BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022791
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD
Sbjct: 179 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 238
Query: 61 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 239 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 298
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 299 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 358
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+
Sbjct: 359 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 418
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 419 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD
Sbjct: 178 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSD 237
Query: 61 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 297
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 298 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+
Sbjct: 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/289 (63%), Positives = 228/289 (78%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLV+Q++DDEK +WK+L++E+ ENAKDIIACGFDV KTFIFSD
Sbjct: 182 IFTKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSD 241
Query: 61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
DY+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 242 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 301
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
G+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 302 HGQADIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 361
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+
Sbjct: 362 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 421
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L VL LV HQ R VTDEMV FM R L
Sbjct: 422 KDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/289 (62%), Positives = 230/289 (79%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD
Sbjct: 183 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSD 242
Query: 61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
DY+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 243 LDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 302
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 303 RDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 362
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK K+NK+AFSGG+++VE HR+ G N +VD+ YL+FFLEDD +LE I+
Sbjct: 363 SIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 422
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
++Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 423 RDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/289 (63%), Positives = 229/289 (79%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ++DDEK +WK+L++E++ ENAKDIIACGFDV KTFIFSD
Sbjct: 182 IFTKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSD 241
Query: 61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
+Y+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F
Sbjct: 242 LEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+
Sbjct: 362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIR 421
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L VL L+ HQ R AVT+E V FMA R L
Sbjct: 422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/289 (62%), Positives = 228/289 (78%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ++DDEK +WK+L++E++ ENAKDIIACGFD+ KTFIFSD
Sbjct: 182 IFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSD 241
Query: 61 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
+Y+G + FY+N+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F
Sbjct: 242 LEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIF 301
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 302 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNS 361
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+
Sbjct: 362 SIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIR 421
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L VL L+ HQ R AVT+E V FM R L
Sbjct: 422 KDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 350 bits (897), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 163/290 (56%), Positives = 214/290 (73%), Gaps = 5/290 (1%)
Query: 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
FTKYLQDAF VPLV+Q+T+DEK +WK++++EES + N KDIIA GFD+ KTFIFS+
Sbjct: 110 FTKYLQDAFNVPLVVQMTNDEKFLWKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNL 169
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
+Y+ Y N++K+A+CV N++ IFGF D IGK +FPPVQA P FP SFPH+F
Sbjct: 170 EYIH-HLYPNVLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLN 228
Query: 122 D----HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 177
D ++RCLIPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG KMSASD N
Sbjct: 229 DPEIKNIRCLIPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTN 288
Query: 178 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 237
SA+Y++D+ +K+KI K+AFSGG + E K GA+L VDI +YL+F LEDD +L+ I
Sbjct: 289 SAVYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDI 348
Query: 238 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
Y G M+TGE+KQ L ++ +++ RH+ ARA +TDE++ FM++R L
Sbjct: 349 AHRYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 338 bits (867), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/283 (57%), Positives = 210/283 (74%), Gaps = 1/283 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
MF K+LQD F+VPLVIQLTDDEK ++K +S+E+ QR ARENAKDIIA GFD KTFIF
Sbjct: 105 MFCKWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFM 164
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
+ YVGGAFY+N+V++AKC+T N+ FGFT D IGK+ F +QA PSF SSFPH+F+
