYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTRE--FRTRKKLEEERHNLITEMVALNPDFKPPAD 120 (124)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSCBSSCHH--HHHHHHHHHHHHHHHHHGGGTCSSCCCCCC
T ss_pred HHHHHhhHHHHHHHHhcCCcCCCCCcccCCCCCCCccCccccccchHH--HHHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 355667899999999999883 3 357889997 789999999986 2477999999999999874 689998887
Q ss_pred C
Q 022785 135 S 135 (292)
Q Consensus 135 ~ 135 (292)
|
T Consensus 121 Y 121 (124)
T 4fxw_B 121 Y 121 (124)
T ss_dssp -
T ss_pred C
Confidence 6
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.54 E-value=1.1e-07 Score=74.25 Aligned_cols=70 Identities=19% Similarity=0.449 Sum_probs=54.8
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|..... + ..+-.|.|++. +
T Consensus 14 ~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--------------g----~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 14 VMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG--------------G----LPERSCMLTGT-P 68 (92)
T ss_dssp CEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT--------------T----CSEEEEEEEEC-H
T ss_pred CEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC--------------C----CCccEEEEEeC-H
Confidence 4567788885 59999999999999999999999999976321 0 12346888885 4
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .+++|+++|++++.
T Consensus 69 e-----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 69 E-----SVQSAKRLLDQIVE 83 (92)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 47899999999875
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=74.62 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=54.6
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+.+|.||. ++||+|||++|.|+|+|+++|||+|.|.....- . ....+=.|.|++ +++
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-------------~--~~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-------------N--GDPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-------------T--CCTTEEEEEEES-CHH-
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-------------C--CCCCceEEEEEC-CHH-
Confidence 45788875 589999999999999999999999999763210 0 011234677887 554
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 022785 224 IVDARLMQAREILEDLLKP 242 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~p 242 (292)
.+++|+++|++++.-
T Consensus 65 ----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp ----HHHHHHHHHHHHSCS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 579999999999864
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.49 E-value=2.7e-07 Score=70.32 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=53.9
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
+.+.+|.||. +++|.|||++|.++|+|+++|||+|.|... .++ ..+=.|.|++ ++
T Consensus 6 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------------~~~----~~~~~v~I~G-~~ 60 (82)
T 1zzk_A 6 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP--------------LEG----SEDRIITITG-TQ 60 (82)
T ss_dssp CEEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCT--------------TSC----SSEEEEEEEE-CH
T ss_pred eEEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCC--------------CCC----CCceEEEEEe-CH
Confidence 3466788886 489999999999999999999999999641 011 1224788888 45
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .+++|+++|++++.
T Consensus 61 ~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 61 D-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 57899999999874
No 14
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.48 E-value=1.9e-07 Score=74.29 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=56.2
Q ss_pred eeeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecC
Q 022785 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAEL 220 (292)
Q Consensus 141 vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~ 220 (292)
...+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-...... ..++=.|.|++..
T Consensus 13 ap~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~I~G~~ 70 (104)
T 1we8_A 13 TPVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIKISGTQ 70 (104)
T ss_dssp CEEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEEEEEEH
T ss_pred CCEEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEEEEcCH
Confidence 33567888884 5899999999999999999999999997642110 1234578888854
Q ss_pred chhHHHHHHHHHHHHHHHhcC
Q 022785 221 PVEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 221 ~~~~~~~rl~~A~e~Ie~LL~ 241 (292)
. .+++|+++|+.++.
T Consensus 71 ~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 71 K------EVAAAKHLILEKVS 85 (104)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHh
Confidence 3 47999999999985
No 15
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.48 E-value=8.5e-08 Score=73.77 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=55.4
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
|.+.++.||. +++|+|||++|.|+|+|+++|||+|.|-..+... ++ ...=.|.|++. +
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----------~g----~~~r~v~I~G~-~ 59 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-P 59 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-----------TT----SCEEEEEEESS-H
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-----------CC----CCceEEEEEcC-H
Confidence 4466788875 5899999999999999999999999997643211 11 12356788875 4
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .++.|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 60 A-----ATQAAQYLISQRVT 74 (87)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57999999999985
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.45 E-value=1.4e-07 Score=70.67 Aligned_cols=70 Identities=11% Similarity=0.276 Sum_probs=55.0
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
..+.++.||. +++|.|||++|.++|+|+++|||+|.|-.. . + ...+=.|.|++. +
T Consensus 4 ~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~----------~----~~~~~~v~I~G~-~ 58 (76)
T 2p2r_A 4 TTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANP----V----------E----GSTDRQVTITGS-A 58 (76)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCC----C----------T----TCSEEEEEEEEC-H
T ss_pred ceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCC----C----------C----CCCeEEEEEEeC-H
Confidence 3466788875 589999999999999999999999999751 0 1 123357888885 5
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .+++|+++|+.++.
T Consensus 59 ~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 59 A-----SISLAQYLINVRLS 73 (76)
T ss_dssp H-----HHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 57999999999886
No 17
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=2.1e-07 Score=70.84 Aligned_cols=71 Identities=14% Similarity=0.297 Sum_probs=54.9
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
..+.++.||. +++|.|||++|.++|+|+++|||+|.|-... + ...+=.|.|++..
