Query 022801
Match_columns 292
No_of_seqs 75 out of 77
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 11:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sgla_ d.124.1.1 (A:) Trichom 38.1 6.9 0.0005 30.8 2.1 10 276-285 95-104 (206)
2 d1qwda_ b.60.1.1 (A:) Outer me 21.3 26 0.0019 25.0 2.5 29 244-272 129-159 (167)
3 d2v9va2 a.4.5.35 (A:438-510) C 21.0 24 0.0018 23.3 2.1 24 245-268 34-57 (73)
4 d1ucda_ d.124.1.1 (A:) Ribonuc 18.7 12 0.0009 28.9 0.2 28 258-285 60-90 (190)
5 d1v6ga1 g.39.1.3 (A:1-41) Acti 18.4 15 0.0011 23.9 0.5 14 277-290 8-26 (41)
6 d1bola_ d.124.1.1 (A:) Ribonuc 18.1 13 0.00094 29.4 0.2 9 278-286 104-112 (222)
7 d1x6aa1 g.39.1.3 (A:8-41) Lim 18.1 9.9 0.00072 24.1 -0.4 9 277-285 1-9 (34)
8 d1mgpa_ c.119.1.1 (A:) Hypothe 18.1 31 0.0023 27.9 2.6 19 251-269 67-85 (285)
9 d1wgra_ d.15.1.5 (A:) Growth f 17.5 13 0.00098 26.3 0.1 22 269-290 68-89 (100)
10 d1iooa_ d.124.1.1 (A:) Gemetop 17.2 27 0.0019 27.0 1.9 28 258-285 58-93 (196)
No 1
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]}
Probab=38.08 E-value=6.9 Score=30.78 Aligned_cols=10 Identities=30% Similarity=0.714 Sum_probs=8.0
Q ss_pred chhhhhhcCC
Q 022801 276 LRTHWARHGT 285 (292)
Q Consensus 276 Lk~~WAkHGT 285 (292)
.+.-|.||||
T Consensus 95 w~hEW~KHGT 104 (206)
T d1sgla_ 95 WGQQYEKHGT 104 (206)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHhccc
Confidence 3566999998
No 2
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]}
Probab=21.26 E-value=26 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=23.3
Q ss_pred cccccc--ccChHHHHHHHHHHHhcccCCCC
Q 022801 244 ARIAGR--KMSQGAFKKVLEKLAAEGYNFAN 272 (292)
Q Consensus 244 aRi~GR--KMS~gaf~klL~rLa~eg~~ls~ 272 (292)
+-|=+| .|+.....+++++|.+.|||++.
T Consensus 129 ~wIlsR~~~l~~~~~~~~~~~~~~~G~d~s~ 159 (167)
T d1qwda_ 129 LWILSRTPTISDEVKQEMLAVATREGFDVSK 159 (167)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHHHTTCCGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCHHH
Confidence 344444 58999999999999999999764
No 3
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=20.99 E-value=24 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred cccccccChHHHHHHHHHHHhccc
Q 022801 245 RIAGRKMSQGAFKKVLEKLAAEGY 268 (292)
Q Consensus 245 Ri~GRKMS~gaf~klL~rLa~eg~ 268 (292)
+..+.+++...|..||+.|.++|.
