Query 022791
Match_columns 292
No_of_seqs 175 out of 1184
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02486 aminoacyl-tRNA ligase 100.0 1.3E-72 2.7E-77 534.1 13.2 288 1-288 96-383 (383)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 6.7E-72 1.5E-76 512.6 12.3 265 3-286 29-312 (314)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.1E-69 2.4E-74 512.8 11.7 274 2-287 89-367 (368)
4 KOG2145 Cytoplasmic tryptophan 100.0 4.1E-68 8.9E-73 473.0 19.4 288 1-288 108-396 (397)
5 PRK00927 tryptophanyl-tRNA syn 100.0 2.6E-67 5.6E-72 492.8 10.3 265 3-286 24-310 (333)
6 PLN02886 aminoacyl-tRNA ligase 100.0 2.6E-66 5.5E-71 489.5 10.8 261 3-285 69-363 (389)
7 PRK12556 tryptophanyl-tRNA syn 100.0 4E-66 8.7E-71 483.3 11.2 258 5-285 30-310 (332)
8 PRK12282 tryptophanyl-tRNA syn 100.0 4.7E-66 1E-70 483.3 11.7 263 5-286 29-309 (333)
9 PRK12284 tryptophanyl-tRNA syn 100.0 1.4E-65 2.9E-70 487.8 11.6 259 4-285 26-310 (431)
10 TIGR00233 trpS tryptophanyl-tR 100.0 6.2E-65 1.3E-69 475.4 12.2 264 3-285 26-307 (328)
11 PRK12283 tryptophanyl-tRNA syn 100.0 7.8E-65 1.7E-69 479.0 10.8 265 2-285 24-375 (398)
12 KOG2713 Mitochondrial tryptoph 100.0 1.9E-64 4E-69 448.5 8.2 263 3-285 36-323 (347)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 5.4E-63 1.2E-67 463.1 9.6 249 2-274 53-324 (329)
14 cd00806 TrpRS_core catalytic c 100.0 1.5E-60 3.3E-65 437.4 9.5 242 2-262 23-280 (280)
15 PTZ00126 tyrosyl-tRNA syntheta 100.0 6.2E-59 1.3E-63 441.4 12.3 247 4-274 92-367 (383)
16 PTZ00348 tyrosyl-tRNA syntheta 100.0 5.1E-56 1.1E-60 444.2 13.2 253 10-274 63-341 (682)
17 PF00579 tRNA-synt_1b: tRNA sy 100.0 3.7E-53 8E-58 391.1 -0.6 247 2-264 28-292 (292)
18 cd00805 TyrRS_core catalytic c 100.0 3.6E-52 7.8E-57 380.3 4.2 227 2-261 24-268 (269)
19 cd00395 Tyr_Trp_RS_core cataly 100.0 1.8E-48 3.8E-53 356.3 5.9 230 2-262 23-273 (273)
20 KOG2144 Tyrosyl-tRNA synthetas 100.0 1E-46 2.3E-51 335.8 7.2 249 6-275 61-336 (360)
21 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.2E-44 2.6E-49 362.5 10.9 244 4-271 400-661 (682)
22 PRK05912 tyrosyl-tRNA syntheta 100.0 8E-44 1.7E-48 341.8 9.5 237 2-274 57-319 (408)
23 PRK13354 tyrosyl-tRNA syntheta 100.0 5E-43 1.1E-47 336.0 10.0 239 1-275 56-318 (410)
24 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 7E-36 1.5E-40 284.2 6.8 217 2-265 54-294 (377)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 4.5E-30 9.8E-35 244.0 6.9 241 2-285 56-320 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.3 1.7E-12 3.7E-17 121.2 5.0 231 3-265 88-351 (467)
27 cd00808 GluRS_core catalytic c 98.9 1.2E-09 2.7E-14 98.1 3.5 156 3-195 24-191 (239)
28 cd00802 class_I_aaRS_core cata 98.6 1.3E-09 2.8E-14 90.3 -4.3 65 101-175 78-143 (143)
29 cd00418 GlxRS_core catalytic c 97.9 1.3E-05 2.8E-10 71.8 4.6 154 3-195 24-182 (230)
30 PRK00750 lysK lysyl-tRNA synth 97.6 4.3E-05 9.4E-10 76.1 3.7 55 127-184 237-293 (510)
31 COG0162 TyrS Tyrosyl-tRNA synt 96.7 0.0012 2.6E-08 63.7 2.9 45 231-275 307-359 (401)
32 cd00674 LysRS_core_class_I cat 96.2 0.00097 2.1E-08 63.5 -0.7 55 127-184 230-288 (353)
33 cd09287 GluRS_non_core catalyt 93.4 0.12 2.5E-06 46.8 4.6 145 4-175 25-171 (240)
34 PRK01406 gltX glutamyl-tRNA sy 92.7 0.099 2.1E-06 51.9 3.4 66 126-195 209-280 (476)
35 PRK05743 ileS isoleucyl-tRNA s 92.0 0.07 1.5E-06 57.1 1.5 56 119-181 543-602 (912)
36 TIGR00464 gltX_bact glutamyl-t 91.7 0.36 7.9E-06 47.8 6.0 66 126-195 199-270 (470)
37 cd00668 Ile_Leu_Val_MetRS_core 91.5 0.03 6.5E-07 52.2 -1.8 53 127-182 229-284 (312)
38 PRK01611 argS arginyl-tRNA syn 91.3 0.038 8.2E-07 55.2 -1.4 59 127-188 276-339 (507)
39 cd00817 ValRS_core catalytic c 90.2 0.06 1.3E-06 51.8 -1.1 52 127-182 299-354 (382)
40 cd00807 GlnRS_core catalytic c 90.0 0.52 1.1E-05 42.5 4.8 145 3-176 24-170 (238)
41 PRK00260 cysS cysteinyl-tRNA s 89.7 0.082 1.8E-06 52.2 -0.6 60 116-183 215-278 (463)
42 cd00812 LeuRS_core catalytic c 88.9 0.078 1.7E-06 49.6 -1.3 53 127-183 227-287 (314)
43 TIGR00392 ileS isoleucyl-tRNA 88.6 0.097 2.1E-06 55.6 -1.0 53 127-183 567-623 (861)
44 PRK11893 methionyl-tRNA synthe 88.3 0.17 3.7E-06 50.3 0.5 52 127-184 257-312 (511)
45 cd00818 IleRS_core catalytic c 87.7 0.099 2.1E-06 49.5 -1.5 53 127-183 255-311 (338)
46 PRK14895 gltX glutamyl-tRNA sy 87.7 0.11 2.4E-06 51.8 -1.2 68 126-195 198-269 (513)
47 TIGR00467 lysS_arch lysyl-tRNA 87.4 0.16 3.4E-06 50.9 -0.3 54 127-182 228-285 (515)
48 TIGR00435 cysS cysteinyl-tRNA 87.3 0.1 2.3E-06 51.6 -1.7 61 116-182 214-276 (465)
49 TIGR00456 argS arginyl-tRNA sy 87.0 0.13 2.8E-06 52.1 -1.2 65 127-195 331-396 (566)
50 PRK13804 ileS isoleucyl-tRNA s 86.7 0.15 3.3E-06 54.8 -0.9 57 119-182 581-641 (961)
51 PRK04156 gltX glutamyl-tRNA sy 86.6 0.19 4.2E-06 50.8 -0.2 67 99-176 278-344 (567)
52 PLN02843 isoleucyl-tRNA synthe 85.1 0.23 5.1E-06 53.5 -0.5 56 119-181 562-621 (974)
53 PRK05729 valS valyl-tRNA synth 84.7 0.18 4E-06 53.6 -1.4 53 127-183 476-532 (874)
54 PLN02381 valyl-tRNA synthetase 84.4 0.17 3.7E-06 55.0 -1.9 56 120-182 607-666 (1066)
55 PRK13208 valS valyl-tRNA synth 84.0 0.25 5.4E-06 52.2 -0.9 51 127-182 489-544 (800)
56 TIGR00395 leuS_arch leucyl-tRN 83.7 0.34 7.3E-06 52.1 -0.0 53 127-184 576-633 (938)
57 PRK12418 cysteinyl-tRNA synthe 83.4 0.25 5.3E-06 47.7 -1.1 62 116-183 209-273 (384)
58 PF00133 tRNA-synt_1: tRNA syn 83.4 0.57 1.2E-05 47.9 1.5 56 120-182 513-572 (601)
59 TIGR03838 queuosine_YadB gluta 82.7 0.58 1.3E-05 43.1 1.1 82 101-192 170-251 (272)
60 PTZ00419 valyl-tRNA synthetase 82.6 0.24 5.1E-06 53.6 -1.7 55 120-181 537-595 (995)
61 PLN02286 arginine-tRNA ligase 82.5 0.67 1.4E-05 47.2 1.6 66 126-194 330-401 (576)
62 PRK14900 valS valyl-tRNA synth 82.5 0.25 5.3E-06 53.7 -1.6 54 127-184 494-551 (1052)
63 PRK06039 ileS isoleucyl-tRNA s 81.8 0.28 6E-06 53.0 -1.5 56 120-182 544-603 (975)
64 cd00672 CysRS_core catalytic c 81.6 0.25 5.3E-06 43.8 -1.7 53 129-184 133-187 (213)
65 PLN02943 aminoacyl-tRNA ligase 81.6 0.36 7.8E-06 52.0 -0.8 58 120-184 535-596 (958)
66 PRK05710 glutamyl-Q tRNA(Asp) 81.6 0.46 1E-05 44.3 0.0 66 101-176 177-242 (299)
67 TIGR00422 valS valyl-tRNA synt 79.9 0.37 8E-06 51.3 -1.4 54 127-184 481-538 (861)
68 cd00814 MetRS_core catalytic c 79.6 0.38 8.2E-06 45.0 -1.3 51 127-183 238-292 (319)
69 cd00671 ArgRS_core catalytic c 79.5 0.37 8E-06 42.4 -1.3 45 129-175 164-211 (212)
70 COG0008 GlnS Glutamyl- and glu 79.3 0.72 1.6E-05 45.7 0.5 49 126-176 208-256 (472)
71 PRK12268 methionyl-tRNA synthe 79.2 0.58 1.3E-05 47.2 -0.2 53 127-183 290-346 (556)
72 PLN02563 aminoacyl-tRNA ligase 78.8 0.63 1.4E-05 50.1 -0.1 42 119-163 614-664 (963)
73 PLN02959 aminoacyl-tRNA ligase 78.6 0.35 7.6E-06 52.7 -2.0 52 127-183 674-730 (1084)
74 KOG0432 Valyl-tRNA synthetase 77.9 2.7 5.9E-05 44.3 4.1 26 154-182 579-604 (995)
75 PRK12300 leuS leucyl-tRNA synt 77.8 1.5 3.2E-05 47.1 2.4 52 127-182 533-588 (897)
76 PLN02882 aminoacyl-tRNA ligase 77.8 1.1 2.4E-05 49.3 1.4 54 120-180 566-623 (1159)
77 TIGR03447 mycothiol_MshC cyste 77.1 0.53 1.1E-05 45.9 -1.1 51 129-182 246-299 (411)
78 PF01921 tRNA-synt_1f: tRNA sy 76.6 0.18 3.8E-06 48.2 -4.4 62 127-191 237-307 (360)
79 COG0215 CysS Cysteinyl-tRNA sy 76.0 0.8 1.7E-05 45.1 -0.2 50 2-51 50-106 (464)
80 TIGR00396 leuS_bact leucyl-tRN 75.4 0.61 1.3E-05 49.6 -1.3 41 120-163 519-568 (842)
81 PRK00133 metG methionyl-tRNA s 74.2 0.83 1.8E-05 47.3 -0.6 51 127-183 287-341 (673)
82 PRK12267 methionyl-tRNA synthe 73.5 0.74 1.6E-05 47.4 -1.2 52 127-184 257-312 (648)
83 PTZ00399 cysteinyl-tRNA-synthe 71.6 0.93 2E-05 46.8 -1.0 60 116-183 263-327 (651)
84 PLN02627 glutamyl-tRNA synthet 71.0 1.6 3.4E-05 44.0 0.5 83 101-195 234-322 (535)
85 TIGR00398 metG methionyl-tRNA 70.4 1.1 2.3E-05 45.0 -0.8 54 127-184 285-340 (530)
86 PRK12451 arginyl-tRNA syntheta 70.3 0.83 1.8E-05 46.3 -1.6 59 126-188 327-388 (562)
87 COG0060 IleS Isoleucyl-tRNA sy 69.5 3.1 6.8E-05 44.5 2.3 57 127-192 558-619 (933)
88 PLN02946 cysteine-tRNA ligase 68.9 1 2.2E-05 45.5 -1.3 56 116-177 272-330 (557)
89 PRK14536 cysS cysteinyl-tRNA s 68.3 1.1 2.4E-05 44.7 -1.2 53 127-182 236-290 (490)
90 PTZ00427 isoleucine-tRNA ligas 68.1 2.5 5.4E-05 46.7 1.3 71 94-177 652-727 (1205)
91 PRK12558 glutamyl-tRNA synthet 67.6 1.9 4.2E-05 42.4 0.3 72 126-199 198-273 (445)
92 cd02156 nt_trans nucleotidyl t 65.9 1.3 2.9E-05 34.2 -1.0 45 127-175 59-105 (105)
93 PRK12410 glutamylglutaminyl-tR 65.7 1.9 4.1E-05 42.3 -0.2 151 101-275 175-343 (433)
94 PF01406 tRNA-synt_1e: tRNA sy 65.0 2.5 5.3E-05 39.5 0.4 62 2-64 36-105 (300)
95 COG0525 ValS Valyl-tRNA synthe 63.8 2.2 4.8E-05 45.2 -0.1 29 151-182 506-536 (877)
96 COG0018 ArgS Arginyl-tRNA synt 63.7 2.4 5.3E-05 43.1 0.2 71 121-193 333-405 (577)
97 PF00749 tRNA-synt_1c: tRNA sy 61.3 2.3 4.9E-05 39.9 -0.5 52 126-179 201-252 (314)
98 PRK00390 leuS leucyl-tRNA synt 60.9 1.6 3.4E-05 46.3 -1.8 51 120-182 522-581 (805)
99 PF09334 tRNA-synt_1g: tRNA sy 60.1 2.2 4.9E-05 41.2 -0.8 31 148-182 307-338 (391)
100 COG1384 LysS Lysyl-tRNA synthe 59.2 3.4 7.4E-05 41.2 0.3 55 127-184 232-290 (521)
101 PLN03233 putative glutamate-tR 56.9 3.9 8.4E-05 41.1 0.2 65 100-175 187-251 (523)
102 PRK14535 cysS cysteinyl-tRNA s 56.2 3.4 7.4E-05 42.8 -0.3 52 2-54 276-335 (699)
103 COG0495 LeuS Leucyl-tRNA synth 54.3 8.3 0.00018 40.9 2.2 25 156-183 567-591 (814)
104 PTZ00402 glutamyl-tRNA synthet 53.2 4.4 9.5E-05 41.4 -0.0 66 100-176 229-294 (601)
105 PRK14534 cysS cysteinyl-tRNA s 52.5 3.5 7.5E-05 41.1 -0.9 52 127-182 236-290 (481)
106 PLN02224 methionine-tRNA ligas 51.3 5.6 0.00012 40.9 0.3 52 127-184 324-379 (616)
107 PF00750 tRNA-synt_1d: tRNA sy 51.3 2 4.3E-05 41.0 -2.7 69 120-191 236-308 (354)
108 KOG0437 Leucyl-tRNA synthetase 49.3 26 0.00056 36.9 4.6 37 169-206 709-745 (1080)
109 PLN02610 probable methionyl-tR 47.8 7.1 0.00015 41.4 0.5 28 152-183 332-360 (801)
110 COG0143 MetG Methionyl-tRNA sy 46.0 8.8 0.00019 39.0 0.8 15 169-184 332-346 (558)
111 PLN02859 glutamine-tRNA ligase 42.9 9.1 0.0002 40.3 0.4 67 99-176 439-505 (788)
112 PLN02907 glutamate-tRNA ligase 31.7 13 0.00028 39.0 -0.6 64 101-175 390-453 (722)
113 PF04255 DUF433: Protein of un 30.9 37 0.0008 23.2 1.8 25 230-256 30-54 (56)
114 KOG3046 Transcription factor, 24.9 1E+02 0.0022 25.6 3.5 85 158-273 51-136 (147)
115 PRK09348 glyQ glycyl-tRNA synt 24.3 49 0.0011 30.3 1.8 69 29-103 86-164 (283)
116 cd00733 GlyRS_alpha_core Class 24.2 49 0.0011 30.2 1.8 69 29-103 82-160 (279)
117 TIGR00388 glyQ glycyl-tRNA syn 24.0 48 0.001 30.5 1.7 34 29-65 83-117 (293)
118 PF04558 tRNA_synt_1c_R1: Glut 21.6 1.3E+02 0.0029 25.4 3.9 58 215-272 85-143 (164)
119 KOG1515 Arylacetamide deacetyl 21.3 1.8E+02 0.0038 27.7 5.0 60 2-63 114-176 (336)
120 KOG0434 Isoleucyl-tRNA synthet 21.1 27 0.00059 36.4 -0.5 73 92-177 532-608 (1070)
121 KOG0436 Methionyl-tRNA synthet 20.6 66 0.0014 31.8 2.0 9 169-177 343-351 (578)
122 PF02037 SAP: SAP domain; Int 20.2 1.1E+02 0.0024 18.7 2.3 31 233-263 5-35 (35)
No 1
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-72 Score=534.11 Aligned_cols=288 Identities=88% Similarity=1.356 Sum_probs=270.6
Q ss_pred CchhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 80 (292)
Q Consensus 1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 80 (292)
++++|||+++|+.++|+|||+|+++.+..+++++++++++++++|+|||+||+|++||.|++|...+||..+.+++|++|
T Consensus 96 ~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~~~~~~~~~~l~r~~t 175 (383)
T PLN02486 96 MFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVT 175 (383)
T ss_pred HHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHhHhHHHHHHHHHhhCc
Confidence 47899999889999999999999998669999999999999999999999999999998888764568999999999999
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 160 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~ 160 (292)
++++++.+|+.++.++|+++||+|||||+|+.+|+.++....+++|+||||.||+||+++|||+|+|||+.+|+.+++++
T Consensus 176 ~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~ 255 (383)
T PLN02486 176 LNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRF 255 (383)
T ss_pred HHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceecccc
Confidence 99999999998888999999999999999988887665554568899999999999999999999999999999999999
Q ss_pred cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791 161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240 (292)
Q Consensus 161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~ 240 (292)
+|||+|+.+|||||+|||+|+|+|+|++|++||++|||||++.+.+++++.||||++|++|+|+.+|.++++++++++++
T Consensus 256 lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~ 335 (383)
T PLN02486 256 FPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKE 335 (383)
T ss_pred ccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999997667889999999
Q ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCC
Q 022791 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 288 (292)
Q Consensus 241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~ 288 (292)
|.+|+++|++||+.|++.|+++|+|+|+|+++++++.|++++..+++|
T Consensus 336 y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred hccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999999999999988875
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-72 Score=512.64 Aligned_cols=265 Identities=29% Similarity=0.421 Sum_probs=235.6
Q ss_pred hhh-HHhhcCcceEEEeeccccccccccCH-HHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
..| +|+. +..++++|||+||+|.+..++ +.+++++++++++||||||||+|++||.||++++| |++. .++
T Consensus 29 ~~v~~q~~-~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~g 107 (314)
T COG0180 29 NWVLLQEE-YYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFG 107 (314)
T ss_pred HHHHHhcc-cCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHHHHHHHHccCcHH
Confidence 345 5554 246677779999999853333 88999999999999999999999999999999987 4444 489
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---- 149 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n---- 149 (292)
+|+|+++||++..+.+ .+.++|++.||+|||| |||.|++ |+||||.||+||+|||||||+|||
T Consensus 108 el~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y~ 174 (314)
T COG0180 108 ELERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLYG 174 (314)
T ss_pred HHHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhcC
Confidence 9999999999988764 4889999999999999 9999999 589999999999999999999999
Q ss_pred --CCCccchhcc--ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhh
Q 022791 150 --YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 225 (292)
Q Consensus 150 --~~~p~~l~~~--~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~ 225 (292)
+++|..+++. +||||+|| +|||||+|||+|+|+|+|++|+|||++ |+||| .+..++++ ||+|++||+|.|+.
