BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022787
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2
Length = 1980
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 23/271 (8%)
Query: 10 DVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
++RPLPVL T++YL++ ++D E +DFV++RTR +R+D+ Q++ + +++ E
Sbjct: 690 ELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIE 749
Query: 69 KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEF 128
K +FH+ H + C S +N E +TK L SL +Y+ R+ EAEF
Sbjct: 750 KCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 806
Query: 129 RSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA 188
+ + VLL L+ G+ L + P+ + S E+ FA QA N+ RF V
Sbjct: 807 QGYNVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQ 860
Query: 189 AEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEE-SDVEL 242
+ ASYL C++ Y ++R AL + N Y + +PL + ++L+ + +
Sbjct: 861 S-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVSTQRSTIFPLDGVVRMLLFRDCEEATD 918
Query: 243 FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 273
F +GL V + + ++ F P+G
Sbjct: 919 FLTCHGLT-----VSDGCVELNRSAFLEPEG 944
>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2
Length = 1971
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 23/271 (8%)
Query: 10 DVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
++RP VL T++YL++ ++D E +DFV++RTR +R+D+ Q++ + +++ E
Sbjct: 683 ELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIE 742
Query: 69 KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEF 128
K +FH+ H + C S +N E +TK L SL +Y+ R+ EAEF
Sbjct: 743 KCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 799
Query: 129 RSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA 188
+ + VLL+L+ G+ L + P + S E+ FA QA N+ RF V
Sbjct: 800 QGYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVNFAVQAFAALNSNNFVRFFKLVQ 853
Query: 189 AEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEES-DVEL 242
+ ASYL C++ Y +++R AL + N Y + +PL + ++L+ +S +
Sbjct: 854 S-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVSTQRSTVFPLDGVVRMLLFRDSEEATN 911
Query: 243 FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 273
F N +GL V + + ++ F P+G
Sbjct: 912 FLNYHGLT-----VADGCVELNRSAFLEPEG 937
>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC576.05 PE=1 SV=1
Length = 1024
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 32/267 (11%)
Query: 9 SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
SDVRP PVL+++L+YL+ + P E H FV DRTRS+RQD +QN + A+ E
Sbjct: 160 SDVRPPPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSIRQDFTLQNCRDLDAVACHE 219
Query: 69 KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA-LTSLYNLYEANRSSKPIHEKEAE 127
+I ++H++ H+L C S +EQL K L SL Y+ R K E E
Sbjct: 220 RIARYHILCIHQL---CEKKQFSAQQ--EVEQLRKGILQSLCEFYDDLRKVKIRCPNEPE 274
Query: 128 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGN-------- 179
FRS+ ++ HL + V +S L P I + + A + Q N
Sbjct: 275 FRSYAIITHL-RDPDVVRQSQIL-----PIEIFDDQRVQLALRLSALAQKNNERVGHILP 328
Query: 180 ---------YRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-YPLGH 228
Y RF V + A +YL C++E + +R AL + H +P G
Sbjct: 329 RNTEACPNLYTRFFKLVQSPAVTYLMACLLESHFMSIRKGALKAMRKAFMSAHANFPCGD 388
Query: 229 LSKVLMMEESD-VELFCNAYGLQTCID 254
L ++L + + F YGL+ D