T Consensus 5 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~--------------~----~~~~r~v~I~G~~- 59 (82)
T 1wvn_A 5 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV--------------E----GSSGRQVTITGSA- 59 (82)
T ss_dssp CEEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC--------------T----TCSEEEEEEEECH-
T ss_pred cEEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC--------------C----CCCceEEEEEcCH-
Confidence 3466788875 5899999999999999999999999997521 0 0233578888853
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 022785 222 VEIVDARLMQAREILEDLLKP 242 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~p 242 (292)
+ .+++|+++|+.++..
T Consensus 60 ~-----~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 60 A-----SISLAQYLINARLSS 75 (82)
T ss_dssp H-----HHHHHHHHHHHHTC-
T ss_pred H-----HHHHHHHHHHHHHHh
Confidence 3 589999999999863
No 18
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=3.1e-07 Score=70.87 Aligned_cols=66 Identities=32% Similarity=0.566 Sum_probs=50.8
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
..+..|.||. +++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++..
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~~- 60 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGMP- 60 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEECT-
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcCH-
Confidence 4466777763 7999999999999999999999999995421 122 47777754
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 022785 222 VEIVDARLMQAREILEDLL 240 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL 240 (292)
+ .+++|+++|+.++
T Consensus 61 e-----~v~~A~~~I~~~i 74 (83)
T 2dgr_A 61 E-----NVDRAREEIEAHI 74 (83)
T ss_dssp T-----THHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHH
Confidence 4 3788999998865
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.36 E-value=4.5e-07 Score=70.96 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=52.4
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+..|.||.+ ++|.||||+|.|+|+|+++|||+|.|-..++ +.=.|.|++. ++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~e 69 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-KE 69 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-HH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-HH
Confidence 4677888844 7899999999999999999999999954211 1137889886 54
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 70 -----GIEKARHEVLLISA 83 (94)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhh
Confidence 57889999988864
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.32 E-value=4.4e-07 Score=70.17 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=54.1
Q ss_pred eeeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecC
Q 022785 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAEL 220 (292)
Q Consensus 141 vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~ 220 (292)
...+.+|.||. +++|+|||++|.|+|+|+++|||+|.|...- ++ ..+=.|.|++.
T Consensus 12 ~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~--------------~~----~~~~~v~I~G~- 66 (89)
T 1j5k_A 12 PIITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL--------------EG----SEDRIITITGT- 66 (89)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCC--------------SS----SSEEEEEEEEE-
T ss_pred CeEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCC--------------CC----CCccEEEEEcC-
Confidence 34567788875 5899999999999999999999999996410 10 12246788885
Q ss_pred chhHHHHHHHHHHHHHHHhcC
Q 022785 221 PVEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 221 ~~~~~~~rl~~A~e~Ie~LL~ 241 (292)
++ .+++|+++|++++.
T Consensus 67 ~e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 67 QD-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 44 47899999998874
No 21
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.29 E-value=6e-07 Score=72.16 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=52.5
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+.+|.||. ++||+|||+.|.|+|+|+++|||+|.|.-.+. ...+-.|.|++. ++
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-~e- 65 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD- 65 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-HH-
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-HH-
Confidence 45677774 57899999999999999999999999974210 122357888875 43
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 022785 224 IVDARLMQAREILEDLLK 241 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|++++.
T Consensus 66 ----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 ----RCEHAARIINDLLQ 79 (106)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHh
Confidence 57899999999874
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.25 E-value=8.4e-07 Score=66.30 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=52.8
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
...++.||. +.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|++. ++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~~ 57 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP-TN 57 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-HH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-HH
Confidence 456788874 68999999999999999999999999975321 1135778886 54
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.+.+|+++|.++|.
T Consensus 58 -----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 58 -----AIFKAFAMIIDKLE 71 (73)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 47899999998874
No 23
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.21 E-value=1.5e-06 Score=64.67 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=50.0
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+..+.||. .++|.||||+|.++++|+++|||+|.|--.|. .+=-|.|++. ++
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--------------------~~~~V~I~G~-~~- 57 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--------------------KSNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--------------------SSEEEEEEES-SH-
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--------------------cccEEEEEcC-HH-
Confidence 34566653 58999999999999999999999999865332 0126888886 43
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022785 224 IVDARLMQAREILEDLL 240 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL 240 (292)
.+++|+++|+.++
T Consensus 58 ----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 58 ----GVQQAKRELLELA 70 (71)
T ss_dssp ----HHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHh
Confidence 4799999999875
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.18 E-value=1e-06 Score=70.43 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=53.1
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+..+.||. .++|+||||+|.|+|+|+++|||+|.|--.|+ ++=.|.|++.. +
T Consensus 17 ~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--------------------~~~~V~I~G~~-e 69 (104)
T 2ctk_A 17 VTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--------------------QSDIIAITGLA-A 69 (104)
T ss_dssp EEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--------------------TCCEEEEEECH-H
T ss_pred EEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC--------------------CcceEEEEcCH-H
Confidence 566777773 57899999999999999999999999965332 01178888863 3
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 70 -----NLDRAKAGLLERVK 83 (104)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 48999999999875
No 25
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=4e-06 Score=66.09 Aligned_cols=69 Identities=9% Similarity=0.239 Sum_probs=51.8
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+..+.||. .++|+||||+|.|+|+|+++|||+|.|--.|.. + ...=.|.|++. .+
T Consensus 18 ~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~-------------~----~~~~~V~I~G~-~e- 72 (97)
T 2ctl_A 18 KLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG-------------N----QPQDQITITGY-EK- 72 (97)
T ss_dssp EEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTC-------------S----SCSSEEEEESC-HH-
T ss_pred eEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCC-------------C----CCccEEEEEeC-HH-
Confidence 55677773 578999999999999999999999999654421 0 12246888885 43
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 022785 224 IVDARLMQAREILEDLLK 241 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~ 241 (292)
.+.+|+++|+.++.