T Consensus 175 ~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~~ 250 (314)
T COG0180 175 EVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIYS 250 (314)
T ss_pred CccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHHH
Confidence 7899998876 99999998 999999999999999999999999999 99999 44455555 99999999999999
Q ss_pred hhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791 226 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 286 (292)
Q Consensus 226 ~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~ 286 (292)
+|.. +++.++++++|++|+++||+||+.|++.|+++|+|||+||++++++ +++.++..+.
T Consensus 251 ~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~ 312 (314)
T COG0180 251 AFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA 312 (314)
T ss_pred HhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence 9964 5677799999999999999999999999999999999999999887 7999887653
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-69 Score=512.84 Aligned_cols=274 Identities=37% Similarity=0.613 Sum_probs=252.1
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY 81 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~ 81 (292)
+++|||+ +|+.++|+||||||++++..+++++++++++++++|+|||+||+|++||.||++++ ++..+..+++.+|+
T Consensus 89 ~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~--~~~l~~~l~~~~t~ 165 (368)
T PRK12285 89 ELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK--VYDLAFELAKKVNF 165 (368)
T ss_pred HHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH--HHHHHHHHHhhCcH
Confidence 5788999 59999999999999998668999999999999999999999999999999999974 77788899999999
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc----CCCCccchh
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIE 157 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~----n~~~p~~l~ 157 (292)
+++++.+|++++.|+|+++||+|||||+|++++.. .+++ |+||||+||+||+||||++|+|| |+++|.+++
T Consensus 166 ~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~~~--~~~~---~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~ 240 (368)
T PRK12285 166 SELKAIYGFTGETNIGHIFYPATQAADILHPQLEE--GPKP---TLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTY 240 (368)
T ss_pred HHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcccc--cCCc---eEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHh
Confidence 99999999888899999999999999444333321 2555 79999999999999999999999 889999999
Q ss_pred ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-cChHHHHH
Q 022791 158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEH 236 (292)
Q Consensus 158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~ee 236 (292)
++++|||+| +|||||+|+|+|+|+|+|++|++||++ |+||++.+.+++++.||||++|++++|+++|. .+++++++
T Consensus 241 ~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~ee 317 (368)
T PRK12285 241 HKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKE 317 (368)
T ss_pred hhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHH
Confidence 999999999 699999999999999999999999999 99999999889999999999999999999987 46789999
Q ss_pred HHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 237 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 237 l~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...++
T Consensus 318 i~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 318 IYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 999999999999999999999999999999999999999 99999887654
No 4
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-68 Score=472.95 Aligned_cols=288 Identities=66% Similarity=1.118 Sum_probs=281.1
Q ss_pred CchhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhhhhe
Q 022791 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCV 79 (292)
Q Consensus 1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~~ 79 (292)
+|+||||+.++++++|++.|.++++....+.++..+.+++++++++|||+||+||+||.+.++.+ +.++.++.++++.+
T Consensus 108 iftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~v 187 (397)
T KOG2145|consen 108 IFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCV 187 (397)
T ss_pred HHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHHHhhee
Confidence 58999999999999999999999998669999999999999999999999999999999999986 69999999999999
Q ss_pred eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791 80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 159 (292)
Q Consensus 80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~ 159 (292)
|+++++..+||+++.++|.+.+|..|||++|++|||.|+..+.|+||++|+.+||+|++++|||+|+|+|++||+.+++.
T Consensus 188 t~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~Kpali~st 267 (397)
T KOG2145|consen 188 TLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYPKPALIHST 267 (397)
T ss_pred chhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCCCcceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791 160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239 (292)
Q Consensus 160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~ 239 (292)
++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+|++.++|+|++.||||++++.|+||++|.+++.++|+++.
T Consensus 268 ffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~ 347 (397)
T KOG2145|consen 268 FFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRK 347 (397)
T ss_pred hchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCC
Q 022791 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 288 (292)
Q Consensus 240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~ 288 (292)
+|.+|+|..||+|+.+.+.|.++++.+|++|++++++.|++++..++++
T Consensus 348 ~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~ 396 (397)
T KOG2145|consen 348 DYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLS 396 (397)
T ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCC
Confidence 9999999999999999999999999999999999999999999987765
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-67 Score=492.84 Aligned_cols=265 Identities=25% Similarity=0.340 Sum_probs=238.4
Q ss_pred hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
.+| ||++ +.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+.
T Consensus 24 ~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~~~el~~~l~~~~~~~ 100 (333)
T PRK00927 24 KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLG 100 (333)
T ss_pred HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCchhHHHHHHHHhhhhHH
Confidence 466 9995 5667888999999975 69999999999999999999999999999999999987 2222 479
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 150 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--- 150 (292)
+|+|++++++.... +.++.++|+++||+|||| |||.+++| +||||.||+||+||||++|+|||+
T Consensus 101 ~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~d---ivpvG~DQ~~h~elaRdia~~~n~~~~ 167 (333)
T PRK00927 101 ELERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKAD---LVPVGEDQKQHLELTRDIARRFNNLYG 167 (333)
T ss_pred HHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCCC---EEeeccchHHHHHHHHHHHHHhhhhcc
Confidence 99999999987543 236789999999999999 99999995 899999999999999999999995
Q ss_pred ---CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791 151 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 222 (292)
Q Consensus 151 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~ 222 (292)
++|..++ +++||||+|+++|||||+|+ |+|+|+|+|++|++||++ |+||+..+.+++++.+++|+++++++
T Consensus 168 ~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~ 246 (333)
T PRK00927 168 EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLT 246 (333)
T ss_pred ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHH
Confidence 5787665 38999999987799999986 899999999999999999 99999887777889999999999999
Q ss_pred hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791 223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 286 (292)
Q Consensus 223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~ 286 (292)
|+++|+ +.++++++++|.+|+++|++||+.||+.|+++|+|+|+||++++++ +|+++|..|.
T Consensus 247 ~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~ 310 (333)
T PRK00927 247 IYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA 310 (333)
T ss_pred HHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999994 6789999999999999999999999999999999999999999976 8999998763
No 6
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-66 Score=489.55 Aligned_cols=261 Identities=21% Similarity=0.281 Sum_probs=230.3
Q ss_pred hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
.+| ||+ |+.++|+||||||+|. ..+++++++++++++++|+|||+||+|+.||.||++++| |.+. .++
T Consensus 69 ~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g 145 (389)
T PLN02886 69 KNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIG 145 (389)
T ss_pred HHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHH
Confidence 356 998 5556778899999997 489999999999999999999999999999999999987 3333 378
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 150 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--- 150 (292)
+|+|++|||++.+..+ .++.++|+|+||+|||| |||+|++| +||||+||+||+||||+||+|||+
T Consensus 146 ~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~y~ 213 (389)
T PLN02886 146 WLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNLYG 213 (389)
T ss_pred HHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhhcc
Confidence 9999999999877654 35689999999999999 99999996 899999999999999999999985
Q ss_pred ---------------CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHH
Q 022791 151 ---------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRK 210 (292)
Q Consensus 151 ---------------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~ 210 (292)
++|..+. +++||||+||++|||||+|+ |+|+|+|+|++|++||++ |+||+...++ ++
T Consensus 214 ~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~--~~ 290 (389)
T PLN02886 214 GRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE--FD 290 (389)
T ss_pred ccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--CC
Confidence 3565554 46899999988899999985 899999999999999999 9999986543 56
Q ss_pred hCCCccccccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 211 LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 211 ~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
.+++|+++|++.+|..+ ++.++++++++|. ++++++||+.|+++|+++|+|||+||+++.++ +|+++|..+
T Consensus 291 ~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~G 363 (389)
T PLN02886 291 NPERPECNNLLSIYQLV--TGKTKEEVLAECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEG 363 (389)
T ss_pred CCCCcccccHHHHHHHc--cCCCHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 77899999999999988 4678999999996 37999999999999999999999999999876 899999876
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-66 Score=483.34 Aligned_cols=258 Identities=17% Similarity=0.235 Sum_probs=229.4
Q ss_pred hHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHhhh
Q 022791 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK 77 (292)
Q Consensus 5 ~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r 77 (292)
|+|+.+|+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++| |.+. .+++|+|
T Consensus 30 ~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R 108 (332)
T PRK12556 30 QMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNR 108 (332)
T ss_pred HHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchHHHHHHHHHHccchHHHHHh
Confidence 3888889888888999999985 489999999999999999999999999999999999987 3333 3799999
Q ss_pred heeecceeecc-----ccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC---
Q 022791 78 CVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 149 (292)
Q Consensus 78 ~~t~~~~~~~~-----g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--- 149 (292)
++|||++.... |+.++.++|+++||+|||| |||.|++| +||||+||+||+||||++|+|||
T Consensus 109 ~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~d---~VpvG~DQ~qhleLtRdiA~rfn~~y 177 (332)
T PRK12556 109 AHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQAT---HVPVGKDQIQHIEIARDIATYFNHTF 177 (332)
T ss_pred ccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccCC---EEEeccccHHHHHHHHHHHHHHHHhc
Confidence 99999886532 2345679999999999999 99999995 89999999999999999999999
Q ss_pred ---CCCccch---hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchh
Q 022791 150 ---YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223 (292)
Q Consensus 150 ---~~~p~~l---~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 223 (292)
+++|..+ +++++|||+| +|||||++| +|+|+|+|++|++||++ |+||+... +.+++|+++|+++|
T Consensus 178 g~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~~-----~~~~~p~~~~l~~i 248 (332)
T PRK12556 178 GDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSLP-----NEPKDPETSALFTI 248 (332)
T ss_pred cccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCcc-----cCCCCcchhHHHHH
Confidence 5778666 5899999998 699999975 89999999999999999 99998642 35789999999999
Q ss_pred hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 224 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 224 l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
+++|.+ ++++++++++|.+ +++|++||+.||+.|+++|+|||+||+++.++ +|+++|..|
T Consensus 249 ~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G 310 (332)
T PRK12556 249 YKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKG 310 (332)
T ss_pred HHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999863 3679999999986 69999999999999999999999999999976 899999876
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=4.7e-66 Score=483.32 Aligned_cols=263 Identities=27% Similarity=0.367 Sum_probs=233.7
Q ss_pred hHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhHh---HHHhhh
Q 022791 5 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYKN---MVKVAK 77 (292)
Q Consensus 5 ~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~~---~~~l~r 77 (292)
|||++ |+ ++|+||||||+|++..+++++++++++++++|+|||+||+|++||.||+|++| |+|.+ +.++.|
T Consensus 29 ~lQ~~-~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r 106 (333)
T PRK12282 29 ALQNE-HE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLER 106 (333)
T ss_pred HHHhC-CC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchHHHHHHHHHHhhchHHHHhh
Confidence 69997 44 68888999999974589999999999999999999999999999999999886 66664 679999
Q ss_pred heeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC--CCccc
Q 022791 78 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPAL 155 (292)
Q Consensus 78 ~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--~~p~~ 155 (292)
+++++++....|+.++.++|+++||+|||| |||.+++| +||||+||+||+||||++|+|||+ .+|..
T Consensus 107 ~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~d---~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~ 175 (333)
T PRK12282 107 NPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKAT---LVPVGDDQLPMIEQTREIVRRFNSLYGTDVL 175 (333)
T ss_pred chHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCCC---EEEeccccHHHHHHHHHHHHHHhhhcCCccc
Confidence 999998766555567889999999999999 99999995 899999999999999999999993 33332
Q ss_pred h-------hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc
Q 022791 156 I-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL 228 (292)
Q Consensus 156 l-------~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 228 (292)
+ .+++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+.. .+++++++|+++++++|+++|.
T Consensus 176 ~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~~~~f~ 249 (333)
T PRK12282 176 VEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTYLDAFD 249 (333)
T ss_pred cCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHHHHHhC
Confidence 2 36899999985 899999975 99999999999999999 9999742 3477899999999999999996
Q ss_pred cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccC
Q 022791 229 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 286 (292)
Q Consensus 229 ~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~~ 286 (292)
++++++++++++|.+|+++|+|||+.||+.|+++|+|+|+||++++++ +|+++|..|.
