Query 022795
Match_columns 292
No_of_seqs 265 out of 964
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 99.8 1.2E-19 4E-24 188.8 19.1 166 28-205 64-235 (802)
2 1xhb_A Polypeptide N-acetylgal 98.4 3.8E-07 1.3E-11 87.9 7.9 84 102-205 25-111 (472)
3 1qg8_A Protein (spore coat pol 98.4 1.7E-07 5.8E-12 81.8 4.0 47 106-158 1-47 (255)
4 3bcv_A Putative glycosyltransf 98.4 6.4E-07 2.2E-11 77.2 7.0 52 104-161 3-54 (240)
5 2z86_A Chondroitin synthase; G 98.4 3E-07 1E-11 91.5 5.7 81 104-205 91-171 (625)
6 2d7i_A Polypeptide N-acetylgal 98.2 1.7E-06 5.9E-11 86.3 6.6 55 103-160 109-164 (570)
7 3ckj_A Putative uncharacterize 98.1 3.6E-06 1.2E-10 77.9 5.6 52 104-160 46-97 (329)
8 2ffu_A Ppgalnact-2, polypeptid 97.9 1.3E-05 4.6E-10 78.0 6.3 52 102-156 62-113 (501)
9 3l7i_A Teichoic acid biosynthe 97.7 4.2E-06 1.4E-10 85.5 0.0 50 106-161 2-51 (729)
10 2z86_A Chondroitin synthase; G 97.6 9.5E-05 3.3E-09 73.5 7.3 52 104-161 373-424 (625)
11 3f1y_A Mannosyl-3-phosphoglyce 97.5 5.3E-05 1.8E-09 72.6 4.7 52 105-161 93-146 (387)
12 4fix_A UDP-galactofuranosyl tr 96.7 0.00057 1.9E-08 69.8 2.5 46 105-154 179-225 (657)
13 2fy7_A Beta-1,4-galactosyltran 95.4 0.0099 3.4E-07 54.5 3.7 42 105-152 64-108 (287)
14 1fo8_A Alpha-1,3-mannosyl-glyc 95.3 0.011 3.9E-07 55.8 4.0 44 105-153 1-44 (343)
15 2wvl_A Mannosyl-3-phosphoglyce 95.2 0.029 9.9E-07 53.9 6.5 43 105-156 52-94 (391)
16 2bo4_A Mannosylglycerate synth 95.1 0.022 7.6E-07 54.8 5.5 47 110-163 4-50 (397)
17 2zu9_A Mannosyl-3-phosphoglyce 94.9 0.046 1.6E-06 52.8 6.9 41 106-155 51-91 (394)
18 2nxv_A ATP synthase subunits r 93.9 0.096 3.3E-06 46.0 6.3 44 104-153 14-58 (249)
19 2l9u_A Receptor tyrosine-prote 25.7 56 0.0019 20.9 2.7 10 40-49 24-33 (40)
20 3tzt_A Glycosyl transferase fa 21.8 1.4E+02 0.0047 26.3 5.7 59 107-179 5-63 (276)
21 2x78_A Integrase; viral protei 21.4 3.1E+02 0.011 21.7 8.8 53 120-192 52-104 (200)
22 1c6v_A Protein (SIV integrase) 20.5 1.4E+02 0.0049 22.6 5.0 45 120-179 43-87 (164)
23 3l3u_A POL polyprotein; DNA in 20.1 1.6E+02 0.0055 22.6 5.3 55 120-194 43-97 (163)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.83 E-value=1.2e-19 Score=188.76 Aligned_cols=166 Identities=23% Similarity=0.319 Sum_probs=134.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 022795 28 INRSLVLLHFT-SLAFLVYYRVSYFFQVSNARAAPLLPWLLVFAAELLLSFQWLLGIAYRWRPISRTVFPERLPEADQLP 106 (292)
Q Consensus 28 ~~R~~~~~~~~-~l~~yl~wR~~~tl~~~~~~~~~~~~wl~l~~aE~~~~~~~ll~~~~~~~pv~r~~~~~~l~~~~~lP 106 (292)
+.|++.+++++ +.+.|++||++.+++... .+.+.++|++++++|+++.+.|+++++..++|..|...++. .++++|
T Consensus 64 ~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~-~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~P 140 (802)
T 4hg6_A 64 VPRFLLLSAASMLVMRYWFWRLFETLPPPA-LDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--QPEELP 140 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC--CTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC--CccCCC
Confidence 44555444444 457899999999997532 34567888899999999999999999999999888765542 246789
Q ss_pred ceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHH-----HHHHHHHHhhchHHHHHHhCCCCC
Q 022795 107 GIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLL-----GMREAWKFARSWLPFCKRFGIKTI 181 (292)
Q Consensus 107 ~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~-----~l~ea~~fa~~W~pfc~k~gv~~R 181 (292)
.|+|+||||| |++.++.+|+.|+++++||.++++|+|+|||++|.|.+ ...+..+-......+|+++++.