Sbjct: 389 LKRILHFDTVEQAASFSRYYGLEVSDD 415
>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC70.06 PE=3 SV=1
Length = 458
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 42/294 (14%)
Query: 9 SDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 67
SDVRP +L+ T++YL +LD + H FV DRTR+VRQD +Q+ + ++
Sbjct: 126 SDVRPPSILKNTIDYLFKVILD--RYSLREAHAFVRDRTRAVRQDFSVQSSFSQDSVYCH 183
Query: 68 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYN---LYEANRSSKPIHEK 124
E I +FH+IS H+L + + S +EQL+K++ LY LY+ K
Sbjct: 184 ELIARFHIISLHELAHTPNFS-----RQQEIEQLSKSMEILYTLGQLYDYMHLRKEHCTH 238
Query: 125 EAEFRSFYVLLHLDSNGQP-VGESLSLWFRHV-PSPIIKS--KEMWFARQALRYFQMGN- 179
EAEFR++ VLL L G P VG W V PI+K+ K A++ N
Sbjct: 239 EAEFRAYMVLLSL---GDPSVGLDTLSWPDFVFKKPIVKTSLKLYSLAQRNNHTITTSNS 295
Query: 180 -----------------YRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYKL 221
Y RF ++ SYL C+++ ++ +R+ AL + C
Sbjct: 296 ISLSLVSSFNTEATSNLYTRFFKIASSFRVSYLMGCLLDLFVPSIRTGALKAMKKCYLSA 355
Query: 222 HP-YPLGHLSKVLMMEESDVELF--CNAYGLQT-CIDEVGNKLLPTKQTTFCRP 271
H P L K+L D EL C +GL+ I E + ++ ++T P
Sbjct: 356 HSNIPFKDLMKILAATSED-ELVQCCKMHGLKIEYIGEQPSAVVLNRKTVITEP 408
>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3
Length = 1370
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 43/286 (15%)
Query: 8 ASDVRPLP-------VLEETLNYLL-SLLDSTE------HPFEVIHDFVFDRTRSVRQDL 53
A PLP L T++YL+ ++D +E H + H FV+DRTRS+R+++
Sbjct: 247 ADQETPLPHELRNETALHMTMSYLMHEIMDISERQDPQSHMGDWFH-FVWDRTRSIRKEI 305
Query: 54 IMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYE 113
Q + + A+ + E+ +FH+ +L + S S +N E LTK L +L +Y
Sbjct: 306 TQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFDSK---INAENLTKCLQTLKYMYH 362
Query: 114 ANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLSLW-FRHVPSPIIKSKEMWFARQA 171
R KEAEFR + VLL+L D+N LW +P+ + E+ RQA
Sbjct: 363 DLRIKGVPCPKEAEFRGYIVLLNLADAN--------FLWDIGQLPAELQSCPEV---RQA 411
Query: 172 LRYF---QMGNYRRFLSTVA-AEASYLQYCIIEPYIDEVRSLALCCIHNCCY-----KLH 222
++++ Q N+ RF +A + SYL CI+ Y +R L L + ++
Sbjct: 412 IQFYLALQDTNFVRFFQLLADKDTSYLSACILVNYFTRLRVLGLHRLIQAYRSPRKDEVS 471
Query: 223 PYPLGHLSKVL-MMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTT 267
PL +++++L E + F YGLQ I+E G +L T
Sbjct: 472 SLPLSYIAELLSFASEQEAADFVQHYGLQ--INEAGRVVLSRMHTV 515
>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2
Length = 1301
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 27/258 (10%)
Query: 9 SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
SDVRP +L +TL+Y++ L +T E F++DR RS+RQD QN +A++ E
Sbjct: 253 SDVRPPHILVKTLDYIVDNLLTTLPESE---GFLWDRMRSIRQDFTYQNYSGPEAVDCNE 309
Query: 69 KIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEF 128
+IV+ H++ H + S S+ LEQL K+L +L +Y+ RSS EAEF
Sbjct: 310 RIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHKSLITLSEIYDDVRSSGGTCPNEAEF 365
Query: 129 RSFYVLLHL-----DSNGQPVGE--------SLSLWFRHVPSPIIKSKEMWFARQALRYF 175
R++ +L + D N Q + + ++L FR V S ++ + + F
Sbjct: 366 RAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNF 425
Query: 176 QMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCYKLH-PYPLGHLSKVL 233
Y RF + + + L ++ ++ ++R AL + + K H P P +L +L
Sbjct: 426 ----YARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENML 481