Sbjct: 165 NSTYVGGAFYQNVVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFN 224
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
G + CLIPCAIDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG KMSAS +SA
Sbjct: 225 GAKDIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSA 284
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
I++TD+ IKNKIN++AFSGG ++E+HR+ G N +VD+ +YLSFFL+DD +L+ +
Sbjct: 285 IFMTDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYN 344
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 282
Y AG + TGE+K K+L + V Q AR+ V + +D FM
Sbjct: 345 TYKAGTLSTGEMKGECIKLLQQFVSDFQAARSKVDEATLDMFM 387
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/288 (53%), Positives = 203/288 (70%), Gaps = 1/288 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFS
Sbjct: 125 VFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFS 184
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
D Y+GGAFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++
Sbjct: 185 DLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLG 244
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +A
Sbjct: 245 LPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTA 304
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
I++TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+
Sbjct: 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYD 364
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
+Y +G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 365 KYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 258 bits (659), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 190/284 (66%), Gaps = 4/284 (1%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+ KY+QDAFK+ LVIQ+TDDEK +WK++ +E++ REN KDI+A GFD T+IFS+
Sbjct: 103 LLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSN 162
Query: 61 FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 120
+ F +N++K++K + N+ + +FGF +IG+V FP + P F SSF F G
Sbjct: 163 VE-ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIG 219
Query: 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180
K + CL+P A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+I
Sbjct: 220 KGAM-CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSI 278
Query: 181 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240
Y+ D+ I+ KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE +
Sbjct: 279 YLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG 338
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 284
Y G + + E+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 339 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 240 bits (613), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 179/283 (63%), Gaps = 14/283 (4%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+FTK+LQ+ FKV + I++TDDEK + + ++++++ + EN DIIA GFD KTFIF
Sbjct: 95 IFTKWLQEKFKVNVYIEITDDEKFLRNVDYTLDQTKEWSYENILDIIAVGFDPNKTFIFQ 154
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
D +Y+ Y VK+AK +T+N+V FG +IG + +P +Q VP+ +F
Sbjct: 155 DTEYIKN-MYPLSVKIAKKLTFNEVRATFGLDTSSNIGIIFYPALQIVPT-------MFE 206
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
+ RCLIP IDQDPY+R+ RD+A +GY K A I S F P L G GKMS+S P +A
Sbjct: 207 KR---RCLIPAGIDQDPYWRLQRDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETA 263
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIK 238
IY+TD K ++ KI KYAFSGGQ +VELHRK G N ++D+ ++L F E DD + I+
Sbjct: 264 IYLTDDPKTVERKIMKYAFSGGQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIE 323
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
++Y +G MLTGE+KQ L L +E H+ R D +V+ F
Sbjct: 324 EDYRSGAMLTGELKQILVDKLNAFLEEHREKREKAKD-LVNVF 365
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 184/284 (64%), Gaps = 16/284 (5%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIF 58
+FTK+LQD F V L I++TDDEK M +N +++++++ A +N DIIA GF+ KTFIF
Sbjct: 95 IFTKWLQDKFNVNLYIEITDDEKFM-RNPEYTLDQTRQWAYDNILDIIAVGFNPDKTFIF 153
Query: 59 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
D +Y+ Y +K+AK +T+++V FG +IG + +P +Q P+ +F
Sbjct: 154 QDTEYIRN-MYPIAIKIAKKLTFSEVRATFGLDTSSNIGIIWYPALQIAPT-------MF 205
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ RCLIP IDQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S P +
Sbjct: 206 EKR---RCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPET 262
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHI 237
AIY+TD K ++ KI KYAFSGGQ ++ELHRK G N ++D+ ++L F E DD +++ I
Sbjct: 263 AIYLTDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKI 322
Query: 238 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
+++Y +G +LTGE+KQ L + L + +E H+ R ++V+ F
Sbjct: 323 EEDYRSGALLTGELKQILIEKLNDFLEEHRQKREEAK-KLVNVF 365
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 170/265 (64%), Gaps = 13/265 (4%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+FTK+LQ+ F L I++TDDEK M ++++++ A +N DIIA GF+ KTFIF
Sbjct: 94 IFTKWLQEKFNANLYIEITDDEKYMRNPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQ 153
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
D +Y+ Y VK+AK +T+++V FG +IG + +P +Q P+ +F
Sbjct: 154 DTEYIRN-MYPITVKIAKKLTFSEVRATFGLDASSNIGLIFYPALQIAPT-------MFE 205
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
K RCLIP IDQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S+P +A
Sbjct: 206 KK---RCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETA 262
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIK 238
IY+ D K ++ KI KYAFSGGQ ++ELHRK G N E+D+P ++L +F EDD ++ I+
Sbjct: 263 IYLVDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIE 322
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELV 263
+EY +G MLTGE+KQ L L +
