Query 022792
Match_columns 292
No_of_seqs 140 out of 360
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 1.2E-97 3E-102 699.4 23.6 252 1-292 102-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 1E-84 2.3E-89 597.6 17.8 245 8-286 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 3.2E-20 7E-25 181.4 4.3 79 200-288 485-563 (565)
4 PF12043 DUF3527: Domain of un 98.5 1.6E-05 3.5E-10 76.7 19.8 58 224-287 287-344 (346)
5 PF04525 Tub_2: Tubby C 2; In 41.0 87 0.0019 27.2 6.3 78 13-93 62-144 (187)
6 PF08512 Rtt106: Histone chape 28.4 1E+02 0.0023 24.1 4.2 58 200-264 20-78 (95)
7 TIGR03562 osmo_induc_OsmC pero 19.7 87 0.0019 26.3 2.3 14 272-285 42-55 (135)
8 PF03803 Scramblase: Scramblas 18.9 4.2E+02 0.0091 23.3 6.8 25 70-94 112-138 (221)
9 PRK15095 FKBP-type peptidyl-pr 18.4 1.9E+02 0.0042 24.7 4.3 25 250-274 107-131 (156)
10 TIGR03561 organ_hyd_perox pero 14.1 2.1E+02 0.0046 23.4 3.4 15 272-286 40-54 (134)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-97 Score=699.37 Aligned_cols=252 Identities=60% Similarity=0.971 Sum_probs=225.5
Q ss_pred CcccccCCCCCCceEEEEEEEeccCCeEEEEeecccCCC--CCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcceeEE
Q 022792 1 MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGR 78 (292)
Q Consensus 1 m~~fL~~P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~--~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~yvGK 78 (292)
+++||+||+|+|.++||+|+|||+|.+|+||+.|.+++. ++++|||||||+|+++|+|||||+|++||||++++||||
T Consensus 102 ~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGk 181 (355)
T KOG2502|consen 102 FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGK 181 (355)
T ss_pred hhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeee
Confidence 478999999999999999999999999999999988653 678999999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCCcccC
Q 022792 79 LRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIE 158 (292)
Q Consensus 79 LRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~~~~~ 158 (292)
|||||+||+|||||+|.+. ++.++ +++++++|||+|+||+||||+||||||+|+||.||.++
T Consensus 182 lRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~-- 243 (355)
T KOG2502|consen 182 LRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA-- 243 (355)
T ss_pred eecccccceEEEecCCCCc----------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--
Confidence 9999999999999998332 12222 57889999999999999999999999999999999877
Q ss_pred CCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeeccccceeEEEe
Q 022792 159 PGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA 238 (292)
Q Consensus 159 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~ 238 (292)
++|..|.|+...+.. .+..+.....+++++|+||.|+||+++|||||||+||||+|||||||||+
T Consensus 244 ~~~~v~~q~~~~~~~---------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~ 308 (355)
T KOG2502|consen 244 PGGRVPVQPENDHPS---------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVH 308 (355)
T ss_pred CCCcccccccccccc---------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEec
Confidence 788888876654421 11112233468999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022792 239 SLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292 (292)
Q Consensus 239 ~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~k~aCe 292 (292)
.. ++++|||||||||+|+|||||+||||+||||||||||||+|+|||
T Consensus 309 ~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 309 AL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred cC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence 74 679999999999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=1e-84 Score=597.63 Aligned_cols=245 Identities=55% Similarity=0.920 Sum_probs=182.1
Q ss_pred CCCCCceEEEEEEEeccCCeEEEEeecccC-CCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcceeEEeeeceeec
Q 022792 8 PGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGT 86 (292)
Q Consensus 8 P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~-~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~yvGKLRSNflGT 86 (292)
|||++++|||+|+|+|+|.++.||+.+... +.++++|||||||+++++||||+||++++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 999999999999999998654444444332 2478899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCCcccCCCCCCCCc
Q 022792 87 KFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ 166 (292)
Q Consensus 87 ~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~~~~~~~g~~p~~ 166 (292)
+|+|||+|.+++.+. ..+|+.+..|+|||+|.||+||||++|||||+|+||+|+.+..++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999996554332 1245566789999999999999999999999999999987766555544332
Q ss_pred cccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeeccccceeEEEecccCCCCC
Q 022792 167 TEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 246 (292)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~~~~~~~~~ 246 (292)
+.- .+.+..+........+++++|+||+|+||+++++|+|||+|||++|||||||||++
T Consensus 148 p~~--------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~------- 206 (246)
T PF01167_consen 148 PLN--------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHP------- 206 (246)
T ss_dssp -SS---------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBT-------
T ss_pred ccc--------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEcc-------
Confidence 100 01111222223456689999999999999999999999999999999999999997
Q ss_pred CCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022792 247 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286 (292)
Q Consensus 247 ~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d 286 (292)
++.+++||||||+++|+|+|||+|||||+|||||||||||
T Consensus 207 ~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 207 SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.79 E-value=3.2e-20 Score=181.42 Aligned_cols=79 Identities=42% Similarity=0.734 Sum_probs=73.0
Q ss_pred ceEEeecCCCccccCcccEEeecCCeeeccccceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHH
Q 022792 200 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA 279 (292)
Q Consensus 200 ~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFa 279 (292)
.+.++.||+|-|||.+|-|+|||.||||+.|.||||+-.. .+-|||||+|+-+.|++||+||||+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 4569999999999999999999999999999999999764 578999999999999999999999999999
Q ss_pred HHHHcCccc
Q 022792 280 ICLSSFDTK 288 (292)
Q Consensus 280 ialss~d~k 288 (292)
+||++.-..