T Consensus 141 ~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~-- 215 (802)
T 4hg6_A 141 TVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV-- 215 (802)
T ss_dssp CEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE--
T ss_pred cEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE--
Confidence 9999999999 99889999999999999999999999999999998853 2333333233455899999999
Q ss_pred CCccceeCCCCCCCCCChhhhHHH
Q 022795 182 CPEAYFSDPENGDGDSGNAEFIVE 205 (292)
Q Consensus 182 ~P~~Yf~r~~~~~~kagn~n~a~~ 205 (292)
|+.++.+.+.|+|++|.+.+
T Consensus 216 ----~i~~~~~~~GKa~alN~gl~ 235 (802)
T 4hg6_A 216 ----YSTRERNEHAKAGNMSAALE 235 (802)
T ss_dssp ----EEECSSCCSHHHHHHHHHHH
T ss_pred ----EEEecCCCCcchHHHHHHHH
Confidence 99999888889999998776
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.42 E-value=3.8e-07 Score=87.90 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=62.5
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcc-cHHHHHHHHHHhhchHHHHHHhC--C
Q 022795 102 ADQLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASI-TLLGMREAWKFARSWLPFCKRFG--I 178 (292)
Q Consensus 102 ~~~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~-T~~~l~ea~~fa~~W~pfc~k~g--v 178 (292)
+.++|.|+|+||+|| |+.+.+.+||.|+++..||....+|+|+|||+++. |.+.+.+ +++++. |
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~----------~~~~~~~~v 91 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES----------YVKKLKVPV 91 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH----------HHHSSSSCE
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH----------HHHHCCCcE
Confidence 356899999999999 77789999999999999996557999999999984 6665543 334443 5
Q ss_pred CCCCCccceeCCCCCCCCCChhhhHHH
Q 022795 179 KTICPEAYFSDPENGDGDSGNAEFIVE 205 (292)
Q Consensus 179 ~~R~P~~Yf~r~~~~~~kagn~n~a~~ 205 (292)
. ++..+.|.+ +++..|.+.+
T Consensus 92 ~------vi~~~~n~G-~~~a~N~g~~ 111 (472)
T 1xhb_A 92 H------VIRMEQRSG-LIRARLKGAA 111 (472)
T ss_dssp E------EEECSSCCC-HHHHHHHHHH
T ss_pred E------EEECCCCCC-hHHHHHHHHH
Confidence 5 887766544 3344454443
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=98.38 E-value=1.7e-07 Score=81.76 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=41.8
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHH
Q 022795 106 PGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLG 158 (292)
Q Consensus 106 P~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~ 158 (292)
|.|+|+||||| ++ ..+.+||.|+++.+|| .++|+|+|||++|.|.+.