Sbjct: 323 EEYRSGKMLTGELKQILIDKLNNFL 347
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 169/281 (60%), Gaps = 15/281 (5%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L IQ+TDDEK ++K NL+ E+++ A +N DIIA GFD KTFIF +
Sbjct: 97 TKWLQEKFDVNLYIQITDDEKFLFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNS 156
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK + ++ +FGFT + IG + FP +QA P+F F K
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQAAPTF-------FEKK 207
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
RCLIP AIDQDPY+R+ RD A +GY+K A + S FFP L G GKMSAS P +AIY
Sbjct: 208 ---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIY 264
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKE 240
+TD+ + KI K+A +GGQ +++ R+ G N E + K+L F E DD +L
Sbjct: 265 LTDNPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMERYYA 324
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
G +L GE K+ L + + E ++ HQ R +++V+ F
Sbjct: 325 CKNGELLCGECKRYLIQRVQEFLKEHQEKRKKA-EKLVEKF 364
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 161/270 (59%), Gaps = 14/270 (5%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L IQ+TDDEK ++K+ L+ E+++ A +N DIIA GFD +TFIF D
Sbjct: 96 TKWLQEKFGVNLYIQITDDEKFLFKDKLTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDS 155
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK + ++ +FGFT + IG + +P +QA P+F F K
Sbjct: 156 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFYPAIQAAPTF-------FEKK 206
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
RCLIP AIDQDPY+R+ RD A +GY+K A I S F P L G GKMSAS P +AIY
Sbjct: 207 ---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLMGLEGKMSASKPETAIY 263
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 240
+TD + + KI KYA +GG+ + + R+ G E + K+L FF EDD +L
Sbjct: 264 LTDDPEEVGRKIWKYALTGGRATAKEQREKGGEPEKCVVFKWLEIFFEEDDKKLMERYHA 323
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVAR 270
G +L G+ K+ L K + E ++ HQ R
Sbjct: 324 CKNGELLCGQCKRYLIKKVQEFLKEHQKKR 353
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 165/277 (59%), Gaps = 14/277 (5%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L IQ+TDDEK ++K NL+ E+++ A EN DIIA GFD KTFIF +
Sbjct: 97 TKWLQEKFGVNLYIQITDDEKFLFKENLTFEDTKHWAYENILDIIAVGFDPDKTFIFQNS 156
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK + ++ +FGFT + IG + FP +Q P+F F +
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FEKR 207
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
RCLIP AIDQDPY+R+ RD A +GY+K A I S F P+L +GKMSAS P +AIY
Sbjct: 208 ---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPETAIY 264
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 240
+TDS + ++ K+ K+A +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 265 LTDSPEDVEKKVWKFALTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYA 324
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 277
G + GE K+ L + E ++ HQ R ++
Sbjct: 325 CKNGELTCGECKRYLISKIQEFLKEHQKRRKKAEKQI 361
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 169/281 (60%), Gaps = 15/281 (5%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N DIIA GFD KTFIF +
Sbjct: 97 TKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNS 156
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK + ++ +FGFT + IG + FP +Q P+F F K
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FERK 207
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
RCLIP AIDQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +AIY
Sbjct: 208 ---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY 264
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 240
+TDS + ++ K+ K+ +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYA 324
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
G + GE K+ L + E ++ HQ R +++V+ F
Sbjct: 325 CKNGELTCGECKRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 197 bits (501), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 159/270 (58%), Gaps = 14/270 (5%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L IQ+TDDEK ++K LS E+++R A EN DIIA GFD KTFIF +
Sbjct: 96 TKWLQENFDVNLYIQITDDEKFLFKEKLSFEDTKRWAYENILDIIAVGFDPDKTFIFQNS 155
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK + ++ +FGF + IG + +P +QA P+F F K
Sbjct: 156 EFT--KIYEMALPIAKKINFSMARAVFGFNEQSKIGMIFYPAIQAAPTF-------FEKK 206
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
RCLIP AIDQDPY+R+ RD A +GY+K A I S F P L GKMSAS P +A+Y
Sbjct: 207 ---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPETAVY 263
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKE 240
+TD + KI K+A +GGQ +++ R+ G N E + K+ F E DD +L +
Sbjct: 264 LTDDPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMERYRA 323
Query: 241 YGAGGMLTGEVKQRLAKVLTELVERHQVAR 270
AG + G+ K+ L + + + ++ HQ R
Sbjct: 324 CKAGELTCGQCKRELIERVQKFLKEHQKKR 353
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 161/279 (57%), Gaps = 18/279 (6%)
Query: 3 TKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
TK+LQ+ F V L +Q+TDDEK ++K L+ E ++R A EN DIIA GFD KTFIF D
Sbjct: 96 TKWLQENFGVNLYVQITDDEKFLFKPQLTFEGTKRWAYENILDIIAVGFDPDKTFIFQDS 155
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
++ Y+ + +AK VTY+ +FGF + IG + FP +QA P+F F K
Sbjct: 156 EFT--KIYEMAIPIAKKVTYSMAKAVFGFNEQSKIGMIFFPAIQAAPTF-------FEEK 206
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 181
R LIP AIDQDPY+R+ RD A +GY+K A + S F P L G GKMSAS P +AIY
Sbjct: 207 ---RSLIPAAIDQDPYWRIQRDFAESLGYYKTAALHSKFVPGLMGLGGKMSASKPETAIY 263
Query: 182 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241
+TD + KI KYA +GG+ + + R+LG + + K+L F E D + + + Y
Sbjct: 264 LTDDPEEAGKKIWKYALTGGRATAKEQRELGGEPDKCVVFKWLEIFFEPDE--KKLLERY 321
