Query 022787
Match_columns 292
No_of_seqs 125 out of 519
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 2.7E-65 9.3E-70 471.4 27.7 259 4-277 1-279 (316)
2 4b0z_A RPN12, 26S proteasome r 100.0 1.8E-29 6.3E-34 223.3 21.0 204 21-261 11-226 (229)
3 4b4t_T 26S proteasome regulato 100.0 9.5E-29 3.2E-33 224.0 13.6 198 38-262 19-236 (274)
4 1rz4_A Eukaryotic translation 98.9 2.1E-08 7.1E-13 87.9 14.8 130 122-261 59-189 (226)
5 3txn_A 26S proteasome regulato 96.4 0.046 1.6E-06 51.3 13.5 148 126-281 220-382 (394)
6 4b4t_O 26S proteasome regulato 94.4 1.1 3.8E-05 41.6 15.1 101 159-261 242-350 (393)
7 3t5x_A PCI domain-containing p 94.1 0.24 8.1E-06 42.0 8.9 99 169-268 84-196 (203)
8 4b4t_R RPN7, 26S proteasome re 94.0 0.15 5E-06 48.1 8.3 94 162-259 283-388 (429)
9 3t5v_B Nuclear mRNA export pro 89.6 4 0.00014 38.8 12.4 73 163-235 293-374 (455)
10 4b4t_Q 26S proteasome regulato 88.0 14 0.00048 32.9 16.2 82 161-245 292-378 (434)
11 3chm_A COP9 signalosome comple 86.6 2.2 7.4E-05 35.1 7.5 79 165-251 59-142 (169)
12 1ufm_A COP9 complex subunit 4; 79.0 3 0.0001 30.1 4.8 38 205-245 15-52 (84)
13 4b4t_P 26S proteasome regulato 78.8 28 0.00096 32.5 12.9 111 163-280 291-417 (445)
14 4b4t_S RPN3, 26S proteasome re 74.7 3.9 0.00013 39.5 5.6 72 169-243 346-422 (523)
15 2jya_A AGR_C_3324P, uncharacte 71.4 2 6.8E-05 32.6 2.1 23 232-254 55-78 (106)
16 3e21_A HFAF1, FAS-associated f 68.5 4.8 0.00016 25.5 3.2 27 226-252 9-36 (45)
17 2lju_A Putative oxidoreductase 53.7 8.9 0.0003 29.0 2.9 23 232-254 63-86 (108)
18 2k9s_A Arabinose operon regula 47.5 48 0.0016 23.8 6.2 46 202-252 52-100 (107)
19 2heo_A Z-DNA binding protein 1 46.4 44 0.0015 22.3 5.4 43 206-251 11-56 (67)
20 3f2g_A Alkylmercury lyase; MER 45.5 46 0.0016 28.3 6.4 49 206-259 23-71 (220)
21 3oio_A Transcriptional regulat 34.8 85 0.0029 22.7 5.9 46 202-252 55-103 (113)
22 3mn2_A Probable ARAC family tr 33.9 1.2E+02 0.0041 21.6 6.5 48 202-252 50-100 (108)
23 3oou_A LIN2118 protein; protei 33.3 81 0.0028 22.6 5.5 46 202-252 53-101 (108)
24 1ng7_A Poliovirus 3A-N, genome 32.4 9.9 0.00034 25.6 0.1 27 225-251 18-45 (60)
25 1z96_A DNA-damage, UBA-domain 32.2 30 0.001 20.4 2.3 25 226-251 8-32 (40)
26 3mkl_A HTH-type transcriptiona 31.7 1.2E+02 0.0041 22.1 6.3 46 202-252 54-102 (120)
27 1nd9_A Translation initiation 31.3 41 0.0014 20.5 3.0 26 224-249 3-28 (49)
28 1gp8_A Protein (scaffolding pr 31.0 59 0.002 19.8 3.4 28 42-69 6-34 (40)
29 3lsg_A Two-component response 30.5 1.1E+02 0.0039 21.5 5.9 46 202-252 51-99 (103)
30 1bl0_A Protein (multiple antib 27.5 1.3E+02 0.0043 22.4 5.9 47 202-253 59-108 (129)
31 3lsg_A Two-component response 27.5 1.2E+02 0.004 21.4 5.4 43 209-252 6-49 (103)
32 2k9s_A Arabinose operon regula 25.6 1.1E+02 0.0039 21.7 5.1 43 209-252 7-50 (107)
33 1v92_A NSFL1 cofactor P47; 3-h 23.7 69 0.0024 19.4 3.0 27 226-252 9-35 (46)
34 3oio_A Transcriptional regulat 23.1 1.2E+02 0.0043 21.7 4.9 42 209-252 11-53 (113)
35 2y75_A HTH-type transcriptiona 21.7 2.2E+02 0.0075 21.0 6.2 43 210-253 14-59 (129)
36 3mn2_A Probable ARAC family tr 21.0 1.5E+02 0.0052 21.0 5.0 42 209-252 6-48 (108)
37 3mkl_A HTH-type transcriptiona 20.5 1.4E+02 0.0049 21.7 4.8 43 208-252 10-52 (120)
38 2eap_A Lymphocyte cytosolic pr 20.5 18 0.00062 26.3 -0.4 44 224-275 22-68 (90)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-65 Score=471.40 Aligned_cols=259 Identities=26% Similarity=0.380 Sum_probs=220.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHcCCCCChhhHHHhhhhhHHHHHhhhhhhhcCChhhHHHHHHHHHHHHHHHhhhhh
Q 022787 4 KEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRS 83 (292)
Q Consensus 4 ~~~~P~~vRP~~vL~kT~~yL~~~~~~~~~~~~~~y~Fi~DRlRaIRQDltvQ~i~~~~~i~v~E~~~Rf~i~~~~~l~~ 83 (292)
++|+|++||||+||++||+||++++... +..+|+|||||||||||||||||+.++++|.|||+|+||||+|.|+||+
T Consensus 1 ~~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~ 77 (316)
T 3t5v_A 1 GSPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVK 77 (316)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999988653 3468999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChhhhcCH
Q 022787 84 SCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 163 (292)
Q Consensus 84 ~~~~~~f~~~~~~n~~ql~qcl~~L~~lY~~~~~~~~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~sp 163 (292)
.. .+| ++++|.+|+++|+++|+++|++.++.|..++||+||+||+||+++++.+ +...+.++|++++++|
T Consensus 78 ~~--~~f--~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p 147 (316)