T Consensus 250 ~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~ 309 (333)
T PRK12282 250 PDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS 309 (333)
T ss_pred CCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999876 8999998763
No 9
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-65 Score=487.81 Aligned_cols=259 Identities=18% Similarity=0.175 Sum_probs=225.3
Q ss_pred hh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791 4 KY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 74 (292)
Q Consensus 4 ~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 74 (292)
+| +|++.|+.++++||||||+|. ..+++.+++++++++++|+|||+||+|++||.||++++| |.+. .+++
T Consensus 26 ~~v~lq~q~~~~~~~~IADlHAlT~-~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~EL~wiL~~it~~g~ 104 (431)
T PRK12284 26 PAIAASRQPGVESFYFLADYHALIK-CDDPARIQRSTLEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGL 104 (431)
T ss_pred HHHHHHHhCCCcEEEEeechhhccC-CCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCcchhHHHHHHHHHhhhhHHH
Confidence 46 665557788888899999995 589999999999999999999999999999999999987 3333 3799
Q ss_pred hhhheeecceeecc---ccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC
Q 022791 75 VAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 149 (292)
Q Consensus 75 l~r~~t~~~~~~~~---g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n 149 (292)
|+|+++||++.... |+. ++.++|+|+||+|||| |||+|++| +||||.||+||+|||||||+|||
T Consensus 105 L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~rFN 173 (431)
T PRK12284 105 LNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQRFN 173 (431)
T ss_pred HHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHHHHh
Confidence 99999999875332 222 4579999999999999 99999996 89999999999999999999998
Q ss_pred C-------CCccchh---ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791 150 Y-------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 219 (292)
Q Consensus 150 ~-------~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~ 219 (292)
+ +.|..+. +++||||+| +|||||++ ++|+|+|+|++|++||++ |+||+..+. .+++|++||
T Consensus 174 ~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~~-----~~~~pe~sn 244 (431)
T PRK12284 174 HLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAPG-----EPKDTEGSA 244 (431)
T ss_pred hhcCCcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCCC-----CCCCCCcch
Confidence 4 3454433 589999998 69999996 599999999999999999 999987532 368899999
Q ss_pred cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
+++|+++|+. .+++++++++|..| ++|++||+.|++.|+++|+|||+||+++.++ +|+++|..+
T Consensus 245 Ll~i~~~~~~-~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~G 310 (431)
T PRK12284 245 LFQLYQAFAT-PEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAG 310 (431)
T ss_pred HHHHHHHhCC-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999952 46799999999844 9999999999999999999999999999986 899999876
No 10
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.2e-65 Score=475.43 Aligned_cols=264 Identities=36% Similarity=0.533 Sum_probs=229.2
Q ss_pred hhhHHhhcCcceEEEeecccccccccc-CHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchh----hhH---hHHH
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVK 74 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~ 74 (292)
.+++|+ .|+.++|+||||||+|+++. +++.++.++++++++|+|||+||+|++||.||+|++|+ .+. ++.+
T Consensus 26 ~~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e~~el~~~l~~~~t~~~ 104 (328)
T TIGR00233 26 TKWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPEHYELAWLLSCQVTFGE 104 (328)
T ss_pred HHHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHHHHHHHHHHHccCCHHH
Confidence 445775 59999999999999997532 88899999999999999999999999999999999762 222 3678
Q ss_pred hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC-----
Q 022791 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----- 149 (292)
Q Consensus 75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----- 149 (292)
+.|+++|++... .++.++|+|+||+|||| |||.+++| +||||+||+||+||||++|+|||
T Consensus 105 l~r~~~~k~k~~----~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n~~~~~ 169 (328)
T TIGR00233 105 LKRMTQFKDKSQ----AENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFNKKFKN 169 (328)
T ss_pred HHhccCcchhcc----CCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhhhhcCc
Confidence 888888877642 25679999999999999 99999997 79999999999999999999999
Q ss_pred -CCCccchhc---cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcc-cHHHHHHhCCCccccccchhh
Q 022791 150 -YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDIPVKYL 224 (292)
Q Consensus 150 -~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~-~~~~~~~~~~~p~~~~~~~~l 224 (292)
+++|..+++ +.||||+| +|||||+|||+|+|+|+|++|++||++ |+||++. +.+++++.+|+|.+++++.++
T Consensus 170 ~f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~i~~~~ 246 (328)
T TIGR00233 170 FFPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLVIYQYL 246 (328)
T ss_pred ccCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHHHHHHh
Confidence 688988875 45777776 699999999999999999999999999 9999873 444445567777777777887
Q ss_pred hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791 225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285 (292)
Q Consensus 225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~ 285 (292)
.++..+++++++++++|.+|+++|++||+.||++|+++|+|||+|++++.+++|++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g 307 (328)
T TIGR00233 247 SFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG 307 (328)
T ss_pred hccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776556789999999999999999999999999999999999999999999999999875
No 11
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-65 Score=479.03 Aligned_cols=265 Identities=18% Similarity=0.213 Sum_probs=228.9
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 74 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 74 (292)
+.+|++-+-+..++|+||||||+|++..+++.+++++++++++|+|||+||+|+.||.||++++| |++. .+++
T Consensus 24 ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~eh~eL~wil~~~t~~~~ 103 (398)
T PRK12283 24 LKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGW 103 (398)
T ss_pred HHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCchHHHHHHHHHHhhccHHH
Confidence 45784322255678888999999975469999999999999999999999999999999999987 3333 3799
Q ss_pred hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC----
Q 022791 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 150 (292)
Q Consensus 75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---- 150 (292)
|.|++|+|++..+.+..++.++|+++||+|||| |||+|+++ +||||+||+||+||||+||+|||.
T Consensus 104 L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a~---iVPVG~DQ~qHleLaRdIA~rfN~~yg~ 172 (398)
T PRK12283 104 LERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRAG---LVPVGEDQVPHVEMTREIARRFNHLYGR 172 (398)
T ss_pred HHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCCC---EeeeccccHHHHHHHHHHHHHHHHhcCc
Confidence 999999999876432235679999999999999 99999995 899999999999999999999875
Q ss_pred ------------------------------------------------------------------------CCccch--
Q 022791 151 ------------------------------------------------------------------------HKPALI-- 156 (292)
Q Consensus 151 ------------------------------------------------------------------------~~p~~l-- 156 (292)
+.|..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 252 (398)
T PRK12283 173 EPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQALLT 252 (398)
T ss_pred cccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCccccc
Confidence 233332
Q ss_pred hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHH
Q 022791 157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH 236 (292)
Q Consensus 157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee 236 (292)
.+++||||+| +|||||++ ++|+|+|+|++|++||++ |+||+.. +++..+|+|++||+++|+++|+ ++++.++
T Consensus 253 ~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~~~~ 324 (398)
T PRK12283 253 EASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEETKEW 324 (398)
T ss_pred CCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChHHHH
Confidence 2589999988 79999976 599999999999999999 9998753 4567789999999999999994 3446899
Q ss_pred HHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 237 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 237 l~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
+.++|++|+++|++||+.|++.|+++|+|||+|+.++.++ +|+++|.++
T Consensus 325 i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G 375 (398)
T PRK12283 325 VQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADG 375 (398)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876 899999875
No 12
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-64 Score=448.49 Aligned_cols=263 Identities=21% Similarity=0.302 Sum_probs=235.6
Q ss_pred hhh--HHhhcC--cceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---h
Q 022791 3 TKY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N 71 (292)
Q Consensus 3 ~~~--lQ~~~g--~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~ 71 (292)
..| ||+.++ ..+++.|+|+||+|. +.++..+|+++.++++.+||||+||+|+.+|+||++++| |.+. .
T Consensus 36 ~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~Vpqh~el~WlLsslt~ 114 (347)
T KOG2713|consen 36 KPWVQLQNEYDKNILVLFSVVDLHAITV-PQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDVPQHAELSWLLSSLTT 114 (347)
T ss_pred hHHHHHHHHhcCCceEEEEEeeceeecC-CCChHHHHHHHHHHHHHHHHhccCcccceeeeeccchHHHHHHHHHHhccc
Confidence 468 999754 456777799999998 577789999999999999999999999999999999987 4444 3
Q ss_pred HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-
Q 022791 72 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY- 150 (292)
Q Consensus 72 ~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~- 150 (292)
+++|+||++||++..+.+ .++.++|+|+||+|||| |||+|++ |+||||+||.||+||+|++|++||.
T Consensus 115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~ 182 (347)
T KOG2713|consen 115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT 182 (347)
T ss_pred hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence 899999999999997654 46789999999999999 9999999 5999999999999999999999995
Q ss_pred ------CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791 151 ------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 219 (292)
Q Consensus 151 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~ 219 (292)
|.|..+. +++|++|..|.+|||||+|| ++|+|+|+|+.|.+||+| |.||... +..|+++++|+++|
T Consensus 183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~--~vtYd~~~RpgvsN 259 (347)
T KOG2713|consen 183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTS--GVTYDPANRPGVSN 259 (347)
T ss_pred ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhccccc--ceeeCCccccchhH
Confidence 6776654 68999999999999999986 799999999999999999 9999654 34589999999999
Q ss_pred cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
++.+++.. ++.+.+|+.++++. ++++++|..||++|++.|+|||++++++..+ |+++++..+
T Consensus 260 Llni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~G 323 (347)
T KOG2713|consen 260 LLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEG 323 (347)
T ss_pred HHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHh
Confidence 99999998 56789999998874 8999999999999999999999999999986 999999876
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.4e-63 Score=463.09 Aligned_cols=249 Identities=25% Similarity=0.354 Sum_probs=224.7
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t 80 (292)
.++|||++ |+.++|+||||||+++++.+++.+++++++++++|+|||+||+|+.||.||+|++| .||..+..|++.++
T Consensus 53 ~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~ 131 (329)
T PRK08560 53 KLADLQKA-GFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTT 131 (329)
T ss_pred HHHHHHHC-CCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhcc
Confidence 35679994 99999999999999986589999999999999999999999999999999999977 68888999999999
Q ss_pred ecceeec---cccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccch
Q 022791 81 YNKVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 156 (292)
Q Consensus 81 ~~~~~~~---~g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l 156 (292)
+.++.+. +++. ++.++|+|+||+|||| |||.+++| +||||.||+||+++||++|+|||+++|.++
T Consensus 132 ~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l 200 (329)
T PRK08560 132 LARARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCI 200 (329)
T ss_pred HHHHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEE
Confidence 8888763 3332 3459999999999999 99999996 799999999999999999999999999999
Q ss_pred hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccC------
Q 022791 157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED------ 230 (292)
Q Consensus 157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~------ 230 (292)
++++||||+|+++|||||+|+++|+|+|+|++|++||++ ||||+ ++|+.+++++|++++...
T Consensus 201 ~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~-----------~~~~~n~v~~~~~~~~~~~~~~~~ 268 (329)
T PRK08560 201 HTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPP-----------GEVEGNPVLEIAKYHIFPRYDPFV 268 (329)
T ss_pred EcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCC-----------CCcCCCcHHHHHHHHhhccccceE
Confidence 999999999987799999998999999999999999999 99986 346677888998887532
Q ss_pred ------------hHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 231 ------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 231 ------------~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
++++++++++|.+|+++|++||+.||++|+++|+|||++|++-.
T Consensus 269 ~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 269 IERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred EechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 25789999999999999999999999999999999999998754
No 14
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.5e-60 Score=437.44 Aligned_cols=242 Identities=39% Similarity=0.584 Sum_probs=214.2
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 74 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 74 (292)
++.|||++ |+.++|+|||+||+|++..+++++++++++++++|+|||+||+|++||.||++++| |.+. ++.+
T Consensus 23 ~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~~l~~~l~~~~~~~~ 101 (280)
T cd00806 23 FWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGE 101 (280)
T ss_pred HHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHHHHHHHHHhCcCCHHH
Confidence 35679996 99999999999999975359999999999999999999999999999999999876 2222 3678
Q ss_pred hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC-----
Q 022791 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----- 149 (292)
Q Consensus 75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----- 149 (292)
+.|+++|+++.+. .++.++|+++||+|||| |||.+++ |+||||.||+||+|+||++|+|||
T Consensus 102 l~r~~~fk~~~~~---~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~ 167 (280)
T cd00806 102 LERMTGFKDKSAQ---GESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRFNKLYGE 167 (280)
T ss_pred HHhccchhhhhcc---CCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHhcccccc
Confidence 8888888776542 35789999999999999 9999998 589999999999999999999999
Q ss_pred -CCCccchhc--cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791 150 -YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 226 (292)
Q Consensus 150 -~~~p~~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 226 (292)
+++|..+++ ++||||+|+++|||||+|+|+|+|+|+|++|++||++ |+||+..+ ++++.+++|+++++++||++
T Consensus 168 ~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l~~~~~~ 244 (280)
T cd00806 168 IFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNLVEIYSA 244 (280)
T ss_pred ccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChHHHHHHH
Confidence 789999888 9999999987899999998899999999999999999 99999864 56889999999999999998
Q ss_pred hcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHH
Q 022791 227 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 262 (292)
Q Consensus 227 ~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~ 262 (292)
|.. +.++++++ .+|..|++++++||+.||+.|+++
T Consensus 245 ~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 245 FFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred HhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 753 44556666 899999999999999999999863
No 15
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.2e-59 Score=441.45 Aligned_cols=247 Identities=20% Similarity=0.292 Sum_probs=212.4
Q ss_pred hhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch--hhhHhHHHhhhh
Q 022791 4 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC 78 (292)
Q Consensus 4 ~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~ 78 (292)
.+||++ |+.++|+||||||+++++ .+++.++++++++++.|+|||+||+|+.||.||+| ++| .||..+..+++.
T Consensus 92 ~~lq~~-G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~ 170 (383)
T PTZ00126 92 NKLTKA-GCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARS 170 (383)
T ss_pred HHHHhC-CCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhcc
Confidence 349985 999999999999999865 69999999999999999999999999999999984 455 578888889888
Q ss_pred eeecceeec---cccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-CC
Q 022791 79 VTYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HK 152 (292)
Q Consensus 79 ~t~~~~~~~---~g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-~~ 152 (292)
+|++++++. +++. ++.++|+|+||+|||| ||+.+++| +||||.||+||++|||++|++||+ ++
T Consensus 171 ~tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~ 239 (383)
T PTZ00126 171 FNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKK 239 (383)
T ss_pred CCHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCC
Confidence 888887643 2332 3568999999999999 99999997 799999999999999999999995 68
Q ss_pred ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhh-----
Q 022791 153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF----- 227 (292)
Q Consensus 153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~----- 227 (292)
|.++++++||||+++++|||||+||++|+|+|+|++|++|||+ |||+++.. ++|| ++.|+.++
T Consensus 240 ~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~~~~~~ 307 (383)
T PTZ00126 240 PIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSIVFPAF 307 (383)
T ss_pred ceeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhcccccc
Confidence 8888999999997556899999999999999999999999999 99987532 3344 55555542
Q ss_pred ---c-c---------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 228 ---L-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 228 ---~-~---------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
. . ++.++++++++|.+|+++|++||++||++|+++|+|||++|+.-.
T Consensus 308 ~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~~ 367 (383)
T PTZ00126 308 NSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNNP 367 (383)
T ss_pred cceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 1 0 235899999999999999999999999999999999999998543
No 16
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-56 Score=444.23 Aligned_cols=253 Identities=18% Similarity=0.251 Sum_probs=215.2
Q ss_pred cCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCc-ccch--hhhHhHHHhhhheeecce
Q 022791 10 FKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD-YVGG--AFYKNMVKVAKCVTYNKV 84 (292)
Q Consensus 10 ~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~-~~~~--~~~~~~~~l~r~~t~~~~ 84 (292)
.|+.++++||||||+|+++ .+++.++.+++++++.|+|||+||+|+.||.||+ +++| .||..+..+++.+|+.+.
T Consensus 63 ~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~ 142 (682)
T PTZ00348 63 AGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARI 142 (682)
T ss_pred CCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 3888999999999999643 5889999999999999999999999999999997 6666 567666666666666655
Q ss_pred eec---cccCC-CCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-CCccchhcc
Q 022791 85 VGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESS 159 (292)
Q Consensus 85 ~~~---~g~~~-~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~-~~p~~l~~~ 159 (292)
++. +|+.+ +.++|+++||+|||| |||.+++| +||||.||+||+||||++|++||. ++|.+++++
T Consensus 143 K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~ 211 (682)
T PTZ00348 143 KKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHH 211 (682)
T ss_pred HHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccc
Confidence 543 44433 479999999999999 99999997 799999999999999999999995 578888899
Q ss_pred ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCc----cccccchhhhhhcc------
Q 022791 160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE------ 229 (292)
Q Consensus 160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p----~~~~~~~~l~~~~~------ 229 (292)
+||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||+..........+|+| +.+++++|++++..
T Consensus 212 ~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~ 290 (682)
T PTZ00348 212 MLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAV 290 (682)
T ss_pred cCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchh
Confidence 999999767899999998899999999999999999 9999853111123457788 77899999888631
Q ss_pred ------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 230 ------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 230 ------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
.++++++++++|.+|+++|++||++|+++|+++|+|||++|++-.
T Consensus 291 ~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 291 ATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred cccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 126799999999999999999999999999999999999998664
No 17
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=3.7e-53 Score=391.11 Aligned_cols=247 Identities=30% Similarity=0.445 Sum_probs=216.9
Q ss_pred chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhh--hhhccCCCCceeEecCCcccch-hh---hHh--
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGFDVTKTFIFSDFDYVGG-AF---YKN-- 71 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~--~lA~Gldp~k~~i~~qs~~~~~-~~---~~~-- 71 (292)
.+.|||+ .|+.++|+||||||+++++ .+++.++.+.++++.. ++|+|+||+++.||.||+|.++ .+ +.+
T Consensus 28 ~~~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~ 106 (292)
T PF00579_consen 28 KLIWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSDWPEHMELWWFLSDVA 106 (292)
T ss_dssp HHHHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCCcccccchhhhhcccc
Confidence 4678999 5999999999999999865 3799999999999999 9999999999999999999876 22 222
Q ss_pred -HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC
Q 022791 72 -MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 150 (292)
Q Consensus 72 -~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~ 150 (292)
..+++|+.++++++++++..++.++|+++||+|||| ||+.+++| +||||.||++|+++||++|+|+|+
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~ 175 (292)
T PF00579_consen 107 RLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNY 175 (292)
T ss_dssp BHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTH
T ss_pred cccchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcc
Confidence 577888999988777665446789999999999999 99999997 799999999999999999999999
Q ss_pred C----CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc-cchhhh
Q 022791 151 H----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLS 225 (292)
Q Consensus 151 ~----~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~-~~~~l~ 225 (292)
. +|.+++++++|||+|. +|||||+|||+|||+|++++|++||++ |+|++.. +..+..+++|.+++ ++.++.
T Consensus 176 ~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~ 251 (292)
T PF00579_consen 176 KEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLE 251 (292)
T ss_dssp HSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHH
Confidence 7 9999999999999994 599999999999999999999999999 9999987 44566778888888 788887
Q ss_pred hhccCh--HHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH
Q 022791 226 FFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264 (292)
Q Consensus 226 ~~~~~~--~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~ 264 (292)
.+..+. .+++++.++|.+|.+|++++|++++++++++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 252 AFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 765322 368999999999999999999999999999985
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.6e-52 Score=380.26 Aligned_cols=227 Identities=23% Similarity=0.277 Sum_probs=200.7
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccchhhhH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYK 70 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~ 70 (292)
.++|||++ |+.++|+|||+||+++++ .+++++++|+++++++|+|+|+| |+|+.||.||+|++|.+|.