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~ 47 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNV 47 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHH
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHH
Confidence 78999999999 55 7999999999999999 799999999999955443
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.36 E-value=6.4e-07 Score=77.17 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHH
Q 022795 104 QLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMRE 161 (292)
Q Consensus 104 ~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~e 161 (292)
..|.|+|+||||| ++ ..+.++|.|+++.+|| .++|+|+|||++|.|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~ 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH
Confidence 3589999999999 55 7899999999999998 799999999999977665543
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.36 E-value=3e-07 Score=91.51 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=62.8
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHHHHhhchHHHHHHhCCCCCCC
Q 022795 104 QLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICP 183 (292)
Q Consensus 104 ~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~~fa~~W~pfc~k~gv~~R~P 183 (292)
..|.|+|+||||| |+ +.+.+|+.++++.+||. ..+|+|+|||+++.|.+.+. .++++.++.
T Consensus 91 ~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~----------~~~~~~~i~---- 151 (625)
T 2z86_A 91 IIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVR----------EFESLLNIK---- 151 (625)
T ss_dssp CCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHH----------TTTTTSCEE----
T ss_pred cCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHH----------HhhhcCCeE----
Confidence 4589999999998 65 89999999999999886 79999999999995543332 233444566
Q ss_pred ccceeCCCCCCCCCChhhhHHH
Q 022795 184 EAYFSDPENGDGDSGNAEFIVE 205 (292)
Q Consensus 184 ~~Yf~r~~~~~~kagn~n~a~~ 205 (292)
|+..+++.+.++++.|.+.+
T Consensus 152 --~i~~~~~~~g~~~a~N~g~~ 171 (625)
T 2z86_A 152 --YVRQKDYGYQLCAVRNLGLR 171 (625)
T ss_dssp --EEEECCCSCCHHHHHHHHHH
T ss_pred --EEEeCCCCcchhHHHHHHHH
Confidence 88877665566777887766
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.18 E-value=1.7e-06 Score=86.31 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=47.3
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCccc-HHHHH
Q 022795 103 DQLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASIT-LLGMR 160 (292)
Q Consensus 103 ~~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T-~~~l~ 160 (292)
+.+|.|+|+||||| |+.+.+.+||.|+++..||...++|+|+|||+++.| .+.+.
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~ 164 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH
Confidence 56899999999999 777899999999999999954469999999999988 44443
No 7
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.06 E-value=3.6e-06 Score=77.88 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=44.3
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHH
Q 022795 104 QLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMR 160 (292)
Q Consensus 104 ~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ 160 (292)
.-|.|+|+||||| |+ ..+..+|.|+++..||. ..+|+|+|||++|.|.+.+.
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~ 97 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAV 97 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHH
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHH
Confidence 3589999999999 66 68999999999999983 58999999999997655443
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=97.88 E-value=1.3e-05 Score=77.96 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccH
Q 022795 102 ADQLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITL 156 (292)
Q Consensus 102 ~~~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~ 156 (292)
+.++|.|+|+||||| |+...+.+||.|+++..||...++|+|+|||+++.|.