T 3t5v_A 78 SN--VEF--SLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDK 147 (316)
T ss_dssp SC--CCC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSH
T ss_pred CC--Ccc--chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCH
Confidence 53 245 5799999999999999999999887778899999999999999998753 2345678999999999
Q ss_pred hHHHHHHHHHHHH---------------hCcHHHHHHHHHh-cchHHHHHHHhhhHHHHHHHHHHHHHhhhcC--CCCcC
Q 022787 164 EMWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYP 225 (292)
Q Consensus 164 ~v~~Al~v~~a~~---------------~~Ny~rfFkll~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk--~~~ip 225 (292)
.|++|+++..|+. .|||++||+++++ ++|||++|+|+.|++++|..||++|++ +|+ ..++|
T Consensus 148 ~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~k-ay~~k~~~~p 226 (316)
T 3t5v_A 148 LVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSH-TLNKKHKPIP 226 (316)
T ss_dssp HHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHH-HSCTTCCCEE
T ss_pred HHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCcC
Confidence 9999999999996 4899999998753 389999999999999999999999999 574 24799
Q ss_pred HHHHHHHhcCCc-hHHHHHHHHhCCeecccCCCccc-cccCCCcccCCcCcccc
Q 022787 226 LGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQN 277 (292)
Q Consensus 226 l~~l~~~L~f~~-~e~~~f~~~~Gl~~~~d~~g~~~-l~~k~~~f~~~~~~~~~ 277 (292)
+++|+++|+|++ +|+.+||++|||+++++ +|... ..+.++.|.+++..+.+
T Consensus 227 l~~L~~~L~Fds~ee~~~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~ 279 (316)
T 3t5v_A 227 FIYLENMLLFNNRQEIIEFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKK 279 (316)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcc
Confidence 999999999985 78999999999999753 34432 24567777766655443
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-29 Score=223.33 Aligned_cols=204 Identities=16% Similarity=0.207 Sum_probs=167.5
Q ss_pred HHHHHHHHcCCCCChhhHHHhhhhhHHHHHhhhhhhhcC--------ChhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCh
Q 022787 21 LNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIV--------NDKAINMFEKIVKFHVISHHKLRSSCSSSSISP 92 (292)
Q Consensus 21 ~~yL~~~~~~~~~~~~~~y~Fi~DRlRaIRQDltvQ~i~--------~~~~i~v~E~~~Rf~i~~~~~l~~~~~~~~f~~ 92 (292)
++.|.+.+..+ .|+.+++.++.||+|||.|++. ...|..|||..+|..|.
T Consensus 11 l~~L~~~~~~~------d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~---------------- 68 (229)
T 4b0z_A 11 LNHLADLYDRK------DWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ---------------- 68 (229)
T ss_dssp SHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH----------------
Confidence 35566666653 5899999999999999999984 23689999997766553
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChh--hhcCHhHHHHHH
Q 022787 93 LHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQ 170 (292)
Q Consensus 93 ~~~~n~~ql~qcl~~L~~lY~~~~~~~~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~--i~~sp~v~~Al~ 170 (292)
..|.++|++|+++|+.+|.+.. ..++|+.||.+|+||+.+..++. . .+...+..+|++ +.++|.|++|++
T Consensus 69 --~~D~~~F~~~~~qLk~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~~--~-ef~~~le~l~~~~~~~~~~~I~~al~ 140 (229)
T 4b0z_A 69 --TCDIESFARYASQVIPFYHDSL---VPSSRMGLVTGLNLLYLLSENRI--A-EFHTALESVPDKSLFERDPYVEWVIS 140 (229)
T ss_dssp --TTCHHHHHHHHHHHHHHHSSCC---CCCTTHHHHHHHHHHHHHHTTCH--H-HHHHHHHHCSCTTHHHHCHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHccC---CCCccHHHHHHHHHHHHHHcCCc--h-HHHHHHHhcChHHHhhcCHHHHHHHH
Confidence 2578999999999999998753 24689999999999998865542 2 234445677754 578999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhcch-HHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHHHHHhC
Q 022787 171 ALRYFQMGNYRRFLSTVAAEAS-YLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYG 248 (292)
Q Consensus 171 v~~a~~~~Ny~rfFkll~~~~~-~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~-~e~~~f~~~~G 248 (292)
|.+|++.|||.+||+++ +.+| ...+|+++.+++++|..|+..|.+ +|. ++|+++++++|||++ +|+++||+++|
T Consensus 141 l~~al~~GnY~kff~l~-~~~p~~~~~~~~~~l~~~vR~~~l~~i~k-aY~--~i~l~~~~~~L~f~s~~e~~~f~~~~g 216 (229)
T 4b0z_A 141 LEQNVMEGAFDKVASMI-RSCNFPEFSYFMKIVMSMVRNEIATCAEK-VYS--EIPLSNATSLLYLENTKETEKLAEERG 216 (229)
T ss_dssp HHHHHHTTCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH-hcCccchHHHHHHHHHHHHHHHHHHHHHH-HcC--CCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 99999999999999976 4665 446899999999999999999999 696 799999999999995 67999999999
Q ss_pred CeecccCCCcccc
Q 022787 249 LQTCIDEVGNKLL 261 (292)
Q Consensus 249 l~~~~d~~g~~~l 261 (292)
|++. +|..+.
