Query 022791
Match_columns 292
No_of_seqs 175 out of 1184
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 1.3E-74 4.3E-79 551.4 8.2 282 2-287 125-406 (406)
2 3hzr_A Tryptophanyl-tRNA synth 100.0 6.2E-74 2.1E-78 543.9 8.8 282 2-287 105-386 (386)
3 3i05_A Tryptophanyl-tRNA synth 100.0 1.5E-73 5.1E-78 543.1 3.7 284 2-287 102-386 (395)
4 3hv0_A Tryptophanyl-tRNA synth 100.0 8.3E-73 2.9E-77 537.7 5.1 285 2-287 98-383 (393)
5 3foc_A Tryptophanyl-tRNA synth 100.0 7.1E-72 2.4E-76 536.9 9.3 286 2-287 115-450 (451)
6 3jxe_A Tryptophanyl-tRNA synth 100.0 9.6E-72 3.3E-76 529.8 8.1 272 2-287 96-370 (392)
7 1r6u_A Tryptophanyl-tRNA synth 100.0 5.1E-68 1.7E-72 510.1 7.6 288 2-289 132-421 (437)
8 1r6t_A Tryptophanyl-tRNA synth 100.0 9.6E-68 3.3E-72 514.2 8.1 288 2-289 179-468 (477)
9 2ip1_A Tryptophanyl-tRNA synth 100.0 2.2E-67 7.4E-72 506.2 9.1 283 2-287 126-412 (432)
10 3sz3_A Tryptophanyl-tRNA synth 100.0 2.1E-67 7.3E-72 492.5 -1.0 263 3-285 29-316 (341)
11 3a04_A Tryptophanyl-tRNA synth 100.0 2.6E-65 8.9E-70 484.1 8.3 273 2-286 93-371 (372)
12 3prh_A Tryptophanyl-tRNA synth 100.0 1E-65 3.5E-70 487.2 5.5 258 4-285 61-337 (388)
13 3n9i_A Tryptophanyl-tRNA synth 100.0 2.4E-66 8.1E-71 485.6 0.8 262 3-285 38-321 (346)
14 3tzl_A Tryptophanyl-tRNA synth 100.0 7.4E-64 2.5E-68 466.1 4.3 256 3-285 28-301 (322)
15 2yy5_A Tryptophanyl-tRNA synth 100.0 1E-63 3.5E-68 469.7 3.4 263 2-285 26-321 (348)
16 1i6k_A TRPRS, tryptophanyl-tRN 100.0 1.9E-63 6.6E-68 464.6 3.3 259 3-285 24-303 (328)
17 2g36_A Tryptophanyl-tRNA synth 100.0 5.4E-63 1.9E-67 463.4 4.6 263 4-285 36-317 (340)
18 1yi8_B Tryptophanyl-tRNA synth 100.0 5.1E-62 1.7E-66 458.6 4.0 265 2-285 44-327 (351)
19 2el7_A Tryptophanyl-tRNA synth 100.0 2.6E-61 8.9E-66 451.7 8.3 261 3-285 24-306 (337)
20 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.8E-60 9.7E-65 449.6 6.2 259 3-281 81-366 (373)
21 2cya_A Tyrosyl-tRNA synthetase 100.0 1.1E-58 3.9E-63 437.9 5.8 248 2-273 58-348 (364)
22 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-58 4.6E-63 438.8 5.6 256 2-281 57-371 (375)
23 2j5b_A Tyrosyl-tRNA synthetase 100.0 7.2E-58 2.4E-62 430.1 4.5 248 2-276 64-334 (348)
24 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.1E-57 7.3E-62 457.9 6.3 268 3-283 65-360 (690)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 3.5E-55 1.2E-59 408.6 6.2 243 3-272 56-321 (323)
26 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.5E-53 8.6E-58 394.4 5.8 238 2-272 51-308 (314)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 3.6E-53 1.2E-57 401.6 5.5 248 2-271 58-329 (372)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 5.1E-52 1.7E-56 396.3 5.4 259 3-283 63-352 (394)
29 2yxn_A Tyrosyl-tRNA synthetase 100.0 6E-52 2E-56 386.3 1.6 236 2-272 57-320 (322)
30 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.4E-50 4.7E-55 389.4 -0.8 244 2-284 61-326 (432)
31 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.1E-49 7.3E-54 399.7 7.4 245 3-275 407-673 (690)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 1.3E-48 4.5E-53 374.9 0.9 235 2-274 56-319 (432)
33 2pid_A Tyrosyl-tRNA synthetase 100.0 2.3E-48 8E-53 366.2 -0.3 237 2-274 70-341 (356)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 4.4E-47 1.5E-51 363.6 2.0 236 2-274 54-317 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 2.1E-46 7.1E-51 356.6 0.6 238 2-274 88-380 (392)
36 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1E-45 3.4E-50 354.9 3.1 237 2-274 56-318 (420)
37 2cfo_A Glutamyl-tRNA synthetas 97.3 6E-05 2.1E-09 73.4 2.0 68 126-195 205-276 (492)
38 1j09_A Glutamyl-tRNA synthetas 97.3 3.5E-05 1.2E-09 74.6 -0.0 180 3-199 24-276 (468)
39 1nzj_A Hypothetical protein YA 97.2 6E-05 2E-09 68.9 0.8 60 127-188 187-246 (298)
40 3al0_C Glutamyl-tRNA(Gln) amid 97.2 0.00041 1.4E-08 68.9 6.4 68 126-195 317-388 (592)
41 3afh_A Glutamyl-tRNA synthetas 97.0 0.00018 6.3E-09 69.9 1.7 66 126-195 213-284 (488)
42 2ja2_A Glutamyl-tRNA synthetas 96.8 0.00031 1E-08 68.4 1.6 67 127-195 211-286 (498)
43 3fnr_A Arginyl-tRNA synthetase 92.8 0.0092 3.1E-07 57.6 -2.3 57 127-184 239-298 (464)
44 2csx_A Methionyl-tRNA syntheta 92.0 0.012 4E-07 57.0 -2.8 53 127-183 253-307 (497)
45 2o5r_A Glutamyl-tRNA synthetas 91.3 0.019 6.4E-07 55.7 -2.1 68 126-195 220-291 (481)
46 2d5b_A Methionyl-tRNA syntheta 91.3 0.015 5.2E-07 56.1 -2.8 52 127-183 254-309 (500)
47 3kfl_A Methionyl-tRNA syntheta 89.6 0.034 1.2E-06 54.7 -2.0 51 127-183 297-351 (564)
48 1gax_A Valrs, valyl-tRNA synth 87.7 0.052 1.8E-06 56.2 -2.2 55 120-182 480-539 (862)
49 2x1l_A Methionyl-tRNA syntheta 87.4 0.032 1.1E-06 54.2 -3.8 52 127-182 268-321 (524)
50 4dlp_A Aminoacyl-tRNA syntheta 86.7 0.054 1.9E-06 52.9 -2.6 51 127-183 279-333 (536)
51 1ffy_A Isoleucyl-tRNA syntheta 86.7 0.17 5.6E-06 52.8 0.8 56 120-182 547-606 (917)
52 3u1f_A Methionyl-tRNA syntheta 85.1 0.21 7.2E-06 48.5 0.7 50 127-182 281-334 (542)
53 1ile_A Ilers, isoleucyl-tRNA s 85.1 0.11 3.7E-06 53.5 -1.5 52 127-182 547-602 (821)
54 1li5_A Cysrs, cysteinyl-tRNA s 84.8 0.086 3E-06 50.6 -2.3 51 127-182 223-277 (461)
55 3c8z_A Cysteinyl-tRNA syntheta 84.7 0.053 1.8E-06 51.3 -3.8 52 127-182 247-302 (414)
56 1irx_A Lysyl-tRNA synthetase; 83.3 0.059 2E-06 52.6 -4.2 48 129-177 235-286 (523)
57 4g6z_A Glutamate-tRNA ligase; 83.2 0.53 1.8E-05 45.5 2.5 68 126-195 222-293 (490)
58 3h99_A Methionyl-tRNA syntheta 83.1 0.091 3.1E-06 51.5 -3.0 52 127-182 303-356 (560)
59 1wz2_A Leucyl-tRNA synthetase; 81.8 0.18 6.2E-06 52.8 -1.5 56 120-182 602-661 (967)
60 1wkb_A Leucyl-tRNA synthetase; 80.7 0.18 6.1E-06 51.7 -1.9 57 120-183 602-662 (810)
61 1iq0_A Arginyl-tRNA synthetase 78.6 0.16 5.4E-06 50.3 -3.0 54 127-184 350-407 (592)
62 3foc_A Tryptophanyl-tRNA synth 78.0 0.52 1.8E-05 45.1 0.5 24 116-139 223-248 (451)
63 3tqo_A Cysteinyl-tRNA syntheta 74.6 0.18 6.1E-06 48.5 -3.8 51 127-182 226-280 (462)
64 4arc_A Leucine--tRNA ligase; l 74.4 0.88 3E-05 47.1 1.1 20 120-142 542-562 (880)
65 3aii_A Glutamyl-tRNA synthetas 73.6 0.13 4.3E-06 50.6 -5.2 67 100-177 270-336 (553)
66 4gri_A Glutamate--tRNA ligase; 71.7 0.61 2.1E-05 45.3 -0.8 50 126-177 231-280 (512)
67 3sp1_A Cysteinyl-tRNA syntheta 66.9 0.43 1.5E-05 46.3 -3.0 52 127-182 256-310 (501)
68 2v0c_A Aminoacyl-tRNA syntheta 64.3 2 7E-05 44.4 1.2 41 120-163 530-579 (878)
69 1rqg_A Methionyl-tRNA syntheta 64.2 1.5 5.1E-05 44.3 0.2 42 150-195 326-373 (722)
70 2zue_A Arginyl-tRNA synthetase 63.9 0.45 1.5E-05 47.4 -3.7 55 126-184 379-439 (629)
71 1qtq_A GLNRS, protein (glutami 52.4 0.8 2.7E-05 44.9 -4.0 49 126-177 225-274 (553)
72 1f7u_A Arginyl-tRNA synthetase 50.1 1.2 4.1E-05 44.2 -3.3 53 127-185 368-421 (607)
73 2hz7_A Glutaminyl-tRNA synthet 21.3 13 0.00045 38.2 -1.3 55 3-65 89-144 (851)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.3e-74 Score=551.43 Aligned_cols=282 Identities=44% Similarity=0.793 Sum_probs=262.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY 81 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~ 81 (292)
+++|||+++||+++|+|||+||+++++.+++++++|+++++++|+|||+||+|++||.||+|++ +++..+++|+|++|+
T Consensus 125 ~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~-~~~~~~~~L~r~~t~ 203 (406)
T 3tze_A 125 LCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH-HFEENILKISKTINL 203 (406)
T ss_dssp HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG-GGHHHHHHHHHTCBH
T ss_pred HHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH-HHHHHHHHHHhhCCH
Confidence 6899999889999999999999987669999999999999999999999999999999999986 889999999999999
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 161 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l 161 (292)
+++++++|+.++.++|+|+||+|||||+++++||.|+.+++ |+||||.||+||+++|||+|+|||+++|.++++++|
T Consensus 204 ~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l 280 (406)
T 3tze_A 204 NEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLL 280 (406)
T ss_dssp HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCC
T ss_pred HHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcc
Confidence 99999988888899999999999999999999999998877 699999999999999999999999999999999999
Q ss_pred ccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhh
Q 022791 162 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241 (292)
Q Consensus 162 pgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y 241 (292)
|||+|+++|||||+|+|+|+|+|+|++|++|||+||+|||+.+++++++.||||++|++++|+++|+.+++++++|+++|
T Consensus 281 ~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y 360 (406)
T 3tze_A 281 PDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGY 360 (406)
T ss_dssp CCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHH
Confidence 99999767999999888999999999999999999999999998888889999999999999999976678999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 242 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 242 ~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
++|+++|++||+.||+.|+++|+|||+||++++++.|++|+..+++
T Consensus 361 ~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 361 IKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999999987653
No 2
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=6.2e-74 Score=543.93 Aligned_cols=282 Identities=30% Similarity=0.629 Sum_probs=267.4
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY 81 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~ 81 (292)
+++|||+++||+++|+|+|+||++.++.+++++++|+++++++|+|||+||+|++||.||+|++ .++..+++|+|++|+
T Consensus 105 ~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~~l~r~~t~ 183 (386)
T 3hzr_A 105 FARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKATAY 183 (386)
T ss_dssp HHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-HHHHHHHHHHHHCBH
T ss_pred HHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-HHHHHHHHHHhhccH
Confidence 6899999889999999999999998669999999999999999999999999999999999986 888999999999999
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcccc
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 161 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~l 161 (292)
+++++++|+.++.++|+|+||+|||||+++++|||||.++ ++|+||||.||+||+++|||+|+|||+++|.++++++|
T Consensus 184 ~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l 261 (386)
T 3hzr_A 184 NVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV 261 (386)
T ss_dssp HHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCC
T ss_pred HHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHHHcCCCCceEeecCee
Confidence 9999999888889999999999999999999999999986 22799999999999999999999999999988899999
Q ss_pred ccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhh
Q 022791 162 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 241 (292)
Q Consensus 162 pgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y 241 (292)
|||+|+ +|||||+++|+|+|+|+|++|++|||++||||++.|.+++++.+|+|+++++++|+.+|+.+++++++++++|
T Consensus 262 ~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~ 340 (386)
T 3hzr_A 262 PLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKY 340 (386)
T ss_dssp CCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred eCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHH
Confidence 999997 4999999889999999999999999998999999999999999999999999999999976678999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 242 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 242 ~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
++|+++|++||+.||++|+++|+|||+||++++++.|++++..+++
T Consensus 341 ~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 341 SKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999987654
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=1.5e-73 Score=543.11 Aligned_cols=284 Identities=54% Similarity=0.918 Sum_probs=229.3
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhheee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY 81 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~ 81 (292)
+++|||+++|++++|+|||+|++++++.+++++++|+++++++|+|||+||+|++||.||+|.+ .|+..+++|+|++|+
T Consensus 102 ~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~v~~l~r~~t~ 180 (395)
T 3i05_A 102 FTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAKIERAFTA 180 (395)
T ss_dssp HHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-TSHHHHHHHHHHSBH
T ss_pred HHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-HHHHHHHHHHhhCCH
Confidence 6899999889999999999988887669999999999999999999999999999999999986 788999999999999
Q ss_pred cceeeccccCCCCccccccCCccccCCCCCCCCCccccCC-CcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791 82 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 160 (292)
Q Consensus 82 ~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~ 160 (292)
+++++++|+.++.++|+|+||+|||||++.++||||++++ .+.+|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus 181 ~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~ 260 (395)
T 3i05_A 181 SQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKF 260 (395)
T ss_dssp HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECC
T ss_pred HHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCCCceeecccc
Confidence 9999999888889999999999999999999999999998 223479999999999999999999999999999999999
Q ss_pred cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791 161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240 (292)
Q Consensus 161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~ 240 (292)
||||+|+++||||| ++|+|+|+|+|++|++|||++|+||++.+.++++++||||++|++|+|+++|+.+++++++++++
T Consensus 261 l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~ 339 (395)
T 3i05_A 261 FPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKE 339 (395)
T ss_dssp CCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-
T ss_pred ccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHH
Confidence 99999987899999 77899999999999999999899999998888899999999999999999997667899999999
Q ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
|++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus 340 y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 386 (395)
T 3i05_A 340 YMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386 (395)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcc
Confidence 99999999999999999999999999999999999999999987765
No 4
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=8.3e-73 Score=537.66 Aligned_cols=285 Identities=53% Similarity=0.933 Sum_probs=253.6
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 80 (292)
+++|||+++|+.++|+|||+||++.++ .+++++++++++++++|+|||+||+|++||.||+|++ .++..+++|+|++|
T Consensus 98 ~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~~~~l~r~~t 176 (393)
T 3hv0_A 98 FTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKIS 176 (393)
T ss_dssp HHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH-HHHHHHHHHHHHSB
T ss_pred HHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH-HHHHHHHHHHccCC
Confidence 589999988999999999999987764 9999999999999999999999999999999999985 56888999999999
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccc
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 160 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~ 160 (292)
+++++++.|+.++.++|+|+||+|||||+++.+||.++..++|++|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus 177 ~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~ 256 (393)
T 3hv0_A 177 CSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIF 256 (393)
T ss_dssp HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECC
T ss_pred HHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCceeeccCc
Confidence 99999999888889999999999999988888888777778888899999999999999999999999999999999999
Q ss_pred cccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHh
Q 022791 161 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 240 (292)
Q Consensus 161 lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~ 240 (292)
||||+|+++|||||++||+|+|+|+|++|++|||+||+||++.+.+++++.||||++|++|+|+++|+.+++++++++++
T Consensus 257 l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~ 336 (393)
T 3hv0_A 257 LPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKK 336 (393)
T ss_dssp CCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHH
Confidence 99999987899999999999999999999999999999999988887778899999999999999997678899999999
Q ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 241 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 241 y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
|++|+++|++||+.||+.|+++|+|+|+||++++++.|++++..++.