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~ 113 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPED 113 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHH
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHH
Confidence 356899999999999 8755999999999999998545699999999999764
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.73 E-value=4.2e-06 Score=85.50 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHH
Q 022795 106 PGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMRE 161 (292)
Q Consensus 106 P~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~e 161 (292)
|.|+|+||||| ++ ..+.+||.|+++.+|| .++|+|+|||++|.|.+.+.+
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~ 51 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE 51 (729)
T ss_dssp --------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH
Confidence 78999999999 55 7999999999999999 799999999999977666554
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.59 E-value=9.5e-05 Score=73.47 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHH
Q 022795 104 QLPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMRE 161 (292)
Q Consensus 104 ~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~e 161 (292)
..|.|+|+||||| ++ ..+.+||.|+++.+|| .++|+|+|||++|.|.+.+.+
T Consensus 373 ~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~ 424 (625)
T 2z86_A 373 RVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE 424 (625)
T ss_dssp SSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH
T ss_pred cCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH
Confidence 3689999999999 54 7899999999999998 799999999999977766554
No 11
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.55 E-value=5.3e-05 Score=72.62 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=42.1
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHhc--CCCCCCCcEEEEEcCCCCcccHHHHHH
Q 022795 105 LPGIDVFICTADPTKEPTVEVMNTVLSAMA--LDYPPEKLHVYLSDDGGASITLLGMRE 161 (292)
Q Consensus 105 lP~VDVfI~Tynp~~Ep~~vv~~Tvls~la--lDYP~~kl~VyVlDDG~s~~T~~~l~e 161 (292)
.|.|+|+||||| |. +.+..+|.++.+ .+||. ..+|+|+|||++|.|.+.+.+
T Consensus 93 ~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~i~~~ 146 (387)
T 3f1y_A 93 GLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAGVAAS 146 (387)
T ss_dssp TCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHHHHHH
T ss_pred CCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHHHHHH
Confidence 589999999999 65 688889988877 36764 479999999999977655443
No 12
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=96.70 E-value=0.00057 Score=69.77 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=39.8
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEEcCCCCcc
Q 022795 105 LPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKL-HVYLSDDGGASI 154 (292)
Q Consensus 105 lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl-~VyVlDDG~s~~ 154 (292)
-|.|+|+||||| ++ +.+.++|.|+++..|+.+.. +|+|+|||++|.
T Consensus 179 ~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~ 225 (657)
T 4fix_A 179 TANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKV 225 (657)
T ss_dssp CCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCG
T ss_pred CCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCc
Confidence 589999999999 54 79999999999999865444 999999999873
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=95.36 E-value=0.0099 Score=54.53 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHh---cCCCCCCCcEEEEEcCCCC
Q 022795 105 LPGIDVFICTADPTKEPTVEVMNTVLSAM---ALDYPPEKLHVYLSDDGGA 152 (292)
Q Consensus 105 lP~VDVfI~Tynp~~Ep~~vv~~Tvls~l---alDYP~~kl~VyVlDDG~s 152 (292)
.|.|.|+||||| ++ +.+..+|.|++ +..|+ .++|+|+||+..
T Consensus 64 ~~~VSIIIP~yN---~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdds~d 108 (287)
T 2fy7_A 64 PHKVAIIIPFRN---RQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQAGD 108 (287)
T ss_dssp SCEEEEEEEESS---CH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEECSS
T ss_pred CCcEEEEEeeCC---CH-HHHHHHHHHHHHHHHHhcC--CceEEEEEeCCC
Confidence 589999999998 65 89999999998 57787 799999999554
No 14
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.29 E-value=0.011 Score=55.82 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCc
Q 022795 105 LPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGAS 153 (292)
Q Consensus 105 lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~ 153 (292)
++.+-|+|+||| -| + +.+++.++++...+.+...|+|+|||+.+
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 456889999998 55 7 99999999999977778899999999986
No 15
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=95.21 E-value=0.029 Score=53.88 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccH
Q 022795 105 LPGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITL 156 (292)
Q Consensus 105 lP~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~ 156 (292)
+..+.|+||+|| |+. +++.++++.-|. ...|+|.|||+.|.|.