T Consensus 217 w~i~---dg~i~F 226 (229)
T 4b0z_A 217 WDIR---DGVIYF 226 (229)
T ss_dssp CEEE---TTEEEC
T ss_pred CEEe---CCEEec
Confidence 9994 576654
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.5e-29 Score=223.96 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=138.2
Q ss_pred HHHhhhhhHHHHHhhhhhhhcCCh--------------hhHHHHHHHHHHHHHHHhhhhhcCCCCCCChhhhhcHHHHHH
Q 022787 38 IHDFVFDRTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 103 (292)
Q Consensus 38 ~y~Fi~DRlRaIRQDltvQ~i~~~--------------~~i~v~E~~~Rf~i~~~~~l~~~~~~~~f~~~~~~n~~ql~q 103 (292)
.|+.+.+.|..++++|+.|++-.+ .+.+|||..|| ++-. +.|+++|++
T Consensus 19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~--------~si~----------~~D~~~F~~ 80 (274)
T 4b4t_T 19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGAL--------ASIQ----------TFNFDSFEN 80 (274)
T ss_dssp ------------------------------------------CHHHHHH--------CCSS----------CSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHH--------HHHH----------cCCHHHHHH
Confidence 688999999999999999987321 35689999554 4421 358999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCC---hhhhcCHhHHHHHHHHHHHHhCcH
Q 022787 104 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGNY 180 (292)
Q Consensus 104 cl~~L~~lY~~~~~~~~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~---~~i~~sp~v~~Al~v~~a~~~~Ny 180 (292)
|+++|+.+|.+.+.....++|+.||.||+|||.+..++.+- +..-+..+| +++.++|.|++|++|.+|++.|||
T Consensus 81 ~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~e---fh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY 157 (274)
T 4b4t_T 81 YFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTK---FHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSY 157 (274)
T ss_dssp HHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTH---HHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHH---HHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCH
Confidence 99999999998876555778999999999999875433221 222234566 467889999999999999999999
Q ss_pred HHHHHHHHh--cchHHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHHHHHhCCeecccCCC
Q 022787 181 RRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVG 257 (292)
Q Consensus 181 ~rfFkll~~--~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~-~e~~~f~~~~Gl~~~~d~~g 257 (292)
.+||+++.+ ..+++.+|+|+.+++++|..|+..|.+ +|. ++|++.++++|+|++ +|+.+|++++||++. +|
T Consensus 158 ~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~k-aY~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~---~~ 231 (274)
T 4b4t_T 158 QKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTEL-SYD--FLPLSNIKALLFFNNEKETEKFALERNWPIV---NS 231 (274)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HCS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC---SS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe---CC
Confidence 999997653 235788999999999999999999999 697 799999999999996 679999999999994 35
Q ss_pred ccccc
Q 022787 258 NKLLP 262 (292)
Q Consensus 258 ~~~l~ 262 (292)
..+.+
T Consensus 232 ~v~F~ 236 (274)
T 4b4t_T 232 KVYFN 236 (274)
T ss_dssp CCCC-
T ss_pred EeEEC
Confidence 55543
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.93 E-value=2.1e-08 Score=87.91 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChhhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHhcchHHHHHHHhh
Q 022787 122 HEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEP 201 (292)
Q Consensus 122 ~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~sp~v~~Al~v~~a~~~~Ny~rfFkll~~~~~~L~~cll~~ 201 (292)
.....+..+..+|..|.+... . .+...+--||+.+..+|.|+..+.+.+.+++++|.+|++.+.+. +-+ ...+..
T Consensus 59 ~~~~~~ii~~iLlk~L~~~p~--~-DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~-~~l-~~~i~g 133 (226)
T 1rz4_A 59 AFFQTTVTAQILLKALTNLPH--T-DFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN-MDL-LEGITG 133 (226)
T ss_dssp GGCCHHHHHHHHHHHHHTTTS--T-HHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT-CHH-HHTSTT
T ss_pred cccchhHHHHHHHHHHHcCCH--H-HHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-hhH-HHHHhH
Confidence 345678899888777654432 1 12222334799998999999999999999999999999976432 211 123344
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcC-CchHHHHHHHHhCCeecccCCCcccc
Q 022787 202 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM-EESDVELFCNAYGLQTCIDEVGNKLL 261 (292)
Q Consensus 202 ~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f-~~~e~~~f~~~~Gl~~~~d~~g~~~l 261 (292)
+.+.+|......+.+ +|. .||++.++++||+ ++.++.+||++.||++ |++|.++.