T Consensus 337 y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 383 (393)
T 3hv0_A 337 YSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE 383 (393)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH
Confidence 99999999999999999999999999999999999999999988764
No 5
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=7.1e-72 Score=536.85 Aligned_cols=286 Identities=48% Similarity=0.809 Sum_probs=269.2
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhhhhe
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCV 79 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~~ 79 (292)
+++|||+++|++++|+|+|+||++.++ .+++++++|+++++++|+|||+||+|++||.||+|++ .+|+..+.+|+|++
T Consensus 115 ~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~ 194 (451)
T 3foc_A 115 FTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRML 194 (451)
T ss_dssp HHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTC
T ss_pred HHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhC
Confidence 589999988999999999999999764 8999999999999999999999999999999999987 78999999999999
Q ss_pred eecceeeccccCCCCccccccCCccccCCCCCCCC----------------------------------CccccCCCc--
Q 022791 80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKDH-- 123 (292)
Q Consensus 80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~----------------------------------~Dil~~~ad-- 123 (292)
|+++++++.++.++.++|+|+||+|||||++++.| .|||+|+++
T Consensus 195 Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 274 (451)
T 3foc_A 195 PISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVV 274 (451)
T ss_dssp CHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHH
T ss_pred CHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhcccc
Confidence 99999999998888999999999999999988777 268888887
Q ss_pred ------------ccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHH
Q 022791 124 ------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 191 (292)
Q Consensus 124 ------------~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~k 191 (292)
++|+||||+||+||+|+||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++
T Consensus 275 ~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~k 354 (451)
T 3foc_A 275 EELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKN 354 (451)
T ss_dssp HHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHHH
T ss_pred hhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHHH
Confidence 78899999999999999999999999999999999999999998789999999999999999999999
Q ss_pred HhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791 192 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 271 (292)
Q Consensus 192 KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~ 271 (292)
|||++|+||+..+.++++++|+||++|++|+|+.+|+.+++++++++++|++|+++|++||+.|++.|+++|+|||+||+
T Consensus 355 KI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~ 434 (451)
T 3foc_A 355 KINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRD 434 (451)
T ss_dssp HHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999888888899999999999999999976778999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcccCC
Q 022791 272 AVTDEMVDAFMAVRPL 287 (292)
Q Consensus 272 ~~~~~~l~~~l~~~~~ 287 (292)
+++++.|++++..+++
T Consensus 435 ~l~~d~v~~f~~~~~~ 450 (451)
T 3foc_A 435 KVDTTMIESFTVKKEL 450 (451)
T ss_dssp TCCHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhCcccC
Confidence 9999999999987764
No 6
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.6e-72 Score=529.83 Aligned_cols=272 Identities=39% Similarity=0.683 Sum_probs=238.8
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 80 (292)
+++|||+++|+.++|+|||+||+++++ .+++++++++++++++|+|||+||+|++||.||+|++ ++..+..|++++|
T Consensus 96 ~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~l~~~~t 173 (392)
T 3jxe_A 96 ATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKIN 173 (392)
T ss_dssp HHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH--HHHHHHHHHHHSB
T ss_pred HHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH--HHHHHHHHHhhCC
Confidence 579999977999999999999999865 8999999999999999999999999999999999986 8888999999999
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCC-CcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 159 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~ 159 (292)
++++++..+++++.++|+|+||+|||| |||.++ + |+||||.||+||+++||++|+|||+++|.+++++
T Consensus 174 ~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~ 242 (392)
T 3jxe_A 174 FSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSK 242 (392)
T ss_dssp HHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEEC
T ss_pred HHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCCCCeeeecc
Confidence 999999988888899999999999999 999994 5 6899999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-cChHHHHHHH
Q 022791 160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIK 238 (292)
Q Consensus 160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~eel~ 238 (292)
+||||+|+++|||||+|||+|+|+|+|++|++|||+||+||+..+.+++++.++||++|++|+|+.+|+ .+++++++++
T Consensus 243 ~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~ 322 (392)
T 3jxe_A 243 FVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERY 322 (392)
T ss_dssp CCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHH
T ss_pred cccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHH
Confidence 999999987899999999999999999999999999999999988888888899999999999999986 4678999999
Q ss_pred HhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 239 ~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
++|.+|+++|++||+.||++|+++|+|||+||++++ ++|++++..+++
T Consensus 323 ~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 323 YACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 999999999999999999999999999999999999 699999988764
No 7
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=5.1e-68 Score=510.10 Aligned_cols=288 Identities=63% Similarity=1.074 Sum_probs=262.2
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch--hhhHhHHHhhhhe
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG--AFYKNMVKVAKCV 79 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~--~~~~~~~~l~r~~ 79 (292)
+++|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++. +++..+++|+||+
T Consensus 132 ~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~~v~rm~ 211 (437)
T 1r6u_A 132 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 211 (437)
T ss_dssp HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhHHHHHHHHHHHHhhc
Confidence 57999997799999999999999985589999999999999999999999999999999999863 7899999999999
Q ss_pred eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791 80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 159 (292)
Q Consensus 80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~ 159 (292)
+++++++++++.++.++|+|+||+|||||++..+++-.+..+...+|+||||.||+||++++|++|+|||+++|.+++++
T Consensus 212 ~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~p 291 (437)
T 1r6u_A 212 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHST 291 (437)
T ss_dssp BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEEC
T ss_pred cHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecc
Confidence 99999998887788999999999999995544444333332333448999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791 160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239 (292)
Q Consensus 160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~ 239 (292)
+||||+|+++|||||++||+|+|+|+|++|++||++|||||+..+.+++++.|+||++|+++.|+++|+.+++++++|++
T Consensus 292 ll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~ 371 (437)
T 1r6u_A 292 FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK 371 (437)
T ss_dssp CCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred cccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHH
Confidence 99999997789999999989999999999999999999999988888888899999999999999999767889999999
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q 022791 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 289 (292)
Q Consensus 240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~~ 289 (292)
+|.+|+++++++|+.||+.|+++++|+|+||++++++.+++++..+++..
T Consensus 372 ~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 421 (437)
T 1r6u_A 372 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSF 421 (437)
T ss_dssp HHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999899999999999999999999999999999988999999887653
No 8
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=9.6e-68 Score=514.19 Aligned_cols=288 Identities=63% Similarity=1.082 Sum_probs=262.8
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc--hhhhHhHHHhhhhe
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 79 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~--~~~~~~~~~l~r~~ 79 (292)
+++|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++ .+++..+++|+|++
T Consensus 179 ~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~~ 258 (477)
T 1r6t_A 179 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 258 (477)
T ss_dssp HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhhc
Confidence 5799999779999999999999998558999999999999999999999999999999999986 37999999999999
Q ss_pred eecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhcc
Q 022791 80 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 159 (292)
Q Consensus 80 t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~ 159 (292)
|++++++++++.++.++|+|+||+|||||++..+++.++..+...+|+||||.||++|++++|++|+|||+++|.+++++
T Consensus 259 t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~p 338 (477)
T 1r6t_A 259 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHST 338 (477)
T ss_dssp BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEEC
T ss_pred cHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecc
Confidence 99999998887788999999999999996555555433332333448999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHHHH
Q 022791 160 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 239 (292)
Q Consensus 160 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel~~ 239 (292)
+||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.++++..|+||++|+++.|+++|+.+++++++|++
T Consensus 339 ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~ 418 (477)
T 1r6t_A 339 FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK 418 (477)
T ss_dssp CCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred cccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999997789999999989999999999999999999999988888888899999999999999999767889999999
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q 022791 240 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 289 (292)
Q Consensus 240 ~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~~~ 289 (292)
+|.+|+++++++|+.||+.|+++|+|||+||++++++.|++++..+++..
T Consensus 419 ~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~ 468 (477)
T 1r6t_A 419 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAA 468 (477)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC-
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999899999999999999999999999999999988999998887653
No 9
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.2e-67 Score=506.18 Aligned_cols=283 Identities=54% Similarity=0.918 Sum_probs=253.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 80 (292)
+++|||+.+||.++|+|||+||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++.+++..+.+++||++
T Consensus 126 ~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v~rm~~ 205 (432)
T 2ip1_A 126 FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205 (432)
T ss_dssp HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHHHhhhc
Confidence 578999977999999999999999865 8999999999999999999999999999999999987788888999999999
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCcccc---CCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE 157 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~ 157 (292)
++++++++|+.++.++|+|+||+|||||+++.+++.++. +++ |+||||.||+||++++|++|+|||+++|.+++
T Consensus 206 ~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~ 282 (432)
T 2ip1_A 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKYSKPALLH 282 (432)
T ss_dssp HHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCCCCceeec
Confidence 999999888778889999999999999777666654443 444 79999999999999999999999999999989
Q ss_pred ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhccChHHHHHH
Q 022791 158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 237 (292)
Q Consensus 158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eel 237 (292)
+++||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.||.+|..+++++++|
T Consensus 283 ~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel 362 (432)
T 2ip1_A 283 SRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKEC 362 (432)
T ss_dssp ECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHH
T ss_pred cccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHH
Confidence 99999999987899999998899999999999999999999999888888888999999999999999987678899999
Q ss_pred HHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccCC
Q 022791 238 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287 (292)
Q Consensus 238 ~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~~ 287 (292)
+++|.+|+++|+++|+.||+.|+++++|+|+||++++++.++++...+++
T Consensus 363 ~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~ 412 (432)
T 2ip1_A 363 YDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412 (432)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 99999998999999999999999999999999999999778887766654
No 10
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.1e-67 Score=492.49 Aligned_cols=263 Identities=17% Similarity=0.246 Sum_probs=233.7
Q ss_pred hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
.+| ||+. +.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .++
T Consensus 29 ~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~~el~~~l~~~~~~~ 105 (341)
T 3sz3_A 29 RQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMG 105 (341)
T ss_dssp GGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhhHHHHHHHHhhccHH
Confidence 467 9994 667888999999998 589999999999999999999999999999999999976 3233 379
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 150 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--- 150 (292)
+|+|+++++++..+++ ++.++|+|+||+|||| |||.|++| +||||.||+||+|+|||+|+|||+
T Consensus 106 ~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~ad---~vpvG~DQ~~hlel~Rdia~rfn~~yg 172 (341)
T 3sz3_A 106 ELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGAH---QVPVGSDQKQHLELARDIATRFNNIYS 172 (341)
T ss_dssp HHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCCC---EEEeccchHHHHHHHHHHHHHhchhcc
Confidence 9999999999887653 5789999999999999 99999995 899999999999999999999982
Q ss_pred ------CCccchh---ccccccccCCcccccccCC--CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccc
Q 022791 151 ------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 219 (292)
Q Consensus 151 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~ 219 (292)
+.|..+. +++||||+|+++|||||+| +|+|+|+|+|++|++|||+ |+||+..+.+++++++++|++++
T Consensus 173 ~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~ 251 (341)
T 3sz3_A 173 PEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIAN 251 (341)
T ss_dssp SSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHH
T ss_pred CCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchhH
Confidence 2444333 5799999766689999998 6899999999999999999 99999875555677899999999
Q ss_pred cchhhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 220 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 220 ~~~~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
+|.|++.| +++++++++++|. |+++|++||+.|++.|+++|+|||+||+++.++ +|+++|..+
T Consensus 252 l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G 316 (341)
T 3sz3_A 252 LMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG 316 (341)
T ss_dssp HHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999 5678999999999 668999999999999999999999999999876 899999875
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.6e-65 Score=484.15 Aligned_cols=273 Identities=26% Similarity=0.362 Sum_probs=241.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccchhhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 80 (292)
+.+|+|+. |+.++|+||||||+|++. .+++.++.++++++++|+||||||+|++||.||++. ..++..+..+++.+|
T Consensus 93 ~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~-~~~~~l~~~~~~~~~ 170 (372)
T 3a04_A 93 QLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG-TPYFRLIQLFSGKVT 170 (372)
T ss_dssp HHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC-HHHHHHHHHHTTSSC
T ss_pred HHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch-HHHHHHHHHHHhhhh
Confidence 35679985 999999999999999855 566779999999999999999999999999999864 456667788899999
Q ss_pred ecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----CCCccch
Q 022791 81 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALI 156 (292)
Q Consensus 81 ~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n----~~~p~~l 156 (292)
+.++.+..+ ..+.|.++||+|||||+++.+++.++.|++ |+||||+||+||+|+|||+|+||| .++|..+
T Consensus 171 ~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~ 244 (372)
T 3a04_A 171 AAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDLADRMAGVVELERPAST 244 (372)
T ss_dssp HHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEE
T ss_pred HHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHHHHHhcCcccccChhhh
Confidence 998887754 567899999999999655555554455666 799999999999999999999998 4789999
Q ss_pred hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh-hccChHHHH
Q 022791 157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-FLEDDAELE 235 (292)
Q Consensus 157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~e 235 (292)
+++++|||+| .|||||+|||+|+|+|+|++|++|||+ |+||++.+.+++++.||+|++|++|.++.+ +..++++++
T Consensus 245 ~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ 321 (372)
T 3a04_A 245 YHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVK 321 (372)
T ss_dssp EECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHH
T ss_pred hhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHH
Confidence 9999999999 699999999999999999999999999 999999999999999999999999987443 445788999
Q ss_pred HHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccC
Q 022791 236 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP 286 (292)
Q Consensus 236 el~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~~ 286 (292)
+++++|++|+++||+||+.|++.|+++|+|+|+||++..+ ++++++....
