Query 022798
Match_columns 292
No_of_seqs 200 out of 1009
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 11:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbha1 d.328.1.1 (A:13-244) M 23.5 93 0.0068 24.0 6.9 66 82-153 162-227 (232)
2 d1skye1 a.69.1.1 (E:357-470) F 20.4 68 0.005 23.3 4.8 33 163-195 47-89 (114)
3 d1ghca_ a.4.5.13 (A:) Histone 17.6 13 0.00095 25.1 0.1 21 248-269 11-31 (75)
4 d1hsta_ a.4.5.13 (A:) Histone 14.2 8.6 0.00063 26.0 -1.7 17 248-265 10-26 (74)
5 d1sfka_ a.190.1.1 (A:) Flavivi 13.2 36 0.0026 22.9 1.4 28 131-159 39-66 (73)
6 d1ussa_ a.4.5.13 (A:) Histone 12.3 17 0.0012 25.3 -0.5 18 248-266 15-32 (88)
7 d1fx0b1 a.69.1.1 (B:378-485) F 12.2 79 0.0058 22.7 3.2 31 163-193 47-87 (108)
8 d1wlza1 a.39.1.7 (A:229-311) D 11.2 1.8E+02 0.013 18.2 4.9 48 133-181 10-59 (83)
9 d1r6ra_ a.190.1.1 (A:) Flavivi 9.7 46 0.0034 22.8 1.0 27 132-159 44-70 (80)
10 d1usta_ a.4.5.13 (A:) Histone 9.1 19 0.0014 25.2 -1.3 18 248-266 14-31 (92)
No 1
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.49 E-value=93 Score=23.96 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHH
Q 022798 82 MDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTAGLVKILKKY 153 (292)
Q Consensus 82 L~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~f~~LN~t~gf~KILKK~ 153 (292)
++.+..-|..-.+++..++++|++.+-.. . -......+..+-+++..|+++..=+.. .+.++.+-.
T Consensus 162 ld~ivd~y~~~l~~l~~~id~lE~~v~~~--~---~~~~l~~i~~lrr~l~~lrr~l~p~re-vl~~L~r~~ 227 (232)
T d2bbha1 162 IDALVDDYFVLLEKIDDEIDVLEEEVLER--P---EKETVQRTHQLKRNLVELRKTIWPLRE-VLSSLYRDV 227 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC--C---cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC
Confidence 35566666666667777777776654321 1 122345677888888888888888888 888888643
No 2
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=20.40 E-value=68 Score=23.30 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCHH----------HHHHHHHHHHHHHHhhc
Q 022798 163 LPFIQRVLQQPFFTTD----------LIYRLVKQCEKMLDGLF 195 (292)
Q Consensus 163 ~~f~~~V~~qpF~~~~----------~l~~Lv~~~E~l~~~lF 195 (292)
..=+++.++||||... .|..-++.|+.+++.-+
T Consensus 47 ARklqrFLsQpF~vaE~fTG~~G~~V~l~dTi~g~~~Il~G~~ 89 (114)
T d1skye1 47 ARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKY 89 (114)
T ss_dssp HHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCCceeceeecCCCeeEeeHHHHHHHHHHHhCCCC
Confidence 3445677899999654 56778888888876543
No 3
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.60 E-value=13 Score=25.13 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCccccccCC
Q 022798 248 ISALRALKEIRSGSSTVSVFSL 269 (292)
Q Consensus 248 ~~al~~~~~~~~~sst~~~~s~ 269 (292)
+.|+.+|+| |+|||...+..-
T Consensus 11 ~eAI~al~e-r~GsS~~AI~ky 31 (75)
T d1ghca_ 11 TKAVSASKE-RKGLSLAALKKA 31 (75)
T ss_dssp HHHHHHCSS-SSCCTTSSGGGS
T ss_pred HHHHHHcCC-CCCcCHHHHHHH
Confidence 477888888 999998876543
No 4
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.25 E-value=8.6 Score=25.95 Aligned_cols=17 Identities=53% Similarity=0.585 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCcccc
Q 022798 248 ISALRALKEIRSGSSTVS 265 (292)
Q Consensus 248 ~~al~~~~~~~~~sst~~ 265 (292)
++|+.+|.| |+|||-..