T Consensus 134 f~dsIR~~I~~~i~~-aY~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~ 189 (226)
T 1rz4_A 134 FEDSVRKFICHVVGI-TYQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHHHHH-HCS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred HHHHHHHHHHHHHHH-HHh--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence 677899999999998 697 7999999999975 4678999999999999 45676654
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.43 E-value=0.046 Score=51.31 Aligned_cols=148 Identities=13% Similarity=0.145 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhcCCCC-chhhhHHHHhhhCChhhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh------cchHHHHHH
Q 022787 126 AEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCI 198 (292)
Q Consensus 126 ~EF~aY~iL~~l~~~~~-~~~~~l~~~l~~l~~~i~~sp~v~~Al~v~~a~~~~Ny~rfFkll~~------~~~~L~~cl 198 (292)
..+.-|.+|..|-.... .+...+. ...... ..+|.+....++..|+..+++..|++.+.. .-+++..+
T Consensus 220 ~~~lkYlvL~aLl~~~r~el~~~l~---~~~~~~-~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h- 294 (394)
T 3txn_A 220 LTSLKYMLLCKIMLGQSDDVNQLVS---GKLAIT-YSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH- 294 (394)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHH---SHHHHT-TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhc---cccccc-cCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH-
Confidence 45667777777644332 2222111 000011 268999999999999999999999998764 23444332
Q ss_pred HhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHH----HHhCCeecccC-CCccccc---cCCCcccC
Q 022787 199 IEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFC----NAYGLQTCIDE-VGNKLLP---TKQTTFCR 270 (292)
Q Consensus 199 l~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~----~~~Gl~~~~d~-~g~~~l~---~k~~~f~~ 270 (292)
.......||.++|..+.+ .|+ .|+++.+++.|+.+.++++..+ ..--+.-.-|. +|-+... .+.+.|..
T Consensus 295 ~~~L~~~Ir~~~L~~i~~-pYs--rIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ 371 (394)
T 3txn_A 295 LGTLYDTMLEQNLCRIIE-PYS--RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYER 371 (394)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCS--EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC---------
T ss_pred HHHHHHHHHHHHHHHHhH-hhc--eeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHH
Confidence 344566799999999998 687 6999999999999866554443 33333322243 4544331 13445555
Q ss_pred CcCcccccchh
Q 022787 271 PKGGLQNYSFL 281 (292)
Q Consensus 271 ~~~~~~~~~~~ 281 (292)
.-+.++.|+-.
T Consensus 372 ale~l~~ls~v 382 (394)
T 3txn_A 372 VLETIQSMGKV 382 (394)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=1.1 Score=41.62 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=66.8
Q ss_pred hhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh---cchHHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcC
Q 022787 159 IIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM 235 (292)
Q Consensus 159 i~~sp~v~~Al~v~~a~~~~Ny~rfFkll~~---~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f 235 (292)
+.++|....-.++..++..||+..|...+.. ..|.+... ......++|..+|..++. +.....+|.+.+++.|+.
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~-~~~l~~kirll~l~~l~~-~~~~~~i~f~~ia~~l~i 319 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH-ESFLRQKICLMTLIETVF-VKNIRMLSFEDISKATHL 319 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH-HHHHHHHHHHHHHHHHHC-SSSCCCEEHHHHHHHHTC
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh-HHHHHHHHHHHHHHHHhc-cCCCCcCcHHHHHHHhCc
Confidence 4456777778899999999999999885432 34444332 222356789999888764 222237999999999999
Q ss_pred CchHHHHH---HHHhCCeec-ccC-CCcccc
Q 022787 236 EESDVELF---CNAYGLQTC-IDE-VGNKLL 261 (292)
Q Consensus 236 ~~~e~~~f---~~~~Gl~~~-~d~-~g~~~l 261 (292)
+.+|++.+ +-..|+.-. -|. +|.+.+
T Consensus 320 ~~~evE~lli~aI~~glI~GkIDQv~~~v~v 350 (393)
T 4b4t_O 320 PKDNVEHLVMRAISLGLLKGSIDQVNELVTI 350 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSSSCEETTTTEECC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCEEEE
Confidence 87665555 334566432 233 454444
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=94.05 E-value=0.24 Score=42.03 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=61.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcchHHHHHHHhhhHHHHHHHHHHHHHhhhc---CCCCcCHHHHHHHhcCC------chH
Q 022787 169 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESD 239 (292)
Q Consensus 169 l~v~~a~~~~Ny~rfFkll~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~y---k~~~ipl~~l~~~L~f~------~~e 239 (292)
..+.+|+..||..+|=+.+.+....+..+=+..-+.++|..+++.+.+..+ +...+|++.++..|.++ .+|
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~e 163 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDE 163 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHH
Confidence 378899999999999998875444433332223356788888877766321 22379999999999763 244
Q ss_pred HHHH---HHHhCCee-c-ccCCCccccccCCCcc
Q 022787 240 VELF---CNAYGLQT-C-IDEVGNKLLPTKQTTF 268 (292)
Q Consensus 240 ~~~f---~~~~Gl~~-~-~d~~g~~~l~~k~~~f 268 (292)
++.. +-.-|..- . ++++|.+++ .|+.+|
T Consensus 164 vE~ila~lI~~G~Ikg~I~~~~~~lVl-sk~~pF 196 (203)