T Consensus 322 ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~~r 371 (372)
T 3a04_A 322 HIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEPPR 371 (372)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCCCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcccC
Confidence 9999999999999999999999999999999999998776 8888887653
No 12
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1e-65 Score=487.20 Aligned_cols=258 Identities=20% Similarity=0.233 Sum_probs=220.8
Q ss_pred hhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHhh
Q 022791 4 KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA 76 (292)
Q Consensus 4 ~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~ 76 (292)
.|||+ |+.++|+||||||+|+ +.+++.+++++++++++|+|||+||+|++||.||+|++| |.+. .+++|+
T Consensus 61 ~~LQ~--~~~~~~~IaD~hAlt~-~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~ 137 (388)
T 3prh_A 61 VELQH--DYNSYFCIVDQHAITV-PQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELE 137 (388)
T ss_dssp HHTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHH
Confidence 34897 7778899999999998 689999999999999999999999999999999999986 3333 489999
Q ss_pred hheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC------
Q 022791 77 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------ 150 (292)
Q Consensus 77 r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~------ 150 (292)
|+++|+++.+.. ++.++|+|+||+|||| |||.|++| +||||+||+||+|+|||+|+|||+
T Consensus 138 R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~ad---~vPvG~DQ~~hleltRdia~rfn~~y~~~f 203 (388)
T 3prh_A 138 RMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGTD---LVPPGEDQKQHLELTRNLAERFNKKYNDIF 203 (388)
T ss_dssp TTC-------------CCBHHHHSCHHHHHH--------HHHTTTCC---EECCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred hhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHHHHHhCcccCCCc
Confidence 999999877542 6789999999999999 99999995 899999999999999999999995
Q ss_pred CCccchh---ccccccccCCcccccccCC--CceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhh
Q 022791 151 HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 225 (292)
Q Consensus 151 ~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~ 225 (292)
+.|..+. +++||||+|+++|||||+| +|+|+|+|+|++|++|||+ |+||+...++ ++++++|++++++.|++
T Consensus 204 ~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~~i~~ 280 (388)
T 3prh_A 204 TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLLTIYS 280 (388)
T ss_dssp CCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHHHHHH
T ss_pred ccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHHHHHH
Confidence 2243332 4789999887789999997 6899999999999999999 9999865432 44689999999999999
Q ss_pred hhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhccc
Q 022791 226 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 285 (292)
Q Consensus 226 ~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~~l~~~ 285 (292)
.+ +++++++++++|. |. +|++||+.|+++|+++|+|||+||++++++ +|+++|..+
T Consensus 281 ~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G 337 (388)
T 3prh_A 281 IL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG 337 (388)
T ss_dssp HH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 98 5678999999999 76 999999999999999999999999999876 899998865
No 13
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=2.4e-66 Score=485.63 Aligned_cols=262 Identities=17% Similarity=0.255 Sum_probs=231.2
Q ss_pred hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
.+| ||+ ++.++|+||||||+|+ ..+++.+++++++++++|+|||+||+|++||.||+|++| |.+. .++
T Consensus 38 ~~~~~lQ~--~~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~~el~~~l~~~~~~~ 114 (346)
T 3n9i_A 38 RQWVQMQD--DYDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFG 114 (346)
T ss_dssp HHHHTTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHh--hCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccchHHHHHHHHHhhHH
Confidence 577 898 4678899999999997 589999999999999999999999999999999999986 3233 379
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC---
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 150 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~--- 150 (292)
+|+|+++++++..+. .++.++|+|+||+|||| |||.|++| +||||.||+||+|+|||+|+|||+
T Consensus 115 ~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~ad---~vpvG~DQ~~hleltRdia~rfn~~yg 181 (346)
T 3n9i_A 115 ELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQTN---QVPVGEDQKQHLELSRDIASRFNNLYG 181 (346)
T ss_dssp HHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCce---EEEeccchHHHHHHHHHHHHHhccccC
Confidence 999999999887654 25689999999999999 99999995 899999999999999999999993
Q ss_pred ---CCccchh---ccccccccCCcccccccCCC--ceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791 151 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 222 (292)
Q Consensus 151 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~ 222 (292)
+.|..+. +++||||+|+++|||||+|| |+|+|+|+|++|++|||+ |+||+..+.+++++.+++|++++++.
T Consensus 182 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~ 260 (346)
T 3n9i_A 182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLD 260 (346)
T ss_dssp SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHH
T ss_pred CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHH
Confidence 4565444 37999997666899999986 899999999999999999 99999864344567789999999999
Q ss_pred hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
|++.| +++++++++++|.+| ++++||+.|+++|+++|+|||+||+++.++ +|+++|..|
T Consensus 261 ~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 261 ILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp HHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99988 557899999999865 699999999999999999999999999976 999999875
No 14
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=7.4e-64 Score=466.15 Aligned_cols=256 Identities=17% Similarity=0.206 Sum_probs=228.8
Q ss_pred hhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHHh
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKV 75 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l 75 (292)
.+|||+ |+.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+.+|
T Consensus 28 ~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l 104 (322)
T 3tzl_A 28 MVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLL 104 (322)
T ss_dssp HHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHGGGCBHHHH
T ss_pred HHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchhHHHHHHHHhccCcHHHH
Confidence 345999 88899999999999975 79999999999999999999999999999999999986 2222 37899
Q ss_pred hhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC-----
Q 022791 76 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----- 150 (292)
Q Consensus 76 ~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~----- 150 (292)
+|++++|+.... .++.++|+|+||+|||| |||.|+++ +||||.||+||+++|||+|+|||+
T Consensus 105 ~r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~ 170 (322)
T 3tzl_A 105 ERAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDTR---IVPVGKDQIQHVEIARDIALKVNNEWGEI 170 (322)
T ss_dssp HSCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCSC
T ss_pred HhhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCCc---EEEeccchHHHHHHHHHHHHHhcccccCC
Confidence 999999875443 35789999999999999 99999995 899999999999999999999986
Q ss_pred -CCccchh---ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791 151 -HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 226 (292)
Q Consensus 151 -~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 226 (292)
++|..++ +++||||+| +|||||++| +|+|+|+|++|++||++ |+|||..+. ..+||+++++++|+++
T Consensus 171 f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~~-----~~~~~~~~~v~~~~~~ 241 (322)
T 3tzl_A 171 FTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTALE-----DPKDHENCNIFKIAKL 241 (322)
T ss_dssp SCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCTT-----SCCCGGGCHHHHHHGG
T ss_pred CCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCcccc-----CCCCCcchhHHHHHHH
Confidence 5564433 799999999 799999987 89999999999999999 999997652 3578999999999999
Q ss_pred hccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 227 ~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
|+ +++++++++++|.+|+++|+++|+.||+.|+++|+|||+||++++++ +|+++|..+
T Consensus 242 ~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G 301 (322)
T 3tzl_A 242 FL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG 301 (322)
T ss_dssp GC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 96 56789999999999889999999999999999999999999999986 899999875
No 15
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=1e-63 Score=469.72 Aligned_cols=263 Identities=18% Similarity=0.238 Sum_probs=229.4
Q ss_pred chhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hH
Q 022791 2 FTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM 72 (292)
Q Consensus 2 ~~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~ 72 (292)
+.+| ||+ |+.++|+||||||+|++ .+++++++++++++++|+||||||+|+.||.||+|++| |++. .+
T Consensus 26 l~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~w~l~~~~~~ 102 (348)
T 2yy5_A 26 MQSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNL 102 (348)
T ss_dssp GGGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHHHHHHHHHHHHHSBH
T ss_pred HHHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCcccchhHHHHHHHhhccH
Confidence 3577 998 67789999999999985 89999999999999999999999999999999999976 3333 37
Q ss_pred HHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc
Q 022791 73 VKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 148 (292)
Q Consensus 73 ~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~ 148 (292)
.+|+|++++++..++.++ .++.++|+|+||+|||| |||.|++| +||||.||+||+|++|++|+||
T Consensus 103 ~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a~---~vpvG~DQ~~~lel~Rdia~r~ 171 (348)
T 2yy5_A 103 GELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQPD---IVPVGNDQKQHLELTRDLAQRI 171 (348)
T ss_dssp HHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCCS---EEECCGGGHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCcc---EEEecccHHHHHHHHHHHHHHh
Confidence 999999999988765432 45789999999999999 99999995 8999999999999999999999
Q ss_pred C------CCCccchh---ccccccccCCcccccccCCCc--eeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791 149 G------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 217 (292)
Q Consensus 149 n------~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s--~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~ 217 (292)
| +++|..++ +++||||+||++|||||++|+ +|+|+|+|++|++|||+ |+||+..+.. ++++++|++
T Consensus 172 n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v 248 (348)
T 2yy5_A 172 QKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGV 248 (348)
T ss_dssp HHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHH
T ss_pred hhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCch
Confidence 8 56787766 599999999888999999985 99999999999999999 9999965433 346778999
Q ss_pred cccchhhhhhccChHHHH---------HHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc
Q 022791 218 DIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 285 (292)
Q Consensus 218 ~~~~~~l~~~~~~~~~~e---------el~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~~~ 285 (292)
++++.|+++| ++++++ +|+++|. | ++|+++|+.||+.|+++|+|||+||+++.+..|+++|..+
T Consensus 249 ~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~d~~~~~~l~~G 321 (348)
T 2yy5_A 249 TNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQISREQVFNCLQAG 321 (348)
T ss_dssp HHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 9999999999 567899 9999999 7 8999999999999999999999999999433599998865
No 16
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=1.9e-63 Score=464.59 Aligned_cols=259 Identities=21% Similarity=0.277 Sum_probs=230.4
Q ss_pred hhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHH
Q 022791 3 TKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 73 (292)
Q Consensus 3 ~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 73 (292)
.+| ||+ |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .++
T Consensus 24 ~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~~~~l~w~l~~~~~~~ 100 (328)
T 1i6k_A 24 RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIG 100 (328)
T ss_dssp HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhhhhHHHHHHhccccHH
Confidence 467 588 7888999999999998 699999999999999999999999999999999999876 3333 378
Q ss_pred HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC----
Q 022791 74 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---- 149 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n---- 149 (292)
+|+|+++|++..++ + ++.++|+|+||+|||| |||.|+++ +||||.||+||++++|++|+|||
T Consensus 101 ~l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~~---~vpvG~DQ~~~iel~Rdia~r~n~~yg 166 (328)
T 1i6k_A 101 ELERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYG 166 (328)
T ss_dssp HHHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCCC---EEecccchHHHHHHHHHHHHHhCcccc
Confidence 99999999987654 2 6789999999999999 99999995 89999999999999999999999
Q ss_pred --CCCccchh---ccccccccCCcccccccCCCce--eEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791 150 --YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 222 (292)
Q Consensus 150 --~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~ 222 (292)
+++|..+. +++||||+||++|||||++|++ |+|+|+|++|++|||+ |+|||..+.. ++++++|++++++.