T Consensus 73 ----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 ----NTEAARDAILRIVG 86 (97)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 47888999988864
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.12 E-value=2.7e-06 Score=71.36 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=56.7
Q ss_pred eeeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecC
Q 022785 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAEL 220 (292)
Q Consensus 141 vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~ 220 (292)
...+.++.||. +++|+|||++|.++|+|+++|||+|.|-..+. | ..++.-.|.|++ +
T Consensus 83 ~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~ 139 (163)
T 3krm_A 83 VKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-H 139 (163)
T ss_dssp CCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-C
T ss_pred CceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-C
Confidence 34556788873 78999999999999999999999999976432 1 123444788888 5
Q ss_pred chhHHHHHHHHHHHHHHHhcC
Q 022785 221 PVEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 221 ~~~~~~~rl~~A~e~Ie~LL~ 241 (292)
++ .+++|.++|+++|.
T Consensus 140 ~~-----~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 140 FY-----ASQMAQRKIRDILA 155 (163)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 54 47999999999985
No 27
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.04 E-value=4e-06 Score=65.95 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=50.9
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+..+.||. .++|+||||+|.|+|+|+++|||+|.|-..|+. .+=.|.|++. ++
T Consensus 18 t~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e- 70 (95)
T 2ctm_A 18 SEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE- 70 (95)
T ss_dssp CEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH-
T ss_pred EEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH-
Confidence 45677774 468999999999999999999999999654421 1236888885 33
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 022785 224 IVDARLMQAREILEDLLK 241 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|++.|+.|+.
T Consensus 71 ----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 ----NVEEAIDHILNLEE 84 (95)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 47888888888753
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.00 E-value=1.5e-05 Score=66.40 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=53.6
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+.++.||. +++|.|||++|.|+|+|+++|||+|.|--.+.. + ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------------~----~~~~r~v~I~G-~~~- 58 (164)
T 2jvz_A 3 VQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY- 58 (164)
T ss_dssp EEEEEECT------TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS------------S----SSSCEEEEEEE-CHH-
T ss_pred EEEEEech------hheeEEECCChHHHHHHHHHhCCeEEEecCCCC------------C----CCCceEEEEEc-CHH-
Confidence 45788875 469999999999999999999999999532210 0 12234677888 443
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 022785 224 IVDARLMQAREILEDLLKPV 243 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~pv 243 (292)
.+.+|.++|..++...
T Consensus 59 ----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 59 ----KVQQACEMVMDILRER 74 (164)
T ss_dssp ----HHHHHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 5789999999998753
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.94 E-value=1.3e-05 Score=68.15 Aligned_cols=71 Identities=14% Similarity=0.331 Sum_probs=52.5
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+.++.||. +++|+|||++|.|+|+|+++|||+|.|-...... .. ..+=.|.|++ +++
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~-~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------AD-PNMKLFTIRG-TPQ 161 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------SC-TTEEEEEEEC-CHH
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------CC-CCceEEEEEC-CHH
Confidence 356778873 6899999999999999999999999998642110 00 1223577877 444
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 022785 223 EIVDARLMQAREILEDLL 240 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL 240 (292)
.+++|.++|+++|
T Consensus 162 -----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 -----QIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhC
Confidence 5799999999875
No 30
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=65.75 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=47.4
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
+++|+|||++|.|+|+|+++|||+|.|-.... ...+=.|.|++. ++ .+++|.++|+
T Consensus 100 ~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-~~-----~v~~A~~~I~ 155 (164)
T 2jvz_A 100 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD-----RCEHAARIIN 155 (164)
T ss_dssp TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-HH-----HHHHHHHHHH
T ss_pred hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-HH-----HHHHHHHHHH
Confidence 58999999999999999999999999975321 012246778874 43 5789999999
Q ss_pred HhcC
Q 022785 238 DLLK 241 (292)
Q Consensus 238 ~LL~ 241 (292)
.+|.
T Consensus 156 ~~i~ 159 (164)
T 2jvz_A 156 DLLQ 159 (164)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=1.8e-05 Score=66.14 Aligned_cols=69 Identities=22% Similarity=0.419 Sum_probs=52.6
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+.++.||- +++|+|||++|.++|+|+++|||+|.|.+.. .|+ ..+=.|.|++ +++
T Consensus 89 ~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~-------------~~~----~~~~~v~I~G-~~~ 144 (160)
T 2jzx_A 89 VTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-------------LPN----STERAITIAG-IPQ 144 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC-------------STT----CCEEEEEEEE-CHH
T ss_pred EEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC-------------CCC----CCceEEEEEc-CHH
Confidence 466788873 6999999999999999999999999997521 011 1234678888 454
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 022785 223 EIVDARLMQAREILEDLL 240 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL 240 (292)
.+++|+++|.+++
T Consensus 145 -----~v~~A~~~I~~~i 157 (160)
T 2jzx_A 145 -----SIIECVKQICVVM 157 (160)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 4788999988876
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.71 E-value=2.5e-05 Score=66.29 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=51.2
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+.++.||. +++|+|||++|.++|+|+++|||+|.|-.. +. ...+-.|.|++. ++
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~--------------~~~~r~v~I~G~-~~- 57 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----DG--------------TTPERIAQITGP-PD- 57 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC----TT--------------SCSEEEEEEEEC-HH-
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC----CC--------------CCCccEEEEEeC-HH-
Confidence 45677774 589999999999999999999999999641 10 012246778875 33
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 022785 224 IVDARLMQAREILEDLLK 241 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL~ 241 (292)
.+.+|+++|.+++.
