Query 022792
Match_columns 292
No_of_seqs 140 out of 360
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 3.7E-90 1.3E-94 640.8 24.6 246 1-292 25-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.3E-87 4.6E-92 615.1 24.8 240 1-286 1-246 (246)
3 1zxu_A AT5G01750 protein; PFAM 40.0 1.1E+02 0.0036 26.0 8.1 52 40-94 83-137 (217)
4 1lql_A OSMC, osmotical inducib 20.4 59 0.002 26.7 2.8 15 272-286 64-78 (166)
5 2ypj_A Eccel5A, endoglucanase 20.0 71 0.0024 25.7 2.9 28 231-265 67-94 (155)
6 4ba6_A Endoglucanase CEL5A; ca 19.3 75 0.0026 25.2 2.9 27 232-265 49-75 (144)
7 3cgm_A SLYD, peptidyl-prolyl C 17.7 1.6E+02 0.0053 24.1 4.8 24 251-274 100-123 (158)
8 2ql8_A Putative redox protein; 17.5 84 0.0029 24.9 3.0 15 272-286 46-60 (143)
9 2kr7_A FKBP-type peptidyl-prol 15.9 2E+02 0.0069 23.1 5.0 23 251-273 109-131 (151)
10 2bjo_A Organic hydroperoxide r 14.6 1.1E+02 0.0037 23.8 2.9 15 272-286 42-56 (136)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=3.7e-90 Score=640.81 Aligned_cols=246 Identities=41% Similarity=0.751 Sum_probs=188.3
Q ss_pred CcccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcc
Q 022792 1 MGAFVLQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSST 74 (292)
Q Consensus 1 m~~fL~~P~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~ 74 (292)
|++||+||+|+++++||+|+|+|+| ++|+||++ .++++|||||||+++++|+||+||+|++|++|++++
T Consensus 25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~ 99 (276)
T 2fim_A 25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN 99 (276)
T ss_dssp CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence 7899999999999999999999998 69999995 467899999999999999999999999999999999
Q ss_pred eeEEeeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCC
Q 022792 75 YIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPA 154 (292)
Q Consensus 75 yvGKLRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~ 154 (292)
|||||||||+||+|+|||+|.+++.+ .+|+++.+|+|||+|.||+|++|++|||+|+|+||.+.
T Consensus 100 yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~- 163 (276)
T 2fim_A 100 FIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS- 163 (276)
T ss_dssp EEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEECBC-
T ss_pred EEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc-
Confidence 99999999999999999999543321 24556678899999999999999999999999998642
Q ss_pred cccCCCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeecccccee
Q 022792 155 SSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNF 234 (292)
Q Consensus 155 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNF 234 (292)
+.++..|.+ +... .+..+..+.+...+++++|+||+|+|||++|+|||||+||||+||||||
T Consensus 164 ---~~~~~~~~~----p~~~-----------~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNF 225 (276)
T 2fim_A 164 ---AENERVPIR----PRNA-----------SDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 225 (276)
T ss_dssp ---TTSCBCCCC----CSST-----------TCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCE
T ss_pred ---cCCCEeccc----CCCc-----------ccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceE
Confidence 223322221 1110 0111111223455789999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022792 235 QLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292 (292)
Q Consensus 235 qLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~k~aCe 292 (292)
|||++ ++++.||||||||++|+|+|||+|||||||||||||||||+|+|||
T Consensus 226 QLv~~-------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 226 QIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp EEECT-------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred EEEec-------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99987 3678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.3e-87 Score=615.07 Aligned_cols=240 Identities=40% Similarity=0.731 Sum_probs=193.7
Q ss_pred CcccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcc
Q 022792 1 MGAFVLQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSST 74 (292)
Q Consensus 1 m~~fL~~P~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~ 74 (292)
|++||+||+|++++|||+|+|||+| ++||||++ .++++|||||||+++++||||+||+|++|++|++++
T Consensus 1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~ 75 (246)
T 3c5n_A 1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN 75 (246)
T ss_dssp CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCce
Confidence 7899999999999999999999998 68999985 456789999999999999999999999999999999
Q ss_pred eeEEeeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCC
Q 022792 75 YIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPA 154 (292)
Q Consensus 75 yvGKLRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~ 154 (292)
|||||||||+||+|+|||+|.+++.+ .+|+++.+|+|||+|.||+|++|++|||+|+|+||.+.