T Consensus 10 ~eAI~al~e-r~GsS~~A 26 (74)
T d1hsta_ 10 AAAIRAEKS-RGGSSRQS 26 (74)
T ss_dssp HHHHHTCCC-SSCEEHHH
T ss_pred HHHHHHcCC-CCCcCHHH
Confidence 578888888 99998654
No 5
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=13.21 E-value=36 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHhhhHHHhhhhhhHHHHHHHHHhhcCC
Q 022798 131 MVLLENYSALNYTAGLVKILKKYDKRTGA 159 (292)
Q Consensus 131 l~~L~~f~~LN~t~gf~KILKK~DK~tg~ 159 (292)
..+|+.+..+|.. .-.|||+.|.|-.|.
T Consensus 39 ~~ll~RW~~v~K~-~A~k~L~~FKKeig~ 66 (73)
T d1sfka_ 39 RAVLDRWRSVNKQ-TAMKHLLSFKKELGT 66 (73)
T ss_dssp HHHHHHHTTSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHH-HHHHHHHHHHHHHHH
Confidence 3568899999999 999999999998765
No 6
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.34 E-value=17 Score=25.26 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCccccc
Q 022798 248 ISALRALKEIRSGSSTVSV 266 (292)
Q Consensus 248 ~~al~~~~~~~~~sst~~~ 266 (292)
+.|+.+|.| |+|||-..+
T Consensus 15 ~eAI~~L~e-r~GsS~~aI 32 (88)
T d1ussa_ 15 LKSMPQLND-GKGSSRIVL 32 (88)
T ss_dssp HHHHHHSCC-TTSBCHHHH
T ss_pred HHHHHHcCC-CCCcCHHHH
Confidence 588888888 999987553
No 7
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=12.21 E-value=79 Score=22.69 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCCCHH----------HHHHHHHHHHHHHHh
Q 022798 163 LPFIQRVLQQPFFTTD----------LIYRLVKQCEKMLDG 193 (292)
Q Consensus 163 ~~f~~~V~~qpF~~~~----------~l~~Lv~~~E~l~~~ 193 (292)
..-+++.+.||||... .|.+-+..|+.+++.
T Consensus 47 Arklq~FLtQpFfvae~fTg~~G~~V~l~dTi~g~~~IL~G 87 (108)
T d1fx0b1 47 ARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSG 87 (108)
T ss_dssp HHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTT
T ss_pred HHHHHHHhccccccceecCCCCcCEecHHHHHhhHHHHhCC
Confidence 3445677899998542 466666777776544
No 8
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.22 E-value=1.8e+02 Score=18.24 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=29.4
Q ss_pred HhhhHHHhhhhhhHHHHHHHHHhhcC-CcccHHHHHHhhc-CCCCCHHHHH
Q 022798 133 LLENYSALNYTAGLVKILKKYDKRTG-ALIRLPFIQRVLQ-QPFFTTDLIY 181 (292)
Q Consensus 133 ~L~~f~~LN~t~gf~KILKK~DK~tg-~~lr~~f~~~V~~-qpF~~~~~l~ 181 (292)
.|+....-+.. .+.++.+.||+.-. ...+..|..-+.. .+-.+...+.
T Consensus 10 ~l~~~i~~~~~-~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~ 59 (83)
T d1wlza1 10 RLHKAVTSHYH-AITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFD 59 (83)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHH
Confidence 45666666778 89999999998764 4445555544332 2234454443
No 9
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]}
Probab=9.66 E-value=46 Score=22.76 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=22.9
Q ss_pred HHhhhHHHhhhhhhHHHHHHHHHhhcCC
Q 022798 132 VLLENYSALNYTAGLVKILKKYDKRTGA 159 (292)
Q Consensus 132 ~~L~~f~~LN~t~gf~KILKK~DK~tg~ 159 (292)
.+++.+..+|.. .-.||||+|.|..|.
T Consensus 44 ~l~~rW~~v~k~-~aik~Lk~FKk~i~~ 70 (80)
T d1r6ra_ 44 GILKRWGTIKKS-KAINVLRGFRKEIGR 70 (80)
T ss_dssp HHHHHHTSSCSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH-HHHHHHHHHHHHHHH
Confidence 356788999999 999999999988765
No 10
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.11 E-value=19 Score=25.18 Aligned_cols=18 Identities=56% Similarity=0.711 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCccccc
Q 022798 248 ISALRALKEIRSGSSTVSV 266 (292)
Q Consensus 248 ~~al~~~~~~~~~sst~~~ 266 (292)
+.|+.+|+| |+|||...+
T Consensus 14 ~eAI~~l~e-r~GsS~~aI 31 (92)
T d1usta_ 14 IEGLTALKE-RKGSSRPAL 31 (92)
T ss_dssp HHHHTTTTT-TSCEEHHHH
T ss_pred HHHHHHcCC-CCCCCHHHH
Confidence 578888888 999987554
Done!