T 3t5x_A 164 VQCILANLIYMGHVKGYISHQHQKLVV-SKQNPF 196 (203)
T ss_dssp HHHHHHHHHHHTSSCEEEETTTTEEEE-CSSCSS
T ss_pred HHHHHHHHHHcCceEEEEcccccEEEE-CCCCCC
Confidence 4333 44456532 2 244554444 465565
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.15 Score=48.13 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=67.6
Q ss_pred CHhHHHHHHHHHHHHhCcHHHHHHHHHh-------cchHHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhc
Q 022787 162 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 234 (292)
Q Consensus 162 sp~v~~Al~v~~a~~~~Ny~rfFkll~~-------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~ 234 (292)
.|.++...++..++..++|..||..+.. ..+++..+ ...+...||.+++..+.+ .|+ .|.++.+++.||
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~ 358 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG 358 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence 3667777888999999999999986432 12344433 344577799999999998 698 799999999999
Q ss_pred CCchH----HHHHHHHhCCeecccC-CCcc
Q 022787 235 MEESD----VELFCNAYGLQTCIDE-VGNK 259 (292)
Q Consensus 235 f~~~e----~~~f~~~~Gl~~~~d~-~g~~ 259 (292)
.+.++ +..+...--+...-|. +|-+
T Consensus 359 ~s~~~~E~~L~~lI~~g~l~akID~~~giv 388 (429)
T 4b4t_R 359 VSVAFLDNDLGKFIPNKQLNCVIDRVNGIV 388 (429)
T ss_dssp SCHHHHHHHHHHHHHHTSSCEEEETTTTEE
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEcCCCCEE
Confidence 99654 4555555555554454 4443
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=89.60 E-value=4 Score=38.80 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=50.0
Q ss_pred HhHHH-HHHHHHHHHhCcHHHHHHHHHhcchHHHHH-HHhhhHHHHHHHHHHHHHhh-------hcCCCCcCHHHHHHHh
Q 022787 163 KEMWF-ARQALRYFQMGNYRRFLSTVAAEASYLQYC-IIEPYIDEVRSLALCCIHNC-------CYKLHPYPLGHLSKVL 233 (292)
Q Consensus 163 p~v~~-Al~v~~a~~~~Ny~rfFkll~~~~~~L~~c-ll~~~~~~vR~~aL~~i~~a-------~yk~~~ipl~~l~~~L 233 (292)
|.+.- =..+.+|+..||..+|=+.+.+...++.++ ++...+.++|..+++.+.+. +|++..||++.++..|
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL 372 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVL 372 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHH
Confidence 55543 467999999999999999887543333332 32444566777666555442 3555689999999999
Q ss_pred cC
Q 022787 234 MM 235 (292)
Q Consensus 234 ~f 235 (292)
.+
T Consensus 373 ~~ 374 (455)
T 3t5v_B 373 QL 374 (455)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 10
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.04 E-value=14 Score=32.90 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=60.6
Q ss_pred cCHhHHHHHHHHHHHHhCcHHHHHHHHHhc-----chHHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcC
Q 022787 161 KSKEMWFARQALRYFQMGNYRRFLSTVAAE-----ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM 235 (292)
Q Consensus 161 ~sp~v~~Al~v~~a~~~~Ny~rfFkll~~~-----~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f 235 (292)
..+.+.....+..++..+++..|.+.+... ......-........+|..++..+.+ .|. .++++.+++.|+.
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~y~--~i~l~~la~~l~~ 368 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE-PFE--CVEISHISKIIGL 368 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS-SCS--CEEHHHHHHHHTC
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH-HHH--hcCHHHHHHHhCc
Confidence 457777777888999999999998876431 12222333455566788999999987 687 6999999999999
Q ss_pred CchHHHHHHH
Q 022787 236 EESDVELFCN 245 (292)
Q Consensus 236 ~~~e~~~f~~ 245 (292)
+.++++..+.
T Consensus 369 ~~~~~E~~l~ 378 (434)
T 4b4t_Q 369 DTQQVEGKLS 378 (434)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9776655544
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=86.63 E-value=2.2 Score=35.07 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHhcchHHHHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCC-chHHHHH
Q 022787 165 MWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELF 243 (292)
Q Consensus 165 v~~Al~v~~a~~~~Ny~rfFkll~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~-~~e~~~f 243 (292)
-....++...+..|+|..|-. ..+..|-|. ..-..+||.-+|-.++. ..+ .+|.+.+++.|+.+ ..|.+.+
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~-~~~~~p~L~----~~~~~KlrlLtL~sLa~-~~~--~lsy~~I~~~l~i~~~~evE~l 130 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKC-NATRLPHLS----PDQILKLKQLTVLTLAE-SNK--VLPYDTLMVELDVSNVRELEDF 130 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHH-HGGGSCCCC----HHHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHhcCCHHHHHH-hHHhCcchH----HHHHHHHHHHHHHHHHH-hCC--CcCHHHHHHHhCCCCHHHHHHH
Confidence 455678999999999999887 344556554 33345699999999875 333 79999999999999 5566665
Q ss_pred HH----HhCCee
Q 022787 244 CN----AYGLQT 251 (292)
Q Consensus 244 ~~----~~Gl~~ 251 (292)
+- +.|+.-
T Consensus 131 vI~~ai~~gLI~ 142 (169)
T 3chm_A 131 LINECMYAGIVR 142 (169)
T ss_dssp HHHTHHHHTSEE
T ss_pred HHHHHHHhCCeE
Confidence 44 468754
No 12
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=79.02 E-value=3 Score=30.06 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHH
Q 022787 205 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCN 245 (292)
Q Consensus 205 ~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~ 245 (292)
++...+|+.+.+ .|. .+.++.|+++|+++.++++.++.