Query: 242 GA---GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 277
A G +L G+ K+ L + + ++ HQ R E+
Sbjct: 322 IACKNGEILCGQCKRYLIEKVQNFLKEHQEKREKAKKEI 360
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 190 bits (483), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 160/282 (56%), Gaps = 9/282 (3%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+ K+L D F V + Q+TDDEK + +EE+ + A ENA D+IA GF K +
Sbjct: 94 ILLKWLSDKFGVEVYFQMTDDEKFYDDPEMRLEEATKWAYENALDVIALGFTPDKLHLII 153
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
D + Y KVAK +T+N V FGFT +IG + +P +Q +F P
Sbjct: 154 DTKDIK-PLYPIAAKVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAF---LPTELH 209
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
G+ LIPCAIDQDPYFR+ RD+A +GY KPA + S F AL GE+ KMSAS+PNSA
Sbjct: 210 GRP-TPVLIPCAIDQDPYFRLARDIAESLGYPKPATLYSKFIMALTGES-KMSASNPNSA 267
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239
IY D K I+ KI A++GG+ + E R+LG N +V Y F DDA +E I
Sbjct: 268 IYTIDDEKTIRRKIAN-AYTGGRPTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYH 326
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
+G +L GE KQ L + + + V++HQ AR D+ VDA+
Sbjct: 327 SCKSGALLCGECKQMLYEKIRKFVKQHQEAREKARDK-VDAY 367
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 157/281 (55%), Gaps = 14/281 (4%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+ K+ D F V + Q+TDDEK + +EE+ A ENA D+IA GF K +
Sbjct: 94 ILLKWFSDKFGVEVYFQMTDDEKFFDDPEMKLEEATGWAYENALDVIALGFGPDKLHLIV 153
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLF 118
D + Y V+VAK +T+N V FGFT +IG + +P +Q AV P+
Sbjct: 154 DTKDIA-PLYPIAVRVAKKLTWNTVKATFGFTDSSNIGLIFYPSLQIAVAFLPTEL---- 208
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
K+ LIPCAIDQDPYFR+ RD+A + Y KP + S F AL GE+ KMSAS+P+S
Sbjct: 209 -KKEPTPVLIPCAIDQDPYFRLARDIADSLSYPKPTTLYSKFIMALTGES-KMSASNPDS 266
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
AIY D K +K+KI AF+GG+ + E RK G N ++ Y F DDA +E I+
Sbjct: 267 AIYTMDDDKTVKHKILN-AFTGGRPTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIR 325
Query: 239 KEYGAGGMLTGEVK----QRLAKVLTELVERHQVARAAVTD 275
++ +G +L GE K ++++K L E ER + AR V +
Sbjct: 326 QDCKSGALLCGECKLKLHEKISKFLKEHRERREKARGKVDE 366
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 162/287 (56%), Gaps = 10/287 (3%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFS 59
+ K+ D F + + Q+TDDEK + +EE+ A ENA D+IA GF + +
Sbjct: 94 ILLKWFSDKFGLEVYFQITDDEKFYDDPEMKLEEATNWAYENALDVIALGFSPERLHLII 153
Query: 60 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLF 118
D + Y V+VAK +T+N V FGFT +IG + +P +Q AV P+
Sbjct: 154 DTKDIK-PLYPIAVRVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTEL---- 208
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
++ LIPCAIDQDPYFR+ RD+A +GY KP+ + S F AL GE+ KMSAS+P+S
Sbjct: 209 -RREATPVLIPCAIDQDPYFRLARDIADALGYPKPSTLYSKFIMALTGES-KMSASNPDS 266
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
AIY D K ++ K+ AF+GG+ + E RK G N EV Y F DDA +E I+
Sbjct: 267 AIYTLDDEKTVRRKVMN-AFTGGRPTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIR 325
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285
++ +G +L GE K +L + +T+ ++ H+ R ++ + ++V+
Sbjct: 326 QDCKSGALLCGECKLKLHEKITKFLKEHRERREKARGKVDEYRLSVK 372
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 155/285 (54%), Gaps = 15/285 (5%)
Query: 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 61
F + LQD F + + L+DDEK +K+ + E+ R N +D++A GFD T I D
Sbjct: 88 FARRLQDEFGARVYVPLSDDEKYWFKDQTPAETGDYLRANLRDLLAVGFDPELTRIVVDT 147
Query: 62 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 121
Y A V + + ++G D++G+ +P VQ P L G+
Sbjct: 148 -RDADVLYPLATAFAGDVRHATLQNVYG--EPDNVGQAFYPAVQTAHLL---LPQLVHGE 201
Query: 122 DHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSA 179
L+P A+DQDP+ R++RDVA + Y KP + F P+L G GKMS+S +
Sbjct: 202 HE--TLVPIAVDQDPHVRVSRDVAAKARYPVGKPGALLMQFLPSLAG-PGKMSSS-AGVS 257
Query: 180 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIK 238
I +TDS ++ K+ +A++GG+ SVE HR G D+P +YLS F E DDAEL I+
Sbjct: 258 IRLTDSPDTVREKVRTHAYTGGRASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIE 317
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD--EMVDAF 281
+EY AG +L+GE+K A +TE + HQ RAA+ D E +DAF
Sbjct: 318 REYRAGDLLSGELKDLAADRITEFLAAHQRRRAALGDVTEALDAF 362
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 137/282 (48%), Gaps = 13/282 (4%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDY 63
+ Q V + + + D E +N+ ++ + R+A E + A G D+
Sbjct: 88 FYQQEMDVKVYVPIADLEAHHARNMDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQS 147
Query: 64 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 123
+ + +A +T+N V +GFTGE ++G P VQA P G
Sbjct: 148 ERKTVQRMALLLAGRLTWNTVKNTYGFTGETNMGHAFAPIVQAADIL---HPQEIEGPH- 203
Query: 124 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 183
R L+P +DQDP+ R+TRD+A + KPA F L G GKMS+S PN+AI++T
Sbjct: 204 -RVLVPVGVDQDPHLRLTRDIAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLT 260
Query: 184 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED----DAELEHIKK 239
D + K K+ A +GG ++E HR+ G N + + + + + L D D +L I+K
Sbjct: 261 DDPETAKEKVWN-AKTGGGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRK 319
Query: 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
+ G ++ GE K+ + + L E++E + R V DE+ D
Sbjct: 320 KCREGDIICGECKRMVGEALAEILEELERRREDVRDELPDLL 361
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 17/265 (6%)
Query: 16 IQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK 74
I + D E +N+S E ++ LA E + IA G D K ++ Y K++
Sbjct: 102 IPIADLEAYWARNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLAL 158
Query: 75 V-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 133
