Query 022798
Match_columns 292
No_of_seqs 200 out of 1009
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pp5_A BRK1, protein brick1; t 31.8 1.5E+02 0.005 21.5 6.4 40 70-109 17-56 (73)
2 3p8c_E Probable protein brick1 30.6 1.5E+02 0.0053 21.4 6.4 40 70-109 17-56 (75)
3 2a3d_A Protein (de novo three- 24.5 84 0.0029 21.8 3.7 40 94-133 5-44 (73)
4 1deq_A Fibrinogen (alpha chain 23.4 2.2E+02 0.0075 26.9 7.5 52 81-135 103-154 (390)
5 3twe_A Alpha4H; unknown functi 19.2 1.3E+02 0.0046 17.0 3.2 20 126-153 5-24 (27)
6 2q5z_A MAZG, hypothetical prot 18.7 1.2E+02 0.004 23.2 4.0 64 94-157 45-112 (114)
7 2rqp_A Heterochromatin protein 18.3 60 0.0021 23.8 2.1 17 248-265 17-33 (88)
8 3zyl_A Phosphatidylinositol-bi 18.2 3.2E+02 0.011 24.2 7.3 63 94-157 169-251 (271)
9 2bbh_A Divalent cation transpo 18.1 3.9E+02 0.013 22.6 7.8 65 83-153 178-242 (269)
10 2l5g_B Putative uncharacterize 18.0 2.1E+02 0.0072 18.4 4.6 29 74-106 10-38 (42)
No 1
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.77 E-value=1.5e+02 Score=21.47 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022798 70 EEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVAN 109 (292)
Q Consensus 70 ~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~ 109 (292)
...+|++.+..-|.++..|...=..-+..|+..|..++..
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~ 56 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTI 56 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998888888888887777654
No 2
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=30.61 E-value=1.5e+02 Score=21.44 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022798 70 EEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVAN 109 (292)
Q Consensus 70 ~e~~F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~i~~ 109 (292)
...+|++.++.-|.++..|...=..-+..|+..|..++..
T Consensus 17 ~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~ 56 (75)
T 3p8c_E 17 ANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTA 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998888888888888777654
No 3
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=24.55 E-value=84 Score=21.79 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Q 022798 94 EEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVL 133 (292)
Q Consensus 94 ~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~ 133 (292)
.++..|+..+..++..+..+..++....+.+..|-.++.-
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqa 44 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQA 44 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655544444555555555555555443
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.40 E-value=2.2e+02 Score=26.90 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhh
Q 022798 81 EMDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLE 135 (292)
Q Consensus 81 EL~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~ 135 (292)
+.+..+.-|.+-.++|..++..|+..|..-. ..+..|+..|.+++.+|..|+
T Consensus 103 q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~---~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 103 KANNNDNTFKQINEDLRSRIEILRRKVIEQV---QRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666664321 245556666666666666665
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=19.21 E-value=1.3e+02 Score=17.03 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHH
Q 022798 126 DLHGEMVLLENYSALNYTAGLVKILKKY 153 (292)
Q Consensus 126 el~~el~~L~~f~~LN~t~gf~KILKK~ 153 (292)
++|.++..|+ + -++|+-||.
T Consensus 5 elykeledlq-------e-rlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQ-------E-RLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHH-------H-HHHHHHHHH
T ss_pred HHHHHHHHHH-------H-HHHHHHHHh
Confidence 5566666665 3 566665553
No 6
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=18.75 E-value=1.2e+02 Score=23.16 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhccC--C--HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhc
Q 022798 94 EEYIIRLKELQDRVANAND--S--NEELIKIRKEIVDLHGEMVLLENYSALNYTAGLVKILKKYDKRT 157 (292)
Q Consensus 94 ~el~~rl~~L~~~i~~~~~--s--~~~~~~l~~~~~el~~el~~L~~f~~LN~t~gf~KILKK~DK~t 157 (292)
..+...+.+|...+..... + ......+...+-|+.--+..|.++..++-..++++.++|+.++.
T Consensus 45 ~kL~eE~gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~l~~LA~~lgiDle~al~~k~~K~~~Ry 112 (114)
T 2q5z_A 45 FKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTRELKEVLNKVKY 112 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3455555566555543210 0 01123578889999999999999999998878999999988764
No 7
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=18.31 E-value=60 Score=23.84 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCcccc
Q 022798 248 ISALRALKEIRSGSSTVS 265 (292)
Q Consensus 248 ~~al~~~~~~~~~sst~~ 265 (292)
+.|+.+++| |+|||...
T Consensus 17 ~eAI~~Lke-r~GsS~~A 33 (88)
T 2rqp_A 17 TEAIKACFQ-KSGASVVA 33 (88)
T ss_dssp HHHHHHHHH-HTCCCHHH
T ss_pred HHHHHHhcc-CCCcCHHH
Confidence 477788888 99999654
No 8
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=18.18 E-value=3.2e+02 Score=24.16 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhccC---------C---HHHHHHHHHHHHHHHHHHH-----HhhhHHHhhhhhhHH---HHHHHH
Q 022798 94 EEYIIRLKELQDRVANAND---------S---NEELIKIRKEIVDLHGEMV-----LLENYSALNYTAGLV---KILKKY 153 (292)
Q Consensus 94 ~el~~rl~~L~~~i~~~~~---------s---~~~~~~l~~~~~el~~el~-----~L~~f~~LN~t~gf~---KILKK~ 153 (292)
+++..++..||.++..+.+ + ...+.-+-++...+|..++ +|.+|-+|.+. .-. +|.|||
T Consensus 169 ~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~-da~~aleiykrf 247 (271)
T 3zyl_A 169 EKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKN-QCKEGLDIYKKF 247 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 3466677777877766532 1 1223334445555555444 56777777655 322 256666
Q ss_pred Hhhc
Q 022798 154 DKRT 157 (292)
Q Consensus 154 DK~t 157 (292)
.+.+
T Consensus 248 ~~Q~ 251 (271)
T 3zyl_A 248 LTRM 251 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 9
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=18.05 E-value=3.9e+02 Score=22.64 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHH
Q 022798 83 DKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTAGLVKILKKY 153 (292)
Q Consensus 83 ~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~f~~LN~t~gf~KILKK~ 153 (292)
+.+.+-|..-.+++..++++|++++-.. . .......+..+-+++..|+++..=+.. .+.++.+..
T Consensus 178 d~ivd~y~~~l~~i~~~id~lE~~v~~~--~---~~~~l~~l~~lrr~l~~lrr~l~p~~~-vl~~L~~~~ 242 (269)
T 2bbh_A 178 DALVDDYFVLLEKIDDEIDVLEEEVLER--P---EKETVQRTHQLKRNLVELRKTIWPLRE-VLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 4455555555666667777776654321 0 122345678888889999999999999 999998753
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=18.00 E-value=2.1e+02 Score=18.44 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022798 74 FISLLEDEMDKFNSFFVEKEEEYIIRLKELQDR 106 (292)
Q Consensus 74 F~~~L~~EL~KVn~Fy~~ke~el~~rl~~L~~~ 106 (292)
=+..++.||+|+. ++..++..++.+|++.
T Consensus 10 kI~kVdrEI~Kte----~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVE----QQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 3466778888864 3666677777776654
Done!