T Consensus 24 ~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k~~i~~~s~~~~~l~~~ 102 (269)
T cd00805 24 KLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTL 102 (269)
T ss_pred HHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcceEEEEchHhhccCCHH
Confidence 46789996 999999999999999765 79999999999999999999997 9999999999999887787
Q ss_pred hHHHhhhheeecceeecccc------CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCcccccccc
Q 022791 71 NMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 144 (292)
Q Consensus 71 ~~~~l~r~~t~~~~~~~~g~------~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~i 144 (292)
.++++++.++++++.+..++ .++.++|+|+||+|||| ||+.++++ +||||.||++|++++|++
T Consensus 103 ~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~~---l~~~G~DQ~~~i~~~rd~ 171 (269)
T cd00805 103 DFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDVD---LQLGGSDQRGNITLGRDL 171 (269)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhCC---eeEecHHHHHHHHHHHHH
Confidence 77778888888777765432 35679999999999999 99999984 899999999999999999
Q ss_pred CcccCCCCccchhccccccccCCcccccccCCCce-eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchh
Q 022791 145 APRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 223 (292)
Q Consensus 145 a~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~-I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 223 (292)
|+|||+.+|..+++++||||+| +|||||.+|+. |++.|+|++|++||++ |+|+ ++++++.+
T Consensus 172 a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~---------------~v~~~l~~ 233 (269)
T cd00805 172 IRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP---------------DVLEFLKL 233 (269)
T ss_pred HHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH---------------HHHHHHHH
Confidence 9999999999999999999999 69999999866 7999999999999999 9996 13444444
Q ss_pred hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHH
Q 022791 224 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 261 (292)
Q Consensus 224 l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~ 261 (292)
+.++ ++++++|++++|.+|.+ ++++|+.||+.|++
T Consensus 234 ~~~~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~ 268 (269)
T cd00805 234 FTFL--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK 268 (269)
T ss_pred HHcC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence 4444 67899999999998877 99999999999986
No 19
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-48 Score=356.32 Aligned_cols=230 Identities=18% Similarity=0.183 Sum_probs=187.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccch-hhh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGG-AFY 69 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~-~~~ 69 (292)
+++|||+ +|+.++++|||+||+++++ . +++++++|+++++++++|+|+| |+|++||.||+|+.. .++
T Consensus 23 ~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~ 101 (273)
T cd00395 23 TFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHI 101 (273)
T ss_pred HHHHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcceEEEEccccCCcccHH
Confidence 5678999 4999999999999999753 2 8999999999999999999999 999999999999842 333
Q ss_pred HhHHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccc-cccccccCCCcccccccc
Q 022791 70 KNMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDV 144 (292)
Q Consensus 70 ~~~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~h~elaR~i 144 (292)
..+..+++.+++.++.+..++ .++.++|+|+||+|||| ||+.++++.+| +||||.||+||+++|||+
T Consensus 102 ~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdl 173 (273)
T cd00395 102 QFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGREL 173 (273)
T ss_pred HHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHH
Confidence 333344444444444443322 14689999999999999 89988874555 999999999999999999
Q ss_pred CcccC-CCCccchhccccccccCCcccccccCCCce--eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccc
Q 022791 145 APRIG-YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 221 (292)
Q Consensus 145 a~r~n-~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~ 221 (292)
|+|+| +++|..+++|+||||+| .|||||++|+. |+++|+|++|++||++ |+ .++++
T Consensus 174 a~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~ 232 (273)
T cd00395 174 ARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVI 232 (273)
T ss_pred HHHhCCCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHH
Confidence 99997 57898999999999999 49999998753 4479999999999999 86 25567
Q ss_pred hhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHH
Q 022791 222 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 262 (292)
Q Consensus 222 ~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~ 262 (292)
.|+++|+. +.+++++|++++.+|. +++++|+.||+.|+++
T Consensus 233 ~~~~~~t~~~~~ei~~i~~~~~~~~-~~~~~K~~La~~i~~~ 273 (273)
T cd00395 233 NILKYFTFLSKEEIERLEQEQYEAP-GYRVAQKTLAEEVTKT 273 (273)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 88887753 5677777777776663 7799999999999863
No 20
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-46 Score=335.77 Aligned_cols=249 Identities=21% Similarity=0.231 Sum_probs=205.3
Q ss_pred HHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhh----hccCCCCceeEecCCcccch-hhhHhHHHhhhhe
Q 022791 6 LQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDII----ACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCV 79 (292)
Q Consensus 6 lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~l----A~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~ 79 (292)
+-. +||.|.|++|||||+++|. .+++.+..++.++-..+. ..+++.++.-+...|++... .|-..+.++++.+
T Consensus 61 flk-AGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~ 139 (360)
T KOG2144|consen 61 FLK-AGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNV 139 (360)
T ss_pred HHh-cCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhc
Confidence 334 4999999999999999876 788888877765544333 34556666644455666533 5566799999999
Q ss_pred eecceeecc--c--cCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccc
Q 022791 80 TYNKVVGIF--G--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 155 (292)
Q Consensus 80 t~~~~~~~~--g--~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~ 155 (292)
|-++.++.. + ..++..++.++||.|||+ |++.+++| .+++|.|||+.+.+||++++.+|+++|.+
T Consensus 140 ~~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrih 208 (360)
T KOG2144|consen 140 TQHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIH 208 (360)
T ss_pred cHhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCccccee
Confidence 998887652 2 246678899999999999 78888888 47999999999999999999999999999
Q ss_pred hhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc----ccchhhhhhcc--
Q 022791 156 IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFFLE-- 229 (292)
Q Consensus 156 l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~~~-- 229 (292)
+++||+|||++ ++|||||+|+|.|+|.|+|++|.+||+| |||.|+.. ++|++.+ ++|+++..+..
T Consensus 209 LmnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~ 279 (360)
T KOG2144|consen 209 LMNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEV 279 (360)
T ss_pred ecCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCcee
Confidence 99999999996 4899999999999999999999999999 99998753 5777765 34555543321
Q ss_pred -----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791 230 -----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 275 (292)
Q Consensus 230 -----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~ 275 (292)
++.++|+++++|.+|++||+|||+.|+.+|+++|+|||+.++..-+
T Consensus 280 i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 280 IDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred ecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3689999999999999999999999999999999999999988554
No 21
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-44 Score=362.54 Aligned_cols=244 Identities=14% Similarity=0.158 Sum_probs=210.7
Q ss_pred hhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCccc-ch--hhhHhHHHhhhh
Q 022791 4 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKC 78 (292)
Q Consensus 4 ~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r~ 78 (292)
.+|+...||.++|++|||||+++++ +++++|++.++++++.|.|+|+|++ +.+..+|+.. .+ .||..+++++|.
T Consensus 400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~ 478 (682)
T PTZ00348 400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK 478 (682)
T ss_pred HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence 4578878999999999999999877 8999999999999999999999999 8555555543 43 899999999999
Q ss_pred eeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhc
Q 022791 79 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 158 (292)
Q Consensus 79 ~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~ 158 (292)
+|++++++++| .+..++|+++||+||++ ||+.+++| ++.+|+|||+.++||||++++.+. |..+++
T Consensus 479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~~--~~~~~~ 544 (682)
T PTZ00348 479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRIE--CIQALE 544 (682)
T ss_pred ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhcccccc--chhhcC
Confidence 99999999986 45568999999999999 99999998 589999999999999999996543 455778
Q ss_pred cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---c------
Q 022791 159 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---E------ 229 (292)
Q Consensus 159 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---~------ 229 (292)
+++|||.+|..+|++|+++|+||+.|++++|++||++ |||+++. ++||.++.+-.++.++. .
T Consensus 545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~i~R~e~~ 615 (682)
T PTZ00348 545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALSIERGEAN 615 (682)
T ss_pred CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999777899999889999999999999999999 9999842 46887764322222111 0
Q ss_pred ----ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791 230 ----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 271 (292)
Q Consensus 230 ----~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~ 271 (292)
.+.+++||+++|.+|.+||+|||.+++++|+++|+|+|++++
T Consensus 616 Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 616 GGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999997
No 22
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=8e-44 Score=341.77 Aligned_cols=237 Identities=21% Similarity=0.207 Sum_probs=192.3
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCc--eeEecCCcccchhhhH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYK 70 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k--~~i~~qs~~~~~~~~~ 70 (292)
+++|||+. |+.++++||||||+++++ .+.+++++|+..+ ...+|+|+||++ +.||.||+|+++..+.
T Consensus 57 ~l~~lQ~~-G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~ 134 (408)
T PRK05912 57 KLRRFQDA-GHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAI 134 (408)
T ss_pred HHHHHHHC-CCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHH
Confidence 57789995 999999999999999743 3778899999765 556699999999 9999999999873333
Q ss_pred hHHH-hhhheeecce------eeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCccc
Q 022791 71 NMVK-VAKCVTYNKV------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR 139 (292)
Q Consensus 71 ~~~~-l~r~~t~~~~------~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~e 139 (292)
.+++ +++.++++++ +.+++..++.++|+|+||+|||| |++.+ +++ ++|||.||++|++
T Consensus 135 ~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~ 203 (408)
T PRK05912 135 DFLRDLGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNIL 203 (408)
T ss_pred HHHHHHhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHH
Confidence 3333 4444444444 33333235789999999999999 88888 775 7999999999999
Q ss_pred cccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCcc
Q 022791 140 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE 216 (292)
Q Consensus 140 laR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~ 216 (292)
++||+|+|+|..++..++.|+|||++| +|||||. +++|||+| ||+++++||++ + + +++
T Consensus 204 ~grdla~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~ 264 (408)
T PRK05912 204 SGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DAD 264 (408)
T ss_pred HHHHHHHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHH
Confidence 999999999987778888999999998 7999998 56999999 99999999999 5 1 233
Q ss_pred ccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 217 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 217 ~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
++ .|+.+|+. +.+++++++++|.+|. +++++|+.||+.|+++++...+..+...
T Consensus 265 v~---~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~~ 319 (408)
T PRK05912 265 VW---RYLKLLTFLSLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAEE 319 (408)
T ss_pred HH---HHHHHHhcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 44 45555542 6788999999998887 9999999999999999999776655443
No 23
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-43 Score=336.03 Aligned_cols=239 Identities=20% Similarity=0.182 Sum_probs=199.4
Q ss_pred CchhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHh
Q 022791 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 71 (292)
Q Consensus 1 ~~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~ 71 (292)
++++|||++ |+.++|+|||+||+++++ .+.+++++|+..+.+++.+ |+||+++.|+.||+|.++..+..
T Consensus 56 ~~l~~lq~~-G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~ 133 (410)
T PRK13354 56 MKLKRFQDA-GHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLID 133 (410)
T ss_pred HHHHHHHHc-CCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHH
Confidence 357889995 999999999999999753 5778999999988888777 99999999999999987633333
Q ss_pred -------HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcccc
Q 022791 72 -------MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM 140 (292)
Q Consensus 72 -------~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~el 140 (292)
.+.+++|.++++++.+++..++.++|+|+||+|||+ |++.+ +++ ++|||.||++|+++
T Consensus 134 ~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~ 202 (410)
T PRK13354 134 FLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILM 202 (410)
T ss_pred HHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHH
Confidence 345555555555554443345678899999999999 88888 775 78999999999999
Q ss_pred ccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCC---HHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791 141 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEV 217 (292)
Q Consensus 141 aR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~ 217 (292)
+||+++|+|..+|..++.|+|+|++| .|||||.+| +|||+|+ |+++++||++ + |+
T Consensus 203 grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D- 260 (410)
T PRK13354 203 GRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSAGG-AIWLDPEKTSPYEFYQFWMN-I-----------------DD- 260 (410)
T ss_pred HHHHHHHhCCCCceEeccCCccCCCC--CccCCCCCC-ceeccCCCCCHHHHHHHHHc-C-----------------Ch-
Confidence 99999999999998899999999999 499999864 9999999 9999999999 4 11
Q ss_pred cccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791 218 DIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 275 (292)
Q Consensus 218 ~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~ 275 (292)
+.++.|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+....
T Consensus 261 ~~v~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~~ 318 (410)
T PRK13354 261 RDVVKYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEKI 318 (410)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 334788888864 6789999999999874 59999999999999999998887665543
No 24
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=7e-36 Score=284.23 Aligned_cols=217 Identities=22% Similarity=0.175 Sum_probs=180.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKN 71 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~ 71 (292)
.++|||++ |+.++|+|||+||+++++ .+.+++++|+ +.++.++|+|+||+++.|+.||+|... .|+..
T Consensus 54 ~l~~lq~~-G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~ 131 (377)
T TIGR00234 54 KLRDFQQA-GHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDF 131 (377)
T ss_pred HHHHHHHC-CCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHH
Confidence 46789995 999999999999999864 4566677777 678899999999999999999999754 57777
Q ss_pred HHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcc
Q 022791 72 MVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 147 (292)
Q Consensus 72 ~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r 147 (292)
+..+++.+|++++.++.++ .++.++++|+||+|||+ |++.+++| ++|||.||++|++.+|++|+|
T Consensus 132 l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~ 200 (377)
T TIGR00234 132 IRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRR 200 (377)
T ss_pred HHHHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHH
Confidence 7778888888888877543 24689999999999999 99999997 799999999999999999999
Q ss_pred cCCCCccchhccccccccCCcccccccCC----------CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791 148 IGYHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 217 (292)
Q Consensus 148 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~----------~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~ 217 (292)
+|...+..+..+++++++| .|||||.+ +++||+.|+|+++.+||++ |+|+...
T Consensus 201 ~~~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~~-------------- 263 (377)
T TIGR00234 201 NLPSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLGL-------------- 263 (377)
T ss_pred hcCCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCcH--------------
Confidence 9977777788899999997 79999942 3788888889999999999 9997532
Q ss_pred cccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHH
Q 022791 218 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265 (292)
Q Consensus 218 ~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~p 265 (292)
+++++|.+ ..+ -++.+.|+.+|..|++.++.
T Consensus 264 --------------~ei~~l~~--~~~-~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 264 --------------EEIEALVE--LKG-PSPREVKENLAKEITKYVHG 294 (377)
T ss_pred --------------HHHHHHHH--hcc-cCHHHHHHHHHHHHHHHhcC
Confidence 34555544 222 47888999999888888864
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.5e-30 Score=243.97 Aligned_cols=241 Identities=22% Similarity=0.204 Sum_probs=186.6
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHH----hchhhhh-hccCCCC-ceeEecCCcccch-hhhHhHH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGG-AFYKNMV 73 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~----~~~~~~l-A~Gldp~-k~~i~~qs~~~~~-~~~~~~~ 73 (292)
.+++||++ |+.++++|||+||+++++ ...++.+..+. ++++.+. ++|.+++ ++.+..+|+|... .|+..+.
T Consensus 56 kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~ 134 (401)
T COG0162 56 KLRRFQDA-GHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLR 134 (401)
T ss_pred HHHHHHHC-CCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHH
Confidence 57889995 999999999999999987 77777777665 4444443 6787777 8988899999754 7888888
Q ss_pred Hhhhheeecceeeccc------cCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcc
Q 022791 74 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 147 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g------~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r 147 (292)
++++++|++++.++.. ..+++++.+|+||+|||+ |++.++.| +..+|.|||.++.++||+++|
T Consensus 135 ~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr 203 (401)
T COG0162 135 DVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRR 203 (401)
T ss_pred HHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHH
Confidence 8888888888877532 224589999999999999 89999998 689999999999999999999
Q ss_pred cCCCCccchhccccccccCCcccccccCCC---------ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc
Q 022791 148 IGYHKPALIESSFFPALQGETGKMSASDPN---------SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 218 (292)
Q Consensus 148 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~---------s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~ 218 (292)
+|++++.++++|+|+|++| +|||||..+ |.|.+.+.+..|..|+++ +||
T Consensus 204 ~g~~~~~~lt~PLL~~ldG--~KmgKs~~~a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~------------------- 261 (401)
T COG0162 204 LGQKKVVGLTTPLLTGLDG--KKMGKSEGGAVWLDSEKTSPYDFYQYWMNIEDADVK-RFL------------------- 261 (401)
T ss_pred hCCCCeEEEEeccccCCCC--CcccccCCCceEccCCCCCcHhhhhcHhcCcHHHHH-HHH-------------------
Confidence 9999999999999999999 488888654 344444455555555555 544
Q ss_pred ccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791 219 IPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285 (292)
Q Consensus 219 ~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~ 285 (292)
..++. +.+++++|.+....+. ++.++|+.||..++...++-...++... ..++.+..+
T Consensus 262 ------~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~~--~~~~~F~~g 320 (401)
T COG0162 262 ------KLLTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAEE--EFEKLFSEG 320 (401)
T ss_pred ------HHhCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHHH--HHHHHHhcC
Confidence 33321 2267888888777665 8889999999999999887665555444 355555554
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.7e-12 Score=121.19 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=157.7
Q ss_pred hhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHh---chhhhh-------hccCCCCceeEecCCcc
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARE---NAKDII-------ACGFDVTKTFIFSDFDY 63 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~---~~~~~l-------A~Gldp~k~~i~~qs~~ 63 (292)
+=|+|.+ |+.++-+|++.+|-++++ ...+.+++|++. .+..+. -+|..-.+-+|+.+++|
T Consensus 88 L~hfqr~-Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW 166 (467)
T KOG2623|consen 88 LIHFQRA-GHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDW 166 (467)
T ss_pred HHHHHHc-CCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHH
Confidence 3478885 999999999999999754 223345556542 222222 23433345588888887
Q ss_pred cch----hhhHhH---HHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCccc-ccccccccCC
Q 022791 64 VGG----AFYKNM---VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR-CLIPCAIDQD 135 (292)
Q Consensus 64 ~~~----~~~~~~---~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~-~~vpvG~DQ~ 135 (292)
-+. .|+..+ +++..|.....++.++.-.++.++.+|+|-+|||. |.+.+-.... |++.+|.||+
T Consensus 167 ~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGsDQw 238 (467)
T KOG2623|consen 167 YKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGSDQW 238 (467)
T ss_pred hhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEecccccc
Confidence 542 455554 66777777777777766567789999999999999 6653222222 4899999999
Q ss_pred CccccccccCcccCC--CCccchhccccccccCCcccccccCCCceeEecCC---HHHHHHHhhhccccCCcccHHHHHH
Q 022791 136 PYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRK 210 (292)
Q Consensus 136 ~h~elaR~ia~r~n~--~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~I~kKI~k~A~t~~~~~~~~~~~ 210 (292)
.|+..+-|+.+|+-. ..+..+..|+|.+-+| .|..||..| +|||.-+ |-.+++-.-+ +
T Consensus 239 GNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~------------- 301 (467)
T KOG2623|consen 239 GNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-L------------- 301 (467)
T ss_pred cccchHHHHHHHhcccccceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-C-------------
Confidence 999999999988764 3456677899999888 799999987 9999754 7777777666 3
Q ss_pred hCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHH
Q 022791 211 LGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 265 (292)
Q Consensus 211 ~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~p 265 (292)
|+.+ +-.+|..|+. +-+++++|.+...+. -...-.-+.||+.|..+++.