+ +K ++++ I+GF GE +IG V P VQ S + ++P ID
Sbjct: 159 ILSKRTNWSEMKAIYGFKGETNIGHVFAPIVQVADILHPQLDENLSPEP-KPVVVPVGID 217
Query: 134 QDPYFRMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 190
QDP+ R+TRD+A R K P+ F L G GKMS+S P +AI++TD K +K
Sbjct: 218 QDPHIRLTRDIANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVK 275
Query: 191 NKINKYAFSGGQESVELHRKLGANLEVDIPVK-YLSFFLEDDAELEHIKKEYGAGGMLTG 249
KI A +GG+E++E H+K G E + + +L + DD EL I ++ +G + G
Sbjct: 276 KKIFS-AKTGGRETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCG 334
Query: 250 EVK----QRLAKVLTELVERHQVAR 270
+ K +R+ + L +L E+ + A+
Sbjct: 335 KCKKMAYERVVEFLKDLKEKREQAK 359
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 32/279 (11%)
Query: 8 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTK----------TF 56
D + I + D E + + E+S+R+A E IA G D+ K
Sbjct: 89 DRMGAEIFIPIADMEAYSARGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENL 148
Query: 57 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPH 116
+ D YV +A V +N++ I+GFTG + + P +Q
Sbjct: 149 MVEDLAYV----------LAGKVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDE 198
Query: 117 LFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMS 172
L + ++P DQDP+ R+TRD+A R G+ P+ F L G GKMS
Sbjct: 199 LGGPRP---VIVPVGPDQDPHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMS 253
Query: 173 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DD 231
++ P SAI+++D+ + + KI + A +GG+E+++ R+LG E I + L + + D
Sbjct: 254 SNRPKSAIFLSDTPEEAEAKI-RNAKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSD 312
Query: 232 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 270
+ LE I + G ++ GE K A+ + + E V R
Sbjct: 313 SRLEEIYESCRNGTLMCGECKNNTAEFIRKFFEELSVKR 351
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 35/278 (12%)
Query: 5 YLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFD 62
YLQ + FKV + + D E + + EE+ R+A E ++IA G D T + F
Sbjct: 96 YLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY--FQ 151
Query: 63 YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL---- 117
G Y ++++ + VT ++ I+G P + + S + L
Sbjct: 152 TNRGTPYFRLIQLFSGKVTAAEMEAIYG----------ELTPAKMMASLTQAADILHVQL 201
Query: 118 --FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKM 171
+ G H+ ++P DQDP+ R+TRD+A R+ +PA P L G KM
Sbjct: 202 DEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KM 257
Query: 172 SASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LE 229
S+S P+S I++TD + +NK+ + A +GG+ + E R+LG EV V ++ + +
Sbjct: 258 SSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMP 315
Query: 230 DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
DD E++HI G +L GE KQ + L + HQ
Sbjct: 316 DDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 40 ENAKDIIACGFDVTK-TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 98
E ++IA G + K T I+ +Y +Y+ + ++ VT ++ I+G + K
Sbjct: 131 EYVANLIALGLEKNKHTHIYFQTNY-ETPYYRLIQMFSRRVTLEEMSAIYG---DLEPSK 186
Query: 99 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR----IGYHKPA 154
+ QA + F G ++ ++P DQDP+ R+TRD+A R +G +PA
Sbjct: 187 IMAALTQAADILHPQLDY-FGGFKYV--VVPVGADQDPHIRLTRDIAARFENELGLRRPA 243
Query: 155 LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 214
F L G KMS+S P I++TD K+ + A +GG+ +VE R+LG
Sbjct: 244 STYHRFQTGLDG--NKMSSSRPEYTIFLTDPVDIAVRKLKR-ALTGGRATVEEQRRLGGE 300
Query: 215 LE-VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 273
E + YL +EDD +L I ++ +L G K+ A++L + +E HQ
Sbjct: 301 PEKCTVYEFYLYHLIEDDTQLRKIYEDCRGSRLLCGPDKEYAAELLAKFLEEHQRRLERA 360
Query: 274 TDEMVD 279
D +++
Sbjct: 361 RDRVLE 366
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 139 RMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 195
++ R+V G + PA F LQG GKMS+S P S I +TDS K K+ K
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQG--GKMSSSIPESQIALTDSPKEGAKKV-K 345
Query: 196 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQR 254
A +GG ++E +KLG E + + F L D EL IK+E +G + G KQ
Sbjct: 346 RAKTGGCVTLEEQKKLGGKPEECSVFELMLFHLIASDEELLEIKQECISGTRMCGSCKQL 405
Query: 255 LAKVLTELVERHQVARAAVTDEM 277
A+ + E ++ HQ R + +
Sbjct: 406 AAEKMQEFLKDHQEKRELAREHL 428
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 212
PA F LQG GKMS+S P+S I +TD K K+ K A +GG ++E +KLG
Sbjct: 360 PASTYHRFMSGLQG--GKMSSSIPDSHIALTDDPKEGAKKV-KRAKTGGCITLEEQKKLG 416
Query: 213 ANL-EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 271
E + L +EDD EL I++E G + G KQ A+ + E ++ HQ R
Sbjct: 417 GKPDECSVFELMLFHLIEDDEELLEIREECIYGTRMCGSCKQLAAEKMQEFLKDHQEKRE 476
Query: 272 AVTDEM 277
+++
Sbjct: 477 LAREQL 482
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 45 IIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPP 103
+IA GF F G K++ ++ V ++++ I+GF+GE + +
Sbjct: 131 LIALGFKPEGLIYFQS----GCGSVKDLAFELGAKVNFSELSAIYGFSGETSLSHMLSVA 186
Query: 104 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 148
QA K ++P DQDP+ R+TR +A ++
Sbjct: 187 TQAADILQPQLEEFGGSKP---VVVPVGPDQDPHLRLTRGLAGKM 228
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 124/320 (38%), Gaps = 69/320 (21%)
Query: 16 IQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-K 74
+ + D E + LS E+++ L K IIA G F + K++ +
Sbjct: 99 VAIADMEAHSVRGLSWEKTRELGMLYIKSIIALGLREDAVIYFQS----KSSHVKDLAFE 154
Query: 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA------------------VPSFPSSFPH 116
++ V ++++ I+GF + + K+ +QA VP PH
Sbjct: 155 LSAEVNFSELRAIYGFNSDTSLAKMFVTAIQAADILHPQLSDFGGPKPVVVPVGADQDPH 214
Query: 117 L------------FS--------------GKDHLRCLIPCAIDQDPYF------------ 138
+ FS G ++L L D+ Y
Sbjct: 215 MRLTRDLAARISIFSFEPVEGGVRVRSRKGAEYLSSLRDLEFDKKIYEEHMDIFGEAEEI 274
Query: 139 -RMTRDVAPRIG---YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 194