T Consensus 34 ~~l~~~~~~~~f~~lL~~l~~~g~ 57 (73)
T d2v9va2 34 SRYFSRLPARVYQALLEEWSREGR 57 (73)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHTTS
T ss_pred HHhcccCCHHHHHHHHHHHHHCCC
Confidence 345668999999999999999985
No 4
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]}
Probab=18.73 E-value=12 Score=28.87 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHHHHHHhcccCCCC--Cccc-hhhhhhcCC
Q 022801 258 KVLEKLAAEGYNFAN--PIDL-RTHWARHGT 285 (292)
Q Consensus 258 klL~rLa~eg~~ls~--piDL-k~~WAkHGT 285 (292)
.|+.+|...=-||.. ..+| +.-|.||||
T Consensus 60 ~l~~~L~~~wp~l~~~~~~~~w~hEW~KHGt 90 (190)
T d1ucda_ 60 HLQSQLNTLWPNVLRANNQQFWSHEWTKHGT 90 (190)
T ss_dssp GGHHHHHHHSCCSSSSCHHHHHHHHHHHTGG
T ss_pred hHHHHHHHHhhhhccccChHHHHHHHHhCcc
Confidence 356666554344432 2345 445999998
No 5
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.44 E-value=15 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.8
Q ss_pred hhhhhhcCC-----cceee
Q 022801 277 RTHWARHGT-----NKFVT 290 (292)
Q Consensus 277 k~~WAkHGT-----Nk~vt 290 (292)
+|||++.|| ++|||
T Consensus 8 ~DYq~~fG~~C~~C~~~It 26 (41)
T d1v6ga1 8 LDYQRLYGTRCFSCDQFIE 26 (41)
T ss_dssp SCGGGSCCCBCTTTCCBCC
T ss_pred ccHHHHhCcccccccCEee
Confidence 579999987 56665
No 6
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]}
Probab=18.13 E-value=13 Score=29.42 Aligned_cols=9 Identities=44% Similarity=1.162 Sum_probs=7.2
Q ss_pred hhhhhcCCc
Q 022801 278 THWARHGTN 286 (292)
Q Consensus 278 ~~WAkHGTN 286 (292)
.-|.||||=
T Consensus 104 hEW~KHGTC 112 (222)
T d1bola_ 104 HEWSKHGTC 112 (222)
T ss_dssp HHHHHTGGG
T ss_pred HHHHhcccc
Confidence 448999995
No 7
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.08 E-value=9.9 Score=24.12 Aligned_cols=9 Identities=22% Similarity=0.899 Sum_probs=7.1
Q ss_pred hhhhhhcCC
Q 022801 277 RTHWARHGT 285 (292)
Q Consensus 277 k~~WAkHGT 285 (292)
|+||||-|-
T Consensus 1 kdYw~kfge 9 (34)
T d1x6aa1 1 KDYWGKFGE 9 (34)
T ss_dssp CCSSCCSSC
T ss_pred CcHHHHHHH
Confidence 689999763
No 8
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]}
Probab=18.05 E-value=31 Score=27.88 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=17.4
Q ss_pred cChHHHHHHHHHHHhcccC
Q 022801 251 MSQGAFKKVLEKLAAEGYN 269 (292)
Q Consensus 251 MS~gaf~klL~rLa~eg~~ 269 (292)
-|.+.|.+++++|.++|||
T Consensus 67 ps~~~~~~~~~~~~~~gyd 85 (285)
T d1mgpa_ 67 PSVEDFKKRYLKYKEEDYD 85 (285)
T ss_dssp CCHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 3779999999999999998
No 9
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.51 E-value=13 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.600 Sum_probs=18.8
Q ss_pred CCCCCccchhhhhhcCCcceee
Q 022801 269 NFANPIDLRTHWARHGTNKFVT 290 (292)
Q Consensus 269 ~ls~piDLk~~WAkHGTNk~vt 290 (292)
|...|+|+...|.++.+||||-
T Consensus 68 d~E~vl~v~~~W~~~~~~r~v~ 89 (100)
T d1wgra_ 68 DHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp SSSCHHHHHTTSCSSSCCEEEE
T ss_pred chHhHHHHHHcCCCCCCCEEEE
Confidence 4556999999999999999984
No 10
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=17.24 E-value=27 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHhcccCCCCCccc--------hhhhhhcCC
Q 022801 258 KVLEKLAAEGYNFANPIDL--------RTHWARHGT 285 (292)
Q Consensus 258 klL~rLa~eg~~ls~piDL--------k~~WAkHGT 285 (292)
.++..|..+=.+|..|.+. +.-|.||||
T Consensus 58 ~~~~~l~~~wp~l~~~~~~~~~~~~fW~hEW~KHGT 93 (196)
T d1iooa_ 58 KMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGS 93 (196)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHCHHHHHHHHHTGG
T ss_pred hhhhHHHHhhhhhccccccCCccchhHHhhhhhccc
Confidence 4566666666677666542 345889998
Done!