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRFQ 94 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCChH
Confidence 578999999999 884 356777777665 6899999999998764
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=95.12 E-value=0.022 Score=54.77 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=30.3
Q ss_pred EEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHH
Q 022795 110 VFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAW 163 (292)
Q Consensus 110 VfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~ 163 (292)
|+||++| |...-+...+..+. .+| ..+|+|+||||+|-|.+.+.+.+
T Consensus 4 VIiP~~e---E~I~~vl~~l~~~~--~~~--~~EIIVVDDGStD~T~eia~~la 50 (397)
T 2bo4_A 4 VVFPFKH---EHPEVLLHNVRVAA--AHP--RVHEVLCIGYERDQTYEAVERAA 50 (397)
T ss_dssp EEEECCS---SCHHHHHHHHHHHH--HST--TCCEEEEEESSCCHHHHHHHHHH
T ss_pred EEEeCCc---cCHHHHHHHHHHhc--cCC--CeEEEEEECcCCccHHHHHHHhh
Confidence 4566554 55444444443333 245 57899999999998888877543
No 17
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=94.86 E-value=0.046 Score=52.76 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=29.7
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCccc
Q 022795 106 PGIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASIT 155 (292)
Q Consensus 106 P~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T 155 (292)
..|.|+||+|| |+.. +..++++.+..+ ..|+|.|||++|-|
T Consensus 51 ~~iSVVIP~yN---EE~~-lI~~vL~~i~~~-----~eIIvVDDgSrD~t 91 (394)
T 2zu9_A 51 GKMAVIVPMKN---EKLH-LVDGVLKAIPHK-----CPIIIVSNSKREGP 91 (394)
T ss_dssp TTEEEEEEESS---CCHH-HHHHHHHHSCTT-----SCEEEEECCCCSSS
T ss_pred CCEEEEEecCc---ccHH-HHHHHHHcCCCC-----cEEEEEECcCcccc
Confidence 47999999999 8843 445555544322 46999999997766
No 18
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.88 E-value=0.096 Score=45.99 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=33.4
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHhc-CCCCCCCcEEEEEcCCCCc
Q 022795 104 QLPGIDVFICTADPTKEPTVEVMNTVLSAMA-LDYPPEKLHVYLSDDGGAS 153 (292)
Q Consensus 104 ~lP~VDVfI~Tynp~~Ep~~vv~~Tvls~la-lDYP~~kl~VyVlDDG~s~ 153 (292)
..|.|.| ||+|| + .+.+.+++.|+.. +..+.. .+|+|+|+|+++
T Consensus 14 ~~~~iSI-I~~yN---~-~~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d 58 (249)
T 2nxv_A 14 STLMFSV-CSLVR---D-QAKYDRLLESFERFGFTPDK-AEFLAADNREGN 58 (249)
T ss_dssp CCCSEEE-EEEES---C-HHHHHHHHHHHHHTTCCTTT-EEEEEEECTTSC
T ss_pred CcceEEE-EEeeC---C-HHHHHHHHHHHHHhccCCCc-EEEEEEECCCCC
Confidence 3577887 67898 4 4799999997763 433433 899999999988
No 19
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=25.74 E-value=56 Score=20.86 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=6.8
Q ss_pred HHHHHHHHhh
Q 022795 40 LAFLVYYRVS 49 (292)
Q Consensus 40 l~~yl~wR~~ 49 (292)
..-||+||-.