T Consensus 15 ~v~E~nl~~is~-~Y~--~Isl~~La~ll~ls~~~vE~~ls 52 (84)
T 1ufm_A 15 AVIEHNLLSASK-LYN--NITFEELGALLEIPAAKAEKIAS 52 (84)
T ss_dssp HHHHHHHHHHHH-SCS--EEEHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcC--eeeHHHHHHHHCcCHHHHHHHHH
Confidence 355667778887 688 79999999999999766555543
No 13
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.80 E-value=28 Score=32.50 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHHHHhCcHHHHHHHHHhcc------hHH-----HHHHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHH
Q 022787 163 KEMWFARQALRYFQMGNYRRFLSTVAAEA------SYL-----QYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSK 231 (292)
Q Consensus 163 p~v~~Al~v~~a~~~~Ny~rfFkll~~~~------~~L-----~~cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~ 231 (292)
+.+..--.+.+++..++..+|-..+..-. +.. ..--.......++...|..+.+ .|+ .|+++.|++
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys--~I~l~~la~ 367 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE-YYS--RITLLRLNE 367 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEE--EEEHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH-Hhc--eeeHHHHHH
Confidence 45555556788888887776665443211 110 0111233445678888999988 688 699999999
Q ss_pred HhcCCchHHHHHHHHh---C-Ceeccc-CCCccccccCCCcccCCcCcccccch
Q 022787 232 VLMMEESDVELFCNAY---G-LQTCID-EVGNKLLPTKQTTFCRPKGGLQNYSF 280 (292)
Q Consensus 232 ~L~f~~~e~~~f~~~~---G-l~~~~d-~~g~~~l~~k~~~f~~~~~~~~~~~~ 280 (292)
+|+++.++++.++... | +.-.-| .+|-+. |.+. ..+.+.+..|+-
T Consensus 368 lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~--F~~~--~~~~~~l~~W~~ 417 (445)
T 4b4t_P 368 LLDLTESQTETYISDLVNQGIIYAKVNRPAKIVN--FEKP--KNSSQLLNEWSH 417 (445)
T ss_dssp HHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEE--C-----------------
T ss_pred HhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEE--ECCC--CChHHHHHHHHH
Confidence 9999987776665432 3 222224 355332 2222 234556667754
No 14
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.66 E-value=3.9 Score=39.52 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcchHHHH----HHHhhhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHH
Q 022787 169 RQALRYFQMGNYRRFLSTVAAEASYLQY----CIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELF 243 (292)
Q Consensus 169 l~v~~a~~~~Ny~rfFkll~~~~~~L~~----cll~~~~~~vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~-~e~~~f 243 (292)
..+.+|+..||...|=..+.+......+ -++.+-...+....++.+++ +|. .||+.+++..|++++ +|++..
T Consensus 346 ~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~-~Ys--rIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 346 YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISL-TYK--KISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCC-CSS--EECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHH-HHh--cccHHHHHHHhCCCCHHHHHHH
Confidence 4688999999999998877543222222 23444444566677888877 586 699999999999974 445444
No 15
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=71.45 E-value=2 Score=32.55 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.4
Q ss_pred HhcCCc-hHHHHHHHHhCCeeccc
Q 022787 232 VLMMEE-SDVELFCNAYGLQTCID 254 (292)
Q Consensus 232 ~L~f~~-~e~~~f~~~~Gl~~~~d 254 (292)
.|.|++ +||++||+.+|+.....
T Consensus 55 ~L~F~skE~AiayAek~G~~y~V~ 78 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGIEYRVI 78 (106)
T ss_dssp EEEESSHHHHHHHHHHHTCEEEEC
T ss_pred eEecCCHHHHHHHHHHcCCEEEEe
Confidence 367886 67999999999987643
No 16
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=68.47 E-value=4.8 Score=25.54 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCc-hHHHHHHHHhCCeec
Q 022787 226 LGHLSKVLMMEE-SDVELFCNAYGLQTC 252 (292)
Q Consensus 226 l~~l~~~L~f~~-~e~~~f~~~~Gl~~~ 252 (292)
+..++++-|.++ ++|+.+++++||.+.
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHH
Confidence 567888999998 889999999999874
No 17
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=53.72 E-value=8.9 Score=29.05 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=18.5
Q ss_pred HhcCCc-hHHHHHHHHhCCeeccc
Q 022787 232 VLMMEE-SDVELFCNAYGLQTCID 254 (292)
Q Consensus 232 ~L~f~~-~e~~~f~~~~Gl~~~~d 254 (292)
-|.|++ +||+.||+.+|+.....
T Consensus 63 ~L~F~skE~AiayAek~G~~y~V~ 86 (108)
T 2lju_A 63 CLSFTTRELAIAYAVAHKIDYTVL 86 (108)
T ss_dssp CEEESSHHHHHHHHHHTTCEEEEE
T ss_pred eEecCCHHHHHHHHHHcCCEEEEe
Confidence 377886 67999999999987643
No 18
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=47.46 E-value=48 Score=23.84 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=32.9
Q ss_pred hHHHHHH-HHHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRS-LALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~-~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|. .|.+.+.. + ..|+..++..+||.+.. ...|-+.+|.+..
T Consensus 52 ~~~~~Rl~~A~~lL~~----~-~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (107)
T 2k9s_A 52 WREDQRISQAKLLLST----T-RMPIATVGRNVGFDDQLYFSRVFKKCTGASPS 100 (107)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----C-CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 3455665 44555543 1 59999999999999754 6888888898764
No 19
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.40 E-value=44 Score=22.28 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchH---HHHHHHHhCCee
Q 022787 206 VRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD---VELFCNAYGLQT 251 (292)
Q Consensus 206 vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e---~~~f~~~~Gl~~ 251 (292)
+|.+.|..+... +.++++.+|++.|+.+... ..+-+++.|+..
T Consensus 11 ~~~~IL~~L~~~---~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDD---GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHH---CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 577888888642 2379999999999999643 577788889954
No 20
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=45.48 E-value=46 Score=28.28 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHHhCCeecccCCCcc
Q 022787 206 VRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNK 259 (292)
Q Consensus 206 vR~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~~~Gl~~~~d~~g~~ 259 (292)
++...|+.+.+ +.+++++.|++.+|.+.+++...+++.+.... |++|+.