T Consensus 58 ----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 58 ----RAQHAAEIITDLLR 71 (174)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 47889999988875
No 33
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.67 E-value=2.6e-05 Score=61.45 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=49.7
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhh-CceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAST-ECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eT-gckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
+..+.||. .+++.||||+|.++|+|+++| ||+|.|--.|+. .=.|.|.+.+.
T Consensus 18 t~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~- 70 (95)
T 2ctj_A 18 EVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS- 70 (95)
T ss_dssp CEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH-
T ss_pred EEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH-
Confidence 34566664 477899999999999999999 999988543321 12588887542
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|+.++.
T Consensus 71 -----~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 71 -----DVEKAKKQLLHLAE 84 (95)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 47899999998864
No 34
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.60 E-value=5.4e-05 Score=63.15 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=49.5
Q ss_pred eeEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 142 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 142 k~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
.++.++.||. .++|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|++. +
T Consensus 4 ~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~-~ 56 (160)
T 2jzx_A 4 TLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP-T 56 (160)
T ss_dssp EEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE-H
T ss_pred cEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC-H
Confidence 4566788874 58999999999999999999999999975321 1235777775 3
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 022785 222 VEIVDARLMQAREILEDLL 240 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL 240 (292)
+ .+.+|...|.+++
T Consensus 57 ~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 57 N-----AIFKAFAMIIDKL 70 (160)
T ss_dssp H-----HHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHH
Confidence 3 3667777766554
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.58 E-value=3e-05 Score=65.90 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=53.1
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+.++.||. +++|+|||++|.++|+|+++|||+|.|-..... + + ..+=.|.|++.. +
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~------------~---~-~~~~~v~I~G~~-~ 160 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG------------I---N-LQNRVVTVSGEP-E 160 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH-H
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC------------C---C-CCceEEEEEcCH-H
Confidence 456788874 689999999999999999999999999753210 0 0 122357777743 2
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 022785 223 EIVDARLMQAREILEDLLKP 242 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~p 242 (292)
.+++|+++|.++|..
T Consensus 161 -----~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 161 -----QNRKAVELIIQKIQE 175 (178)
T ss_dssp -----HHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHh
Confidence 578999999998753
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.58 E-value=6.9e-05 Score=66.17 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
..+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+ +++ .++.|...|+
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G-~~~-----~i~~Ar~~i~ 155 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIG-DYE-----RAMAAKQAIE 155 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEE-EHH-----HHHHHHHHHH
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEe-ChH-----HHHHHHHHHH
Confidence 368999999999999999999999999652 344444 333 4688999999
Q ss_pred HhcCC
Q 022785 238 DLLKP 242 (292)
Q Consensus 238 ~LL~p 242 (292)
+|+.-
T Consensus 156 ~li~g 160 (191)
T 1tua_A 156 MLAEG 160 (191)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 99864
No 37
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.56 E-value=4.8e-05 Score=64.67 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=53.1
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
.+.++.||. .++|+|||++|.++|+|+++|||+|.|--.+... ++ ..+ =.|.|++. ++
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----------~~---~~e-r~v~I~G~-~~ 63 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----------PG---TTE-RVCLIQGT-IE 63 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----------TT---SSE-EEEEEEEC-HH
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----------CC---CCC-ceEEEEeC-HH
Confidence 456788875 5899999999999999999999999996432110 11 111 24667774 33
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q 022785 223 EIVDARLMQAREILEDLLKPV 243 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~pv 243 (292)
.+.+|.++|.+++...