R R + IG + P+ F L G GKMS+S P S I + D + K+
Sbjct: 275 ERAVRKIEVEIGGFAFIPPSSTYHRFTTGLTG--GKMSSSKPESYISLLDPPEEGAKKVM 332
Query: 195 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED-DAELEHIKKEYGAGGMLTGEVKQ 253
K AF+GG+ + E R+LG + + + SF L D D EL I+ E G +L G+ K+
Sbjct: 333 K-AFTGGRATAEEQRRLGGEPDRCVVFELYSFHLIDSDEELNQIEAECREGRLLCGKCKK 391
Query: 254 RLAKVLTELVERHQVARAAV 273
A+++ ++ HQ AV
Sbjct: 392 MAAELVKSFLKEHQEKMEAV 411
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 149 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 208
G+ P+ + F L G GKMS+S+P S I + D + +K+ A +GG+++
Sbjct: 374 GFVPPSSVYHRFMTGLTG--GKMSSSEPASHISLLDDPETGADKVAA-ATTGGRDTAAEQ 430
Query: 209 RKLGANLEVDIPVKYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
R+ G + D PV L +L +DDA E + E G L G K++ A ++ + +E
Sbjct: 431 RERGGEPD-DCPVYELYAYLLAGDDDALAEEVYAECANGDRLCGGCKEQAADLMAQFLET 489
Query: 266 HQVARAAVTD 275
HQ R A D
Sbjct: 490 HQENREAARD 499
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 87 IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 146
I+GF G+ + + Q +P L + K +IP DQDP+ R RD+A
Sbjct: 182 IYGFGGDTDVSHMQSVVTQMADIL---YPQLDAPK---PTVIPVGPDQDPHVRFARDLAE 235
Query: 147 RIGYHK 152
R Y K
Sbjct: 236 RTRYFK 241
>sp|Q9YA64|SYY_AERPE Tyrosine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=tyrS PE=1 SV=1
Length = 364
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 42/234 (17%)
Query: 57 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED---HIGKVSFPPVQAVPSFPSS 113
+ SD DY G + K A + + I G E+ K+ +P +Q F
Sbjct: 120 LASDKDYWG--LVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMD 177
Query: 114 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG------- 166
G +DQ + RDVA ++G KP I + +LQG
Sbjct: 178 LDIALGG-----------MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEAS 226
Query: 167 --------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG----GQESVELHRKL--- 211
KMS S P +A++V DS I+ KI K G +E+ R +
Sbjct: 227 QGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFA 286
Query: 212 --GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 263
G L VD P KY + E ++++Y G + ++K +A+ L E+V
Sbjct: 287 RDGFTLRVDRPAKYGGPV--EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>sp|Q6L2J1|SYY_PICTO Tyrosine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=tyrS PE=3 SV=1
Length = 329
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 46/244 (18%)
Query: 46 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGED---HIGKV 99
+A G + F+++ ++ ++KVAK + ++ + I G + ED K
Sbjct: 96 LAAGLNSNVKFVWASELVEKSDYWSLLLKVAKNASLLRIRRSLPIMGRSEEDADRDFSKY 155
Query: 100 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 159
+P +Q F G +DQ + RD+A R+ KP + +
Sbjct: 156 IYPLMQVTDIFYLDVDFALGG-----------MDQRHAHMLARDIAERMNIKKPVSVHTP 204
Query: 160 FFPALQGET-----GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 214
+L+G KMS S+P+SAI++TDS IK KI K A+ +E + N
Sbjct: 205 LLSSLKGSGRMDSFKKMSKSEPDSAIFMTDSNDDIKRKI-KNAYCPMKE-------VNGN 256
Query: 215 LEVDIPVKYLSF-FLED--------------DAELEHIKKEYGAGGMLTGEVKQRLAKVL 259
+DI +KY+ F + D D +++ + + Y +G + ++K + ++L
Sbjct: 257 PVIDI-LKYIIFPYYNDKISIKRPESKGGPVDVDMDSLTRMYISGEIHPVDLKNAVGELL 315
Query: 260 TELV 263
+++
Sbjct: 316 CDII 319
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 212
P+ L+G GKMS+S P+S I + D + K KI + A +GG+++ E RKLG
Sbjct: 299 PSATYQKLMKGLKG--GKMSSSVPDSLISMNDDVEEAKRKIMR-ALTGGRDTEEEQRKLG 355
Query: 213 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVLTELVERHQV 268
E ++ ++DD + + +E +G + G E+ +++ L ++ E+ ++
Sbjct: 356 GEPEKCPVFDLYNYEIDDDKYVNEVFEECKSGKRMCGYCKREIADKMSIFLKDIKEKREI 415
Query: 269 ARAAVT 274
AR ++
Sbjct: 416 AREKLS 421
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 134
+ N++ ++GFT + I ++ P +QA + + + G ++P DQ
Sbjct: 149 LGNWTNMNELKALYGFTDSNDILHINAPLIQAADVLHTQLNN-YGGP--APTVVPVGFDQ 205
Query: 135 DPYFRMTRDVAPRI 148
DP+ R+ RD+A R+
Sbjct: 206 DPHIRLMRDLAKRM 219
>sp|P36421|SYYC_YEAST Tyrosine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYS1 PE=1 SV=3
Length = 394
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 131 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 190
+DQ F + + P +GY K A + + P L + GKMSASDPNS I + + K +K
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKIDLLEEPKQVK 247
Query: 191 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 226
KIN S G +VE + L V P++ L F
Sbjct: 248 KKINSAFCSPG--NVEENGLLSFVQYVIAPIQELKF 281
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFD 62
+LQ+ K + + L D + E Q A D ++ G D ++ IF S
Sbjct: 30 FLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFIQSQIP 89
Query: 63 YVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSFPSSFP 115
+ +Y N+V +A+ T + GF G + +P QA + +F ++
Sbjct: 90 ELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAFKAN-- 147
Query: 116 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPA 163
L+P DQ P TR++ YH L+E + P
Sbjct: 148 -----------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPG 196
Query: 164 LQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223
L G KMS S N IY++D A ++ K+ +E ++ N+ Y
Sbjct: 197 LDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHY 250
Query: 224 LSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
L F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 251 LDIFARKEDQADIEAMKEHYQIGGL--GDVKTK--RYLLDILER 290
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFD 62
+LQ+ K + + L D + E Q A D ++ G D ++ IF S
Sbjct: 30 FLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFIQSQIP 89
Query: 63 YVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSFPSSFP 115
+ +Y N+V +A+ T + GF G + +P QA + +F ++
Sbjct: 90 ELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAFKAN-- 147