Query: 234 MMEE-SDVELFCNAYGLQ 250
+ ++ FCN Y ++
Sbjct: 482 LFNNRQEIIEFCNYYSIE 499
>sp|Q32NW2|LENG8_XENLA Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis
GN=leng8 PE=2 SV=1
Length = 800
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 9 SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVF--DRTRSVRQDLIMQNIVNDKAINM 66
S VRP+PVL+++L + + F+ D+VF ++ +S+RQDL +Q I + + +
Sbjct: 571 STVRPVPVLKKSLTMVKA-------DFKNKQDYVFACEQMKSIRQDLTVQGIRTEFTVEV 623
Query: 67 FE 68
+E
Sbjct: 624 YE 625
>sp|A4QNR8|LENG8_DANRE Leukocyte receptor cluster member 8 homolog OS=Danio rerio GN=leng8
PE=2 SV=1
Length = 839
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 9 SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVF--DRTRSVRQDLIMQNIVNDKAINM 66
S VRP+PVL + SL+ H ++ D+V+ ++ +S+RQDL +Q + D + +
Sbjct: 610 STVRPVPVLRK------SLIAVKAH-WKSNQDYVYACEQMKSIRQDLTVQGVRTDFTVEV 662
Query: 67 FE 68
+E
Sbjct: 663 YE 664
>sp|P37047|CDAR_ECOLI Carbohydrate diacid regulator OS=Escherichia coli (strain K12)
GN=cdaR PE=1 SV=2
Length = 385
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 105 LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 164
L SL ++AN ++P+ L +D+NG + +L+ WFRH P+ SK
Sbjct: 295 LDSLRGDWQANELARPLAR----------LKTMDNNG-LLRRTLAAWFRHNVQPLATSKA 343
Query: 165 MWFARQALRY 174
++ R L Y
Sbjct: 344 LFIHRNTLEY 353
>sp|Q1IYA4|RIMM_DEIGD Ribosome maturation factor RimM OS=Deinococcus geothermalis (strain
DSM 11300) GN=rimM PE=3 SV=1
Length = 178
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 87 SSSISPLHYLNLEQLT-----KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG 141
+ +++P L+L +T +AL L N+Y A+ P+ E + L D+NG
Sbjct: 53 TEALAPGAVLHLAGITSREAAEALRGL-NVYAADADLPPLEEGSYYYHELRGLPVRDANG 111
Query: 142 QPVGESLSLW 151
QP+GE +W
Sbjct: 112 QPLGEVRDVW 121
>sp|A5FC71|UXUA_FLAJ1 Mannonate dehydratase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=uxuA PE=3 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 191 ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 223
+Y+QY IE Y + +R+LALC I CY P
Sbjct: 85 GNYIQY--IENYKESIRNLALCGIKCVCYNFMP 115
>sp|Q1MTP1|THP3_SCHPO THP3 homolog C2A9.11c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC2A9.11c PE=3 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 11 VRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFE 68
VRPLPVL++TL L ++ + ++ D+ +S+RQDL +Q I N+ ++ ++E
Sbjct: 155 VRPLPVLKQTLELLKKKWKEEKN-----YAYICDQFKSLRQDLTVQRIQNEFSVLVYE 207
>sp|Q49ZU9|FENR_STAS1 Ferredoxin--NADP reductase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0530
PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 7 RASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNI-VNDKAIN 65
R +D++ V++E L L + + P IH + D T++ + +I++NI + +
Sbjct: 179 RKADIKGYEVMKEKLEQL----NVKKLPNTHIHQLIGDETQTQIEQVILENIETGEHTVK 234
Query: 66 MFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLY 112
F+ ++ H SS+ + + +++ TS+ LY
Sbjct: 235 SFDDVIISHGFDRENTLLEQSSAKVDMFNEYSIKGFGNTATSIDGLY 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,932,053
Number of Sequences: 539616
Number of extensions: 4035899
Number of successful extensions: 8657
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8631
Number of HSP's gapped (non-prelim): 23
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)