T Consensus 23 ~~~~llr~la~----Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~-D~~G~I 71 (220)
T 3f2g_A 23 LLVPLLRELAK----GRPVSRTTLAGILDWPAERVAAVLEQATSTEY-DKDGNI 71 (220)
T ss_dssp HHHHHHHHHTT----TSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEE-CTTSCE
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEE-CCCCCE
Confidence 55666777653 55899999999999999999999998875443 567875
No 21
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.77 E-value=85 Score=22.67 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=32.9
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|.. |.+.+.. + ..|+.+++..+||.+.. ...|=+.+|.+..
T Consensus 55 ~~~~~Rl~~A~~lL~~----~-~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 55 YYLELRLNRARQLLQQ----T-SKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----C-CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 44456664 4444432 1 58999999999999754 6888888999764
No 22
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=33.95 E-value=1.2e+02 Score=21.58 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=32.7
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|.. |.+.+..+ ...+|+.+++..+||.+.. ...|=+.+|.+..
T Consensus 50 ~~~~~Rl~~A~~lL~~~---~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (108)
T 3mn2_A 50 FAKRVRLQHAHNLLSDG---ATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPS 100 (108)
T ss_dssp HHHHHHHHHHHHHHHSS---SSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHcC---CCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcChH
Confidence 34456653 45555431 1138999999999999754 6788888898764
No 23
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.33 E-value=81 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=32.0
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|.. |...+.. + ..|+..++..+||++.. ...|=+.+|.+..
T Consensus 53 ~~~~~Rl~~A~~lL~~----~-~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 101 (108)
T 3oou_A 53 YLNRYRVNYAKEELLQ----T-KDNLTIIAGKSGYTDMAYFYRQFKKHTGETPN 101 (108)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----C-CCCHHHHHHHcCCCChHHHHHHHHHHhCcCHH
Confidence 34445653 4444432 1 58999999999998743 6888888898753
No 24
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=32.35 E-value=9.9 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.6
Q ss_pred CHHHHHHHhcCC-chHHHHHHHHhCCee
Q 022787 225 PLGHLSKVLMME-ESDVELFCNAYGLQT 251 (292)
Q Consensus 225 pl~~l~~~L~f~-~~e~~~f~~~~Gl~~ 251 (292)
|-..++++|.-. ++|.+++|+..||.+
T Consensus 18 pP~aI~DLLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 18 PPECINDLLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp SSTTTHHHHHHHCCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHCCcee
Confidence 445678888755 478999999999998
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=32.18 E-value=30 Score=20.38 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHhCCee
Q 022787 226 LGHLSKVLMMEESDVELFCNAYGLQT 251 (292)
Q Consensus 226 l~~l~~~L~f~~~e~~~f~~~~Gl~~ 251 (292)
+..|.++ ||+.++++..+...|..+
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~ 32 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDL 32 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCH
Confidence 5567776 998888888888877644
No 26
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=31.70 E-value=1.2e+02 Score=22.11 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=32.6
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|.. |.+.+. ....|+..++..+||.+.. ...|=+.+|++..
T Consensus 54 ~~~~~Rl~~A~~lL~-----~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 54 LLTECRMQRALQLIV-----IHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHHHHHHHHHHHT-----STTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHH-----cCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 45556664 444442 1258999999999999754 6788888899774
No 27
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=31.31 E-value=41 Score=20.51 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=23.6
Q ss_pred cCHHHHHHHhcCCchHHHHHHHHhCC
Q 022787 224 YPLGHLSKVLMMEESDVELFCNAYGL 249 (292)
Q Consensus 224 ipl~~l~~~L~f~~~e~~~f~~~~Gl 249 (292)
+.+..+++.||.+..++.++++..|+
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 55778999999999999999999999
No 28
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.02 E-value=59 Score=19.76 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=20.8
Q ss_pred hhhhHHHHHhhhhhhhcCCh-hhHHHHHH
Q 022787 42 VFDRTRSVRQDLIMQNIVND-KAINMFEK 69 (292)
Q Consensus 42 i~DRlRaIRQDltvQ~i~~~-~~i~v~E~ 69 (292)
..|+.++|+|-+-+-.-+++ .++..+|.
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56889999988877766665 56777775
No 29
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.51 E-value=1.1e+02 Score=21.46 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=31.7
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 252 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~ 252 (292)
|+..+|.. |...+.. + ..|+.+++..+||.+.. ...|=+.+|.+..
T Consensus 51 ~~~~~Rl~~A~~lL~~----~-~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP~ 99 (103)
T 3lsg_A 51 YLLQKRMEKAKLLLLT----T-ELKNYEIAEQVGFEDVNYFITKFKKYYQITPK 99 (103)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHC----C-CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 34455664 4444432 1 58999999999998743 6778888898753
No 30
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.52 E-value=1.3e+02 Score=22.36 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.0
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeecc
Q 022787 202 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTCI 253 (292)
Q Consensus 202 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e--~~~f~~~~Gl~~~~ 253 (292)
|+..+|.. |...+..+ ..|+.+++..+||.+.. ...|-+.+|.+...
T Consensus 59 ~l~~~Rl~~A~~lL~~~-----~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~ 108 (129)
T 1bl0_A 59 YIRSRKMTEIAQKLKES-----NEPILYLAERYGFESQQTLTRTFKNYFDVPPHK 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHcC-----CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHHH
Confidence 45556663 45555431 48999999999999754 68888899998753
No 31
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.51 E-value=1.2e+02 Score=21.41 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHH-hCCeec
Q 022787 209 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNA-YGLQTC 252 (292)
Q Consensus 209 ~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~~-~Gl~~~ 252 (292)
++...|.. .+...+++++++++.+|++.......++. .|.++.