Query: 116 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPA 163
L+P DQ P TR++ YH L+E + P
Sbjct: 148 -----------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPG 196
Query: 164 LQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223
L G KMS S N IY++D A ++ K+ +E ++ N+ Y
Sbjct: 197 LDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHY 250
Query: 224 LSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
L F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 251 LDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFD 62
+LQ+ K + + L D + E Q A D ++ G D ++ IF S
Sbjct: 30 FLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFIQSQIP 89
Query: 63 YVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSFPSSFP 115
+ +Y N+V +A+ T + GF G + +P QA + +F ++
Sbjct: 90 ELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAFKAN-- 147
Query: 116 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPA 163
L+P DQ P TR++ YH L+E + P
Sbjct: 148 -----------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPG 196
Query: 164 LQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223
L G KMS S N IY++D A ++ K+ +E ++ N+ Y
Sbjct: 197 LDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHY 250
Query: 224 LSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
L F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 251 LDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFD 62
+LQ+ K + + L D + E Q A D ++ G D ++ IF S
Sbjct: 30 FLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFIQSQIP 89
Query: 63 YVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSFPSSFP 115
+ +Y N+V +A+ T + GF G + +P QA + +F ++
Sbjct: 90 ELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAFKAN-- 147
Query: 116 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPA 163
L+P DQ P TR++ YH L+E + P
Sbjct: 148 -----------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPG 196
Query: 164 LQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223
L G KMS S N IY++D A ++ K+ +E ++ N+ Y
Sbjct: 197 LDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHY 250
Query: 224 LSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
L F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 251 LDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%)
Query: 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFD 62
+LQ+ K + + L D + E Q A D ++ G D ++ IF S
Sbjct: 30 FLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFIQSQIP 89
Query: 63 YVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSFPSSFP 115
+ +Y N+V +A+ T + GF G + +P QA + +F ++
Sbjct: 90 ELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAFKAN-- 147
Query: 116 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPA 163
L+P DQ P TR++ YH L+E + P
Sbjct: 148 -----------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPG 196
Query: 164 LQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223
L G KMS S N IY++D A ++ K+ +E ++ N+ Y
Sbjct: 197 LDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHY 250
Query: 224 LSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265
L F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 251 LDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q46BQ5|SYY_METBF Tyrosine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=tyrS PE=3 SV=1
Length = 317
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 14 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK-NM 72
+ + L D + + ++EE +++A N + IA G D KT DY GA Y N+
Sbjct: 63 ITVLLADVHAYLNRKGTLEEVRKIADYNKRCFIALGLDKEKTNFVYGSDYQLGAEYMLNV 122
Query: 73 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA- 131
+K+++ VT N+ D +G+ P + +P L D + A
Sbjct: 123 LKLSRSVTLNR-----ARRSMDEVGRAMDDPTVSQMVYP-----LMQAIDIAMLGVDIAV 172
Query: 132 --IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 189
IDQ + R+ +G+ P I + P L G G AS + I V D+ + I
Sbjct: 173 GGIDQRKIHMLARENLKNLGFETPICIHT---PILLGLDGTKMASSKENFISVDDTEEEI 229
Query: 190 KNKINK 195
K+ K
Sbjct: 230 YRKLKK 235
>sp|Q8TSI1|SYY_METAC Tyrosine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=tyrS PE=3 SV=1
Length = 317
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 6 LQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFD 62
LQ A FK+ ++ L D + K ++EE +++A N + IA G D +T F++ SDF
Sbjct: 56 LQKAGFKITVL--LADVHAYLNKKGTLEEVRKIADYNRRCFIALGLDEEQTDFVYGSDFQ 113
Query: 63 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 122
+G + N++K+++ VT N+ D +G+ P + +P L D
Sbjct: 114 -LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGRAMDDPTVSQMVYP-----LMQAID 162
Query: 123 HLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
+ A IDQ + R+ +G+ P I + P L G G AS ++
Sbjct: 163 IALLEVDVAVGGIDQRKIHMLARENLKSLGFETPICIHT---PILLGLDGTKMASSKDNF 219
Query: 180 IYVTDSAKAIKNKINK 195
I + D+ + I K K
Sbjct: 220 ISIDDTGEDIYRKFKK 235
>sp|Q8PVK0|SYY_METMA Tyrosine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=tyrS
PE=3 SV=1
Length = 317
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 6 LQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFD 62
LQ A FK+ ++ L D + + ++EE +++A N + IA G D +T F++ SDF
Sbjct: 56 LQKAGFKITVL--LADVHAYLNRKGTLEEVRKIADYNRRCFIALGLDEEQTDFVYGSDFQ 113
Query: 63 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 122
+G + N++K+++ VT N+ D +G+ P + +P L D
Sbjct: 114 -LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGRAMDDPTVSQMVYP-----LMQAID 162
Query: 123 HLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179
+ A IDQ + R+ +G+ P I + P L G G AS ++
Sbjct: 163 IALLEVDVAVGGIDQRKIHMLARENLKSLGFETPICIHT---PILLGLDGTKMASSKDNF 219
Query: 180 IYVTDSAKAIKNKINK 195
I V D+ + I K K
Sbjct: 220 ISVDDTEEEIYRKFKK 235