T Consensus 302 ----pDd~-v~k~LklfTfl~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG 351 (467)
T KOG2623|consen 302 ----PDDD-VEKFLKLFTFLPLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG 351 (467)
T ss_pred ----chhH-HHHHHHHHhcCCHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence 2111 1244554432 445677776666532 34445667788888888765
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.87 E-value=1.2e-09 Score=98.11 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=108.7
Q ss_pred hhhHHh-hcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCcee-------EecCCcccchhhhHhHHH
Q 022791 3 TKYLQD-AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGGAFYKNMVK 74 (292)
Q Consensus 3 ~~~lQ~-~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~~~~~~~~~ 74 (292)
..|+.- +.|..+++-|.| |+ ......++...+.+++..+|+++++.. +|.||+-. ..|..-+-+
T Consensus 24 ~n~l~ar~~~G~~ilRieD----td---~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~-~~y~~~~~~ 95 (239)
T cd00808 24 FNYLFARKHGGKFILRIED----TD---QERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERL-EIYRKYAEK 95 (239)
T ss_pred HHHHHHHHcCCeEEEEECc----CC---CCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCH-HHHHHHHHH
Confidence 456322 256667777788 43 122344556666777778899999854 78898642 233333333
Q ss_pred hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCcc
Q 022791 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 154 (292)
Q Consensus 75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~ 154 (292)
|... | -|..+|++.+++ |....+. |+|+.|.|+..|...-+.+++.||.+.|.
T Consensus 96 L~~~----------g------dg~ptY~~a~~v--------DD~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~ 148 (239)
T cd00808 96 LLEK----------G------DGFPTYHLANVV--------DDHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPK 148 (239)
T ss_pred HHHc----------C------CCCcccccHHHH--------hHHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCc
Confidence 3211 1 378899999999 6666676 59999999999999999999999999998
Q ss_pred chhccccccccCCcccccccCCCceeEec----CCHHHHHHHhhh
Q 022791 155 LIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 195 (292)
Q Consensus 155 ~l~~~~lpgL~g~~~KMSkS~~~s~I~L~----D~~~~I~kKI~k 195 (292)
..+.+++++.+| .||||+..+.+|.-. -+|+.|..-+..
T Consensus 149 ~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 149 FAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred eEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 888899999988 799999875333222 236666655544
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.61 E-value=1.3e-09 Score=90.28 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=55.8
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-CccchhccccccccCCcccccccC
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 175 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-~p~~l~~~~lpgL~g~~~KMSkS~ 175 (292)
||+.|+| |++.+.....+++++|.||.+|++..+++++++|.+ +|.+++.++|++.+| +|||||.
T Consensus 78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999 777666633358999999999999999999999864 688888999999886 7999984
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.90 E-value=1.3e-05 Score=71.76 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=99.4
Q ss_pred hhh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791 3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY 81 (292)
Q Consensus 3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~ 81 (292)
..| +-.++|..+++-|=| |+ ...........++.++..+|++.+.- ++.||+-. ..|...+-+|...
T Consensus 24 ~n~l~Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~-~~y~~~~~~L~~~--- 91 (230)
T cd00418 24 FNFAFARKYGGKFILRIED----TD---PERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRF-DLYRAYAEELIKK--- 91 (230)
T ss_pred HHHHHHHHcCCeEEEEeCc----CC---CCCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCH-HHHHHHHHHHHHc---
Confidence 455 333467777777666 22 11223455566777777899999864 56788653 2333333333221
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 161 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l 161 (292)
+ .||..+-|- .++|.+. +. |+|.-|.|+..+-..-+.+++.+|.++|...+.|+|
T Consensus 92 -----------g------g~p~Y~la~----vvDD~~~-gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll 146 (230)
T cd00418 92 -----------G------GYPLYNFVH----PVDDALM-GI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRL 146 (230)
T ss_pred -----------C------CCccccccc----ccccccc-CC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeee
Confidence 1 455555542 2336654 33 699999999999999999999999999999999999
Q ss_pred ccccCCcccccccCCCceeEec----CCHHHHHHHhhh
Q 022791 162 PALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 195 (292)
Q Consensus 162 pgL~g~~~KMSkS~~~s~I~L~----D~~~~I~kKI~k 195 (292)
.+.+| +|||||+.+.+|.-. -.|+.|..-+..
T Consensus 147 ~~~~g--~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 147 LLEDG--TKLSKRKLNTTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred eCCCC--CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence 99887 799999865333221 235555544443
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.61 E-value=4.3e-05 Score=76.13 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=47.2
Q ss_pred cccccccCCC-ccccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+.|.|.||.. +..+++.+++ .+|.+.|..+...++..-+| +|||||.+| .|.+.|
T Consensus 237 ~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 237 FEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred EEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 6899999999 9999999999 99998898877777776555 799999976 777654
No 31
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0012 Score=63.68 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhcCC---CcccHHHHH-----HHHHHHHHHHHHHHHHHhhhhH
Q 022791 231 DAELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAAVTD 275 (292)
Q Consensus 231 ~~~~eel~~~y~~g---~l~~~~lK~-----~la~~i~~~l~pir~~~~~~~~ 275 (292)
.+.+++.+..|.+| .+++.++|. .++..+...|.|.|....+...
T Consensus 307 ~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~ 359 (401)
T COG0162 307 EAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ 359 (401)
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence 45788899999988 899999999 8888899999999988776443
No 32
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=96.20 E-value=0.00097 Score=63.47 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=44.1
Q ss_pred cccccccCCCc---cccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h---~elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
.-|+|.||..| +..++.+++ .||.+.|..+...++ .+.|. .|||||.+| .|.+.|
T Consensus 230 ~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V-~l~gg-~KMSKSkGn-vI~~~d 288 (353)
T cd00674 230 FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFI-GLKGG-GKMSSSKGN-VITPSD 288 (353)
T ss_pred EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeE-EeCCC-CccCCCCCC-cCCHHH
Confidence 67999999999 999999999 999988877666655 35552 699999876 666644
No 33
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=93.38 E-value=0.12 Score=46.79 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=87.1
Q ss_pred hh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhh-hheee
Q 022791 4 KY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVA-KCVTY 81 (292)
Q Consensus 4 ~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~-r~~t~ 81 (292)
.| +...+|..+++=|-|. +.+. ..........+.+++..+|++++. ++.||+-.+ .|...+-+|- +-.-|
T Consensus 25 ~~l~Ar~~~G~~ilRieDt----D~~r-~~~~~~~~~~i~~dL~wLGl~~d~--~~~qS~r~~-~y~~~~~~Li~~G~aY 96 (240)
T cd09287 25 NGEYAKMYGGKFILRFDDT----DPRT-KRPDPEAYDMIPEDLEWLGVKWDE--VVIASDRIE-LYYEYARKLIEMGGAY 96 (240)
T ss_pred HHHHHHHcCCEEEEeeCcC----CCCc-ccchHHHHHHHHHHHHHcCCCCCC--ccchhccHH-HHHHHHHHHHHcCCcc
Confidence 44 3334677778777773 2212 012333334577788899999984 678887542 2322222221 11111
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 161 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l 161 (292)
. ....| + -.++||..+-|-. ++|.+.. . |+|.-|.|-..+-..=.-+.+.||.+.|...+.|+|
T Consensus 97 ~--~~~~~---~---~~~i~ptY~la~v----VDD~~~g-I---ThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll 160 (240)
T cd09287 97 V--HPRTG---S---KYRVWPTLNFAVA----VDDHLLG-V---THVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRL 160 (240)
T ss_pred c--CcccC---C---cEEEEEcccccee----eeccccC-C---CeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeee
Confidence 1 00101 1 1245788877632 3465442 2 689999998887777777888899999988888888
Q ss_pred ccccCCcccccccC
Q 022791 162 PALQGETGKMSASD 175 (292)
Q Consensus 162 pgL~g~~~KMSkS~ 175 (292)
.. .| .||||.+
T Consensus 161 ~~-~~--~kLSKR~ 171 (240)
T cd09287 161 KI-EG--GKLSTSK 171 (240)
T ss_pred cC-CC--Ceecccc
Confidence 53 44 7999986
No 34
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=92.72 E-value=0.099 Score=51.90 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k 195 (292)
|+|..|.||..|.-.-..+.+.||.+.|...|.++|.+++| +||||.+. .+.+.+ .|+.+..-+.+
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence 58889999999998888899999998898888888888887 79999975 444432 35555544443
No 35
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.03 E-value=0.07 Score=57.06 Aligned_cols=56 Identities=25% Similarity=0.126 Sum_probs=36.9
Q ss_pred cCCCcccccccccccCCC---ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeE
Q 022791 119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 181 (292)
Q Consensus 119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~ 181 (292)
.+.+| +...|.||.. |-.+-..++- +|.+.+. ++.|.++...+| .|||||.+| .|.
T Consensus 543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId 602 (912)
T PRK05743 543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID 602 (912)
T ss_pred CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence 35565 6789999973 3344444443 5555553 445888888887 799999987 443
No 36
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=91.70 E-value=0.36 Score=47.84 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=51.9
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k 195 (292)
++|..|.||..|...-..+.+.+|.+.|...+.+++.+++| +||||..+ .+.|.+ .|+.+..-+..
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999998888999999998888888888888888 79999975 444432 45555555544
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=91.50 E-value=0.03 Score=52.20 Aligned_cols=53 Identities=21% Similarity=0.071 Sum_probs=34.1
Q ss_pred cccccccCC-CccccccccCcccCCC-Cc-cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~-~h~elaR~ia~r~n~~-~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+..+|.||. +|++.-.-.+.-++.. .| .++.+.++..-.| +|||||.+| .|++
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~ 284 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDP 284 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCH
Confidence 578999999 7766555544444433 33 3334666653333 799999987 6665
No 38
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=91.31 E-value=0.038 Score=55.19 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=41.9
Q ss_pred cccccccCCCccccccccCcccCCCCcc---chh--ccccccccCCcccccccCCCceeEecCCHHH
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 188 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~---~l~--~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 188 (292)
+-.+|.||..|+.-...+++.+|+.++. .++ ..++.+=+| +|||||.+| .|.+.|==++
T Consensus 276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence 4579999999999999999999986432 222 234444343 799999986 7777554333
No 39
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=90.18 E-value=0.06 Score=51.82 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=32.5
Q ss_pred cccccccCCCccccccccCc--ccCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~--r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+...|.||...+-.. .++. .+....| .++.+.++.+++| +|||||.+| .|.+
T Consensus 299 ~~~~G~D~~~~h~~~-~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~ 354 (382)
T cd00817 299 LLVTGHDIIFFWVAR-MIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDP 354 (382)
T ss_pred eeeeecCcCchHHHH-HHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCH
Confidence 578999997654322 2222 1222234 3445778877777 799999987 6655
No 40
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=89.97 E-value=0.52 Score=42.53 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=83.5
Q ss_pred hhh-HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhh-hee
Q 022791 3 TKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK-CVT 80 (292)
Q Consensus 3 ~~~-lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r-~~t 80 (292)
..| +....|..+++=|=| |+ ......+....++.++..+|++.+. ++.||+-.+ .|..-+-+|.. -..
T Consensus 24 ~~~l~Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~~-~Y~~~~~~L~~~g~a 93 (238)
T cd00807 24 LNFGYAKKYGGRCNLRFDD----TN---PEKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYFD-QLYEYAEQLIKKGKA 93 (238)
T ss_pred HHHHHHHHhCCEEEEEecC----CC---CcccchHHHHHHHHHHHHcCCCCCC--ceecccCHH-HHHHHHHHHHHcCCe
Confidence 445 333457777776655 22 2223445556777788889999984 677887542 23222222211 001
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 160 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~ 160 (292)
|... .. . -...+||..+-|-. ++|.+.. | |+|.-|.|....-..=.-+.+.||.+.|..+.-..
T Consensus 94 Y~~~--~~---~---~~~~i~ptY~lA~v----VDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~h 157 (238)
T cd00807 94 YVHH--RT---G---DKWCIYPTYDFAHP----IVDSIEG---I-THSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSR 157 (238)
T ss_pred ecCC--CC---C---CCEEEEeccccceE----eeccccC---C-CeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEE
Confidence 1100 00 0 12335788877622 3466543 2 68999999887766666678889998886443223
Q ss_pred cccccCCcccccccCC
Q 022791 161 FPALQGETGKMSASDP 176 (292)
Q Consensus 161 lpgL~g~~~KMSkS~~ 176 (292)
+ +.+| .|+||++.
T Consensus 158 l-n~~g--~kLSKR~~ 170 (238)
T cd00807 158 L-NLTY--TVMSKRKL 170 (238)
T ss_pred E-CCCC--CCccCcCc
Confidence 3 6666 79999974
No 41
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=89.65 E-value=0.082 Score=52.24 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=34.7
Q ss_pred ccccCCCcccccccccccC-CCccccccccCc---ccCCCCccchhccccccccCCcccccccCCCceeEec
Q 022791 116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAP---RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~---r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
.+|...-| +-++|.|. .+|+ .+++|. -+|.|-+-...+.-+..++| +|||||.+| .|.+.
T Consensus 215 ~~lg~~~D---ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKS~GN-~i~~~ 278 (463)
T PRK00260 215 KYLGETFD---IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFVTVNG--EKMSKSLGN-FFTIR 278 (463)
T ss_pred HhcCCCcc---eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEEccCC--CcccCcCCC-CCCHH
Confidence 45554444 45899995 4565 455655 24522222334433345777 799999987 55553
No 42
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.95 E-value=0.078 Score=49.63 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=31.5
Q ss_pred cccccccCCCcc----ccccccCcccCC---CCccch-hccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPALI-ESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~----elaR~ia~r~n~---~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+-.+|.||.+++ .+-..++...|+ +.|..+ .+.+|. ++| +|||||.+| .|++.
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~ 287 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPD 287 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHH
Confidence 457899996633 233334444443 344333 345544 566 799999986 77663
No 43
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=88.60 E-value=0.097 Score=55.62 Aligned_cols=53 Identities=26% Similarity=0.205 Sum_probs=32.4
Q ss_pred cccccccCCC---ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDP---YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~---h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.||.. |..+-..++- ++.+.|. ++.+.++...+| +|||||.+| .|...
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~ 623 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPL 623 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHH
Confidence 6789999976 2222222221 3444443 344777776676 799999987 66543
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=88.28 E-value=0.17 Score=50.29 Aligned_cols=52 Identities=27% Similarity=0.233 Sum_probs=33.4
Q ss_pred cccccccCCCcc---ccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYF---RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~---elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+...|.||..++ ..+.-.|- +.+.| .++.+.++. ++| +|||||.+| .|.+.|
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a~--~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMAA--GLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred ceEecccccccchhHHHHHHHhC--CCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 468899998852 22332332 45556 444567765 566 799999986 777643
No 45
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=87.72 E-value=0.099 Score=49.49 Aligned_cols=53 Identities=26% Similarity=0.176 Sum_probs=31.7
Q ss_pred cccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+.+.|.||.. |..+..-++ -.+...| .++.+..+...+| +|||||.+| .|++.
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~ 311 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ 311 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence 4677999974 333322222 2233333 3444777766677 799999987 66663
No 46
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=87.70 E-value=0.11 Score=51.85 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=53.0
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ec---CCHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~I~kKI~k 195 (292)
++|..|.||..|.-.-..+.+.+|...|...|.++|.+++| +||||.+....|. +- =.|+.|..-+..
T Consensus 198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999988888889999998898889999999988 7999997643221 11 137777777664
No 47
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=87.42 E-value=0.16 Score=50.89 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=32.6
Q ss_pred cccccccCCCcc---ccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~---elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
.-|.|.|+...- ....++|+ -||...|..+..-. ..|.|.+.|||||.+| .|.+
T Consensus 228 ~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~-v~L~~~g~KMSKS~Gn-~itl 285 (515)
T TIGR00467 228 FEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEW-ISLKGKGGKMSSSKGD-VISV 285 (515)
T ss_pred cccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEE-EEEcCCCccccCCCCC-CccH
Confidence 578999986532 44555665 56665665443222 2255555799999875 4443
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=87.26 E-value=0.1 Score=51.58 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=35.7
Q ss_pred ccccCCCcccccccccccC-CCccccccccCcc-cCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791 116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
.+|...-| +-.+|.|. .+|++.-+-.+.- +|.+.+...++.-+..++| +|||||.+| .|.+
T Consensus 214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g--~KMSKS~GN-~i~~ 276 (465)
T TIGR00435 214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDN--EKMSKSLGN-FFTV 276 (465)
T ss_pred HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEEecC--ccccccCCC-cCCH
Confidence 45555455 46899998 4666654444332 4533333333333345777 799999986 5554
No 49
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=87.00 E-value=0.13 Score=52.13 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=46.7
Q ss_pred cccccccCCCccccccccCcccCCCCccch-hccccccccCCcccccccCCCceeEecCCHHHHHHHhhh
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 195 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k 195 (292)
+-.+|.||..|+.-...++..+|++.|.-+ ++..-+- .| .|||||.+| .|.+.|=.++..++...
