BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022792
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 56/302 (18%)
Query: 1 MGAFVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCR 52
+ F L+P P+G ++C I R++ TY+L+L +DGK FLLA RK +
Sbjct: 18 LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRK 72
Query: 53 RPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQ 110
+ ++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + + RQ
Sbjct: 73 KSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ 132
Query: 111 VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFH 170
+A + YE NVLG +GPR+M + +P ++ V+ H
Sbjct: 133 ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPRNEH 174
Query: 171 HSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVAS 230
+ L +QN E ++ L+NK P W++ Q + LNF+GRVT AS
Sbjct: 175 ETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQAS 218
Query: 231 VKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA 290
VKNFQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+A
Sbjct: 219 VKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 271
Query: 291 CE 292
CE
Sbjct: 272 CE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 56/299 (18%)
Query: 4 FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPT 55
F L+P P+G ++C I R++ TY+L+L +DGK FLLA RK ++
Sbjct: 13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSK 67
Query: 56 CTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNM 113
++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + + RQ
Sbjct: 68 TSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ--- 124
Query: 114 KQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSG 173
+A + YE NVLG +GPR+M + +P ++ V H +
Sbjct: 125 ------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETL 169
Query: 174 LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKN 233
L +QN E ++ L+NK P W++ Q + LNF+GRVT ASVKN
Sbjct: 170 L----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 213
Query: 234 FQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
FQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 214 FQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 56/299 (18%)
Query: 4 FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPT 55
F L+P P+G ++C I R++ TY+L+L +DGK FLLA RK ++
Sbjct: 13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSK 67
Query: 56 CTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNM 113
++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + + RQ
Sbjct: 68 TSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ--- 124
Query: 114 KQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSG 173
+A + YE NVLG +GPR+M + +P ++ V H +
Sbjct: 125 ------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETL 169
Query: 174 LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKN 233
L +QN E ++ L+NK P W++ + + LNF+GRVT ASVKN
Sbjct: 170 L----------------ARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKN 213
Query: 234 FQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
FQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 214 FQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 155/295 (52%), Gaps = 52/295 (17%)
Query: 4 FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCT 57
FVL+P P+G ++C + R++ +Y+L+L + FLLA RK +R
Sbjct: 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTA 82
Query: 58 DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVS 117
+Y+IS++ ++S+G +IG+LRSN LG +FT++D T S RQ
Sbjct: 83 NYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------- 135
Query: 118 PKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSF 177
+A + YE NVLG RGPRRM + IP S E V P + GL
Sbjct: 136 --------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL--- 180
Query: 178 PSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 237
+QN E L+ L NK P W++ + LNF GRVT ASVKNFQ+V
Sbjct: 181 ------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV 228
Query: 238 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
+ + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 229 HA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 150/289 (51%), Gaps = 52/289 (17%)
Query: 4 FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCT 57
FVL+P P+G ++C + R++ +Y+L+L + FLLA RK +R
Sbjct: 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTA 58
Query: 58 DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVS 117
+Y+IS++ ++S+G +IG+LRSN LG +FT++D T S RQ
Sbjct: 59 NYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------- 111
Query: 118 PKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSF 177
+A + YE NVLG RGPRRM + IP S E V P + GL
Sbjct: 112 --------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL--- 156
Query: 178 PSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 237
+QN E L+ L NK P W++ + LNF GRVT ASVKNFQ+V
Sbjct: 157 ------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV 204
Query: 238 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286
+ + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 205 HA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|1M06|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly,
X-Ray Crystallography
pdb|1M0F|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly,
Cryo- Electron Microscopy
pdb|1RB8|G Chain G, The Phix174 Dna Binding Protein J In Two Different
Capsid Environments
Length = 187
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 30 LYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSS 73
LY +N S++ DG F++A + PT + +IS + G+S
Sbjct: 50 LYANMNVSTSSDGSFIVAMKVDTSPTDPNCVISAGVNLSFAGTS 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,688,152
Number of Sequences: 62578
Number of extensions: 342199
Number of successful extensions: 614
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 6
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)