>sp|O83640|SYW_TREPA Tryptophan--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=trpS PE=3 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 43/266 (16%)
Query: 37 LARENAKDIIACGFDVTKTFIFSDF---DYVGGAF-YKNMVKVAKC--VTYNKVVGIFGF 90
L RE D +ACG D + I+ + AF + N+V V + + K +
Sbjct: 60 LVRELVLDYLACGIDAQRAVIYLQSAVPEVTELAFIFANLVTVPRLQRIPSLKEMAQAAN 119
Query: 91 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 150
E G + +P +QA + + HL +P D + + +TR+VA R
Sbjct: 120 LSELPFGLLGYPVLQAA--------DILLARAHL---VPVGKDNESHVELTREVAKRFNR 168
Query: 151 HKPALIESSFFP----------ALQGETG--KMSASDPNSAIYVTDSAKAIKNKINKYAF 198
+ FP L G G KMS S N AI+++D + ++ K+
Sbjct: 169 -----LYGEVFPLPRALLSDCATLVGTDGQAKMSKSLGN-AIFLSDDEETVRRKVRAMYT 222
Query: 199 SGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAK 257
+ ++ ++ N PV Y F + E+ H K+ Y AG + EVK LA+
Sbjct: 223 DPARTRADIPGRVEGN-----PVFAYHDAFNPNTDEVAHFKERYRAGRVGDTEVKDALAR 277
Query: 258 VLTELVERHQVARAAVTDEMVDAFMA 283
L +E + RA + E A++A
Sbjct: 278 ALNTFLEPIRARRAQL--EQQPAYLA 301
>sp|O84589|SYW_CHLTR Tryptophan--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=trpS PE=3 SV=1
Length = 346
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA---LQGE---------TGKMSAS 174
L+P D + + +TRD+A + FP LQGE GKMS S
Sbjct: 151 LVPVGKDNEAHVELTRDIAKTFNR-----LYGEVFPEPDILQGELTALVGTNGQGKMSKS 205
Query: 175 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 234
N+AIY++D AK ++ KI K + +H +E + Y F E+
Sbjct: 206 -ANNAIYLSDDAKTVQEKIRKLYTDPNR----IHATTPGRVEGNPLFIYHDLFNPHKEEV 260
Query: 235 EHIKKEYGAGGMLTGEVKQRLAK 257
E K Y G + EVK RLA+
Sbjct: 261 EEFKTRYRQGCIRDVEVKARLAE 283
>sp|Q9HKT3|SYY_THEAC Tyrosine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=tyrS PE=3 SV=1
Length = 332
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 69/263 (26%)
Query: 44 DIIACGFDV-TKTFI---FSDFDYVGGA-------FYKNMVKVAKCVTYNKVVGIFGFTG 92
D+I G ++ KTF + DYV + +++ + AK T +V+ G
Sbjct: 82 DLIRKGGEILRKTFQAEGLTKADYVWASDLVDSSEYWRMFIDTAKRSTLKRVIRSLPIMG 141
Query: 93 ------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 146
E +P +Q F F G +DQ + RD+A
Sbjct: 142 RNETDAEKDFSMYLYPIMQVTDIFYLDVDMAFGG-----------MDQRHAHMLARDIAE 190
Query: 147 RIGYHKPALIESSFFPALQGETG-----KMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 201
++ K + +L+G KMS SDPNSAI VTD + I+ KIN A+
Sbjct: 191 KMKRKKVVSVHGFLLSSLKGNARMDNFVKMSKSDPNSAILVTDHMEDIERKINA-AYCPP 249
Query: 202 QE--------------------SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241
Q+ S+E+H G+N +++ +E+ + Y
Sbjct: 250 QQVEGNPVAEIMKYIIIPYYGKSIEIH---GSNGVINLD------------SVENFDQAY 294
Query: 242 GAGGMLTGEVKQRLAKVLTELVE 264
G + ++K ++A +L E+VE
Sbjct: 295 QRGEIQPADLKHKVATILNEMVE 317
>sp|Q821H9|SYW_CHLCV Tryptophan--tRNA ligase OS=Chlamydophila caviae (strain GPIC)
GN=trpS PE=3 SV=1
Length = 345
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 45/252 (17%)
Query: 44 DIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT----------GE 93
D ++ G D K+ I+ Y+ + + ++ N+++GI G
Sbjct: 72 DWLSVGIDPNKSSIY--LQSAIPEIYELHLLFSMLISVNRIMGIPSLKEMAKNASIEEGG 129
Query: 94 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 153
+G + +P +Q+ + L+P D + + +TRD+A
Sbjct: 130 LSLGLMGYPVLQSADILLAKAQ-----------LVPVGKDNEAHIELTRDIARNFNR--- 175
Query: 154 ALIESSFFP---ALQGE---------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 201
+ FP LQGE GKMS S N+AIY++D I++K+ +
Sbjct: 176 --LYGEIFPEPETLQGELTSLVGIDGQGKMSKS-ANNAIYLSDDDATIEDKVRRMYTDPN 232
Query: 202 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 261
+ +H +E + Y F + E+E K Y G + E+K RLA+ L
Sbjct: 233 R----IHASTPGRVEGNPLFIYHDIFNPNKEEVEEFKTRYRQGCIKDVEIKTRLAEELIR 288
Query: 262 LVERHQVARAAV 273
++ + RA +
Sbjct: 289 FLQPFREKRAEL 300
>sp|Q2NHE1|SYY_METST Tyrosine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=tyrS PE=3 SV=1
Length = 318
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 24/198 (12%)
Query: 4 KYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 62
K LQDA FK+ + I + + +++E +A+ N K A G FI D
Sbjct: 56 KTLQDAGFKITIFI--ANLHAYLNNKGTLDELNEVAKYNIKCFKALGLSEDTNFILGS-D 112
Query: 63 YVGGAFYKNMVKVAKCVTYNKVVGIFGFT--GEDH-IGKVSFPPVQAVPSFPSSFPHLFS 119
+ + + K AK T + E H + + +P +QA+
Sbjct: 113 RMTPEYITEVFKAAKLTTIQRAQRSMALVSRNETHDVAQTLYPIMQALDIHDLDADIAVG 172
Query: 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPN 177
G ++Q + R++ PR+GY P I P + G G KMS+S N
Sbjct: 173 G-----------MEQRKIHMLAREILPRLGYRPPVCI---HIPLIHGTDGSDKMSSSKGN 218
Query: 178 SAIYVTDSAKAIKNKINK 195
I + D+ K IKNKINK
Sbjct: 219 -FIAIDDTPKEIKNKINK 235
>sp|O29482|SYY_ARCFU Tyrosine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tyrS
PE=1 SV=1
Length = 323
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 14 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNM 72
+++ L D + + + EE +A N K IA G D ++ F+ + + ++
Sbjct: 66 IIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDV 125
Query: 73 VKVAKCVTYNKV---VGIFGFTGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 128
+K+A+ T N+ + ED + ++ +P +QA+ HL G D L
Sbjct: 126 LKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL-----DIAHL--GVD----LA 174
Query: 129 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 188
IDQ + R+ PR+GY P + + L G+ KMS+S N I V D +
Sbjct: 175 VGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQ--KMSSSKGNY-ISVRDPPEE 231
Query: 189 IKNKINK 195
++ KI K
Sbjct: 232 VERKIRK 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,242,687
Number of Sequences: 539616
Number of extensions: 4637623
Number of successful extensions: 12772
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 12585
Number of HSP's gapped (non-prelim): 178
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)