T Consensus 167 ~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~~ 243 (328)
T 1i6k_A 167 ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLN 243 (328)
T ss_dssp SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHHH
T ss_pred cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHHH
Confidence 45676554 6999999998889999999866 9999999999999999 9999965432 34567899999999
Q ss_pred hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhccc
Q 022791 223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 285 (292)
Q Consensus 223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~~l~~~ 285 (292)
|+++| +++++++|+++|. | ++|+++|+.||+.|+++|+|||+||+++.++ .|+++|..+
T Consensus 244 ~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g 303 (328)
T 1i6k_A 244 IYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG 303 (328)
T ss_dssp HHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred HHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence 99999 5678999999999 7 8999999999999999999999999999976 599988765
No 17
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-63 Score=463.45 Aligned_cols=263 Identities=20% Similarity=0.254 Sum_probs=229.7
Q ss_pred hh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hHHH
Q 022791 4 KY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 74 (292)
Q Consensus 4 ~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 74 (292)
+| ||++ |+.++++||||||+|+++.+++.+++++++++++|+|||+||+|++||.||+|++| |.+. ++.+
T Consensus 36 ~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~~~l~~~~~v~~ 114 (340)
T 2g36_A 36 NWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSR 114 (340)
T ss_dssp HHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCchHHHHHHHHHHHccCCHHH
Confidence 55 9995 89999999999999985588999999999999999999999999999999999976 2233 4899
Q ss_pred hhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCC----
Q 022791 75 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 150 (292)
Q Consensus 75 l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~---- 150 (292)
|.|++++++.+.+.+..++.++|+|+||+|||| |||.|+++ +||||.||+||+++|||+|+|||+
T Consensus 115 l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~ 183 (340)
T 2g36_A 115 LERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKAE---GVPVGEDQVYHIELTREIARRFNYLYDE 183 (340)
T ss_dssp HHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTCS---EEEECGGGHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCCC---EEEcccchHHHHHHHHHHHHHhhhhccc
Confidence 999999998443443346789999999999999 99999995 899999999999999999999973
Q ss_pred --CCccch--hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhh
Q 022791 151 --HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 226 (292)
Q Consensus 151 --~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 226 (292)
++|..+ ++++||||+| .|||||++| +|+|+|||++|++||++ |+||+.. +++..+++|++++++.|+++
T Consensus 184 ~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~~~ 256 (340)
T 2g36_A 184 VFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYHQA 256 (340)
T ss_dssp CCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHHHH
T ss_pred ccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHHHH
Confidence 567643 4799999998 499999986 89999999999999999 9999865 23456799999999999999
Q ss_pred hccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 227 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 227 ~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
|+.+.+++++|+++|.+|+++++++|+.||+.|+++|+|||+||+++.++ +|+++|..+
T Consensus 257 f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g 317 (340)
T 2g36_A 257 FDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG 317 (340)
T ss_dssp TTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 97556778999999999989999999999999999999999999999987 899999865
No 18
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=5.1e-62 Score=458.63 Aligned_cols=265 Identities=24% Similarity=0.285 Sum_probs=236.2
Q ss_pred chhh--HHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---hH
Q 022791 2 FTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM 72 (292)
Q Consensus 2 ~~~~--lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~ 72 (292)
+.+| ||++ +.++++||||||+++++.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+
T Consensus 44 l~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v 121 (351)
T 1yi8_B 44 LQNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTV 121 (351)
T ss_dssp HHHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEGGGCTHHHHHHHHHHTTSBH
T ss_pred HHHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEcCchhhHHHHHHHHhccCCH
Confidence 3578 9985 5678888999999986699999999999999999999999999999999999976 2233 48
Q ss_pred HHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC---
Q 022791 73 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 149 (292)
Q Consensus 73 ~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n--- 149 (292)
.+|.|++|+++..+..|+.++.++|+|+||+|||| |||.|+++ +||||.||+||++++|++|+|||
T Consensus 122 ~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~y 190 (351)
T 1yi8_B 122 SHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGAT---LVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp HHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTCS---EEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCCC---EEEecCCcHHHHHHHHHHHHHHHhhc
Confidence 99999999999887666667889999999999999 99999985 89999999999999999999987
Q ss_pred ---CCCccch--hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhh
Q 022791 150 ---YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 224 (292)
Q Consensus 150 ---~~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l 224 (292)
+++|..+ .+++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+.. +++..++||+.++++.|+
T Consensus 191 g~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l 264 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFL 264 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHH
T ss_pred ccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHH
Confidence 3677654 3799999998 4699999998 99999999999999999 9999863 235668899999999999
Q ss_pred hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
.+|+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++.++ +|+++|..+
T Consensus 265 ~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G 327 (351)
T 1yi8_B 265 DAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG 327 (351)
T ss_dssp HHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9997667778999999999889999999999999999999999999999986 899999865
No 19
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-61 Score=451.73 Aligned_cols=261 Identities=20% Similarity=0.222 Sum_probs=223.0
Q ss_pred hhh--HHhhcC-cceEEEeeccccccccc-cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch----hhhH---h
Q 022791 3 TKY--LQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N 71 (292)
Q Consensus 3 ~~~--lQ~~~g-~~~~I~iaD~hA~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~ 71 (292)
.+| ||++ | +.++|+||||||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++| |.+. +
T Consensus 24 ~~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~ 102 (337)
T 2el7_A 24 KQWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTP 102 (337)
T ss_dssp HHHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTHHHHHHHHHHHTSB
T ss_pred HHHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchhhHHHHHHHHccCC
Confidence 356 7996 7 88999999999999853 79999999999999999999999999999999999976 3333 3
Q ss_pred HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccC--
Q 022791 72 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-- 149 (292)
Q Consensus 72 ~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n-- 149 (292)
+.+|.|++|+++..+. .++.++|+|+||+|||| ||+.|+++ +||||.||+||++++||+|+|||
T Consensus 103 ~~~l~r~~~~k~r~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~~---lvp~G~DQ~~~i~l~rdla~r~n~~ 168 (337)
T 2el7_A 103 LGDLTRMTQFKDKASK---QETVWSGLLMYPVLQAA--------DILIYKAD---TVPVGEDQVQHIELTREIARRFNHL 168 (337)
T ss_dssp HHHHHTSHHHHHHTTS---SSCCBHHHHHHHHHHHH--------HHHHTTCC---EEECCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcc---CCCCChHHHHhHHHHHh--------hHHhhCCc---EEEcccchHHHHHHHHHHHHHHHhh
Confidence 7899999999886532 46789999999999999 99999985 89999999999999999999986
Q ss_pred ----CCCccchhc---cccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccch
Q 022791 150 ----YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 222 (292)
Q Consensus 150 ----~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~ 222 (292)
+++|..+++ ++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+ ..+++|++++++.
T Consensus 169 ~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~---~~~~~p~~~~v~~ 242 (337)
T 2el7_A 169 FGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL---SDPGDPERTILFT 242 (337)
T ss_dssp HSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHH
T ss_pred cCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc---cCCCCCchhhHHH
Confidence 477877664 89999999 6899999998 99999999999999999 9999976543 3567899999999
Q ss_pred hhhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhccc
Q 022791 223 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 285 (292)
Q Consensus 223 ~l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~~~ 285 (292)
|+++|+. .+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++.++ +|+++|..+
T Consensus 243 ~~~~~t~-~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G 306 (337)
T 2el7_A 243 YLSYFAP-KDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG 306 (337)
T ss_dssp HHHHHSC-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHcCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999943 3599999999999889999999999999999999999999999986 899999765
No 20
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.8e-60 Score=449.61 Aligned_cols=259 Identities=16% Similarity=0.247 Sum_probs=222.1
Q ss_pred hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCccc-ch--hhhHhHHHhhh
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAK 77 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r 77 (292)
++|||++ ||.++|+||||||+++++ .++++++++++++++.|+|||+||+|++||.||+|+ +| .+|..+.++++
T Consensus 81 ~~~lQ~~-G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~ 159 (373)
T 3vgj_A 81 VNKLTSN-GCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159 (373)
T ss_dssp HHHHHTT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHT
T ss_pred HHHHHHC-CCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHc
Confidence 4679995 999999999999999864 799999999999999999999999999999999998 55 47777777888
Q ss_pred heeecceeecc---ccC--CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-
Q 022791 78 CVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH- 151 (292)
Q Consensus 78 ~~t~~~~~~~~---g~~--~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~- 151 (292)
++|++++.++. ++. ++.++|+|+||+|||| ||+.|++| +||||.||+||+++|||+|+|||+.
T Consensus 160 ~~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~ 228 (373)
T 3vgj_A 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKK 228 (373)
T ss_dssp TSBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSC
T ss_pred cCcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCC
Confidence 88877776642 222 4689999999999999 99999997 7999999999999999999999986
Q ss_pred CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCcccc----ccchhhhhh
Q 022791 152 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF 227 (292)
Q Consensus 152 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~ 227 (292)
+|.++++++||||+++++|||||+|+|+|+|+|+|++|++|||+ ||||++. .++||.++ ++|+++..|
T Consensus 229 ~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f 300 (373)
T 3vgj_A 229 KPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEF 300 (373)
T ss_dssp CCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSE
T ss_pred CceEEeCCeeecCCCCCCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhh
Confidence 78888999999994445799999998899999999999999999 9999864 26788765 355666555
Q ss_pred cc----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhh
Q 022791 228 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAF 281 (292)
Q Consensus 228 ~~----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~ 281 (292)
.. +++++++++++|.+|+++|++||++||++|+++|+|||++|++..+. +++++
T Consensus 301 ~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 301 NLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp EECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 21 24689999999999999999999999999999999999999987643 45554
No 21
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.1e-58 Score=437.92 Aligned_cols=248 Identities=23% Similarity=0.316 Sum_probs=214.9
Q ss_pred chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKC 78 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~ 78 (292)
.++|||++ |+.++|+||||||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++| .||..+.++++.
T Consensus 58 ~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~ 136 (364)
T 2cya_A 58 KVKDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKR 136 (364)
T ss_dssp HHHHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCc
Confidence 35679995 999999999999999864 89999999999999999999999999999999999876 567766677777
Q ss_pred eeecceeecc---cc---CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCC
Q 022791 79 VTYNKVVGIF---GF---TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 152 (292)
Q Consensus 79 ~t~~~~~~~~---g~---~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~ 152 (292)
+|++++.+.. ++ ..+.++|+|+||+|||| ||+.|++| +||||.||+||+++||++|+|||+++
T Consensus 137 ~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~ 205 (364)
T 2cya_A 137 ASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKK 205 (364)
T ss_dssp SCHHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCC
T ss_pred CcHHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCC
Confidence 7776665542 22 12467999999999999 99999996 89999999999999999999999999
Q ss_pred ccchhccccccccC---------------CcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc
Q 022791 153 PALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 217 (292)
Q Consensus 153 p~~l~~~~lpgL~g---------------~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~ 217 (292)
|.++++++||||+| |++|||||+++++|+|+|+|++|++||++ |+||++. ++.
T Consensus 206 p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~-----------~~~ 273 (364)
T 2cya_A 206 PVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQ-----------VQG 273 (364)
T ss_dssp CEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTT
T ss_pred ceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCC-----------CCC
Confidence 99999999999997 56899999988899999999999999999 9999754 334
Q ss_pred cccchhhhhhcc-------------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022791 218 DIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 273 (292)
Q Consensus 218 ~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~ 273 (292)
+.++.|+++|+. +.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|++|++.
T Consensus 274 ~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 274 NPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp CHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556777777541 23589999999999989999999999999999999999999953
No 22
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-58 Score=438.81 Aligned_cols=256 Identities=21% Similarity=0.316 Sum_probs=220.3
Q ss_pred chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHH-Hhch----hhhhhccCCCCceeEecCCcccch-hhhHhHH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMV 73 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~-~~~~----~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~ 73 (292)
.++|||++ |+.++|+||||||+++++ .+++++++++ ++++ ++|+|||+||+|++||.||+|++| .+|..+.
T Consensus 57 ~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~ 135 (375)
T 2cyc_A 57 KIADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVI 135 (375)
T ss_dssp HHHHHHHT-TCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHH
T ss_pred HHHHHHHC-CCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHH
Confidence 35679996 999999999999999864 6999999999 8888 899999999999999999999987 4777777
Q ss_pred Hhhhheeecceeecc---cc--CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCccc
Q 022791 74 KVAKCVTYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 148 (292)
Q Consensus 74 ~l~r~~t~~~~~~~~---g~--~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~ 148 (292)
.+++.++++++.++. ++ .++.++|+|+||+|||| |||.|++| +||||.||+||+++|||+|+||
T Consensus 136 ~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~ 204 (375)
T 2cyc_A 136 DISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKL 204 (375)
T ss_dssp HHHTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGC
T ss_pred HHhceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHh
Confidence 777777777776543 22 23578999999999999 99999996 7999999999999999999999
Q ss_pred CC--------C-CccchhccccccccCC----------------cccccccCCCceeEecCCHHHHHHHhhhccccCCcc
Q 022791 149 GY--------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 203 (292)
Q Consensus 149 n~--------~-~p~~l~~~~lpgL~g~----------------~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~ 203 (292)
|+ . +|.++++++||||+|| ++|||||+|+++|+|+|+|++|++||++ |+|||.
T Consensus 205 n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~- 282 (375)
T 2cyc_A 205 RYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR- 282 (375)
T ss_dssp SSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-
T ss_pred CCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-
Confidence 98 4 7888889999999997 5899999988899999999999999999 999974
Q ss_pred cHHHHHHhCCCccccccchhhhhhcc-------------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH
Q 022791 204 SVELHRKLGANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 264 (292)
Q Consensus 204 ~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~ 264 (292)
+++.++++.|+++|+. +++++++|+++|.+|+++|+++|+.||+.|+++|+
T Consensus 283 ----------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~ 352 (375)
T 2cyc_A 283 ----------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352 (375)
T ss_dssp ----------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTH
T ss_pred ----------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445666677776641 14679999999999989999999999999999999
Q ss_pred HHHHHHhhhhH--HHHHhh
Q 022791 265 RHQVARAAVTD--EMVDAF 281 (292)
Q Consensus 265 pir~~~~~~~~--~~l~~~ 281 (292)
|+|++|++..+ +.++++
T Consensus 353 pir~~~~~~~~~~~~~~~~ 371 (375)
T 2cyc_A 353 PIRRYFEKHPEPLELMRSV 371 (375)
T ss_dssp HHHHHHHHCCHHHHHHHHC
T ss_pred HHHHHHHhChhHHHHHHhc
Confidence 99999996532 145444
No 23
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=7.2e-58 Score=430.13 Aligned_cols=248 Identities=19% Similarity=0.305 Sum_probs=202.2
Q ss_pred chhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch-hhhHhHHHhhh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG-AFYKNMVKVAK 77 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~-~~~~~~~~l~r 77 (292)
.++|||++ |+.++++||||||+++++ .+++++++++++++++|+|||+||+|++||.||+| ++| .+|..+..+++
T Consensus 64 ~~~~lQ~~-G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~ 142 (348)
T 2j5b_A 64 NTNNMIEC-GGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAE 142 (348)
T ss_dssp HHHHHHHT-TEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHh
Confidence 45679995 999999999999999865 58999999999999999999999999999999998 444 66766666666
Q ss_pred heeecceeec---ccc--CCCCccccccCCccccCCCCCCCCCccccC---CCcccccccccccCCCccccccccCcccC
Q 022791 78 CVTYNKVVGI---FGF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIG 149 (292)
Q Consensus 78 ~~t~~~~~~~---~g~--~~~~~~g~l~YP~lqaad~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~h~elaR~ia~r~n 149 (292)
+++++++.+. .++ .++.++|+|+||+|||| ||+.+ ++| +||||.||+||+++||++|+|||
T Consensus 143 ~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia~r~~ 211 (348)
T 2j5b_A 143 FSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYANDRG 211 (348)
T ss_dssp HHHHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHHHHTT
T ss_pred heeHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHHHHhC
Confidence 6666655542 222 23568999999999999 99999 885 79999999999999999999999
Q ss_pred CCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc-
Q 022791 150 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL- 228 (292)
Q Consensus 150 ~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~- 228 (292)
+..|.++++++||||+|+++|||||+|+++|+|+|+|++|++|||+ |+|||.. ++ ++++.|+.++.