T Consensus 555 valanvtqR 563 (565)
T KOG2503|consen 555 VALANVTQR 563 (565)
T ss_pred HHHhhhhhh
Confidence 999986543
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.51 E-value=1.6e-05 Score=76.66 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=47.1
Q ss_pred CeeeccccceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCcc
Q 022792 224 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 287 (292)
Q Consensus 224 gRv~~~SvKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~ 287 (292)
.+...+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||+||||+||+|-.++
T Consensus 287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 44555567778888763 23444899999999999999999999999999999997764
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=41.03 E-value=87 Score=27.22 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=30.8
Q ss_pred ceEEEEEEEeccC--CeEEEEeecccCCCCCCeEEEEEEecCC-CCcceEEEEecCC-CC-CCCCcceeEEeeeceeecE
Q 022792 13 SLLQCYIKRNRSS--QTYYLYLGLNQSSNDDGKFLLAARKCRR-PTCTDYIISLNCD-DV-SKGSSTYIGRLRSNFLGTK 87 (292)
Q Consensus 13 ~~iqC~I~R~k~~--~~Y~Lyl~~~~~~~~~~kfLLaArKr~~-~~tsnYiIS~~~~-dl-sr~s~~yvGKLRSNflGT~ 87 (292)
|..-..|+|..-+ ++|..|.+.. .++.+.++..||... .......+.+.+. .. .-.+...-=+|+.|+++.+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 4555677774333 5898888522 223356778777621 2223333333321 11 0122233346899999999
Q ss_pred EEEecC
Q 022792 88 FTIYDG 93 (292)
Q Consensus 88 f~iyD~ 93 (292)
|+|||.
T Consensus 139 ~~I~~~ 144 (187)
T PF04525_consen 139 FTIYDS 144 (187)
T ss_dssp -EEEEC
T ss_pred EEEEEc
Confidence 999974
No 6
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=28.44 E-value=1e+02 Score=24.12 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=35.5
Q ss_pred ceEEe-ecCCCccccCcccEEeecCCeeeccccceeEEEecccCCCCCCCCCeEEEEEeeeCCCeE
Q 022792 200 GLLVL-RNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVF 264 (292)
Q Consensus 200 ~~~~l-~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f 264 (292)
+.+.+ ..|||.+=.-..--.++| .||...+.|+|.|+-.- .+......+|.-|.++.+
T Consensus 20 ~~l~f~~~kP~~~i~~~dI~~v~f-eRv~~~~~ktFDl~v~~------k~~~~~~~~fs~I~~~e~ 78 (95)
T PF08512_consen 20 KCLLFGLEKPPFVIPLDDIESVEF-ERVSSFSSKTFDLVVIL------KDYEGPPHEFSSIDREEY 78 (95)
T ss_dssp SEEEEECSSS-EEEEGGGEEEEEE-E--ESSSSSEEEEEEEE------TT-TS-EEEEEEEEGGGH
T ss_pred ceEEEecCCCeEEEEhhHeeEEEE-EecccCcceEEEEEEEE------ecCCCCcEEEeeECHHHH
Confidence 45555 777776544333444555 46688999999999763 123467888888877654
No 7
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=19.70 E-value=87 Score=26.26 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcC
Q 022792 272 ISAFQAFAICLSSF 285 (292)
Q Consensus 272 lS~~QAFaialss~ 285 (292)
.+|.|.|+.||++|
T Consensus 42 ~nPeeLLlaAlaaC 55 (135)
T TIGR03562 42 TNPEELIAAAHAGC 55 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999986
No 8
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=18.91 E-value=4.2e+02 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.0
Q ss_pred CCCcceeEEeee--ceeecEEEEecCC
Q 022792 70 KGSSTYIGRLRS--NFLGTKFTIYDGH 94 (292)
Q Consensus 70 r~s~~yvGKLRS--NflGT~f~iyD~G 94 (292)
...+.+||+++. ++.+.+|.|+|..
T Consensus 112 ~p~g~~iG~I~q~~~~~~~~f~I~d~~ 138 (221)
T PF03803_consen 112 SPPGNLIGSIRQPFSCCRPNFDIFDAN 138 (221)
T ss_pred cCCCcEEEEEEEcCcccceEEEEEECC
Confidence 456789999998 4579999999986
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=18.42 E-value=1.9e+02 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=20.5
Q ss_pred CeEEEEEeeeCCCeEEEEccCCCCH
Q 022792 250 ENVILQFGKVGKDVFTMDYQYPISA 274 (292)
Q Consensus 250 ~~~vlqfGk~~~~~f~lD~~~PlS~ 274 (292)
+.+....-+++++..++||.|||..
T Consensus 107 ~~~~~~V~~i~~~~v~vD~NHPLAG 131 (156)
T PRK15095 107 SEMPGVIREINGDSITVDFNHPLAG 131 (156)
T ss_pred CEEEEEEEEEcCCEEEEECCCcCCC
Confidence 4555667789999999999999964
No 10
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=14.11 E-value=2.1e+02 Score=23.40 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHcCc
Q 022792 272 ISAFQAFAICLSSFD 286 (292)
Q Consensus 272 lS~~QAFaialss~d 286 (292)
.+|.|.|+.||++|-
T Consensus 40 ~nP~ell~aAlasC~ 54 (134)
T TIGR03561 40 TNPEQLFAAGYAACF 54 (134)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998863
Done!