T Consensus 64 -----~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 64 -----ALNAVHGFIAEKIREM 79 (178)
T ss_dssp -----HHHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 4788999999888643
No 38
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.47 E-value=0.00013 Score=60.93 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=47.7
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
+.++.||. .++|.|||++|.++|+|+++|||+|.|--.+. ++ ..+--|.|++ +++
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-------------~~----~~~r~v~I~G-~~e- 58 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPET-------------PD----SKVRMVIITG-PPE- 58 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS-------------TT----CSEEEEEEEE-CHH-
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCC-------------CC----CCceEEEEEc-CHH-
Confidence 45677774 47999999999999999999999999976431 10 1223577777 444
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022785 224 IVDARLMQAREILEDLL 240 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL 240 (292)
.+.+|...|..++
T Consensus 59 ----~v~~A~~~I~~~~ 71 (163)
T 3krm_A 59 ----AQFKAQGRIYGKL 71 (163)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 3556666665544
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.37 E-value=0.00021 Score=64.17 Aligned_cols=53 Identities=21% Similarity=0.448 Sum_probs=43.6
Q ss_pred ccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHHH
Q 022785 159 FVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILED 238 (292)
Q Consensus 159 fvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~ 238 (292)
.+|||||+.|.|+|.||..|||+|.|-| . .|.|.+ +++ .++.|...|++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-----------------------~--~v~i~G-~~~-----~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-----------------------K--TVAIIG-NPI-----QIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-----------------------T--EEEEEE-CHH-----HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-----------------------e--EEEEEe-CHH-----HHHHHHHHHHH
Confidence 5899999999999999999999999954 1 255666 333 47899999999
Q ss_pred hcCC
Q 022785 239 LLKP 242 (292)
Q Consensus 239 LL~p 242 (292)
|+.-
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9964
No 40
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.36 E-value=0.00011 Score=57.88 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=50.2
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCce-EEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCch
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECR-VLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPV 222 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgck-I~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~ 222 (292)
...+.||. .++|.+|||+|.|+|+|+++|||+ |.|-- ++=.|.|.+.+.+
T Consensus 16 i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------------------ddG~V~I~g~~~e 66 (91)
T 2cpq_A 16 HEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------------------DTGTFRIYGESAD 66 (91)
T ss_dssp EEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------------------TTTEEEEEESSHH
T ss_pred EEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------------------CCCEEEEEECCHH
Confidence 44566663 479999999999999999999998 99931 1136889998765
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.+++|+++|+.+-.
T Consensus 67 -----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 67 -----AVKKARGFLEFVED 80 (91)
T ss_dssp -----HHHHHHHHHSCCCC
T ss_pred -----HHHHHHHHHHhhhe
Confidence 47899999987754
No 41
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.89 E-value=0.00042 Score=70.84 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=48.6
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE 223 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~ 223 (292)
...+.||. ..+|.||||+|.|+|.|+++|||+|.|-- +=.|.|.+.+.+
T Consensus 568 ~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------------------------~G~V~I~~~~~~- 616 (630)
T 3u1k_A 568 VETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVD------------------------EETFSVFAPTPS- 616 (630)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECS------------------------SSEEEEEESSHH-
T ss_pred EEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcC------------------------CcEEEEEeCCHH-
Confidence 44566664 47899999999999999999999998742 136889998765
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022785 224 IVDARLMQAREILEDLL 240 (292)
Q Consensus 224 ~~~~rl~~A~e~Ie~LL 240 (292)
.+++|+++|+.++
T Consensus 617 ----~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 617 ----AMHEARDFITEIC 629 (630)
T ss_dssp ----HHHHHHHHTTC--
T ss_pred ----HHHHHHHHHHHHh
Confidence 5799999998875
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.12 E-value=0.0064 Score=50.66 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=50.1
Q ss_pred EEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCc-eEEEeccCCCCCcchhhhccCCCCCCCCCCCc-eEEEEecCch
Q 022785 145 IRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTEC-RVLIRGRGSIKDPAREEMMRGKPGYEHLNEPL-HILVEAELPV 222 (292)
Q Consensus 145 ~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgc-kI~IRGrGS~kd~~~e~~l~g~p~~ehl~epL-HVlI~a~~~~ 222 (292)
..|.||- +.+|++||-+|.|+|.+++.||| +|.|.+..... .+ .++.+ -|.|++.- +
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----------~~----~~~~~~~vtI~G~~-~ 127 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----------VP----QEEGMVPFVFVGTK-D 127 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----------CC----CCTTEEEEEEEEEH-H
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----------cc----ccCCeeEEEEEeCH-H
Confidence 4566653 57899999999999999999998 99998743210 01 12222 25566642 2
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 022785 223 EIVDARLMQAREILEDLLK 241 (292)
Q Consensus 223 ~~~~~rl~~A~e~Ie~LL~ 241 (292)
.++.|.++|+..|.
T Consensus 128 -----~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 128 -----SIANATVLLDYHLN 141 (144)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 58899999998875
No 43
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.76 E-value=0.0063 Score=54.51 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=49.1
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecC---
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAEL--- 220 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~--- 220 (292)
..+|.||. +.+|.||||.|.|.|.|+++|||+|.|--. .=.|.|.+.+
T Consensus 35 i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----------------------~g~V~I~~~~~t~ 85 (219)
T 2e3u_A 35 EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----------------------TGEVWITSTKETE 85 (219)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----------------------TCEEEEEECTTCC
T ss_pred EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----------------------CCEEEEecCCCCC
Confidence 44677774 578999999999999999999999999521 0135566543
Q ss_pred -chhHHHHHHHHHHHHHHHhcC
Q 022785 221 -PVEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 221 -~~~~~~~rl~~A~e~Ie~LL~ 241 (292)
++ .+++|.++|+.+..
T Consensus 86 d~~-----~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 86 DPL-----AVWKARDIVLAIGR 102 (219)
T ss_dssp SHH-----HHHHHHHHHHHHHT
T ss_pred CHH-----HHHHHHHHHHHHhc
Confidence 43 58999999999884
No 44
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.08 E-value=0.0044 Score=64.39 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=8.9
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
..+|.+|||+|.|+|.|+++||++|-|--.| .|.|.+.+.+ .+++|++.|+
T Consensus 579 ~ki~~vig~gg~~i~~i~~~tg~~idi~ddG------------------------~v~I~~~~~~-----~~~~A~~~i~ 629 (726)
T 4aid_A 579 DKIREVIGSGGKVIREIVATTGAKVDINDDG------------------------VVKVSASDGA-----KIKAAIDWIK 629 (726)
T ss_dssp -----------------------------------------------------------CCSCHH-----HHHHHHHC--
T ss_pred HHHHhhcCCCchhHHHHHHHHCCceeEECCc------------------------eEEEEeCCHH-----HHHHHHHHHH
Confidence 4689999999999999999999999765332 3455555543 4677777777
Q ss_pred HhcCCC
Q 022785 238 DLLKPV 243 (292)
Q Consensus 238 ~LL~pv 243 (292)
.++...