T Consensus 212 ~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~-----------~~-~~~~~~~~~~~~ 278 (348)
T 2j5b_A 212 LKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDET-----------FD-NPIFEYIKYLLL 278 (348)
T ss_dssp CCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSS-----------TT-CHHHHHHHHTHH
T ss_pred CCCceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCC-----------CC-CchHhHHHHhhh
Confidence 9989988899999997766899999988899999999999999999 9999853 23 33344443321
Q ss_pred ----------cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 022791 229 ----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 276 (292)
Q Consensus 229 ----------~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~ 276 (292)
.+++++++|+++|. | ++|+++|+.||+.|+++|+|||+++++....
T Consensus 279 ~~~~~~~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~~~ 334 (348)
T 2j5b_A 279 RWFGTLNLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPELS 334 (348)
T ss_dssp HHHSCEEETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGH
T ss_pred hhhcccccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 13567999999999 5 8999999999999999999999999876433
No 24
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.1e-57 Score=457.91 Aligned_cols=268 Identities=19% Similarity=0.271 Sum_probs=228.4
Q ss_pred hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcc-cch--hhhHhHHHhhh
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAK 77 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r 77 (292)
++|||++ |+.++|+||||||+++++ .++++++++++++++.|+|||+||+|++||.||+| ++| .+|..+.++++
T Consensus 65 ~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~ 143 (690)
T 3p0j_A 65 VNKCTAA-GCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGR 143 (690)
T ss_dssp HHHHHHT-TEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHh
Confidence 4579995 999999999999999864 78999999999999999999999999999999985 555 57777888888
Q ss_pred heeecceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC-C
Q 022791 78 CVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K 152 (292)
Q Consensus 78 ~~t~~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~-~ 152 (292)
.+|++++.++. |+. .+.++|+|+||+|||| ||+.|++| +||||.||+||+++|||+|+|||+. +
T Consensus 144 ~~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~ 212 (690)
T 3p0j_A 144 QNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLK 212 (690)
T ss_dssp TSCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCC
T ss_pred hCCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCC
Confidence 88888777642 322 2379999999999999 99999996 7999999999999999999999985 6
Q ss_pred ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcc-cHHHHHHhCCC---ccccccchhhhhhc
Q 022791 153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFL 228 (292)
Q Consensus 153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~-~~~~~~~~~~~---p~~~~~~~~l~~~~ 228 (292)
|.++++++||||+++++|||||+++|+|+|+|+|++|++|||+ |+||++. +..+++++|++ ++.++++.|+.++.
T Consensus 213 p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~ 291 (690)
T 3p0j_A 213 PVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVV 291 (690)
T ss_dssp CEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTT
T ss_pred ceEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhh
Confidence 8888899999995445799999998899999999999999999 9999864 11223345544 67889999999763
Q ss_pred c------------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHhhhc
Q 022791 229 E------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA 283 (292)
Q Consensus 229 ~------------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~~l~ 283 (292)
. +++++++++++|++|+++|++||+.||+.|+++|+|||+||++..++ +++++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 292 YARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp TTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 1 35689999999999999999999999999999999999999988765 6776654
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.5e-55 Score=408.57 Aligned_cols=243 Identities=23% Similarity=0.333 Sum_probs=213.8
Q ss_pred hhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhheee
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTY 81 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~ 81 (292)
.+|||++ |+.++|+||||||++.+..+++++++++++++++|+|||+||+|+.||.||+|+.+ .++..+..+++.+|+
T Consensus 56 ~~~lq~~-g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~ 134 (323)
T 2cyb_A 56 LMDLQEA-GFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTL 134 (323)
T ss_dssp HHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBH
T ss_pred HHHHHHC-CCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCH
Confidence 4669995 99999999999999986459999999999999999999999999999999999754 667777778888888
Q ss_pred cceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791 82 NKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE 157 (292)
Q Consensus 82 ~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~ 157 (292)
+++.+.. ++. ++.++|+|+||+|||| |++.++++ +||||.||++|++++|++|+|||+++|..++
T Consensus 135 ~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~ 203 (323)
T 2cyb_A 135 NRARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLH 203 (323)
T ss_dssp HHHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEE
T ss_pred HHHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEe
Confidence 7776643 332 3458999999999999 99999985 8999999999999999999999999999999
Q ss_pred ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---------
Q 022791 158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--------- 228 (292)
Q Consensus 158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--------- 228 (292)
+++||||+| +||||| ++++|+|+|+|++|++||++ |+||++. ++.++++.|+++|.
T Consensus 204 ~pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~p~~~~~~i 268 (323)
T 2cyb_A 204 TPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHILPRFGKIVV 268 (323)
T ss_dssp ECCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHHHHHSCEEE
T ss_pred cCcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhccccCceeE
Confidence 999999998 799999 56799999999999999999 9998753 44577788888764
Q ss_pred -------c--ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791 229 -------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 272 (292)
Q Consensus 229 -------~--~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~ 272 (292)
. +++++++++++|.+|+++|++||+.||+.|+++|+|||+||++
T Consensus 269 ~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 269 ERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp CCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred echhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 3458999999999999999999999999999999999999976
No 26
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.5e-53 Score=394.40 Aligned_cols=238 Identities=19% Similarity=0.229 Sum_probs=207.0
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch-hhhHhHHHhhhhee
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT 80 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t 80 (292)
.++|||++ |+.++|+|||+||++++..+++++++++++++++|+|||+| +.++.||+|+++ .+|..+..+++.+|
T Consensus 51 ~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t 126 (314)
T 2zp1_A 51 KMIDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTT 126 (314)
T ss_dssp HHHHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCc
Confidence 45779995 99999999999999986469999999999999999999999 778889999875 56777777777777
Q ss_pred ecceeecc---ccC-CCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccch
Q 022791 81 YNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 156 (292)
Q Consensus 81 ~~~~~~~~---g~~-~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l 156 (292)
++++.+.. ++. ++.++|+|+||+|||| ||+.++++ +||||.||++|++++|++++ ++|.++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~ 191 (314)
T 2zp1_A 127 LKRARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCI 191 (314)
T ss_dssp HHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEE
T ss_pred HHHHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEe
Confidence 77766542 221 2348999999999999 99999985 89999999999999999997 788888
Q ss_pred hccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc--------
Q 022791 157 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-------- 228 (292)
Q Consensus 157 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-------- 228 (292)
++++||||+| ++||||| ++|+|+|+|+|++|++|||+ |+|||+. ++.+++|+|+.+|.
T Consensus 192 ~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~~~~~~i~r 257 (314)
T 2zp1_A 192 HNPVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFLEYPLTIKR 257 (314)
T ss_dssp EECCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHCCSSEEECC
T ss_pred eccccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHhcCCcceee
Confidence 9999999996 4799999 67799999999999999999 9999754 34577888888875
Q ss_pred -------cChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791 229 -------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 272 (292)
Q Consensus 229 -------~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~ 272 (292)
.++.++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++.
T Consensus 258 ~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 258 PEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp CGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 14568999999999999999999999999999999999999975
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=3.6e-53 Score=401.56 Aligned_cols=248 Identities=20% Similarity=0.226 Sum_probs=200.2
Q ss_pred chhhHHhhcCcceEEEeeccccccccccCHHHHHHHH---Hhc-hh-hhhhccCCCCceeEecCCccc-chhhhHhHHHh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKV 75 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~---~~~-~~-~~lA~Gldp~k~~i~~qs~~~-~~~~~~~~~~l 75 (292)
+.+|+|++ |+.++++||||||+|+++.+++++.++. .+. +. .++|||+||+++.||.||+|+ ...++..++++
T Consensus 58 ~~~~~~q~-g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l 136 (372)
T 1n3l_A 58 KIADFLKA-GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRL 136 (372)
T ss_dssp HHHHHHHT-TCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHH
T ss_pred HHHHHHHC-CCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHH
Confidence 35667874 9999999999999997656666664444 332 44 468999999999999999995 34666677778
Q ss_pred hhheeecceeec----cccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCC
Q 022791 76 AKCVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 151 (292)
Q Consensus 76 ~r~~t~~~~~~~----~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~ 151 (292)
++.+|+.+.++. .++.++.++|+|+||+|||| ||+.|+++ +||||.||++|++++|++++|||++
T Consensus 137 ~~~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~ 205 (372)
T 1n3l_A 137 SSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYS 205 (372)
T ss_dssp HTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred HhhCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCC
Confidence 888888877764 24446789999999999999 99999995 8999999999999999999999999
Q ss_pred CccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccc----cccchhhhhh
Q 022791 152 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLSFF 227 (292)
Q Consensus 152 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~----~~~~~~l~~~ 227 (292)
+|..+++++||||+| +|||||++|++|+|+|+|++|++|||+ |+|||+.+ +++|.. .++|++++.|
T Consensus 206 ~p~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~~f 275 (372)
T 1n3l_A 206 KRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEF 275 (372)
T ss_dssp CCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCE
T ss_pred CCEEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhcce
Confidence 999999999999998 799999999899999999999999999 99998642 223221 2444555546
Q ss_pred cc----------ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 022791 228 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 271 (292)
Q Consensus 228 ~~----------~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~ 271 (292)
+. +++++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++
T Consensus 276 ~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 276 VILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp EECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 42 456899999999999899999999999999999999999998
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-52 Score=396.35 Aligned_cols=259 Identities=19% Similarity=0.169 Sum_probs=201.0
Q ss_pred hhhHHhhcCcceEEEeeccccccccc-cCHHHHHHHH----HhchhhhhhccCCCCceeEecCCcccc-hhhhHhHHHhh
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLA----RENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 76 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~-~~~~~i~~~~----~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~ 76 (292)
..|+|+ .|+.++|+|+||||+|+++ .+.+.++.++ ..+.+.|+|||+||+++.||.||+|.. ..|+..++.++
T Consensus 63 ~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~ 141 (394)
T 2dlc_X 63 LADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLS 141 (394)
T ss_dssp HHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHH
T ss_pred HHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHh
Confidence 445776 4999999999999999754 6667777664 344457889999999999999999964 35666677788
Q ss_pred hheeecceeecc----ccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCC
Q 022791 77 KCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 152 (292)
Q Consensus 77 r~~t~~~~~~~~----g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~ 152 (292)
..+|++++.+.. ++.++.++|+|+||+|||| ||+.++++ +||||.||++|++++|+++++||+++
T Consensus 142 ~~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~ 210 (394)
T 2dlc_X 142 NIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKK 210 (394)
T ss_dssp TTSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred CcCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCC
Confidence 888887766431 2245678999999999999 99999986 79999999999999999999999999
Q ss_pred ccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccH---------------HHHHHhCCCccc
Q 022791 153 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV---------------ELHRKLGANLEV 217 (292)
Q Consensus 153 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~---------------~~~~~~~~~p~~ 217 (292)
|..+++++||||+| ++|||||++|++|+|+|+|++|++|||+ |+|||+.+. +++++.+|++.
T Consensus 211 p~~l~~pll~gl~~-G~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~- 287 (394)
T 2dlc_X 211 RAHLMNPMVPGLAQ-GGKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFE- 287 (394)
T ss_dssp CEEEEECCCCCCC-----------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCC-
T ss_pred CEEEecccccCCCC-CCcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCce-
Confidence 99999999999992 2899999998889999999999999999 999996531 11112222222
Q ss_pred cccchh------hhhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhc
Q 022791 218 DIPVKY------LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 283 (292)
Q Consensus 218 ~~~~~~------l~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~~l~ 283 (292)
|.+ +..+ +++++++|+++|.+|+++|+++|+.||+.|+++|+|+|+++++.. ..++++.
T Consensus 288 ---~~i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~ 352 (394)
T 2dlc_X 288 ---FFIDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE 352 (394)
T ss_dssp ---EEECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred ---EEEeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence 333 4444 457899999999998899999999999999999999999988543 3555554
No 29
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=6e-52 Score=386.28 Aligned_cols=236 Identities=15% Similarity=0.138 Sum_probs=201.7
Q ss_pred chhhHHhhcCcceEEEeecccccccccc---------CHHHHHHHH---HhchhhhhhccCCCCceeEecCCcccch---
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGG--- 66 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~~---------~~~~i~~~~---~~~~~~~lA~Gldp~k~~i~~qs~~~~~--- 66 (292)
.++|||++ |+.++++|||+||+++++. +++++++|+ +++++.|+|||+||+|++||.||+|+.+
T Consensus 57 ~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~ 135 (322)
T 2yxn_A 57 CLKRFQQA-GHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNV 135 (322)
T ss_dssp HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCH
T ss_pred HHHHHHHc-CCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcH
Confidence 46779995 9999999999999998652 899999999 8999999999999999999999999765
Q ss_pred -hhhHhHH---Hhhhheeecceeecccc-CCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCc
Q 022791 67 -AFYKNMV---KVAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPY 137 (292)
Q Consensus 67 -~~~~~~~---~l~r~~t~~~~~~~~g~-~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h 137 (292)
+|+..++ .++|+.+...++.++++ .++.++|+|+||+|||| ||+.+ +++ +++||.||+||
T Consensus 136 l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~ 204 (322)
T 2yxn_A 136 LTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGN 204 (322)
T ss_dssp HHHHHHTGGGCCHHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHH
T ss_pred HHHHHHHhccccHHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHH
Confidence 3443333 55666555555555543 34679999999999999 99999 875 67789999999
Q ss_pred cccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCC
Q 022791 138 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGAN 214 (292)
Q Consensus 138 ~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~ 214 (292)
+++|||+|+|||..+|..+.+|+|||++| +|||||++| +|+|+| +|+++++||++ +-
T Consensus 205 i~l~rdla~r~n~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~~---------------- 264 (322)
T 2yxn_A 205 ITSGIDLTRRLHQNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-TA---------------- 264 (322)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-CC----------------
T ss_pred HHHHHHHHHHhCCCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-CC----------------
Confidence 99999999999998888889999999998 699999997 999999 99999999999 51
Q ss_pred ccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 022791 215 LEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 272 (292)
Q Consensus 215 p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~ 272 (292)
.+.+++|+.+|+. +++++++++++|.+|. +++++|+.||+.|+++++|.++.++.