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~--~kmSkr~Gn-~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PL--GSMKTRRGN-VISLDNLLDEASKRAGN 396 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-EC--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence 557999999999999999999998766433 3332111 22 599999975 99998766665554444
No 50
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.69 E-value=0.15 Score=54.81 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=34.1
Q ss_pred cCCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
.+.+| +...|.||.. |-.+..-++ -.|.+++ .++.|.++...+| +|||||.+| .|..
T Consensus 581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP 641 (961)
T PRK13804 581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP 641 (961)
T ss_pred CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence 45666 5789999975 111111111 0122233 4555888888887 799999987 5543
No 51
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=86.59 E-value=0.19 Score=50.75 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=51.5
Q ss_pred ccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791 99 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 176 (292)
Q Consensus 99 l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 176 (292)
..||.++-|.. ++|. ..+. |+|.-|.|...+-..=.-+.+.||.+.|...+.++|. ++| .|||||..
T Consensus 278 ~i~PtY~fA~~----VDD~-l~GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~ 344 (567)
T PRK04156 278 RVWPTYNFAVA----VDDH-LLGV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI 344 (567)
T ss_pred EEEEEeccCce----eeec-CCCC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence 45888877744 3344 3343 6999999998887777788888999899999988875 566 69999973
No 52
>PLN02843 isoleucyl-tRNA synthetase
Probab=85.13 E-value=0.23 Score=53.48 Aligned_cols=56 Identities=25% Similarity=0.135 Sum_probs=34.0
Q ss_pred cCCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeE
Q 022791 119 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY 181 (292)
Q Consensus 119 ~~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 181 (292)
.+.+| +...|.||.. |-.+..-++ -.|.+++ .++.|.++..-+| +|||||.+| .|.
T Consensus 562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~ 621 (974)
T PLN02843 562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVD 621 (974)
T ss_pred CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCC
Confidence 35565 5788999987 222222221 1344332 4455788877777 899999987 443
No 53
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=84.73 E-value=0.18 Score=53.64 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=34.9
Q ss_pred cccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.||..+ =++|-++.... ...| .++.|.++...+| +|||||.+| .|+..
T Consensus 476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~ 532 (874)
T PRK05729 476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPL 532 (874)
T ss_pred cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHH
Confidence 56889998875 34444443221 1345 4555888888888 799999987 66553
No 54
>PLN02381 valyl-tRNA synthetase
Probab=84.40 E-value=0.17 Score=54.96 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCCcccccccccccCCCccccccccCccc--CCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~--n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
|.+| +..-|.||. ++=++|-++..+ ....| .++.|.+|.+-+| .|||||.+| .|..
T Consensus 607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP 666 (1066)
T PLN02381 607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDP 666 (1066)
T ss_pred CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCH
Confidence 5565 456899998 444555554432 22456 3456899998888 799999987 5543
No 55
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=83.97 E-value=0.25 Score=52.15 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=30.4
Q ss_pred cccccccCCCccccccccCcc---cCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+...|.||.... +++-++.. ++. .| .++.+.++...+| +|||||.+| .|.+
T Consensus 489 ~~~~G~Di~~~w-~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p 544 (800)
T PRK13208 489 LRPQGHDIIRTW-LFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTP 544 (800)
T ss_pred EEEeecchhhhH-HHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCH
Confidence 456899987621 12222111 222 34 3345778877777 799999987 5554
No 56
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=83.68 E-value=0.34 Score=52.08 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=30.4
Q ss_pred cccccccCCC-cccccc--ccCcccCC-CCc-cchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDP-YFRMTR--DVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR--~ia~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+...|.||.+ |+.+.. -.| -|+. +-| .++.+.++.. +| +|||||.+| .|.+.|
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a-~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVA-IFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHHHHH-cCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHH
Confidence 5688999976 444321 111 0111 123 4445666654 66 899999987 665543
No 57
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=83.41 E-value=0.25 Score=47.74 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=34.4
Q ss_pred ccccCCCcccccccccccC-CCccccccccCcc-cCC-CCccchhccccccccCCcccccccCCCceeEec
Q 022791 116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r-~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
.+|.-.-| +--+|.|- -||+|.-+-...- +|. |-+-..++.-+...+| +|||||..| .|.+.
T Consensus 209 ~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 209 NRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDG--EKMSKSRGN-LVFVS 273 (384)
T ss_pred HHcCCCcc---cccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCC--CcccCcCCC-cCCHH
Confidence 44444444 23567774 3666544333332 333 2223444555556677 799999987 66653
No 58
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=83.39 E-value=0.57 Score=47.85 Aligned_cols=56 Identities=21% Similarity=0.045 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCCccccccccCc--ccCCCC--ccchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAP--RIGYHK--PALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~--r~n~~~--p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.+| +..-|.||....- .+-+.. .+.... +.++.+.++...+| +|||||.+| .|.+
T Consensus 513 ~P~D---~~~~G~D~~~~W~-~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 513 YPVD---LYIEGKDQIRGWF-QSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp SSBS---EEEEEGGGTTTHH-HHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred CCcc---cccCCccchhhHH-HHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 4555 5788999976532 111111 111123 35566888888888 899999987 5543
No 59
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=82.67 E-value=0.58 Score=43.10 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCcee
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I 180 (292)
||..+-|. .++|.+.. | |+|.=|.|....--.=.-+.+.||.+.|...+.|+|.+.+| .|+||++....|
T Consensus 170 ~ptY~fA~----vVDD~~~g---I-ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i 239 (272)
T TIGR03838 170 LFAYQLAV----VVDDAAQG---I-THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPAL 239 (272)
T ss_pred CccccChh----hhhcccCC---C-CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccch
Confidence 56666552 23455442 2 68899998877665556677888999999888999999998 799999864444
Q ss_pred EecCCHHHHHHH
Q 022791 181 YVTDSAKAIKNK 192 (292)
Q Consensus 181 ~L~D~~~~I~kK 192 (292)
.=.+.++.+..-
T Consensus 240 ~~~~~~~~~~~~ 251 (272)
T TIGR03838 240 DLSHPLPALLAA 251 (272)
T ss_pred hcCCcHHHHHHH
Confidence 333444444433
No 60
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=82.61 E-value=0.24 Score=53.57 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCcccccccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeE
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIY 181 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 181 (292)
|.+| +...|.||.. +=++|-++.-+. .+.| .++.|.+|.+-+| .|||||.+| .|.
T Consensus 537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId 595 (995)
T PTZ00419 537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID 595 (995)
T ss_pred CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence 4455 5678888865 233333333221 1466 3556889988887 799999987 543
No 61
>PLN02286 arginine-tRNA ligase
Probab=82.55 E-value=0.67 Score=47.17 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=47.1
Q ss_pred ccccccccCCCccccccccCcccCCCCc------cchhccccccccCCcccccccCCCceeEecCCHHHHHHHhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 194 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p------~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~ 194 (292)
++--+|.||..|+.-...+++.+|+.++ .++.-.+|-++.| +||||-.++ .|.|.|==+++..+.+
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~~a~ 401 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKSRSK 401 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHHHHH
Confidence 4556899999999999999999997522 2334567766666 699987664 8888665555444333
No 62
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=82.50 E-value=0.25 Score=53.73 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=35.7
Q ss_pred cccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+...|.||.. +=++|-++..+. ...| .++.|.+|..-+| +|||||.+| .|+..|
T Consensus 494 ~~~~G~Dii~-~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIF-FWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhcccccHHh-HHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 5678999974 445565554332 1345 3555888877777 799999987 666544
No 63
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=81.85 E-value=0.28 Score=52.97 Aligned_cols=56 Identities=20% Similarity=0.035 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCccccccccCc---ccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~---r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.+| +...|.||.... +.+-++. -+|.+++ .++.+.++...+| +|||||.+| .|..
T Consensus 544 ~Pad---~~~~G~Di~r~W-f~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP 603 (975)
T PRK06039 544 FPAD---FIVEGIDQTRGW-FYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDP 603 (975)
T ss_pred CCce---EEEechhhHhhH-HHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCH
Confidence 4455 567899997521 1111111 1233322 3445777777677 799999987 5543
No 64
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=81.64 E-value=0.25 Score=43.83 Aligned_cols=53 Identities=23% Similarity=0.092 Sum_probs=30.1
Q ss_pred cccccCC-CccccccccCcc-cCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791 129 PCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 129 pvG~DQ~-~h~elaR~ia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
-+|.|.. +|++.-+-...- +|.+.+....+.-+..++| +|||||.+| .|.+.|
T Consensus 133 ~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn-~v~~~d 187 (213)
T cd00672 133 GGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGN-FITVRD 187 (213)
T ss_pred eecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCC-ccCHHH
Confidence 4566654 565544433332 3443344444445556777 799999986 665543
No 65
>PLN02943 aminoacyl-tRNA ligase
Probab=81.61 E-value=0.36 Score=51.99 Aligned_cols=58 Identities=24% Similarity=0.126 Sum_probs=37.4
Q ss_pred CCCcccccccccccCCCccccccccCcccC--CCCc--cchhccccccccCCcccccccCCCceeEecC
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
|.+| +...|.||.. +=++|-++.-.. ...| .+..|..+...+| +|||||.+| .|...|
T Consensus 535 yP~d---l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 596 (958)
T PLN02943 535 YPTT---VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD 596 (958)
T ss_pred CCCe---EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence 4555 4677999984 455664443222 2345 3455888888888 899999987 665543
No 66
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=81.57 E-value=0.46 Score=44.32 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 176 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 176 (292)
+|..+-|- -++|.+.. | |+|.=|.|....-..=.-+.+.||.+.|...+.|+|.+.+| .||||++.
T Consensus 177 ~ptY~lA~----vVDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~ 242 (299)
T PRK05710 177 LFAYQLAV----VVDDALQG---V-THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNG 242 (299)
T ss_pred Cccccchh----HHhcccCC---C-CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCC
Confidence 45555542 23355442 2 58888999877666666678889999999999999999998 79999964
No 67
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=79.89 E-value=0.37 Score=51.29 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=34.7
Q ss_pred cccccccCCCccccccccCcc--cCCCCc--cchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r--~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+...|.||...+ ++|-++.- +..+.| .++.|.++...+| +|||||.+| .|.+.|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 578899997654 33333322 111345 4455888888887 799999987 665543
No 68
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=79.58 E-value=0.38 Score=45.04 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=30.4
Q ss_pred cccccccCCCccc---cccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~e---laR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+..+|.|+..++. .|--.+ .+.+.|..+. +.++ .++| +|||||..| .|.+.
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~~--~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~ 292 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLLG--AGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPD 292 (319)
T ss_pred EEEEeechhhhhHHHHHHHHHh--CCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHH
Confidence 6789999988641 121111 3445454433 4443 4456 799999986 77663
No 69
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=79.50 E-value=0.37 Score=42.41 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=34.6
Q ss_pred cccccCCCccccccccCcccCCC-Cc--cchhccccccccCCcccccccC
Q 022791 129 PCAIDQDPYFRMTRDVAPRIGYH-KP--ALIESSFFPALQGETGKMSASD 175 (292)
Q Consensus 129 pvG~DQ~~h~elaR~ia~r~n~~-~p--~~l~~~~lpgL~g~~~KMSkS~ 175 (292)
.+|.||..|+.-.+.+++.+|.+ +| .++..++|..-+| +||||..
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~ 211 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRA 211 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCC
Confidence 89999999999999999999985 33 3333467655445 7999974
No 70
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=79.30 E-value=0.72 Score=45.72 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=42.1
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 176 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 176 (292)
|+|.-|.|+..+=..=+-+.+.||.+.|...+.++|.+=+| +||||++.
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~ 256 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG 256 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence 68999999988877777788889999999999999998443 79999986
No 71
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=79.21 E-value=0.58 Score=47.16 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=30.4
Q ss_pred cccccccCCCcccc-ccc--cCcccCCCCc-cchhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFRM-TRD--VAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~el-aR~--ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.|+.+++.+ --. ++....++.| .++.+.++. ++| +|||||.+| .|.+.
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~ 346 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVD 346 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHH
Confidence 56778999875432 111 1121113445 444466664 566 799999987 55543
No 72
>PLN02563 aminoacyl-tRNA ligase
Probab=78.82 E-value=0.63 Score=50.13 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=25.2
Q ss_pred cCCCcccccccccccC-CCccccccccCccc------CCCCcc--chhcccccc
Q 022791 119 SGKDHLRCLIPCAIDQ-DPYFRMTRDVAPRI------GYHKPA--LIESSFFPA 163 (292)
Q Consensus 119 ~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r~------n~~~p~--~l~~~~lpg 163 (292)
.+.+| +..+|.|| .-|+-.+|-....+ ...+|. .+.+.+|.+
T Consensus 614 w~PvD---~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~ 664 (963)
T PLN02563 614 WMPVD---LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG 664 (963)
T ss_pred cCCCc---EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence 35566 67899999 46666666554332 124663 344677765
No 73
>PLN02959 aminoacyl-tRNA ligase
Probab=78.56 E-value=0.35 Score=52.70 Aligned_cols=52 Identities=21% Similarity=0.094 Sum_probs=28.2
Q ss_pred cccccccCCCccccccccCcc---cCC-CCcc-chhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFRMTRDVAPR---IGY-HKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r---~n~-~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.||...+- +.-+... ++. |-|. ++.+.+|. ++| +|||||.+| .|.+.
T Consensus 674 l~~sG~Dii~~wl-~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~ 730 (1084)
T PLN02959 674 LRVSGKDLIQNHL-TFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLR 730 (1084)
T ss_pred EEEecccHHHHHH-HHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHH
Confidence 4567888865432 2222211 121 2232 33455555 676 899999987 55553
No 74
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.88 E-value=2.7 Score=44.33 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.1
Q ss_pred cchhccccccccCCcccccccCCCceeEe
Q 022791 154 ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 154 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
.++.|++|..-+| .|||||.+| .|.-
T Consensus 579 ~V~LH~mVRDa~G--RKMSKSLGN-VIDP 604 (995)
T KOG0432|consen 579 EVLLHGLVRDAHG--RKMSKSLGN-VIDP 604 (995)
T ss_pred heeechhhccccc--cccchhhcc-ccCH
Confidence 4567999999998 799999987 5543
No 75
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=77.82 E-value=1.5 Score=47.06 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=29.5
Q ss_pred cccccccCCC-ccccccccCc-ccCC-CCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDP-YFRMTRDVAP-RIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR~ia~-r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+...|.||.. |+-+.+-... -|+. +-| .++.+.++.. +| +|||||.+| .|.+
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp 588 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPL 588 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCH
Confidence 5688999976 3333211100 1111 334 4445677765 66 899999987 5544
No 76
>PLN02882 aminoacyl-tRNA ligase
Probab=77.80 E-value=1.1 Score=49.29 Aligned_cols=54 Identities=20% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCccccccccCc---ccCCCCcc-chhccccccccCCcccccccCCCcee
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKPA-LIESSFFPALQGETGKMSASDPNSAI 180 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~---r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I 180 (292)
+.+| ++.-|.||.... +.+-++. -||.+.|. ++.|.++..=+| +|||||.+| .|
T Consensus 566 ~PaD---~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vI 623 (1159)
T PLN02882 566 FPAD---FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YP 623 (1159)
T ss_pred CCce---EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CC
Confidence 4455 678999998854 3332222 24555553 344777766566 899999987 44
No 77
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=77.13 E-value=0.53 Score=45.85 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=28.8
Q ss_pred cccccC-CCccccccccCcc-cCC-CCccchhccccccccCCcccccccCCCceeEe
Q 022791 129 PCAIDQ-DPYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 129 pvG~DQ-~~h~elaR~ia~r-~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
-+|.|- .+|+|.-+-...- +|. |-+-..++.-....+| +|||||..| .|.+
T Consensus 246 ~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~ 299 (411)
T TIGR03447 246 GGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDG--EKMSKSLGN-LVFV 299 (411)
T ss_pred cCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCC--CCccCcCCC-CCCH
Confidence 456664 3566543333322 333 2233444555556677 899999987 6655
No 78
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=76.58 E-value=0.18 Score=48.17 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=28.1
Q ss_pred cccccccCCC---ccccccccC-cccCCCCccchhccccccccCCcccccccCCCceeEecC-----CHHHHHH
Q 022791 127 LIPCAIDQDP---YFRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKN 191 (292)
Q Consensus 127 ~vpvG~DQ~~---h~elaR~ia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~I~k 191 (292)
.-|.|.|+-. -...+.+|| +=||.+.|..+.--+ -++.|. +|||||..| .|.+.| +||.++=
T Consensus 237 fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~-~~~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 237 FEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEF-FLDKGG-GKMSSSKGN-GITPEEWLEYAPPESLRY 307 (360)
T ss_dssp EEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE---EEES----------------HHHHHTTS-HHHHHH
T ss_pred eccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeE-EEeCCC-cccccCCCC-ccCHHHHHHhcCHHHHHH
Confidence 6799999887 788899999 678988887765333 345563 599999986 555543 3555543
No 79
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.03 E-value=0.8 Score=45.11 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=30.1
Q ss_pred chhhHHhhcC-cceEEEeecccccccc----c-cCHHHHH-HHHHhchhhhhhccCC
Q 022791 2 FTKYLQDAFK-VPLVIQLTDDEKCMWK----N-LSVEESQ-RLARENAKDIIACGFD 51 (292)
Q Consensus 2 ~~~~lQ~~~g-~~~~I~iaD~hA~~~~----~-~~~~~i~-~~~~~~~~~~lA~Gld 51 (292)
+.|||+.... +.++-=|+|..--+.+ . .++.++. .+..++.+++-|+|+-
T Consensus 50 l~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~ 106 (464)
T COG0215 50 LRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVL 106 (464)
T ss_pred HHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4577888533 4555556775433321 1 3666654 4556788888899984
No 80
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=75.45 E-value=0.61 Score=49.57 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCCcccccccccccC-CCccccccccCcc------cCCCCc--cchhcccccc
Q 022791 120 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPR------IGYHKP--ALIESSFFPA 163 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ-~~h~elaR~ia~r------~n~~~p--~~l~~~~lpg 163 (292)
+.+| +...|.|| .-|+-.+|-.... +...+| .++.+.+|.+
T Consensus 519 ~PvD---~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~ 568 (842)
T TIGR00396 519 LPVD---LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLG 568 (842)
T ss_pred CCCc---EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEe
Confidence 4566 67899999 4555555442211 122456 3455778776
No 81
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=74.24 E-value=0.83 Score=47.29 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=29.8
Q ss_pred cccccccCCCcccc---ccccCcccCCCCccch-hccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~el---aR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+.++|.|-..++.+ |.=++ .|++.|..+ .+.++.. +| +|||||.+| .|+..
