Query 022801
Match_columns 292
No_of_seqs 75 out of 77
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 11:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cl6_A PUUE allantoinase; URIC 55.3 2.5 8.4E-05 36.9 -0.0 39 245-283 261-300 (308)
2 3rxz_A Polysaccharide deacetyl 36.6 8.7 0.0003 33.1 0.5 43 243-285 242-285 (300)
3 3s6o_A Polysaccharide deacetyl 32.6 13 0.00045 33.0 0.9 41 243-283 267-308 (321)
4 2pqx_A Ribonuclease I; hydrola 26.8 33 0.0011 29.5 2.4 28 258-285 107-135 (245)
5 1ioo_A SF11-RNAse; SELF-incomp 26.4 31 0.0011 28.4 2.1 28 258-285 58-93 (196)
6 2kvc_A Putative uncharacterize 19.9 78 0.0027 25.4 3.1 28 248-275 71-98 (103)
7 3lup_A DEGV family protein; PS 18.6 62 0.0021 28.5 2.6 18 252-269 68-85 (285)
8 2co5_A Viral protein F93; vira 18.1 82 0.0028 23.9 2.8 20 249-268 40-59 (99)
9 1ucd_A Ribonuclease MC; alpha 17.8 28 0.00097 28.6 0.2 29 257-285 59-90 (190)
10 2jxf_A NS4B(40-69), genome pol 17.0 33 0.0011 22.6 0.3 11 276-286 7-17 (30)
No 1
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=55.31 E-value=2.5 Score=36.86 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=33.2
Q ss_pred cccccccChHHHHHHHHHHHhcc-cCCCCCccchhhhhhc
Q 022801 245 RIAGRKMSQGAFKKVLEKLAAEG-YNFANPIDLRTHWARH 283 (292)
Q Consensus 245 Ri~GRKMS~gaf~klL~rLa~eg-~~ls~piDLk~~WAkH 283 (292)
++.||.-...++.++|+.|+++| +-|....||-+||.++
T Consensus 261 ~~~g~~~~~~aL~~~l~~l~~~g~v~~~T~~eia~~~~~~ 300 (308)
T 3cl6_A 261 RLIGRPARLAALQRFIEYAKSHEQVWFTRRVDIARHWHAT 300 (308)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEecHHHHHHHHHHh
Confidence 44566666789999999999987 9999999999999864
No 2
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=36.57 E-value=8.7 Score=33.08 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=36.9
Q ss_pred CccccccccChHHHHHHHHHHHhc-ccCCCCCccchhhhhhcCC
Q 022801 243 GARIAGRKMSQGAFKKVLEKLAAE-GYNFANPIDLRTHWARHGT 285 (292)
Q Consensus 243 gaRi~GRKMS~gaf~klL~rLa~e-g~~ls~piDLk~~WAkHGT 285 (292)
|.++-|+..-..+|.++|+.+++. |+-|...-||-+||..++.
T Consensus 242 H~~~~g~p~~~~~l~~~l~~~~~~~~V~~~t~~eia~~~~~~~~ 285 (300)
T 3rxz_A 242 HPFLSGRPGRAAALREFIAEVCAMDDVWVAGMSQIAEHVRAQKL 285 (300)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCTTEEECCHHHHHHHHHHTCC
T ss_pred ChhhcCCHHHHHHHHHHHHHHHhCCCEEEEcHHHHHHHHHhhcC
Confidence 457777765578999999999998 7999999999999998874
No 3
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=32.57 E-value=13 Score=32.95 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=35.0
Q ss_pred CccccccccChHHHHHHHHHHHhc-ccCCCCCccchhhhhhc
Q 022801 243 GARIAGRKMSQGAFKKVLEKLAAE-GYNFANPIDLRTHWARH 283 (292)
Q Consensus 243 gaRi~GRKMS~gaf~klL~rLa~e-g~~ls~piDLk~~WAkH 283 (292)
|.++-|+..-..+|.++|+.+++. |.-|....|+-+||..+
T Consensus 267 H~~~~g~p~r~~~le~fL~~i~~~~~Vw~~t~~eia~~~~~~ 308 (321)
T 3s6o_A 267 HCRLLGRPGRFRALQRFLDHIERHDRVWVARRVEIARHWREH 308 (321)
T ss_dssp ETTTTTSHHHHHHHHHHHHHHHTCSSEEECCHHHHHHHHHHH
T ss_pred ChHHcCCHHHHHHHHHHHHHHHhCCCEEEEcHHHHHHHHHhh
Confidence 467778877778999999999877 89999999999999754
No 4
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=26.76 E-value=33 Score=29.46 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=15.7
Q ss_pred HHHHHHHhcccCCCCCccchhh-hhhcCC
Q 022801 258 KVLEKLAAEGYNFANPIDLRTH-WARHGT 285 (292)
Q Consensus 258 klL~rLa~eg~~ls~piDLk~~-WAkHGT 285 (292)