T Consensus 265 --d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a 320 (322)
T 2yxn_A 265 --DADVYRFLKFFTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA 320 (322)
T ss_dssp --HHHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 1345677777754 7889999999999886 99999999999999999999998775
No 30
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.4e-50 Score=389.42 Aligned_cols=244 Identities=17% Similarity=0.142 Sum_probs=199.3
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCC--CCceeEecCCcccchhhhH
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYK 70 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~ 70 (292)
.++|||++ |+.++++|||+||+++++ .+++++++|+..+.+.+. +|+| |+|++||.||+|.++.++.
T Consensus 61 ~l~~lQ~~-G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~ 138 (432)
T 1h3f_A 61 KMRQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFK 138 (432)
T ss_dssp HHHHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHH
T ss_pred HHHHHHHC-CCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHH
Confidence 46779995 999999999999999854 458899999987777665 7999 9999999999998887777
Q ss_pred hHHHhhhheeecceeecccc------CCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCcccccccc
Q 022791 71 NMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 144 (292)
Q Consensus 71 ~~~~l~r~~t~~~~~~~~g~------~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~i 144 (292)
.++++++++|++++.++.++ .++.++|+|+||+|||| ||+.++++ +||||.||++|++++||+
T Consensus 139 ~~l~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdl 207 (432)
T 1h3f_A 139 EVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREV 207 (432)
T ss_dssp HHHHHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHH
Confidence 77888888888887655432 25689999999999999 99999985 899999999999999999
Q ss_pred CcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhh
Q 022791 145 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 224 (292)
Q Consensus 145 a~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l 224 (292)
++|||..+|..+++|+||||+| ++|||||.+| +|+|+|+|++|++||++ +.+ ++++.|+
T Consensus 208 arr~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l 266 (432)
T 1h3f_A 208 QRAYGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYF 266 (432)
T ss_dssp HHHTTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHH
T ss_pred HHHhCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHH
Confidence 9999988888888999999998 4699999987 99999999999999999 733 3567889
Q ss_pred hhhccChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH----HHHHHHhhhhHH-HHHhhhcc
Q 022791 225 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV 284 (292)
Q Consensus 225 ~~~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~----pir~~~~~~~~~-~l~~~l~~ 284 (292)
++|+. .+.+|+++.+.. +|+++|+.||+.|+++++ |||+||+++.+. +|++++..
T Consensus 267 ~~ft~--~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~ 326 (432)
T 1h3f_A 267 RLLTD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR 326 (432)
T ss_dssp HHHCC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred HHcCC--CCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence 98853 345555555543 899999999999999999 999999999875 78888776
No 31
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.1e-49 Score=399.70 Aligned_cols=245 Identities=13% Similarity=0.161 Sum_probs=210.0
Q ss_pred hhhHHhhcCcceEEEeeccccccccc--cCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccch---hhhHhHHHhhh
Q 022791 3 TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAK 77 (292)
Q Consensus 3 ~~~lQ~~~g~~~~I~iaD~hA~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~---~~~~~~~~l~r 77 (292)
.+|+|..+|+.++|+||||||+++++ .+++++++++.+++++|+|||+|| ++.|+.||+|... .||..+++|++
T Consensus 407 ~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~ 485 (690)
T 3p0j_A 407 KDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIAR 485 (690)
T ss_dssp HHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHH
Confidence 46778778999999999999999877 799999999999999999999998 6777778888754 69999999999
Q ss_pred heeecceeeccccCCCCccccccCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchh
Q 022791 78 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE 157 (292)
Q Consensus 78 ~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~ 157 (292)
.+|+++++++++ .++.++|+++||+|||| |++.+++| ++|||+||++|++||||+|+|++ +|+.++
T Consensus 486 ~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~~~~~~ 551 (690)
T 3p0j_A 486 KNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--DCVQTL 551 (690)
T ss_dssp TSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--EEEECC
T ss_pred hhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--Cccccc
Confidence 999999999886 57789999999999999 99999998 69999999999999999999975 577788
Q ss_pred ccccccccCCcccccccCCCceeEecCCHHHHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhc---------
Q 022791 158 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--------- 228 (292)
Q Consensus 158 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--------- 228 (292)
++++|+|+||+.+||||+++|+|+|+|+|++|++||++ |||+++ . ++||.++ |+.++.
T Consensus 552 ~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~-v-------e~np~l~----~~~~~~~~~~~~~i~ 618 (690)
T 3p0j_A 552 EGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN-E-------EANPVIS----VAQHLLAQHGALSIE 618 (690)
T ss_dssp CCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT-C-------SCSHHHH----HHHHHHHHHSCEEEC
T ss_pred ccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC-C-------CCChHHH----HHHHHhccCCceEEe
Confidence 89999999997777788888999999999999999999 999984 2 5677554 444321
Q ss_pred ------c--ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022791 229 ------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 275 (292)
Q Consensus 229 ------~--~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~ 275 (292)
. +++++++|+++|.+|++||+|+|++|++.|+++|+|+|++++-...
T Consensus 619 r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~~~ 673 (690)
T 3p0j_A 619 RGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELK 673 (690)
T ss_dssp CCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred chhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 2578999999999999999999999999999999999999984443
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-48 Score=374.89 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=198.7
Q ss_pred chhhHHhhcCcceEEEeeccccccccc--------cCHHHHHHHHHhc---hhhhhhccCCCCceeEecCCcccchh---
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN--------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGA--- 67 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~--------~~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~~--- 67 (292)
.++|||++ |+.++++|||+||+++++ .+++++++|++.+ ++.|+|||+||+|++||.||+|+++.
T Consensus 56 ~l~~lQ~~-G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l 134 (432)
T 2jan_A 56 TLRRFQRA-GHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAI 134 (432)
T ss_dssp HHHHHHHT-TCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHH
T ss_pred HHHHHHHC-CCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHH
Confidence 46789995 999999999999999865 7899999999654 77899999999999999999998752
Q ss_pred -hhH------hHHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCC
Q 022791 68 -FYK------NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDP 136 (292)
Q Consensus 68 -~~~------~~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~ 136 (292)
|+. ++.++.++.++++.. ..++.++|+|+||+|||| ||+.+ +++ +||||.||+|
T Consensus 135 ~~lr~l~~~~tv~~m~~~~~~k~r~----~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ 199 (432)
T 2jan_A 135 EFLRDIGKHFSVNVMLARDTIRRRL----AGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWG 199 (432)
T ss_dssp HHHHHTGGGCBHHHHHHSHHHHHHT----STTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHH
T ss_pred HHHHHHhccCcHHHHhcchHHhhhh----cCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHH
Confidence 221 255566666655433 135679999999999999 99999 986 7999999999
Q ss_pred ccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCC
Q 022791 137 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGA 213 (292)
Q Consensus 137 h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~ 213 (292)
|++++||+|+|||..+|..++.|+|||++| +|||||.+|++|+|+| +|+++++||++ + +
T Consensus 200 ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~-------------- 261 (432)
T 2jan_A 200 NIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A-------------- 261 (432)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------
T ss_pred HHHHHHHHHHHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------
Confidence 999999999999998888899999999998 6999999988999999 99999999999 4 1
Q ss_pred Cccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 214 NLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 214 ~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
+++ +++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++..+..+...
T Consensus 262 D~~---v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 319 (432)
T 2jan_A 262 DAD---VIRYLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVEH 319 (432)
T ss_dssp HHH---HHHHHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh---HHHHHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 122 3466666543 6789999999999886 9999999999999999999888766544
No 33
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=2.3e-48 Score=366.15 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=184.6
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhccCCCCc-----------eeEecCC
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDF 61 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k-----------~~i~~qs 61 (292)
.++|||++ |+.++++|||+||+|+++ .+++++++|+++++++|+|+ +||++ +.||.||
T Consensus 70 ~~~~lQ~~-G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns 147 (356)
T 2pid_A 70 GLFHLQRA-GHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNS 147 (356)
T ss_dssp HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETH
T ss_pred HHHHHHHC-CCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEech
Confidence 35679995 999999999999999754 27999999999999999999 99866 8888999
Q ss_pred cccch----hhhHh---HHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccc
Q 022791 62 DYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPC 130 (292)
Q Consensus 62 ~~~~~----~~~~~---~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpv 130 (292)
+|..+ +++.+ .+.+++|.+...++.+....++.++|+|+||+|||| ||+.| +++ +|||
T Consensus 148 ~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~ 216 (356)
T 2pid_A 148 AWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLG 216 (356)
T ss_dssp HHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEE
T ss_pred HhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEec
Confidence 88754 23332 344555555555544433234689999999999999 99999 986 7999
Q ss_pred cccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHH
Q 022791 131 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVEL 207 (292)
Q Consensus 131 G~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~ 207 (292)
|.||+||+++|||+|+|||..+|..++.|+||||+| +|||||.+ ++|+|+| +|++|++||++ +.
T Consensus 217 G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG--~KMSKS~~-naI~L~d~~tsp~~i~~ki~~-~~--------- 283 (356)
T 2pid_A 217 GSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTG--AKLGKSAG-NAVWLNRDKTSPFELYQFFVR-QP--------- 283 (356)
T ss_dssp EGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-CC---------
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--ccccCCCC-CeeeccCCCCCHHHHHHHHHc-CC---------
Confidence 999999999999999999998888999999999998 69999975 5999999 99999999999 51
Q ss_pred HHHhCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 208 HRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 208 ~~~~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
++++ ++|+.+|+. +.+++++|+++|.+| .+++++|+.||+.|+++++..++..+...
T Consensus 284 ------D~~v---~~~l~~~t~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~ 341 (356)
T 2pid_A 284 ------DDSV---ERYLKLFTFLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR 341 (356)
T ss_dssp ------HHHH---HHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhH---HHHHHHHHcCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 1223 456665542 678999999999987 59999999999999999999998876654
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=4.4e-47 Score=363.57 Aligned_cols=236 Identities=14% Similarity=0.159 Sum_probs=197.9
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhc---hhhhhhccCCCCceeEecCCcccch---
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGG--- 66 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~--- 66 (292)
.++|||++ |+.++++|||+||+++++ . +++++++|++.+ ++.+++||+||+|++||.||+|+++
T Consensus 54 ~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~ 132 (419)
T 2ts1_A 54 TMRRFQQA-GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDV 132 (419)
T ss_dssp HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCH
T ss_pred HHHHHHHC-CCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchH
Confidence 46789995 999999999999999865 2 999999999655 7789999999999999999999864
Q ss_pred -hhhH---hHHHhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcc
Q 022791 67 -AFYK---NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYF 138 (292)
Q Consensus 67 -~~~~---~~~~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~ 138 (292)
+|+. ..+.++||.++..+++++ .++.++|+|+||+|||| ||+.+ +++ +||||.||++|+
T Consensus 133 ~~~l~~~~~~~tv~rm~~~~~~k~r~--~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni 199 (419)
T 2ts1_A 133 ITFLRDVGKHFSVNYMMAKESVQSRI--ETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNI 199 (419)
T ss_dssp HHHHHHTGGGCCHHHHHTSHHHHTTT--TTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHH
T ss_pred HHHHHHHhcccCHHHHhccchhhhcc--CCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHH
Confidence 3333 246666666666665554 35789999999999999 99999 885 799999999999
Q ss_pred ccccccCccc-CCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCC
Q 022791 139 RMTRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGAN 214 (292)
Q Consensus 139 elaR~ia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~ 214 (292)
+++||+|+|| |..+|..+++|+|||++| +|||||.+| +|+|+| +|+++++||++ + + +
T Consensus 200 ~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~------~---------D 260 (419)
T 2ts1_A 200 TAGLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T------D---------D 260 (419)
T ss_dssp HHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C------C---------H
T ss_pred HHHHHHHHHhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C------C---------c
Confidence 9999999999 988888899999999998 699999875 999999 99999999999 4 1 1
Q ss_pred ccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 215 LEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 215 p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
+.+++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++..+..+...
T Consensus 261 ---~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 317 (419)
T 2ts1_A 261 ---RDVIRYLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAIR 317 (419)
T ss_dssp ---HHHHHHHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ---hhHHHHHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 223566666543 6789999999999886 9999999999999999999887766543
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=2.1e-46 Score=356.61 Aligned_cols=238 Identities=14% Similarity=0.079 Sum_probs=193.8
Q ss_pred chhhHHhhcCcceEEEeeccccccccc---------cCHHHHHHHHHhchhhhhhcc-----------CC---CCceeEe
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG-----------FD---VTKTFIF 58 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~---------~~~~~i~~~~~~~~~~~lA~G-----------ld---p~k~~i~ 58 (292)
.++|||++ |+.++++|||+||+++++ .+++++++|++.+.++++|+| +| |++++||
T Consensus 88 ~l~~lQ~~-G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~ 166 (392)
T 1y42_X 88 PLFWMYLE-GYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIV 166 (392)
T ss_dssp HHHHHHHH-TCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEE
T ss_pred HHHHHHHc-CCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEE
Confidence 45779996 999999999999999854 488899999999888888765 45 7899999
Q ss_pred cCCcccch----hhhHhHH---HhhhheeecceeeccccCCCCccccccCCccccCCCCCCCCCccccC----CCccccc
Q 022791 59 SDFDYVGG----AFYKNMV---KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCL 127 (292)
Q Consensus 59 ~qs~~~~~----~~~~~~~---~l~r~~t~~~~~~~~g~~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~ 127 (292)
.||+|..+ .++..++ +++||++.+.++.+++..++.++|+|+||+|||| ||+.+ +++ +
T Consensus 167 ~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~---i 235 (392)
T 1y42_X 167 NNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQ---M 235 (392)
T ss_dssp ETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---E
T ss_pred EccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCcc---E
Confidence 99998533 2343444 7777776666666655456789999999999999 99976 575 7
Q ss_pred ccccccCCCccccccccCcccCC-----------------CCccchhccccccccCCcccccccCCCceeEecC---CHH
Q 022791 128 IPCAIDQDPYFRMTRDVAPRIGY-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAK 187 (292)
Q Consensus 128 vpvG~DQ~~h~elaR~ia~r~n~-----------------~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~ 187 (292)
||||.||+||++++||+|+|||. ++|..+++|+||||+| +|||||.+| +|+|+| +|+
T Consensus 236 ~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~ 312 (392)
T 1y42_X 236 QIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVF 312 (392)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHH
T ss_pred EecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHH
Confidence 99999999999999999999864 4677788999999998 699999875 999999 999
Q ss_pred HHHHHhhhccccCCcccHHHHHHhCCCccccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHH
Q 022791 188 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 266 (292)
Q Consensus 188 ~I~kKI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pi 266 (292)
++++||++ + + ++++ +.|+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.