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~ 341 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWAR 341 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHH
Confidence 44577776664321 22222 355666444 3666655 66 799999987 56553
No 82
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=73.46 E-value=0.74 Score=47.42 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=30.7
Q ss_pred cccccccCCCcccc---ccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~el---aR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+...|.||.+++-+ +.-++ .|++.|..+. |..+. +.| +|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~--~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMA--LGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHh--CCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHH
Confidence 56789999874331 11111 2455664443 55544 345 799999986 666543
No 83
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=71.57 E-value=0.93 Score=46.80 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=34.9
Q ss_pred ccccCCCcccccccccccC-CCccc--cccccCcccCC-CCc-cchhccccccccCCcccccccCCCceeEec
Q 022791 116 HLFSGKDHLRCLIPCAIDQ-DPYFR--MTRDVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 116 Dil~~~ad~~~~vpvG~DQ-~~h~e--laR~ia~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
|||....| +--+|.|- -||++ +|.--|- +|. +-+ ..+++.. ..++| .|||||.+| .|.+.
T Consensus 263 ~~lg~~~D---Ih~gG~DL~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~-L~i~G--~KMSKSLGN-fItp~ 327 (651)
T PTZ00399 263 NILGDPID---IHSGGIDLKFPHHDNELAQSEAY-FDKHQWVNYFLHSGH-LHIKG--LKMSKSLKN-FITIR 327 (651)
T ss_pred HHcCCcce---eeccCCCCCCCcchhHHHHHHHh-hCCCCCCcEEEEEEE-EEecc--chhhhcCCC-cccHH
Confidence 78877777 35788887 36643 3332221 232 222 2334455 34676 799999987 66553
No 84
>PLN02627 glutamyl-tRNA synthetase
Probab=70.96 E-value=1.6 Score=43.97 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCcee
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 180 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I 180 (292)
||..+-|. .++|.+. + | |+|.=|.|....---=.-|.+-||.+.|...|.|+|.+-+| +||||.++. +
T Consensus 234 ~PtY~fA~----vVDD~~m-g--I-THViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~--~ 301 (535)
T PLN02627 234 QPVYNFCV----AVDDATM-G--I-THVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGA--T 301 (535)
T ss_pred Cccccccc----eeccccc-C--C-cEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCC--c
Confidence 55555542 2345544 2 2 68999999877655555577778999999999999999887 799999753 3
Q ss_pred EecC------CHHHHHHHhhh
Q 022791 181 YVTD------SAKAIKNKINK 195 (292)
Q Consensus 181 ~L~D------~~~~I~kKI~k 195 (292)
.+.+ .|+.|..-+..
T Consensus 302 ~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 302 SVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred cHHHHHHCCCCHHHHHHHHHH
Confidence 3321 36666666655
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=70.39 E-value=1.1 Score=44.95 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=31.1
Q ss_pred cccccccCCCccccc-cccCcccCCCCcc-chhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRMT-RDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~ela-R~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+.+.|.|...++-+- --+..-.+++.|. ++.+.++. +.| +|||||.+| .|.+.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 678899998853221 0011112344453 34456654 345 799999987 776543
No 86
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=70.34 E-value=0.83 Score=46.32 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=42.4
Q ss_pred ccccccccCCCccccccccCcccCCCCcc---chhccccccccCCcccccccCCCceeEecCCHHH
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 188 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~---~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 188 (292)
.+-.+|.||..|+.-...+++.+|+..+. ++.-.+|- +.| +||||-.++ .|.|.|==++
T Consensus 327 ~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 327 ALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence 36679999999999999999999985332 22334443 454 699998875 7777654444
No 87
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.52 E-value=3.1 Score=44.49 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=34.4
Q ss_pred cccccccCCCccccc---cccCcccCCCCc--cchhccccccccCCcccccccCCCceeEecCCHHHHHHH
Q 022791 127 LIPCAIDQDPYFRMT---RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 192 (292)
Q Consensus 127 ~vpvG~DQ~~h~ela---R~ia~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kK 192 (292)
++.=|.||..=.=.+ --.| -+| ..| .++.|.++..=+| .|||||.+| .=+|.+|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a-~~~-~aPYk~vltHGfvlDe~G--rKMSKSlGN-----~v~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTA-LFG-RAPYKNVLTHGFVLDEKG--RKMSKSLGN-----VVDPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHH-HcC-CchHHHHhhcccEECCCC--CCccccCCC-----cCCHHHHHHh
Confidence 567799997522111 1111 123 344 5577888888777 899999987 3455555554
No 88
>PLN02946 cysteine-tRNA ligase
Probab=68.88 E-value=1 Score=45.53 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=30.7
Q ss_pred ccccCCCcccccccccccC-CCccccccccCcc-cCCCC-ccchhccccccccCCcccccccCCC
Q 022791 116 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGYHK-PALIESSFFPALQGETGKMSASDPN 177 (292)
Q Consensus 116 Dil~~~ad~~~~vpvG~DQ-~~h~elaR~ia~r-~n~~~-p~~l~~~~lpgL~g~~~KMSkS~~~ 177 (292)
.+|...-| +--+|.|- -||+|.-+..... .|.+- ..-+++.+|. ++| +|||||.+|
T Consensus 272 ~~lG~~~D---IH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G--~KMSKSlGN 330 (557)
T PLN02946 272 AYLGHSFD---IHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDS--EKMSKSLGN 330 (557)
T ss_pred HHcCCCee---EeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCC--CCcCCcCCC
Confidence 44444444 34567774 4677654433332 22111 1235566766 777 799999876
No 89
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=68.35 E-value=1.1 Score=44.68 Aligned_cols=53 Identities=15% Similarity=0.034 Sum_probs=30.4
Q ss_pred cccccccC-CCccccccccCcc-cCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQ-DPYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ-~~h~elaR~ia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+--+|.|- -||+|.-+-.+.. .|.+-+-..++......+| +|||||.+| .|.+
T Consensus 236 IH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g--~KMSKSlGN-~itl 290 (490)
T PRK14536 236 IHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNK--GKMSKSAGQ-FLTL 290 (490)
T ss_pred EEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecC--ccccccCCC-cccH
Confidence 34677774 4676554433333 2333333344444445676 799999986 6665
No 90
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=68.09 E-value=2.5 Score=46.71 Aligned_cols=71 Identities=24% Similarity=0.175 Sum_probs=40.7
Q ss_pred CccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccc---cccCcccCCCCc--cchhccccccccCCc
Q 022791 94 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT---RDVAPRIGYHKP--ALIESSFFPALQGET 168 (292)
Q Consensus 94 ~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~ela---R~ia~r~n~~~p--~~l~~~~lpgL~g~~ 168 (292)
.+.+.+-||----.+.|. -.+.+| +.+=|.||....-.+ .-++ -+|. .| .++.|.++..-+|
T Consensus 652 ~p~a~~~~P~~~~~~~f~------~~fPaD---~i~eG~Dq~rgWf~s~l~~s~~-l~~~-~PfK~VlvHG~Vld~dG-- 718 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFH------KIFPAD---FIAEGLDQTRGWFYTLLVISTL-LFDK-APFKNLICNGLVLASDG-- 718 (1205)
T ss_pred ChHHHhCCCcccchhhHh------ccCCce---EEEEecchhccHHHHHHHHHHH-hcCC-CCcceeEEccEEEcCCC--
Confidence 345677777421121111 125566 678899998753221 1111 1333 44 4455788877777
Q ss_pred ccccccCCC
Q 022791 169 GKMSASDPN 177 (292)
Q Consensus 169 ~KMSkS~~~ 177 (292)
+|||||.+|
T Consensus 719 ~KMSKSlGN 727 (1205)
T PTZ00427 719 KKMSKRLKN 727 (1205)
T ss_pred CCcccCCCC
Confidence 799999987
No 91
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=67.60 E-value=1.9 Score=42.43 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=50.9
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCcee-EecC---CHHHHHHHhhhcccc
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI-YVTD---SAKAIKNKINKYAFS 199 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I-~L~D---~~~~I~kKI~k~A~t 199 (292)
|+|.-|.|...+--.=.-+.+.||.+.|...|.|+|.+-+| +|+||.+...+| .+-+ .|+.|..-+.....+
T Consensus 198 THViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s 273 (445)
T PRK12558 198 THIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTS 273 (445)
T ss_pred CEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCC
Confidence 68899998877655555567778889999999999999887 799999753222 1111 377777776664444
No 92
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=65.87 E-value=1.3 Score=34.21 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=29.6
Q ss_pred cccccccCCCccccccc--cCcccCCCCccchhccccccccCCcccccccC
Q 022791 127 LIPCAIDQDPYFRMTRD--VAPRIGYHKPALIESSFFPALQGETGKMSASD 175 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~--ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 175 (292)
+++.|.|+.+++++-|. .-+.++ +.|..+.-+..+ +++ ..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~-~~~e~v~~~~~~-~~~--~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLP-VDPEQVELPRLN-LET--TVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCC-CCCeEEEccccc-cCc--eeeccCC
Confidence 57899999999999885 111222 345555544444 444 6899984
No 93
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=65.67 E-value=1.9 Score=42.33 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=85.0
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCc-cchhccccccccCCcccccccCCCce
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSA 179 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~ 179 (292)
+|..+-|- .++|.+.. | |+|.=|.|....--.=.-+.+.||.+.| ...|.|+|.+-+| +|+||.+...+
T Consensus 175 ~PtY~fA~----vVDD~~mg---I-ThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g--~KLSKR~~~~~ 244 (433)
T PRK12410 175 TPTYNFAC----AVDDMLYD---I-SLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEG--KKMSKRDNASS 244 (433)
T ss_pred Cccccccc----hhchhhcC---C-CEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCC--CeeecccChhh
Confidence 46555552 24465543 2 6899999988766555567778898764 8888999999888 79999976322
Q ss_pred eE-e---cCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc----------cChHHHHHHHHhhcCCC
Q 022791 180 IY-V---TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGG 245 (292)
Q Consensus 180 I~-L---~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~----------~~~~~~eel~~~y~~g~ 245 (292)
|. + -=.|+.|..-+.....+.+. ++...-+++..|. .+.+.+..+.+.|-. .
T Consensus 245 v~~~r~~G~~PeAi~n~l~~lG~~~~~-------------e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~-~ 310 (433)
T PRK12410 245 VKWLLEQGFLPSAIANYLILLGNKTPK-------------EIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLK-M 310 (433)
T ss_pred HHHHHHCCCCHHHHHHHHHHhCCCCcc-------------cccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHH-h
Confidence 21 0 11355566555542211110 0000001111110 034566666666654 2
Q ss_pred cccHHHHHHH---HHHHHHHHHHHHHHHhhhhH
Q 022791 246 MLTGEVKQRL---AKVLTELVERHQVARAAVTD 275 (292)
Q Consensus 246 l~~~~lK~~l---a~~i~~~l~pir~~~~~~~~ 275 (292)
+...++.+.+ .+.+...+.-+|+|.+.+.+
T Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~l~d 343 (433)
T PRK12410 311 LDDERLSKLLGFKDKDLGGLAKLYLQEASTLNE 343 (433)
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHhcCcHHH
Confidence 5555555544 23356667777777776654
No 94
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=65.02 E-value=2.5 Score=39.50 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=31.4
Q ss_pred chhhHHhhcCc--ceEEEeecccccccc-----ccCHHHH-HHHHHhchhhhhhccCCCCceeEecCCccc
Q 022791 2 FTKYLQDAFKV--PLVIQLTDDEKCMWK-----NLSVEES-QRLARENAKDIIACGFDVTKTFIFSDFDYV 64 (292)
Q Consensus 2 ~~~~lQ~~~g~--~~~I~iaD~hA~~~~-----~~~~~~i-~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~ 64 (292)
+.|+|+. .|. .++.-|+|..--+.+ ..++.++ +.+..+...++.++|+.|-.........++
T Consensus 36 l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~ 105 (300)
T PF01406_consen 36 LRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIP 105 (300)
T ss_dssp HHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHH
T ss_pred HHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHH
Confidence 3566777 354 456667786443321 1466654 455567888888999876544444443333
No 95
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.79 E-value=2.2 Score=45.20 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=20.4
Q ss_pred CCcc--chhccccccccCCcccccccCCCceeEe
Q 022791 151 HKPA--LIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 151 ~~p~--~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
..|. ++.|.++.+=+| .|||||.+| .|..
T Consensus 506 ~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vIDP 536 (877)
T COG0525 506 EVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDP 536 (877)
T ss_pred CCCccEEEEeeeEEcCCC--CCCcccCCC-cCCH
Confidence 4553 334778887787 899999987 5543
No 96
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.73 E-value=2.4 Score=43.13 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=49.0
Q ss_pred CCcccccccccccCCCccccccccCcccCCCCcc-chhccccccc-cCCcccccccCCCceeEecCCHHHHHHHh
Q 022791 121 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKI 193 (292)
Q Consensus 121 ~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~-~l~~~~lpgL-~g~~~KMSkS~~~s~I~L~D~~~~I~kKI 193 (292)
++|. ++--+|.||.+|+.-.+.++...|+..+. .+.+-..... .|...||||=.++ .|.|.|==+++.+|-
T Consensus 333 ~~d~-~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 333 GFDK-LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred CCCE-EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 4443 46678999999999999999999996663 3333222222 2233789998775 899888766666443
No 97
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=61.34 E-value=2.3 Score=39.93 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=42.1
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCce
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 179 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~ 179 (292)
|+|.=|.|-...-..=.-|.+.||.+.|...+.+.+.+.+| +|+||++....
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 68888998887766667788889998899889999999888 89999976433
No 98
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=60.93 E-value=1.6 Score=46.27 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=29.9
Q ss_pred CCCcccccccccccC-CCccccccccCcc---c---CCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPR---I---GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ-~~h~elaR~ia~r---~---n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
|.+| +...|.|| .-|+-++|-.... . ....| .++++.+| |||||.+| .|..
T Consensus 522 ~P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p 581 (805)
T PRK00390 522 LPVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDP 581 (805)
T ss_pred CCCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCH
Confidence 4566 67899999 4555555422111 1 11345 33446666 99999987 5544
No 99
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=60.07 E-value=2.2 Score=41.21 Aligned_cols=31 Identities=39% Similarity=0.531 Sum_probs=17.1
Q ss_pred cCCCCccchh-ccccccccCCcccccccCCCceeEe
Q 022791 148 IGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 148 ~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
.|.+.|..+. +..+. ++| +|||||..| .|+.
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~ 338 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWP 338 (391)
T ss_dssp CTB---SEEEEE--EE-ETT--CCEETTTTE-SSBH
T ss_pred ccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCH
Confidence 3445665443 44444 566 799999976 7765
No 100
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=59.19 E-value=3.4 Score=41.17 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=34.2
Q ss_pred cccccccCCC---ccccccccCc-ccCCCCccchhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDP---YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~---h~elaR~ia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
.-|.|.|+.- -..-++.|++ =||++.|..+.--. -+|+| ++|||||.++ .|.+.|
T Consensus 232 ~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~-i~lkg-~~~mSsSkG~-~i~~~d 290 (521)
T COG1384 232 FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEW-ILLKG-GGKMSSSKGN-VISLSD 290 (521)
T ss_pred cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEE-EEecC-CcccccCCCc-EEcHHH
Confidence 5788988653 2233455555 46777777655332 34566 4899999875 555544
No 101
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=56.87 E-value=3.9 Score=41.14 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=49.4
Q ss_pred cCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccC
Q 022791 100 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 175 (292)
Q Consensus 100 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 175 (292)
.||..+-|.+ ++|.+.. | |+|..|.|...+-..=.-+.+.||.+.|.. +++...++.| .||||++
T Consensus 187 ~~PtY~fA~~----VDD~l~g---I-THviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~f~rln~~~--~kLSKR~ 251 (523)
T PLN03233 187 AYPTYDLACP----IVDSIEG---V-THALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFARMNFMN--TVLSKRK 251 (523)
T ss_pred ceeccCCcee----eeccccC---C-CeEEechhhhcCCHHHHHHHHHhCCCCCee-eeeEEECCCC--CcccccC
Confidence 4888887743 3355442 3 699999999988777777888899988876 5566778887 6999996
No 102
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=56.16 E-value=3.4 Score=42.77 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=28.4
Q ss_pred chhhHHhhcCcceEEE--eeccc-ccccc----ccCHHHH-HHHHHhchhhhhhccCCCCc
Q 022791 2 FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIACGFDVTK 54 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~--iaD~h-A~~~~----~~~~~~i-~~~~~~~~~~~lA~Gldp~k 54 (292)
+.|||+. .|..|..+ +.|.- +++.+ ..++.++ +.+...+..++.++|+.+..
