RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022791
(292 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 221 bits (564), Expect = 1e-70
Identities = 181/289 (62%), Positives = 229/289 (79%), Gaps = 2/289 (0%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD
Sbjct: 97 IFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 156
Query: 61 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 118
DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 157 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIF 216
Query: 119 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS
Sbjct: 217 RDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 276
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 238
+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+
Sbjct: 277 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 336
Query: 239 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 287
K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 337 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 92.7 bits (229), Expect = 2e-22
Identities = 42/283 (14%), Positives = 83/283 (29%), Gaps = 30/283 (10%)
Query: 1 MFTKYLQDA-----FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 55
A + D+ K W L + + G + K
Sbjct: 54 SKIADFLKAGCEVTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKL 112
Query: 56 FIFSDFDYVGGAFY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSF 110
DY Y + V + + + + + +P +QA+
Sbjct: 113 KFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE 172
Query: 111 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 170
IDQ F P +GY K + + P L K
Sbjct: 173 YLKV-----------DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSK 219
Query: 171 MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE- 229
MS+S+ S I + D + +K K+ K G ++ + +++ E
Sbjct: 220 MSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEK 279
Query: 230 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
++K++ A + G++K + L +L++ +
Sbjct: 280 WGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 91.7 bits (227), Expect = 5e-22
Identities = 33/281 (11%), Positives = 76/281 (27%), Gaps = 25/281 (8%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
+ + Q A P+ + + E A+E + A + F+ +
Sbjct: 53 LTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFE 112
Query: 61 FDY------VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSS 113
D + + + K + ++ + + S+
Sbjct: 113 ADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMML 172
Query: 114 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 173
+ F D + +T + A P + G
Sbjct: 173 QAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFG 232
Query: 174 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDA 232
+ I++ S + N + ++YL +F
Sbjct: 233 KTESGTIWLDKEKT----------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKE 276
Query: 233 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 273
E+E +++E ++ LA+ +T+LV + R A+
Sbjct: 277 EIEALEQELREAPEKR-AAQKTLAEEVTKLVHGEEALRQAI 316
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 70.6 bits (172), Expect = 1e-14
Identities = 30/279 (10%), Positives = 77/279 (27%), Gaps = 24/279 (8%)
Query: 1 MFTKYLQDA--FKVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFI 57
+ + Q+ + L+ T K+ + + I+ F
Sbjct: 54 LTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFG 113
Query: 58 FSDFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSF 114
+ + + ++ Y K VG+ G + ++ ++
Sbjct: 114 TDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQ 173
Query: 115 PHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 174
F + D + +T + + P + GK
Sbjct: 174 AIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGK 233
Query: 175 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAE 233
+ A+++ + S + N + +K+L +F E
Sbjct: 234 SESGAVWLDAE----------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEE 277
Query: 234 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 272
++ +++ L E ++ LA+ +T+ + A
Sbjct: 278 IDRLEQSKNEAPHLR-EAQKTLAEEVTKFIHGEDALNDA 315
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 67.3 bits (163), Expect = 2e-13
Identities = 40/274 (14%), Positives = 83/274 (30%), Gaps = 27/274 (9%)
Query: 1 MFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 60
LQ+A ++I L D + + ++E +++ N K A G +
Sbjct: 50 KKMIDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEF 108
Query: 61 FDYVGGA-FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 119
+ + + + E+ P +
Sbjct: 109 QLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVN 157
Query: 120 GKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 178
+L ++Q + R+ + K I + L GE +S +
Sbjct: 158 DIHYLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGN 211
Query: 179 AIYVTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAE 233
I V DS + I+ KI K G + L L + P K+
Sbjct: 212 FIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNS 269
Query: 234 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 267
E ++ + + ++K +A+ L +++E +
Sbjct: 270 YEELESLFKNKELHPMDLKNAVAEELIKILEPIR 303
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 26.2 bits (58), Expect = 2.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 246 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 281
MLTG+ K+ L + + Q+ + + + M+
Sbjct: 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQI 36
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.3 bits (58), Expect = 2.2
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 229 EDDAELEHIKKEY----GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM-A 283
ED + + G G + +L L ++++ + + +T +++D
Sbjct: 33 EDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92
Query: 284 VRPLPNMFD 292
V + M D
Sbjct: 93 VDMITRMVD 101
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 25.5 bits (56), Expect = 2.9
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 251 VKQRLAKVLTELVERHQV 268
V+ RLA+ L L E
Sbjct: 2 VRGRLAETLLILKENFGF 19
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.3 bits (57), Expect = 3.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 249 GEVKQRLAKVLTELVE 264
G+V L+ + ELVE
Sbjct: 1 GQVVLSLSTAVKELVE 16
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 80
Score = 25.1 bits (55), Expect = 4.1
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 250 EVKQRLAKVLTELVERHQVA 269
++KQR+A +
Sbjct: 1 DIKQRIAGFFIDHANTTGRQ 20
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 4.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 245 GMLTGEVKQRLAKVLTELVERH 266
L + K LA +T+++ RH
Sbjct: 10 RELDEQQKAALAADITDVIIRH 31
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497
{Methanosarcina mazei [TaxId: 2209]}
Length = 208
Score = 26.1 bits (57), Expect = 4.5
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 249 GEVKQRLAKVLTELVERHQVARAAVTD 275
K RL+ VL+ ER + +
Sbjct: 10 AGAKSRLSPVLSL-QEREEFVELMLNQ 35
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
[TaxId: 274]}
Length = 134
Score = 25.2 bits (55), Expect = 5.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 247 LTGEVKQRLAKVLTELVERHQVARAAVTD 275
L G +R +VL E + A + D
Sbjct: 3 LYGAPYERAVEVLEETLRETGARYALLID 31
>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda
constant domain, CL-lambda {Hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 104
Score = 25.0 bits (54), Expect = 5.9
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 110 FPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 143
FP S L + K L CL+ +
Sbjct: 11 FPPSPEELRTNKATLVCLVNDFYPGSATVTWKAN 44
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 25.5 bits (55), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 249 GEVKQRLAKVLTELVE 264
GEV +R A V+ ELVE
Sbjct: 19 GEVVERPASVVKELVE 34
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 25.1 bits (55), Expect = 8.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 13 PLVIQLTDDEKCMWKNLSVEESQRLAR 39
L + EK W +LS++E L R
Sbjct: 32 ASQKALKEKEKASWSSLSIDEKVELYR 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,098,452
Number of extensions: 51985
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 19
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)