T Consensus 313 ~i~qki~~-~-~--------------D~~v---~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~ 372 (392)
T 1y42_X 313 DFYGYFVR-R-S--------------DQEV---ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGK 372 (392)
T ss_dssp HHHHHHHT-C-C--------------TTTH---HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHc-C-C--------------chhH---HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCH
Confidence 99999999 4 1 1233 456665543 6789999999999886 99999999999999999999
Q ss_pred HHHHhhhh
Q 022791 267 QVARAAVT 274 (292)
Q Consensus 267 r~~~~~~~ 274 (292)
++.++...
T Consensus 373 ~~~~~a~~ 380 (392)
T 1y42_X 373 QEASAAED 380 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877654
No 36
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1e-45 Score=354.90 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=196.4
Q ss_pred chhhHHhhcCcceEEEeeccccccccc-c--------CHHHHHHHHHhchhhhhhccCCC---CceeEecCCcccch-hh
Q 022791 2 FTKYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGG-AF 68 (292)
Q Consensus 2 ~~~~lQ~~~g~~~~I~iaD~hA~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gldp---~k~~i~~qs~~~~~-~~ 68 (292)
.++|||++ |+.++++|||+||+++++ . +++++++|++.+.++++|+ +|| +|++||.||+|+.+ .+
T Consensus 56 ~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~ 133 (420)
T 1jil_A 56 TLRRFQEH-GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISL 133 (420)
T ss_dssp HHHHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCH
T ss_pred HHHHHHHC-CCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccH
Confidence 46789995 999999999999999865 2 9999999999999999988 888 99999999999743 33
Q ss_pred hHhHHHhhhheeecceeecccc----CCCCccccccCCccccCCCCCCCCCccccC----CCcccccccccccCCCcccc
Q 022791 69 YKNMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM 140 (292)
Q Consensus 69 ~~~~~~l~r~~t~~~~~~~~g~----~~~~~~g~l~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~el 140 (292)
+.-+..+++++|++++.+..++ .++.++|+|+||+|||| ||+.+ +++ +||||.||++|+++
T Consensus 134 l~~l~~~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~ 202 (420)
T 1jil_A 134 ISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITS 202 (420)
T ss_dssp HHHHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHH
T ss_pred HHHHHHHhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHH
Confidence 3223334444444444443222 35789999999999999 99999 885 79999999999999
Q ss_pred ccccCccc-CCCCccchhccccccccCCcccccccCCCceeEecC---CHHHHHHHhhhccccCCcccHHHHHHhCCCcc
Q 022791 141 TRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE 216 (292)
Q Consensus 141 aR~ia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~I~kKI~k~A~t~~~~~~~~~~~~~~~p~ 216 (292)
+||+|+|| |..+|..+++|+|||++| +|||||.+| +|+|+| ||+++++||++ +- +
T Consensus 203 grdla~r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~~---------------D-- 261 (420)
T 1jil_A 203 GIELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-QS---------------D-- 261 (420)
T ss_dssp HHHHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-CC---------------H--
T ss_pred HHHHHHHhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-CC---------------c--
Confidence 99999999 988888899999999998 699999976 999999 99999999999 41 1
Q ss_pred ccccchhhhhhcc-ChHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022791 217 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 274 (292)
Q Consensus 217 ~~~~~~~l~~~~~-~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 274 (292)
+.+++|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus 262 -~~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~~ 318 (420)
T 1jil_A 262 -EDVIKFLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAIR 318 (420)
T ss_dssp -HHHHHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -hhHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 223566666643 6789999999999886 9999999999999999999887766544
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.33 E-value=6e-05 Score=73.37 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=52.5
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k 195 (292)
|+|..|.|+..+-..-..+.+.||.+.|...+.++|.+.+| +|||||+.+..|. +.+ .|+.|+.-+..
T Consensus 205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999998887777777899999898888899999998 7999998764321 111 46677666665
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.30 E-value=3.5e-05 Score=74.64 Aligned_cols=180 Identities=9% Similarity=0.048 Sum_probs=105.8
Q ss_pred hhhH-HhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCcee-------EecCCcccch--hhhHh-
Q 022791 3 TKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGG--AFYKN- 71 (292)
Q Consensus 3 ~~~l-Q~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~--~~~~~- 71 (292)
.+|+ ...+|..+++-|-|. +.. ....++...++.++..+|++++... .|.||+..+. .+...
T Consensus 24 ~n~l~Ar~~~G~filRieDt----D~~---R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L 96 (468)
T 1j09_A 24 FNYAWARRNGGRFIVRIEDT----DRA---RYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEEL 96 (468)
T ss_dssp HHHHHHHHTTCEEEECBCCC----CTT---SCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCcC----CCc---ccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHH
Confidence 4563 333577777877774 211 1234566677888889999999864 4889987641 11110
Q ss_pred ------------HHHh-------------hhheeecceeecc--cc--------CCC-------CccccccCCccccCCC
Q 022791 72 ------------MVKV-------------AKCVTYNKVVGIF--GF--------TGE-------DHIGKVSFPPVQAVPS 109 (292)
Q Consensus 72 ------------~~~l-------------~r~~t~~~~~~~~--g~--------~~~-------~~~g~l~YP~lqaad~ 109 (292)
--+| +|..+..+..+.. |. ... .-.|.+.+|..+.-
T Consensus 97 ~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~-- 174 (468)
T 1j09_A 97 LKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP-- 174 (468)
T ss_dssp HHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC--
T ss_pred HHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCC--
Confidence 1111 1122222111100 10 000 01244555555444
Q ss_pred CCCCCCccccCCCccc----------------ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccc
Q 022791 110 FPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 173 (292)
Q Consensus 110 ~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSk 173 (292)
|..++++|.. |+|.-|.|+..|...-.-+.+.+|.+.|...+.+++.+.+| .||||
T Consensus 175 ------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g--~klSK 246 (468)
T 1j09_A 175 ------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISK 246 (468)
T ss_dssp ------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCT
T ss_pred ------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCC--Ccccc
Confidence 6666666520 23444999999988888888999998898777889999988 79999
Q ss_pred cCCCceeE-ecC---CHHHHHHHhhhcccc
Q 022791 174 SDPNSAIY-VTD---SAKAIKNKINKYAFS 199 (292)
Q Consensus 174 S~~~s~I~-L~D---~~~~I~kKI~k~A~t 199 (292)
++.+..|. +.+ .|+.|..-+...-++
T Consensus 247 R~g~~~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 247 RKSHTSLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp TTSCCBHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred ccchhhHHHHHHCCCCHHHHHHHHHHhccC
Confidence 98764321 111 477777666653343
No 39
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.24 E-value=6e-05 Score=68.86 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=32.9
Q ss_pred cccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecCCHHH
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 188 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 188 (292)
+|.-|.|+..+...-..+.+.+|.+.|...+.++|.+.+| .||||+..+..|.-.+...-
T Consensus 187 hvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~ 246 (298)
T 1nzj_A 187 EIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPV 246 (298)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHH
T ss_pred EEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHH
Confidence 3444999876655555556888999998888999999998 79999987655554444433
No 40
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.19 E-value=0.00041 Score=68.92 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=52.9
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k 195 (292)
|+|.-|.|+..+...-+.+.+.||.+.|...+.++|.+.+| .||||++.+..|. +.+ .|+.|..-+..
T Consensus 317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSSBHHHHHHTTCCHHHHHHHHTT
T ss_pred CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 46667999999998888899999999998888899999998 7999998753221 112 46777766665
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.01 E-value=0.00018 Score=69.89 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=52.3
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeEecC------CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~I~kKI~k 195 (292)
|+|.-|.|+..+...-+.+.+.||.+.|...+.|+|.+.+| +||||++.+. .|.+ .|+.|..-+..
T Consensus 213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 46667999999988888888999999998888899999998 7999998753 2322 46777766665
No 42
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.83 E-value=0.00031 Score=68.45 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=49.5
Q ss_pred cccccccCCCccccccccCccc-----CCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRI-----GYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 195 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~-----n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k 195 (292)
+|.-|.|+..+...-+.+.+.| |.+.|...+.+++.+.+| +||||++.+.+|. +.+ .|+.|..-+..
T Consensus 211 hviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 211 HVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence 3444999999988777788888 999998888899999988 7999998653321 111 36666666655
No 43
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=92.78 E-value=0.0092 Score=57.57 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=36.9
Q ss_pred cccccccCCCccccccccCcccCCCCcc--chhccccc-cccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFFP-ALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~--~l~~~~lp-gL~g~~~KMSkS~~~s~I~L~D 184 (292)
+-.+|.||..|+.--..+++.+|++.+. ++.+.++. +-+|...|||||.+| .|.+.|
T Consensus 239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 3468999999999888889999986542 23344552 225533599999986 666543
No 44
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=91.96 E-value=0.012 Score=56.99 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=33.0
Q ss_pred cccccccCCC-ccccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+..+|.||.. |.++--..+..+|.+.|. .+++.+|.. +| +|||||.+| .|.+.
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~ 307 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPY 307 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHH
Confidence 5789999987 444321122234665554 445666654 65 799999986 66543
No 45
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=91.31 E-value=0.019 Score=55.66 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=50.3
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ecC---CHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~I~kKI~k 195 (292)
|+|..|.||..|...-.-+.+.+|.+.|...+.+++.+.+| +||||++.+..|. +.+ .|+.|..-+..
T Consensus 220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGATSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCCBHHHHHHHTCCHHHHHHHHHT
T ss_pred CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999988888888999998898777888888887 7999998753221 111 35566655554
No 46
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=91.28 E-value=0.015 Score=56.13 Aligned_cols=52 Identities=19% Similarity=-0.018 Sum_probs=33.1
Q ss_pred cccccccCCC-cccc--ccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDP-YFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~-h~el--aR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+..+|.||.. |..+ ++- ..+|.+.|. .+++.+|..-+| +|||||.+| .|.+.
T Consensus 254 i~~~G~D~~~fh~~~~~a~~--~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~ 309 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTML--KAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPF 309 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHH--HHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHH
T ss_pred EEEEeechhhhHHHHHHHHH--HHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHH
Confidence 5789999987 3333 322 224665565 445677664355 799999986 66554
No 47
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=89.62 E-value=0.034 Score=54.73 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=31.6
Q ss_pred cccccccCCCccc-c--ccccCcccCCCCccch-hccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~e-l--aR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.||..++. + ++-.+ .|.+.|..+ .+.++ ..+| +|||||.+| .|.+.
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~ 351 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPV 351 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHH
T ss_pred eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHH
Confidence 5689999977311 1 22222 355556444 46777 5566 799999987 66543
No 48
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=87.75 E-value=0.052 Score=56.19 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=35.3
Q ss_pred CCCcccccccccccCCCccccccccCcc---cCCCCc--cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~h~elaR~ia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.+| +...|.||... =++|.++.- +|. .| .++.+.++...+| +|||||.+| .|..
T Consensus 480 ~P~d---~~v~G~Dii~~-W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP 539 (862)
T 1gax_A 480 YPGD---VLVTGYDILFL-WVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDP 539 (862)
T ss_dssp CSBS---CEEEEGGGTTT-THHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCH
T ss_pred CCce---EEecCcccccc-HHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCH
Confidence 4555 56899998753 345544432 233 34 3445778887787 799999987 5544
No 49
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=87.44 E-value=0.032 Score=54.24 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=29.7
Q ss_pred cccccccCCCc-cccccccCcccCCCCcc-chhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h-~elaR~ia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+..+|.||... ..+-...+..+|.+.|. ++.+.+|.. +| +|||||.+| .|.+
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p 321 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDP 321 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCH
Confidence 56899999752 22111112223555553 344566554 55 899999976 5554
No 50
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=86.74 E-value=0.054 Score=52.86 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=21.0
Q ss_pred cccccccCCCcc-cc--ccccCcccCCCCccch-hccccccccCCcccccccCCCceeEec
Q 022791 127 LIPCAIDQDPYF-RM--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 127 ~vpvG~DQ~~h~-el--aR~ia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+...|.||...+ .+ ++-.+ +|.+.|..+ .+.++. ++| +|||||.+| .|.+.
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~ 333 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPF 333 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHH
Confidence 568899998731 11 33222 355555443 466664 465 799999986 66543
No 51
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=86.67 E-value=0.17 Score=52.80 Aligned_cols=56 Identities=27% Similarity=0.134 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCC---ccccccccCcccCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~---h~elaR~ia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.+| +...|.||.. |-.+....+ -+|..++ .++.+.++...+| +|||||.+| .|.+
T Consensus 547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P 606 (917)
T 1ffy_A 547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVP 606 (917)
T ss_dssp SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCH
T ss_pred CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCCh
Confidence 5566 5689999963 222333333 1243222 3345677776666 799999987 5543
No 52
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=85.09 E-value=0.21 Score=48.52 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=29.6
Q ss_pred cccccccCCCcc---ccccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~---elaR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+...|.||..++ ..|+-++. |.+.|..+. +.++ ..+| +|||||.+| .|..