T Consensus 276 L~R~Lr~-~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~ 335 (699)
T PRK14535 276 IARWLRE-CGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPD 335 (699)
T ss_pred HHHHHHH-cCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4566766 46555443 33322 12211 1455554 45666778888899987654
No 103
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.33 E-value=8.3 Score=40.86 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.5
Q ss_pred hhccccccccCCcccccccCCCceeEec
Q 022791 156 IESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 156 l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...+|.+-.| +|||||..| .|.+.
T Consensus 567 ~~qGmVl~~~g--~KMSKSKgN-~v~p~ 591 (814)
T COG0495 567 ITQGMVLGEEG--EKMSKSKGN-VVDPE 591 (814)
T ss_pred hccceEEecCC--CccccccCC-CCCHH
Confidence 34667777665 799999987 55443
No 104
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=53.17 E-value=4.4 Score=41.36 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=50.3
Q ss_pred cCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791 100 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 176 (292)
Q Consensus 100 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 176 (292)
.||..+-|.. ++|.+.. | |+|..|.|...+-..=.-+.+.||.+.|...+-++ .+++| .||||+..
T Consensus 229 gyPtYdfA~v----VDD~l~g---I-THvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g--~kLSKRkl 294 (601)
T PTZ00402 229 AYPTYDFCCP----IIDSVEG---V-THALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEY--SVMSKRKL 294 (601)
T ss_pred eeeccCccee----eEccccC---C-ceEeechhhhhCcHHHHHHHHHhCCCCceEEEEee-EcCCC--CcccccCC
Confidence 6787777633 3355442 3 68999999988877777788889998898888775 57887 79999964
No 105
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=52.50 E-value=3.5 Score=41.07 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=30.2
Q ss_pred cccccccCC-CccccccccCccc-CCCCccch-hccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQD-PYFRMTRDVAPRI-GYHKPALI-ESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~-~h~elaR~ia~r~-n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.-+|.|-. ||+|.=+-.+... |.+-+-.. ++.+| .++| +|||||.+| .|.+
T Consensus 236 IH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l-~~~g--~KMSKSlGN-~i~l 290 (481)
T PRK14534 236 IHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFL-IMEY--EKMSKSNNN-FITI 290 (481)
T ss_pred EEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEE-EecC--ceecccCCC-cccH
Confidence 457788865 5666544443332 33333333 34443 4566 799999986 6665
No 106
>PLN02224 methionine-tRNA ligase
Probab=51.29 E-value=5.6 Score=40.91 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=28.3
Q ss_pred cccccccCCCcccc---ccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~el---aR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+..+|.|-.+++.+ |.-++ .|++.|..+. +..+ .++| +|||||.+| .|+..|
T Consensus 324 v~~iGKDii~fH~i~wpa~l~~--~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 324 LHLIGKDILRFHAVYWPAMLMS--AGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred eEEEeecccccHHHHHHHHHHH--CCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 44667776664211 11111 2445554433 4554 4566 899999987 665543
No 107
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=51.27 E-value=2 Score=40.97 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCccccccccCcccCCC-Cccc---hhccccccccCCcccccccCCCceeEecCCHHHHHH
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPAL---IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 191 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-~p~~---l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~k 191 (292)
++.|. .+-.+|.||..|+.-...+++.+|+. +..- +.-.++.+-+|. .|||+-.++ .|.|.|==++..+
T Consensus 236 ~~~d~-~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~-~i~l~dllde~~~ 308 (354)
T PF00750_consen 236 YGFDK-IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGN-VITLDDLLDEAVE 308 (354)
T ss_dssp SS-SE-EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTS-STBHHHHHHHHHH
T ss_pred hcccc-EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCC-ceEHHHHHHHHHH
Confidence 44453 46689999999999999999999982 2222 222344444552 379999876 7877443333333
No 108
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.30 E-value=26 Score=36.87 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=19.1
Q ss_pred ccccccCCCceeEecCCHHHHHHHhhhccccCCcccHH
Q 022791 169 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 206 (292)
Q Consensus 169 ~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~ 206 (292)
.|||||.+| ..-|..+-+..---=+++|..|.+++++
T Consensus 709 EKMSKSTGN-fmTL~qaieKFgad~tRlalAdaGD~ve 745 (1080)
T KOG0437|consen 709 EKMSKSTGN-FMTLEQAIEKFGADGTRLALADAGDGVE 745 (1080)
T ss_pred hhhccccCC-eeeHHHHHHHhCccceeeeeecccCCcc
Confidence 799999887 4444333222222223345555555543
No 109
>PLN02610 probable methionyl-tRNA synthetase
Probab=47.77 E-value=7.1 Score=41.41 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=17.2
Q ss_pred Cccchh-ccccccccCCcccccccCCCceeEec
Q 022791 152 KPALIE-SSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 152 ~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
.|..+. |..+ .+.| +|||||.+| .|+..
T Consensus 332 ~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~ 360 (801)
T PLN02610 332 MMKTISVTEYL-NYEG--GKFSKSKGV-GVFGN 360 (801)
T ss_pred CCCEEEeccCE-ecCC--ceecCcCCc-ccCHH
Confidence 454443 3333 3455 799999986 66654
No 110
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.04 E-value=8.8 Score=38.96 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=12.0
Q ss_pred ccccccCCCceeEecC
Q 022791 169 GKMSASDPNSAIYVTD 184 (292)
Q Consensus 169 ~KMSkS~~~s~I~L~D 184 (292)
+|||||.+| .|+..+
T Consensus 332 ~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 332 QKMSKSRGN-VVDPDE 346 (558)
T ss_pred ccccccCCc-EEeHHH
Confidence 799999986 777654
No 111
>PLN02859 glutamine-tRNA ligase
Probab=42.89 E-value=9.1 Score=40.32 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=49.8
Q ss_pred ccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCC
Q 022791 99 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 176 (292)
Q Consensus 99 l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 176 (292)
.+||..--|.++ .|.+.. | |||..|.|...+-..=.-+.+.||...|...+-+ +.+++| .||||...
T Consensus 439 ~iyPtYdFA~~v----dD~leg---I-THvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~-rLn~~~--t~LSKRkl 505 (788)
T PLN02859 439 CIYPSYDYAHCI----VDSLEN---I-THSLCTLEFETRRASYYWLLDSLGLYQPYVWEYS-RLNVTN--TVMSKRKL 505 (788)
T ss_pred EEEecccccccc----cccccC---C-ceEeechhhhcCCHHHHHHHHHcCCCCCcEEeee-eECCCC--CcccCcCc
Confidence 358888776443 355442 3 7999999988877666667888888889888766 457887 79999974
No 112
>PLN02907 glutamate-tRNA ligase
Probab=31.71 E-value=13 Score=39.01 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=46.8
Q ss_pred CCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccC
Q 022791 101 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 175 (292)
Q Consensus 101 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 175 (292)
||..+-|.. ++|.+.. | |+|..|.|...+-..=.-+.+.||.++|....-.+ .++.| .||||++
T Consensus 390 ~PtY~fa~~----vdD~~~g---I-ThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~-l~~~~--~~lSKR~ 453 (722)
T PLN02907 390 YPTYDFACP----FVDALEG---V-THALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSR-LNFVY--TLLSKRK 453 (722)
T ss_pred eeccCCceE----EEcccCC---C-ceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEE-EcCCC--ccccccc
Confidence 888887743 3355442 3 79999999988877777788889998885554334 46776 6999997
No 113
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=30.88 E-value=37 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=17.4
Q ss_pred ChHHHHHHHHhhcCCCcccHHHHHHHH
Q 022791 230 DDAELEHIKKEYGAGGMLTGEVKQRLA 256 (292)
Q Consensus 230 ~~~~~eel~~~y~~g~l~~~~lK~~la 256 (292)
.+.+.+||.++|-+ ++..+++.+|+
T Consensus 30 ~G~s~eeI~~~yp~--Lt~~~i~aAl~ 54 (56)
T PF04255_consen 30 AGESPEEIAEDYPS--LTLEDIRAALA 54 (56)
T ss_dssp TT--HHHHHHHSTT----HHHHHHHHH
T ss_pred cCCCHHHHHHHCCC--CCHHHHHHHHH
Confidence 56789999999964 88999988775
No 114
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=24.91 E-value=1e+02 Score=25.63 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=46.4
Q ss_pred ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHH
Q 022791 158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 237 (292)
Q Consensus 158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel 237 (292)
..++++|+.- .|||.+-.+-.| |-++-.-| +.|.||++ |-+-|. +.-.-
T Consensus 51 ~tLv~~L~~l-~~~s~k~n~i~I-----PleVl~yI----------------ddGrNPd~-----ytke~l----e~~~~ 99 (147)
T KOG3046|consen 51 NTLVRGLQDL-DKLSSKLNDIQI-----PLEVLEYI----------------DDGRNPDL-----YTKEFL----EKCLA 99 (147)
T ss_pred HHHHHHhhhh-HHHHHhhccccC-----cHHHHHHH----------------hcCCCccH-----HHHHHH----HHHHH
Confidence 4678888773 688776532122 33444333 34778865 222231 11222
Q ss_pred HHhhcCCCcc-cHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022791 238 KKEYGAGGML-TGEVKQRLAKVLTELVERHQVARAAV 273 (292)
Q Consensus 238 ~~~y~~g~l~-~~~lK~~la~~i~~~l~pir~~~~~~ 273 (292)
...|..|+++ ...+++.+++.+.+.+=..-+.+..+
T Consensus 100 kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~yr~I 136 (147)
T KOG3046|consen 100 KNQYVKGKIDAFKKFRKHLAEELSQEFPELVDPYRSI 136 (147)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 3456668764 66788888888776554433333333
No 115
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=24.33 E-value=49 Score=30.28 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHhchhhhhhccCCCCce-eEecCCcccch---hh------hHhHHHhhhheeecceeeccccCCCCcccc
Q 022791 29 LSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGG---AF------YKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 98 (292)
Q Consensus 29 ~~~~~i~~~~~~~~~~~lA~Gldp~k~-~i~~qs~~~~~---~~------~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~ 98 (292)
.+++.+++. ++..+.++|+||.+- +-|..++|.+. .| |.+=.++ ++|.-.....|..-....++
T Consensus 86 PsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWldGMEI---TQFTYFQQvGGi~~~pv~~E 159 (283)
T PRK09348 86 PSPDNIQEL---YLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEV---TQFTYFQQVGGIECKPVTGE 159 (283)
T ss_pred CCCccHHHH---HHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEECCeee---eeeeeeeeeCCeecccccee
Confidence 456656554 455666899999877 77888888643 11 2222233 34433344434333444566
Q ss_pred ccCCc
Q 022791 99 VSFPP 103 (292)
Q Consensus 99 l~YP~ 103 (292)
++|=+
T Consensus 160 ITYGL 164 (283)
T PRK09348 160 ITYGL 164 (283)
T ss_pred eehhH
Confidence 76654
No 116
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=24.22 E-value=49 Score=30.19 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHhchhhhhhccCCCCce-eEecCCcccch---hh------hHhHHHhhhheeecceeeccccCCCCcccc
Q 022791 29 LSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGG---AF------YKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 98 (292)
Q Consensus 29 ~~~~~i~~~~~~~~~~~lA~Gldp~k~-~i~~qs~~~~~---~~------~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~ 98 (292)
.+++.+++. ++..+.++|+||.+- +-|..++|.+. .| |.+=.++ ++|.-.....|..-....|+
T Consensus 82 PsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWldGMEI---TQFTYFQQvGGi~~~pv~~E 155 (279)
T cd00733 82 PSPDNIQEL---YLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEV---TQFTYFQQVGGIPCKPISVE 155 (279)
T ss_pred CCCccHHHH---HHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCeee---eeeeeeeeeCCeecccccee
Confidence 456656554 455666899999877 77888888643 11 2222333 34433344434333445577
Q ss_pred ccCCc
Q 022791 99 VSFPP 103 (292)
Q Consensus 99 l~YP~ 103 (292)
++|=+
T Consensus 156 iTYGL 160 (279)
T cd00733 156 ITYGL 160 (279)
T ss_pred eehhH
Confidence 77754
No 117
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=23.98 E-value=48 Score=30.48 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHhchhhhhhccCCCCce-eEecCCcccc
Q 022791 29 LSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVG 65 (292)
Q Consensus 29 ~~~~~i~~~~~~~~~~~lA~Gldp~k~-~i~~qs~~~~ 65 (292)
-+++.+++. ++..+.|+|+||.+- +-|..++|.+
T Consensus 83 PsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEs 117 (293)
T TIGR00388 83 PSPDNIQEL---YLDSLRALGIDPTEHDIRFVEDNWEN 117 (293)
T ss_pred CCCccHHHH---HHHHHHHhCCCccccCeeEeecCCCC
Confidence 466666554 455666899999877 7788888864
No 118
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=21.62 E-value=1.3e+02 Score=25.43 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=38.7
Q ss_pred ccccccchhhhhhccChHHHHHHHHhhcCC-CcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791 215 LEVDIPVKYLSFFLEDDAELEHIKKEYGAG-GMLTGEVKQRLAKVLTELVERHQVARAA 272 (292)
Q Consensus 215 p~~~~~~~~l~~~~~~~~~~eel~~~y~~g-~l~~~~lK~~la~~i~~~l~pir~~~~~ 272 (292)
+.++-.+.|+.-.....-+.+++++.|.=| .+++.++++++.+.|.+.-+.|-++|-.
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~ 143 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYR 143 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 445555666665432345788899999766 3789999999999999887777776554
No 119
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=21.31 E-value=1.8e+02 Score=27.71 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred chhhHHhhcCcceEEEeecccccccc--ccCHHHHHHHHHhchhh-hhhccCCCCceeEecCCcc
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWK--NLSVEESQRLARENAKD-IIACGFDVTKTFIFSDFDY 63 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~--~~~~~~i~~~~~~~~~~-~lA~Gldp~k~~i~~qs~~ 63 (292)
|++++-.+.+| +++-.|+-=---+ +...++.-......... |+..|.||++++|-..|.-
T Consensus 114 ~~~~~a~~~~~--vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaG 176 (336)
T KOG1515|consen 114 FCTRLAAELNC--VVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAG 176 (336)
T ss_pred HHHHHHHHcCe--EEEecCcccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCcc
Confidence 45666665666 4443575211111 13334433333334443 9999999999888877753
No 120
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=27 Score=36.43 Aligned_cols=73 Identities=23% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCc--ccCCCCcc--chhccccccccCC
Q 022791 92 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP--RIGYHKPA--LIESSFFPALQGE 167 (292)
Q Consensus 92 ~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~--r~n~~~p~--~l~~~~lpgL~g~ 167 (292)
++.+.+..-||.---- +| .+ ...|| .+--|.||..-.=.|--+.. -||. .|. .+.+.++..-+|
T Consensus 532 GSMPYAq~HyPFenk~-~f----e~--~fPad---FIaEGlDQTRGWFYTL~VlsT~LF~k-ppfkNvIvnGlVLAeDG- 599 (1070)
T KOG0434|consen 532 GSMPYAQRHYPFENKE-EF----EE--NFPAD---FIAEGLDQTRGWFYTLLVLSTALFGK-PPFKNVIVNGLVLAEDG- 599 (1070)
T ss_pred CCCcchhhcCCccchH-HH----hh--cCchH---hhhhccccccchhhHHHHHHHHHcCC-CcchheeEeeeEEeccc-
Confidence 4556677777754321 11 11 12344 67789999765433333222 2343 232 234677777788
Q ss_pred cccccccCCC
Q 022791 168 TGKMSASDPN 177 (292)
Q Consensus 168 ~~KMSkS~~~ 177 (292)
+||||+..|
T Consensus 600 -~KMSKrlkN 608 (1070)
T KOG0434|consen 600 -KKMSKRLKN 608 (1070)
T ss_pred -HHHhhhhhc
Confidence 899999743
No 121
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.56 E-value=66 Score=31.77 Aligned_cols=9 Identities=56% Similarity=0.231 Sum_probs=8.3
Q ss_pred ccccccCCC
Q 022791 169 GKMSASDPN 177 (292)
Q Consensus 169 ~KMSkS~~~ 177 (292)
.|||||.+|
T Consensus 343 mKMsKSLGN 351 (578)
T KOG0436|consen 343 MKMSKSLGN 351 (578)
T ss_pred eecchhhcc
Confidence 799999987
No 122
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.22 E-value=1.1e+02 Score=18.73 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHHHHHHHHH
Q 022791 233 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 263 (292)
Q Consensus 233 ~~eel~~~y~~g~l~~~~lK~~la~~i~~~l 263 (292)
++.|+.+.++.-++...--|..|.+.|.+++
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4667777776545666666888888887764
Done!