T Consensus 630 ~i~~~~ 635 (726)
T 4aid_A 630 SITDEA 635 (726)
T ss_dssp ------
T ss_pred HHhhhh
Confidence 776543
No 45
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.76 E-value=0.048 Score=43.09 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=45.7
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhh-hCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCc
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAS-TECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELP 221 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~e-TgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~ 221 (292)
.+.+|.||-+ |-+.|||++|.|+|+|+++ ++|+|.+=. +++ -|-|++. +
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------------------~~~-~ItI~G~-~ 76 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE----------------------GED-KITLEGP-T 76 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS----------------------SSC-EEEEEEC-H
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC----------------------CCC-EEEEECC-H
Confidence 4677888844 5678999999999999996 688876532 011 4677775 2
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 022785 222 VEIVDARLMQAREILEDLLK 241 (292)
Q Consensus 222 ~~~~~~rl~~A~e~Ie~LL~ 241 (292)
+ .+.+|.+.|+.++.
T Consensus 77 ~-----~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 77 E-----DVSVAQEQIEGMVK 91 (102)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 2 47788888877764
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.08 E-value=0.071 Score=51.46 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=51.1
Q ss_pred eeeEEEEeccCCCCCCCCccceeeCCCc--chHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEe
Q 022785 141 VKRTIRVDIPVEKYPNFNFVGRLLGPRG--NSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEA 218 (292)
Q Consensus 141 vk~~~Ki~IPv~~yP~~NfvGrIlGPrG--~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a 218 (292)
.+++.++.||- .|.+.|||.+| .++++|.++|||+|.+=-.++-+. .+. ...==|.|++
T Consensus 28 ~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~---------~~~----~ks~~VtItG 88 (376)
T 3n89_A 28 TRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT---------TPD----PFAQQVTITG 88 (376)
T ss_dssp TEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS---------SCC----TTTTEEEEEE
T ss_pred CEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc---------CCc----CCCCeEEEEc
Confidence 45677777773 57788999999 999999999999999954331000 000 0011377887
Q ss_pred cCchhHHHHHHHHHHHHHHHh
Q 022785 219 ELPVEIVDARLMQAREILEDL 239 (292)
Q Consensus 219 ~~~~~~~~~rl~~A~e~Ie~L 239 (292)
.- + .+++|.+.|..+
T Consensus 89 ~~-e-----nVE~AR~~I~~l 103 (376)
T 3n89_A 89 YF-G-----DVDRARMLMRRN 103 (376)
T ss_dssp EH-H-----HHHHHHHHHHHS
T ss_pred CH-H-----HHHHHHHHHHhc
Confidence 42 2 578999999886
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=93.18 E-value=0.12 Score=42.88 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=26.7
Q ss_pred eEEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhC
Q 022785 143 RTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTE 179 (292)
Q Consensus 143 ~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTg 179 (292)
+++++.||- .++|.+||++|.++|+|++++|
T Consensus 4 ~~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 4 FHEQFIVRE------DLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp CEEEEECCG------GGHHHHHCGGGHHHHHHHTSTT
T ss_pred eEEEEEECC------cceeeEECCChhHHHHHHHHHC
Confidence 356777763 5899999999999999999999
No 48
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=89.97 E-value=0.087 Score=44.42 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCccceeeCCCcchHHHHHhhhCceEEEec
Q 022785 157 FNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (292)
Q Consensus 157 ~NfvGrIlGPrG~TlK~le~eTgckI~IRG 186 (292)
-..+|.||||+|..++.||..|++.|.|-=
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~ 93 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVNV 93 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEEC
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEec
Confidence 478999999999999999999999999973
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=89.29 E-value=0.4 Score=42.06 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.3
Q ss_pred EEEEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEec
Q 022785 144 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (292)
Q Consensus 144 ~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRG 186 (292)
+.+|.||- +-+|.|+|-.|.+.|.|++.+||+|.|-.