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l-~~~G--~KMSKSlGN-vi~p 334 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWW-TKDR--KKISKSLGN-VFDP 334 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCC-EETT--BCCBTTTTB-CCCH
T ss_pred EEEecccccccccchhHHHHHhh--cccccceeccccce-ecCC--ceeccccCC-CCCh
Confidence 467899996643 12333332 555554443 5554 3455 899999987 5543
No 53
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=85.07 E-value=0.11 Score=53.51 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=29.7
Q ss_pred cccccccCCCccccccccCc--c-cCCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYFRMTRDVAP--R-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~--r-~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+...|.||.... +++-++. - +|.+.+ .++.+.++...+| +|||||.+| .|.+
T Consensus 547 l~~~G~D~~r~w-~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p 602 (821)
T 1ile_A 547 FIAEGIDQTRGW-FNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDP 602 (821)
T ss_dssp BEEEEGGGGGTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCH
T ss_pred cccchhhhhccH-HHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCH
Confidence 456899996421 1221111 1 133333 3445777777777 799999987 5544
No 54
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=84.77 E-value=0.086 Score=50.63 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=29.5
Q ss_pred cccccccCC-Ccccc--ccccCcccCCCCccc-hhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQD-PYFRM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~-~h~el--aR~ia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+..+|.|+. +|++. +.-.|- +|.+.|.. +++.+|.. +| +|||||.+| .|.+
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~ 277 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTV 277 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBH
T ss_pred EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccCh
Confidence 457799976 45432 222221 46554533 44566543 55 799999986 5554
No 55
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=84.70 E-value=0.053 Score=51.34 Aligned_cols=52 Identities=21% Similarity=0.126 Sum_probs=20.4
Q ss_pred cccccccCCC-ccccccccCccc-CCCCcc-chhc-cccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIES-SFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR~ia~r~-n~~~p~-~l~~-~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.++|.|+.. |++...-...-+ |.+.+. .+.+ .+|. ++| +|||||..| .|.+
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~ 302 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV 302 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence 5678999876 666543333332 553332 3333 4543 466 799999986 5554
No 56
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=83.35 E-value=0.059 Score=52.56 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=23.1
Q ss_pred cccccCCC-c--cccccccC-cccCCCCccchhccccccccCCcccccccCCC
Q 022791 129 PCAIDQDP-Y--FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPN 177 (292)
Q Consensus 129 pvG~DQ~~-h--~elaR~ia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~ 177 (292)
++|.|+.. | .....+++ .-+|.+.|..+++++|.. .|.++|||||.+|
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn 286 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN 286 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC
Confidence 66888766 2 11224444 467877787777777765 3223899999986
No 57
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=83.15 E-value=0.53 Score=45.55 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=47.6
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCCceeE-ec---CCHHHHHHHhhh
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 195 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~I~kKI~k 195 (292)
|+|.-|.|....---=..+.+.||.+.|...+.|+|.+-+| +||||.++..+|. +- =.|+.|..-+..
T Consensus 222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 57778888765543344456678999998888899998887 7999998643331 11 147777777665
No 58
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=83.07 E-value=0.091 Score=51.55 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=28.9
Q ss_pred cccccccCCCcc-ccccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDPYF-RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~h~-elaR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+-.+|.||..++ .+=-.+...+|++.|..+. +.++.. +| +|||||.+| .|.+
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p 356 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKA 356 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBH
T ss_pred EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCH
Confidence 345688987721 1110111224556664433 555543 65 799999987 6654
No 59
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=81.76 E-value=0.18 Score=52.79 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCC-ccccccccCcc-cCC-CCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 120 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~-h~elaR~ia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.+| +...|.||.. |+...+-...- ++. +-| ..+++.++.. +| +|||||.+| .|.+
T Consensus 602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p 661 (967)
T 1wz2_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNF 661 (967)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBH
T ss_pred CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCH
Confidence 4566 4579999965 43433221111 222 223 3445666654 65 799999987 5554
No 60
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=80.72 E-value=0.18 Score=51.69 Aligned_cols=57 Identities=19% Similarity=0.062 Sum_probs=32.0
Q ss_pred CCCcccccccccccCCC-ccccccccCcc-cCC-CCc-cchhccccccccCCcccccccCCCceeEec
Q 022791 120 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 183 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ~~-h~elaR~ia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 183 (292)
+.+| +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +| +|||||.+| .|.+.
T Consensus 602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~ 662 (810)
T 1wkb_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFI 662 (810)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHH
T ss_pred CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHH
Confidence 4555 4579999976 54443221111 221 223 3344666553 55 799999987 66543
No 61
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=78.65 E-value=0.16 Score=50.34 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=34.5
Q ss_pred cccccccCCCccccccccCcccCCCCc--c--chhccccccccCCcccccccCCCceeEecC
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKP--A--LIESSFFPALQGETGKMSASDPNSAIYVTD 184 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p--~--~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 184 (292)
+-.+|.||..|+.-...+++.+|++.+ . ++.+.+|. +.| +|||||.+| .|.+.|
T Consensus 350 iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g--~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 350 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHH
T ss_pred EEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCC--CcccCCCCC-ccCHHH
Confidence 336889999999988889999998542 2 22234453 355 799999986 665543
No 62
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=77.96 E-value=0.52 Score=45.07 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=10.9
Q ss_pred ccccCCC--cccccccccccCCCccc
Q 022791 116 HLFSGKD--HLRCLIPCAIDQDPYFR 139 (292)
Q Consensus 116 Dil~~~a--d~~~~vpvG~DQ~~h~e 139 (292)
||+.... ..||+||||.||++|.|
T Consensus 223 Dil~~~~d~~~~~~vp~~~d~~~~~~ 248 (451)
T 3foc_A 223 PVYSTYFDGLPFTRVPLPVGTGNEDA 248 (451)
T ss_dssp GGSGGGGTTSGGGCCBCC--------
T ss_pred HHHHhhcCCCCccccccccccccchh
Confidence 7763322 35789999999999954
No 63
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=74.63 E-value=0.18 Score=48.50 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=29.4
Q ss_pred cccccccCCC-ccccccccCcc---cCCCCccchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQDP-YFRMTRDVAPR---IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ~~-h~elaR~ia~r---~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+.-+|.|... |++ +++|.. +|.|-+...+|..+...+| +|||||.+| .|.+
T Consensus 226 ih~gG~Dl~FpHhe--neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKSlGN-~i~~ 280 (462)
T 3tqo_A 226 IHGGGLDLKFPHHE--NEIAQSEAGEEKPFVKLWMHAGLLEINK--EKMSKSLGN-IISI 280 (462)
T ss_dssp EEEEEGGGTTTHHH--HHHHHHHHHHSSCCEEEEEEECCEEETT--EECCTTTTC-CCBH
T ss_pred EEccccccccHHHH--hHHHHHHHHcCCCcceEEEEccEEecCC--cCccccCCC-cccH
Confidence 4678888654 654 334332 2333233334444455677 899999987 5544
No 64
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=74.39 E-value=0.88 Score=47.12 Aligned_cols=20 Identities=10% Similarity=-0.129 Sum_probs=14.4
Q ss_pred CCCcccccccccccC-CCcccccc
Q 022791 120 GKDHLRCLIPCAIDQ-DPYFRMTR 142 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ-~~h~elaR 142 (292)
+.+| +..+|.|| .-|+-.+|
T Consensus 542 ~PvD---~yigG~EHailHllyaR 562 (880)
T 4arc_A 542 LPVD---IYIGGIEHAIMHLLYFR 562 (880)
T ss_dssp CSEE---EEECCGGGTTTHHHHHH
T ss_pred CCce---EeecchhhHHHHHHHHH
Confidence 4555 56899999 55776776
No 65
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=73.57 E-value=0.13 Score=50.57 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=34.7
Q ss_pred cCCccccCCCCCCCCCccccCCCcccccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCC
Q 022791 100 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 177 (292)
Q Consensus 100 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~ 177 (292)
.||..+-|.. + |.-..+. |+|..|.|...+-..=.-+...+|.+.|...+.++| .++| .|||||..+
T Consensus 270 g~PtYhfa~~----v-DD~~~GI---ThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g--~KLSKR~~~ 336 (553)
T 3aii_A 270 VYPMMNFSVA----V-DDHLLGV---THVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRL-KMDD--VALSTSGAR 336 (553)
T ss_dssp EEECHHHHHH----H-HHHHTTC---CEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCB-C---------CHHHH
T ss_pred eeeeeeeeee----e-eeccCCC---ceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCC--ceechhhhh
Confidence 4666666532 2 3333343 588999998866544444456788888887788888 5666 799999653
No 66
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=71.70 E-value=0.61 Score=45.30 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred ccccccccCCCccccccccCcccCCCCccchhccccccccCCcccccccCCC
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 177 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~ 177 (292)
|+|.-|.|...+--.=+-+.+-||.+.|...+.|+|.+-+| +|+||.+..
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 68899999877766666677889999999999999999988 799999753
No 67
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=66.93 E-value=0.43 Score=46.26 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=19.8
Q ss_pred cccccccC-CCccccccccCccc-CCCCc-cchhccccccccCCcccccccCCCceeEe
Q 022791 127 LIPCAIDQ-DPYFRMTRDVAPRI-GYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 182 (292)
Q Consensus 127 ~vpvG~DQ-~~h~elaR~ia~r~-n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 182 (292)
+-.+|.|. .+|++.-.-.+.-. +.|-+ ..+++.+|. ++| .|||||.+| .|.+
T Consensus 256 IH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~ 310 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITV 310 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCH
T ss_pred EEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCH
Confidence 45788885 45665443333322 22222 233445653 566 799999987 4443
No 68
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=64.27 E-value=2 Score=44.39 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=22.3
Q ss_pred CCCcccccccccccC-CCccccccccCc---c---cCCCCc--cchhcccccc
Q 022791 120 GKDHLRCLIPCAIDQ-DPYFRMTRDVAP---R---IGYHKP--ALIESSFFPA 163 (292)
Q Consensus 120 ~~ad~~~~vpvG~DQ-~~h~elaR~ia~---r---~n~~~p--~~l~~~~lpg 163 (292)
+.+| +...|.|| .-|+-.+|=+.. - +...+| ..+.+.++.+
T Consensus 530 ~P~D---~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~ 579 (878)
T 2v0c_A 530 MPVD---QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLA 579 (878)
T ss_dssp CSBS---EEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEE
T ss_pred CCCe---EEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEec
Confidence 4566 57899999 455554443221 1 122455 3344677754
No 69
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=64.23 E-value=1.5 Score=44.33 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCccc-hhccccccccCCcccccccCCCceeEecC-----CHHHHHHHhhh
Q 022791 150 YHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 195 (292)
Q Consensus 150 ~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~I~kKI~k 195 (292)
.+.|.. +.+.+|.. +| +|||||.+| .|+..| .++.+|=-+..
T Consensus 326 ~~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d~i~~ygaDalR~~ll~ 373 (722)
T 1rqg_A 326 WNLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHEFLDVFPADYLRYYLTT 373 (722)
T ss_dssp BCCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHHHHHhcCchHHHHHHHh
Confidence 345543 34666654 66 799999986 666532 24445544444
No 70
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=63.87 E-value=0.45 Score=47.42 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=38.4
Q ss_pred ccccccccCCCccccccccCcccCCCC-cc---chhccccccccCCcccccccCC--CceeEecC
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PA---LIESSFFPALQGETGKMSASDP--NSAIYVTD 184 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~~-p~---~l~~~~lpgL~g~~~KMSkS~~--~s~I~L~D 184 (292)
++-.+|.||..|+.-...+++.+|++. +. ++.+.+|. +.| +|||||.+ | .|.+.|
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~--~KMSkr~G~~n-~v~l~d 439 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPE--GKFSGRKGTWV-GFTVDE 439 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTT--BCCCTTTTTTT-TCBHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCC--CcccCCCCCCC-eeeHHH
Confidence 355678999999988888888899854 32 22234443 344 79999998 7 666544
No 71
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=52.45 E-value=0.8 Score=44.90 Aligned_cols=49 Identities=22% Similarity=0.143 Sum_probs=32.7
Q ss_pred ccccccccCCCccccccccCcccCCC-CccchhccccccccCCcccccccCCC
Q 022791 126 CLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPN 177 (292)
Q Consensus 126 ~~vpvG~DQ~~h~elaR~ia~r~n~~-~p~~l~~~~lpgL~g~~~KMSkS~~~ 177 (292)
|+|..|.|...|-.+=.-+.+.+|.+ .|...+..+| +++| .|||||+.+
T Consensus 225 THviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hL-n~~g--~KLSKR~~~ 274 (553)
T 1qtq_A 225 THSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-NLEY--TVMSKRKLN 274 (553)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCC-CBTT--SCCCHHHHH
T ss_pred ceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEee-cCCC--ccccccccc
Confidence 58899999877654443344567776 4655554454 6677 799999753
No 72
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=50.13 E-value=1.2 Score=44.20 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=37.7
Q ss_pred cccccccCCCccccccccCcccCCCCccchh-ccccccccCCcccccccCCCceeEecCC
Q 022791 127 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTDS 185 (292)
Q Consensus 127 ~vpvG~DQ~~h~elaR~ia~r~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~D~ 185 (292)
+-.+|.||..|+.-...+++.+|++.+..+. .++ |+- .||||+.++ .|.|.|=
T Consensus 368 IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dL 421 (607)
T 1f7u_A 368 IYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNI 421 (607)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHH
T ss_pred EEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHH
Confidence 3459999999999888999999986553333 343 222 379999876 7766443
No 73
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=21.29 E-value=13 Score=38.19 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=36.3
Q ss_pred hhhH-HhhcCcceEEEeeccccccccccCHHHHHHHHHhchhhhhhccCCCCceeEecCCcccc
Q 022791 3 TKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 65 (292)
Q Consensus 3 ~~~l-Q~~~g~~~~I~iaD~hA~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~ 65 (292)
.+|+ -..+|..+++=|-|. +.. ....++...++.++-.+|++++. .++.||+..+
T Consensus 89 ~n~l~Ar~~gG~fiLRIEDT----D~~---R~~~e~~~~IledL~wLGl~wde-~~~~qSer~d 144 (851)
T 2hz7_A 89 LDFNTARQYGGQFNLRMDDT----NPE---LARQEYVDSIADDLKWLGLDWGE-HFYYASDYFD 144 (851)
T ss_dssp HHHHHHHHTTCEEEEEECCC----CTT---TCCHHHHHHHHHHHHHHTCCCTT-CEEEGGGGHH
T ss_pred HHHHHHHHcCCEEEEEECcC----Ccc---cccHHHHHHHHHHHHHcCCCCCC-CcccHhhhHH
Confidence 4563 334788888887773 321 22446667778888899999854 3677887653
Done!