.++++|...=-|+.+...|-.| |.||||
T Consensus 107 ~l~~~L~~~WP~~~~~~~fw~hEW~KHGT 135 (245)
T 2pqx_A 107 ETAAKLSEVMPGAGGRSCLERYEYAKHGA 135 (245)
T ss_dssp HHHHHHHHHCTTSSTTTCHHHHHHHHHTG
T ss_pred HHHHHHHHhCCCCCCcchHHHHHhhhCCe
Confidence 4555555443344333445444 899998
No 5
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=26.37 E-value=31 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHHHHhcccCCCCC-------ccch-hhhhhcCC
Q 022801 258 KVLEKLAAEGYNFANP-------IDLR-THWARHGT 285 (292)
Q Consensus 258 klL~rLa~eg~~ls~p-------iDLk-~~WAkHGT 285 (292)
+|+.+|...=-||..+ .+|= .-|.||||
T Consensus 58 ~l~~~L~~~Wp~l~~~~~~~~~~~~fW~hEw~KHGT 93 (196)
T 1ioo_A 58 KMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGS 93 (196)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHCHHHHHHHHHTGG
T ss_pred HHHHHHhccCCCCCcccccccccchHHHhhCcCCcC
Confidence 6788887655566544 2333 34799998
No 6
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=19.86 E-value=78 Score=25.44 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=22.5
Q ss_pred ccccChHHHHHHHHHHHhcccCCCCCcc
Q 022801 248 GRKMSQGAFKKVLEKLAAEGYNFANPID 275 (292)
Q Consensus 248 GRKMS~gaf~klL~rLa~eg~~ls~piD 275 (292)
..-=|-....+|.+||++.|+.|..+.|
T Consensus 71 ~~~Ps~eDI~RV~arLaa~GWPl~~~~~ 98 (103)
T 2kvc_A 71 DELPSPEDVERVRARLAAQGWPLDDVRD 98 (103)
T ss_dssp SSCSCHHHHHHHHHHHGGGCCCSSCCCS
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCCc
Confidence 3344567788999999999999998876
No 7
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=18.55 E-value=62 Score=28.47 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHhcccC
Q 022801 252 SQGAFKKVLEKLAAEGYN 269 (292)
Q Consensus 252 S~gaf~klL~rLa~eg~~ 269 (292)
|-+.|.+++++|+.||||
T Consensus 68 s~~~~~~~f~~l~~~g~d 85 (285)
T 3lup_A 68 SLAELDDLLCQLEKEGYT 85 (285)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 789999999999999997
No 8
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=18.08 E-value=82 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.7
Q ss_pred cccChHHHHHHHHHHHhccc
Q 022801 249 RKMSQGAFKKVLEKLAAEGY 268 (292)
Q Consensus 249 RKMS~gaf~klL~rLa~eg~ 268 (292)
-++|.|....+|.||..+|+
T Consensus 40 ~~is~GtlYp~L~rLe~~Gl 59 (99)
T 2co5_A 40 IDISDGVLYPLIDSLIDDKI 59 (99)
T ss_dssp CBCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcHHHHHHHHHHCCC
Confidence 47999999999999999998
No 9
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=17.75 E-value=28 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=16.7
Q ss_pred HHHHHHHHhcccCCC--CCccc-hhhhhhcCC
Q 022801 257 KKVLEKLAAEGYNFA--NPIDL-RTHWARHGT 285 (292)
Q Consensus 257 ~klL~rLa~eg~~ls--~piDL-k~~WAkHGT 285 (292)
.+++.+|...=-||. +-.+| +.-|.||||
T Consensus 59 ~~l~~~L~~~Wp~l~~~~~~~fW~hEw~KHGT 90 (190)
T 1ucd_A 59 SHLQSQLNTLWPNVLRANNQQFWSHEWTKHGT 90 (190)
T ss_dssp GGGHHHHHHHSCCSSSSCHHHHHHHHHHHTGG
T ss_pred chhhHHHHhcCCCcCCCCCCchHHhccccCcE
Confidence 456777775434443 12233 334799998
No 10
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=16.96 E-value=33 Score=22.59 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.1
Q ss_pred chhhhhhcCCc
Q 022801 276 LRTHWARHGTN 286 (292)
Q Consensus 276 Lk~~WAkHGTN 286 (292)
|..||+||==|
T Consensus 7 le~fW~khMwN 17 (30)
T 2jxf_A 7 LEVFWAKHMWN 17 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56899999443
Done!