T Consensus 5 ~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 5 RIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred ceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 34566663 56899999999999999999999999964
No 50
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=88.36 E-value=0.089 Score=54.60 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=0.0
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCC
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD 192 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd 192 (292)
..+|.+|||+|.|++.|.++||++|-|...|.+.-
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I 603 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 603 (723)
T ss_dssp -----------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCccEEE
Confidence 45789999999999999999999999987665543
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=85.86 E-value=0.61 Score=44.95 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=40.9
Q ss_pred ccceeeCCCc--chHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHH
Q 022785 159 FVGRLLGPRG--NSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREIL 236 (292)
Q Consensus 159 fvGrIlGPrG--~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~I 236 (292)
++..|||-+| .++++|.++|||+|..=..++..+. ..+.-.|.|++ ..+ .+..|.+.|
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~--------------~~~~~~ItItG-s~e-----~V~~Ark~I 255 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET--------------RGNIYEIKVVG-NID-----NVLKARRYI 255 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEES-CHH-----HHHHHHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc--------------cCCceEEEEEe-CHH-----HHHHHHHHH
Confidence 5778999999 5569999999999997655432211 01123566776 322 588999999
Q ss_pred HHhc
Q 022785 237 EDLL 240 (292)
Q Consensus 237 e~LL 240 (292)
..+|
T Consensus 256 ~~lL 259 (376)
T 3n89_A 256 MDLL 259 (376)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 9987
No 52
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=71.87 E-value=0.56 Score=48.92 Aligned_cols=31 Identities=19% Similarity=0.586 Sum_probs=10.9
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccC
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRG 188 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrG 188 (292)
..+|.+|||+|.++|.|+++||++|-|-..|
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG 637 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIEDDG 637 (757)
T ss_dssp --------------CTTCCCCCSCC------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecCCc
Confidence 3568899999999999999999999886544
No 53
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=67.87 E-value=2.1 Score=35.85 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.6
Q ss_pred EEeccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEec
Q 022785 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRG 186 (292)
Q Consensus 146 Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRG 186 (292)
++.|=|++. -+|..+|++|..++.++++.|-||-|--
T Consensus 37 r~i~vVk~g----~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 37 RLIFLVSEG----EAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp EEEEEECTT----CHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred EEEEEEeCC----CccccCccCchHHHHHHHHhCCeeEEEE
Confidence 445555554 4999999999999999999999997766
No 54
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=62.65 E-value=30 Score=30.48 Aligned_cols=68 Identities=25% Similarity=0.273 Sum_probs=49.2
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
+.+.|++||+|.-+..|.+.++|+|.| |. | =.|+|.+.++... ..+..|+..|+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------------N--G~IWi~~~~~~~~--~~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------------N--GRIHLECPNEDLE--AIAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------------T--TEEEEECSCHHHH--HHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC---------------------C--CEEEEecCCHHHH--HHHHHHHHHHH
Confidence 578899999999999999899999988 42 1 2688998876543 35677777777
Q ss_pred HhcCCCcchHHHHHH
Q 022785 238 DLLKPVDESHDFYKK 252 (292)
Q Consensus 238 ~LL~pv~e~~d~~Kr 252 (292)
.--- +.+-.|.+|+
T Consensus 211 ~~~~-~~~l~~~v~~ 224 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIK 224 (235)
T ss_dssp HCSC-CTTCHHHHHH
T ss_pred hhhh-hhhHHHHHHH
Confidence 6543 3444455553
No 55
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=35.88 E-value=8.7 Score=32.36 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=37.6
Q ss_pred cceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHH-HHHHHHHH
Q 022785 160 VGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLM-QAREILED 238 (292)
Q Consensus 160 vGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~-~A~e~Ie~ 238 (292)
.|+|||-+|.||+.||--+.--|- + + .+ +.|.+.++++-..-+..|. .|..+.++
T Consensus 44 ~glLIGK~G~TL~ALQyL~~~~vn----------------~------~-~~-~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLFNWIH----------------P------T-YG-YSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHHHHHH----------------H------H-HS-CEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHHHHhh----------------h------c-CC-ceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998741110 0 0 12 8899999888654333333 35556655
Q ss_pred hc
Q 022785 239 LL 240 (292)
Q Consensus 239 LL 240 (292)
..
T Consensus 100 V~ 101 (152)
T 2pt7_G 100 VH 101 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=34.11 E-value=13 Score=33.87 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=33.2
Q ss_pred EEeccCCCCCCCCccceeeCCCcchHHHH-HhhhCceEEEec
Q 022785 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRV-EASTECRVLIRG 186 (292)
Q Consensus 146 Ki~IPv~~yP~~NfvGrIlGPrG~TlK~l-e~eTgckI~IRG 186 (292)
||-|=- ..|+++-||..+|++|..++.| ++..|=||-|--
T Consensus 115 KiAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 115 KIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp EEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEc-CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 444433 3478999999999999999999 888999998876
No 57
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=29.86 E-value=17 Score=34.81 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=33.8
Q ss_pred EEeccCCCCCCCCccceeeCCCcchHHHHHhhh-CceEEEec
Q 022785 146 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEAST-ECRVLIRG 186 (292)
Q Consensus 146 Ki~IPv~~yP~~NfvGrIlGPrG~TlK~le~eT-gckI~IRG 186 (292)
||-|=- ..|+++=||..+|++|..++.|.++. |=||-|--
T Consensus 238 KIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 238 KIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp EEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 444432 45789999999999999999999998 99999877
No 58
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.28 E-value=1.2e+02 Score=26.60 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=48.1
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
+.+.|++|+++.-++.|.+.++|.|.| |. | =.|+|.+.+. . ...+..|+..|+
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~---------------------N--G~IWi~~~~~-~--~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ---------------------N--GLIWVNGDRR-K--VSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT---------------------T--SEEEEESCHH-H--HHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC---------------------C--cEEEEeCCch-h--HHHHHHHHHHHH
Confidence 567799999999999999999999988 41 2 2678886433 1 235667777776
Q ss_pred HhcCCCcchHHHHHHHHHHHHHH
Q 022785 238 DLLKPVDESHDFYKKQQLRELAL 260 (292)
Q Consensus 238 ~LL~pv~e~~d~~Kr~QL~ELA~ 260 (292)
.--. ..+-.|.+| +-|++.-.