T Consensus 24 g~tflywrgr 33 (40)
T 2l9u_A 24 GGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHH
T ss_pred CceeEEEccc
Confidence 3458888864
No 20
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=21.78 E-value=1.4e+02 Score=26.33 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=36.1
Q ss_pred ceEEEEecCCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHHHHhhchHHHHHHhCCC
Q 022795 107 GIDVFICTADPTKEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIK 179 (292)
Q Consensus 107 ~VDVfI~Tynp~~Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~~fa~~W~pfc~k~gv~ 179 (292)
.+.|++++=+ .=..-+.-++.|++.-. +.+.+.+||++||-++...+.|. .+++++|++
T Consensus 5 ~i~I~~~~d~---~Y~~~~~v~i~Sl~~~~-~~~~~~~~il~~~is~~~~~~L~----------~~~~~~~~~ 63 (276)
T 3tzt_A 5 ADALLLTLDE---NYIPQMKVLMTSIYINN-PGRIFDVYLIHSRISEDKLKDLG----------EDLKKFSYT 63 (276)
T ss_dssp CEEEEEECCG---GGHHHHHHHHHHHHHHS-TTCCEEEEEEESCCCHHHHHHHH----------HHHHTTTCE
T ss_pred eEEEEEEeCH---hHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCHHHHHHHH----------HHHHHcCCE
Confidence 4778877654 33445555666655432 23579999999998874333333 456667764
No 21
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=21.37 E-value=3.1e+02 Score=21.75 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHHHHhhchHHHHHHhCCCCCCCccceeCCCC
Q 022795 120 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPEN 192 (292)
Q Consensus 120 Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~~fa~~W~pfc~k~gv~~R~P~~Yf~r~~~ 192 (292)
.....+...+..++....| .++.+|-|+.= .++.|..+|+++||.. .++++.+
T Consensus 52 ~~~~~~~~~l~~~~~~g~p----~~i~sDnG~~f-----------~s~~~~~~~~~~gi~~-----~~~~p~~ 104 (200)
T 2x78_A 52 PSTSATVKSLNVLTSIAIP----RVIHSDQGAAF-----------TSSTFAEWAKERGIHL-----EFSTPYH 104 (200)
T ss_dssp SCHHHHHHHHHHHTTTCCC----SEEEECSCHHH-----------HSHHHHHHHHHHTCEE-----EECC---
T ss_pred CCHHHHHHHHHHHHHhCCC----cEEEecCCcce-----------ehHHHHHHHHHcCceE-----eECCCCC
Confidence 4456677777766655445 47777776531 1224679999999983 5555544
No 22
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=20.48 E-value=1.4e+02 Score=22.59 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHHHHhhchHHHHHHhCCC
Q 022795 120 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIK 179 (292)
Q Consensus 120 Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~~fa~~W~pfc~k~gv~ 179 (292)
+....+...++.+. ..|| ..++++|-|+.=. ++.+..+|+++||.
T Consensus 43 ~~~~~~~~~~~~~~-~~~~---~~~i~sDnG~~f~-----------s~~~~~~~~~~gi~ 87 (164)
T 1c6v_A 43 ETGRQTALFLLKLA-GRWP---ITHLHTDNGANFA-----------SQEVKMVAWWAGIE 87 (164)
T ss_dssp CSHHHHHHHHHHHH-TTSC---CCEEECCCCSSTT-----------SSHHHHHHHHHTCE
T ss_pred CchHHHHHHHHHHH-HhcC---CCEEEeCCchhhh-----------hHHHHHHHHHcCCe
Confidence 44455666666644 4556 3678888876430 23366899999998
No 23
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=20.09 E-value=1.6e+02 Score=22.65 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEEcCCCCcccHHHHHHHHHHhhchHHHHHHhCCCCCCCccceeCCCCCC
Q 022795 120 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGD 194 (292)
Q Consensus 120 Ep~~vv~~Tvls~lalDYP~~kl~VyVlDDG~s~~T~~~l~ea~~fa~~W~pfc~k~gv~~R~P~~Yf~r~~~~~ 194 (292)
+....+...+..+. ..||. .++.+|-|+.= + ++.|..+|+++||.. .++++.++.
T Consensus 43 ~~~~~~~~~l~~~~-~~~~~---~~i~sD~G~~f-~----------s~~~~~~~~~~gi~~-----~~~~p~~p~ 97 (163)
T 3l3u_A 43 ETGQETAYFLLKLA-GRWPV---KTVHTDNGSNF-T----------STTVKAACDWAGIKQ-----EDGIPYNPQ 97 (163)
T ss_dssp CCHHHHHHHHHHHH-HHSCC---CEEEECCCGGG-G----------SHHHHHHHHHHTCEE-----EETCCCCCC
T ss_pred CcHHHHHHHHHHHH-HHcCC---cEEeecChHhh-h----------hHHHHHHHHHCCcee-----eeCCCCCcc
Confidence 55666777766643 34663 57777777643 1 223668999999983 566665433
Done!