T Consensus 6 ~i~~~i~~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~ 49 (103)
T 3lsg_A 6 LIQNIIEE-SYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQ 49 (103)
T ss_dssp HHHHHHHH-HTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHH-HccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH
Confidence 34455544 45444799999999999997765444444 477664
No 32
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.61 E-value=1.1e+02 Score=21.70 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHH-HhCCeec
Q 022787 209 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCN-AYGLQTC 252 (292)
Q Consensus 209 ~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~-~~Gl~~~ 252 (292)
+++..|.. .+...+++++++++.+|++.......++ ..|.++.
T Consensus 7 ~~~~~i~~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~ 50 (107)
T 2k9s_A 7 EACQYISD-HLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVL 50 (107)
T ss_dssp HHHHHHHH-TSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHH-HhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHH
Confidence 45566654 4542479999999999998776544444 4577764
No 33
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=23.73 E-value=69 Score=19.43 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHhCCeec
Q 022787 226 LGHLSKVLMMEESDVELFCNAYGLQTC 252 (292)
Q Consensus 226 l~~l~~~L~f~~~e~~~f~~~~Gl~~~ 252 (292)
+..+..+-|.++..|..+++.+||.+.
T Consensus 9 i~~F~~iTg~~~~~A~~~L~~~~wdle 35 (46)
T 1v92_A 9 LREFVAVTGAEEDRARFFLESAGWDLQ 35 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCSH
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHH
Confidence 555677777777779999999999874
No 34
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.08 E-value=1.2e+02 Score=21.72 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHH-HhCCeec
Q 022787 209 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCN-AYGLQTC 252 (292)
Q Consensus 209 ~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~-~~Gl~~~ 252 (292)
+++..|.. .+. .++++++|++.+|++.......++ ..|.++.
T Consensus 11 ~~~~~i~~-~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~ 53 (113)
T 3oio_A 11 EAVSLMEA-NIE-EPLSTDDIAYYVGVSRRQLERLFKQYLGTVPS 53 (113)
T ss_dssp HHHHHHHT-CSS-SCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHh-hhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH
Confidence 45556654 454 369999999999998766544444 3477653
No 35
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.70 E-value=2.2e+02 Score=20.95 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHHhhhcCCCCcCHHHHHHHhcCCch---HHHHHHHHhCCeecc
Q 022787 210 ALCCIHNCCYKLHPYPLGHLSKVLMMEES---DVELFCNAYGLQTCI 253 (292)
Q Consensus 210 aL~~i~~a~yk~~~ipl~~l~~~L~f~~~---e~~~f~~~~Gl~~~~ 253 (292)
+|..++. .+.+.++++..|++.++.+.. ....-++..|+....
T Consensus 14 iL~~la~-~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 14 IMIELAK-KHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHH-TTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHh-CCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 3444443 232357999999999999963 577788899996543
No 36
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.04 E-value=1.5e+02 Score=20.95 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHH-HhCCeec
Q 022787 209 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCN-AYGLQTC 252 (292)
Q Consensus 209 ~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~-~~Gl~~~ 252 (292)
+++..|.. .+. .+++++++++.+|++.......++ ..|.++.
T Consensus 6 ~~~~~i~~-~~~-~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~ 48 (108)
T 3mn2_A 6 QVEEYIEA-NWM-RPITIEKLTALTGISSRGIFKAFQRSRGYSPM 48 (108)
T ss_dssp HHHHHHHH-HTT-SCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHH-ccc-CCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHH
Confidence 44555554 354 369999999999999776544444 4487764
No 37
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.48 E-value=1.4e+02 Score=21.66 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHHhCCeec
Q 022787 208 SLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTC 252 (292)
Q Consensus 208 ~~aL~~i~~a~yk~~~ipl~~l~~~L~f~~~e~~~f~~~~Gl~~~ 252 (292)
.+++..|.. .+. .++++++|++.+|++.......++.+|.++.
T Consensus 10 ~~~~~~i~~-~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~ 52 (120)
T 3mkl_A 10 TRVCTVINN-NIA-HEWTLARIASELLMSPSLLKKKLREEETSYS 52 (120)
T ss_dssp HHHHHHHHT-STT-SCCCHHHHHHHTTCCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHH-hcc-CCCCHHHHHHHHCcCHHHHHHHHHHcCCCHH
Confidence 345556654 344 3799999999999998776555666687763
No 38
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=18 Score=26.28 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=26.8
Q ss_pred cCHHHHHHHh---cCCchHHHHHHHHhCCeecccCCCccccccCCCcccCCcCcc
Q 022787 224 YPLGHLSKVL---MMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGL 275 (292)
Q Consensus 224 ipl~~l~~~L---~f~~~e~~~f~~~~Gl~~~~d~~g~~~l~~k~~~f~~~~~~~ 275 (292)
.+.+.+++|| ||.+ |..+|+.|.+ +|..++..+...|..|..-.
T Consensus 22 Wsp~~VadWLkk~g~~~--cd~lv~Kh~I------DG~~lL~LtE~Dlrk~Pkl~ 68 (90)
T 2eap_A 22 WDPDSLADYFKKLNYKD--CEKAVKKYHI------DGARFLNLTENDIQKFPKLR 68 (90)
T ss_dssp CCTTTHHHHHHHTTCHH--HHHHHHHTTC------CHHHHHTCCHHHHTTSCTTT
T ss_pred cCHHHHHHHHHHcCCch--HHHHHHHhcc------CchhhhcccHHHhccCCccc
Confidence 4555677777 6654 6666766652 47666666666666554433
Done!