T Consensus 198 ~~~~-~~~l~~~v~-~~l~~~~~ 218 (229)
T 2ba0_A 198 QEAH-TEGLTDRVA-EFIKRRKA 218 (229)
T ss_dssp HCSC-CSSHHHHHH-HHHHHHHH
T ss_pred hhhh-hhhHHHHHH-HHHHHhcc
Confidence 5433 223334444 44555433
No 59
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=26.15 E-value=1.1e+02 Score=28.24 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHhhhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 022785 171 LKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILE 237 (292)
Q Consensus 171 lK~le~eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 237 (292)
+.++-+.-|+++.+.||...+.+.| + =||.+.+++.+ .+..++.++.+.++
T Consensus 349 ~~~~~~~p~~~~~~ygk~~~~~~rk---m------------Ghv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 349 AECALSIPNASIHLYSKGAAKPGRK---M------------GHITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp HHHHTTSTTEEEEECCCCSCCTTCE---E------------EEEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCe---e------------EEEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 3445556789999999865554322 1 49999998864 34555666665554
No 60
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=24.38 E-value=77 Score=24.95 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=30.1
Q ss_pred hhCceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchh--HHHHHHHHHHHHHHHhcC
Q 022785 177 STECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVE--IVDARLMQAREILEDLLK 241 (292)
Q Consensus 177 eTgckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~--~~~~rl~~A~e~Ie~LL~ 241 (292)
..|.++.|+|+|--... .+ ...+|+|.+....|.. .- ....+++++++.
T Consensus 47 ~~G~~~rl~G~Gmp~~~--------~~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~ 97 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPK--------YG----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILP 97 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSC
T ss_pred CCCcEEEECCCCCCCCC--------CC----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHcc
Confidence 46899999999953211 01 1367999999887753 11 234566666664
No 61
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=22.66 E-value=29 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=20.6
Q ss_pred ccCCCCCCCCccceeeCCCcchHHHHHhhhCceEEEecc
Q 022785 149 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGR 187 (292)
Q Consensus 149 IPv~~yP~~NfvGrIlGPrG~TlK~le~eTgckI~IRGr 187 (292)
||++.+ |-+|- -..-.-|=-|-..|||||.|+|-
T Consensus 61 IPINs~--FrcVq---EAEEtLLIDIasntgcKIRvqgd 94 (124)
T 2kie_A 61 IPINSH--FRCVQ---EAEETLLIDIASNSGCKIRVQGD 94 (124)
T ss_dssp EECSSS--CEEEE---SSSSCSSCCGGGCSSEEEEEESS
T ss_pred eecccc--hhhhH---hhhhheEEeccCCCCcEEEEecc
Confidence 787763 54542 11122233456679999999994
No 62
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.66 E-value=37 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccC
Q 022785 59 PNAYRLLNQEIMRVTTLLGNASVL 82 (292)
Q Consensus 59 ~h~~rLL~~EI~RV~~~l~~~~~~ 82 (292)
-+..---+|||.|+...|+..+++
T Consensus 31 e~~c~e~eQEieRL~~LLkqHgl~ 54 (58)
T 3a2a_A 31 EFSCSEKEQEIERLNKLLRQHGLL 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334445689999999999988875
No 63
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=21.49 E-value=2.8e+02 Score=21.35 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=30.6
Q ss_pred chHHHHHhhh-CceEEEeccCCCCCcchhhhccCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHHHhc
Q 022785 169 NSLKRVEAST-ECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLL 240 (292)
Q Consensus 169 ~TlK~le~eT-gckI~IRGrGS~kd~~~e~~l~g~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~LL 240 (292)
.++..|+... +..|.||--|+ ..-++|++++.+.+ .++..++...+.|++++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-------------------EP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-------------------EDIVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-------------------SSSEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-------------------ccEEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 3455555553 56888988553 13489999998753 34444444444444443
No 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=20.96 E-value=30 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.4
Q ss_pred ceeeEEEEeccCCCCCCCCccceeeCCCcchHHHH--------HhhhCceEEEe
Q 022785 140 IVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRV--------EASTECRVLIR 185 (292)
Q Consensus 140 ~vk~~~Ki~IPv~~yP~~NfvGrIlGPrG~TlK~l--------e~eTgckI~IR 185 (292)
.+++...|+|.-+. -.|-|||-+|..+|+| |+..||||.+.
T Consensus 237 ~~~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 36677778876554 4588999999999976 55678877763
No 65
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=20.89 E-value=20 Score=32.20 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=21.6
Q ss_pred CccceeeCCCcchHHHHHhhhCceEEE
Q 022785 158 NFVGRLLGPRGNSLKRVEASTECRVLI 184 (292)
Q Consensus 158 NfvGrIlGPrG~TlK~le~eTgckI~I 184 (292)
+.+.|++||++.-+..|.+.++|.|.|
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~v 190 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFV 190 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEE
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE
Confidence 467899999999999999999999988
No 66
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=20.72 E-value=40 Score=28.56 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=17.3
Q ss_pred hHHHHHhhhCceEEEeccC
Q 022785 170 SLKRVEASTECRVLIRGRG 188 (292)
Q Consensus 170 TlK~le~eTgckI~IRGrG 188 (292)
.+|+||++.|+++..|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999964
Done!