T Consensus 76 yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~- 139 (246)
T 3c5n_A 76 FIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS- 139 (246)
T ss_dssp EEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC-
T ss_pred EEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc-
Confidence 99999999999999999999544321 24556678899999999999999999999999998642
Q ss_pred cccCCCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeecccccee
Q 022792 155 SSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNF 234 (292)
Q Consensus 155 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNF 234 (292)
+.++..|.+ +... .+..+..+.+...+++++|+||+|+|||++|+|||||+||||+||||||
T Consensus 140 ---~~~~~~~~~----p~~~-----------~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNF 201 (246)
T 3c5n_A 140 ---AENERVPIR----PRNA-----------SDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 201 (246)
T ss_dssp ---TTSCBCCCC----CSST-----------TSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCE
T ss_pred ---cCCCEeecc----CCCc-----------cccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceE
Confidence 223323221 1110 0111111223455789999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022792 235 QLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286 (292)
Q Consensus 235 qLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d 286 (292)
|||+++ +++.||||||||++|+|+|||+|||||||||||||||||
T Consensus 202 qLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 202 QIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp EEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred EEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999873 678999999999999999999999999999999999998
No 3
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=39.96 E-value=1.1e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcceeEEeeec--e-eecEEEEecCC
Q 022792 40 DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSN--F-LGTKFTIYDGH 94 (292)
Q Consensus 40 ~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~yvGKLRSN--f-lGT~f~iyD~G 94 (292)
..|+-|+.-|++..+-...|-|...... ....-||.+|.. + ++++|.|++.+
T Consensus 83 ~~G~~l~~i~rk~~~~~~~~~v~~~~~~---~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 83 GSGTPVVTLREKMVSMHDRWQVFRGGST---DQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEEC------CEEEEEETTCC---CGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccccCcEEEEEcCCCC---CCCcEEEEEEEeccccCCCeEEEEECC
Confidence 4566666666654444566666543211 122457888654 3 46788888765
No 4
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=20.43 E-value=59 Score=26.66 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHcCc
Q 022792 272 ISAFQAFAICLSSFD 286 (292)
Q Consensus 272 lS~~QAFaialss~d 286 (292)
.+|.|.|+.||++|-
T Consensus 64 ~nP~ELllaalaaC~ 78 (166)
T 1lql_A 64 FGPLAALLSGLAACE 78 (166)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 699999999998863
No 5
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=19.96 E-value=71 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=21.3
Q ss_pred cceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEE
Q 022792 231 VKNFQLVASLENGVAGQEHENVILQFGKVGKDVFT 265 (292)
Q Consensus 231 vKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~ 265 (292)
-|||.+-.+- ..-.|||.|.|+.++.+.
T Consensus 67 nknfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 67 NKNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp TSCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 3899986542 345899999999998764
No 6
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=19.30 E-value=75 Score=25.24 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=20.8
Q ss_pred ceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEE
Q 022792 232 KNFQLVASLENGVAGQEHENVILQFGKVGKDVFT 265 (292)
Q Consensus 232 KNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~ 265 (292)
|||.+-.+- ..-.|||.|.|+.++.+.
T Consensus 49 knfeikvdy-------~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 49 KNFEIKVDY-------NGADIVLIFARWDKDIWA 75 (144)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899886542 345899999999998764
No 7
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=17.72 E-value=1.6e+02 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.1
Q ss_pred eEEEEEeeeCCCeEEEEccCCCCH
Q 022792 251 NVILQFGKVGKDVFTMDYQYPISA 274 (292)
Q Consensus 251 ~~vlqfGk~~~~~f~lD~~~PlS~ 274 (292)
.+....=+++++..++|+.|||..
T Consensus 100 ~~~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 100 PMPLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEEEECCCEEEEeCCccccC
Confidence 344556788999999999999963
No 8
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=17.49 E-value=84 Score=24.86 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHcCc
Q 022792 272 ISAFQAFAICLSSFD 286 (292)
Q Consensus 272 lS~~QAFaialss~d 286 (292)
.+|.|.|+.||++|-
T Consensus 46 ~nP~eLllaala~C~ 60 (143)
T 2ql8_A 46 TNPEQLLGLSLSTCL 60 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998863
No 9
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=15.94 E-value=2e+02 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=18.8
Q ss_pred eEEEEEeeeCCCeEEEEccCCCC
Q 022792 251 NVILQFGKVGKDVFTMDYQYPIS 273 (292)
Q Consensus 251 ~~vlqfGk~~~~~f~lD~~~PlS 273 (292)
.+....=+++++.-++||.|||.
T Consensus 109 ~~~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 109 TIQAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEEEECCCEEEEECCCcCC
Confidence 34555677899999999999995
No 10
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=14.55 E-value=1.1e+02 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHcCc
Q 022792 272 ISAFQAFAICLSSFD 286 (292)
Q Consensus 272 lS~~QAFaialss~d 286 (292)
.+|.|.|+.||++|-
T Consensus 42 ~nP~eLllaala~C~ 56 (136)
T 2bjo_A 42 TNPEQLFAAGYAACF 56 (136)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999998763
Done!