Citrus Sinensis ID: 022802


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MIARTIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
cccccccccccEEEEEEEcccHHcHHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccEEEEcccccccccccccccHHHHHHHHHccccccccccEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccEEccccccccccccccccc
ccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccEHHHHHHEEEcccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHcccEEEEcEcHcccccEEEEccccccccccccccccHHHHHHHcccccccccccEEEccccccccEEEEEEEcccEEcccHHHHHHHHHHHcHHcccccccccccEEEEEEccccEEcccccHHHHHcHHHccccccccccEEEEEEEcc
MIARTIAKGKKITVLsidgggvkgiiPGTILAFLESRlqdldgpnariadyfdivagtstggligtmltapnkdgrpmyaakdinnfyfehcpkifpqlsrggnFLRSIISSLSKwvrpmydgkyIRSLTKEILEDitikdtltnliiptfdikrlqpvifssndALQVKKGALKNarladicvgtsaaptylpahhfvtkdsttgdtcsfdlidggvaandpvlerpkeqciivhamppngaglnghimEAEHQCWTSSLMQALIWLTsmsrhsfnppsarpitfefrmir
miartiakgkkitvlsidgggvkGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSlskwvrpmYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTsmsrhsfnppsarpitfefrmir
MIARTIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
*****IAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSM*********************
************TVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPP******************SSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
********GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
****TIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIARTIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVHAMPPNGAGLNGHIMEAEHQCWTSSLMQALIWLTSMSRHSFNPPSARPITFEFRMIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.674 0.509 0.476 2e-49
Q42502386 Patatin-2-Kuras 3 OS=Sola N/A no 0.681 0.515 0.493 2e-43
P15478386 Patatin-T5 OS=Solanum tub N/A no 0.681 0.515 0.479 8e-43
Q3YJT3374 Patatin-2-Kuras 1 OS=Sola N/A no 0.681 0.532 0.488 1e-42
Q3YJT2386 Patatin-2-Kuras 2 OS=Sola N/A no 0.681 0.515 0.479 2e-42
Q2MY38387 Patatin-13 OS=Solanum tub N/A no 0.684 0.516 0.465 4e-42
Q2MY40387 Patatin-11 OS=Solanum tub N/A no 0.684 0.516 0.474 1e-41
Q2MY52386 Patatin group M-2 OS=Sola N/A no 0.678 0.512 0.490 2e-41
Q3YJT0374 Patatin-2-Kuras 4 OS=Sola N/A no 0.681 0.532 0.484 2e-41
Q8LPW4386 Patatin-17 OS=Solanum car N/A no 0.681 0.515 0.456 3e-41
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/216 (47%), Positives = 138/216 (63%), Gaps = 19/216 (8%)

Query: 12  ITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTA 70
           +TVLSIDGGGVKGIIPGTIL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T 
Sbjct: 29  VTVLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITT 88

Query: 71  PNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLT 130
           PN++ RP  AA +I  FYFEH P IF              SS  ++  P YDGKY+  + 
Sbjct: 89  PNENNRPFAAANEIVPFYFEHGPHIFN-------------SSTGQFFGPKYDGKYLMQVL 135

Query: 131 KEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSAAP 190
           +E L +  +   LT + I +FDIK  +PVIF+ ++   + K    +A++ DIC  T+AAP
Sbjct: 136 QEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN---LAKSPELDAKMYDICYSTAAAP 192

Query: 191 TYLPAHHFVTKDSTTGDTCSFDLIDGGVA-ANDPVL 225
           TY P H+F T ++  GD   F+L+DG VA   DP L
Sbjct: 193 TYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPAL 227




Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q42502|PT2K3_SOLTU Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1 Back     alignment and function description
>sp|P15478|PATT5_SOLTU Patatin-T5 OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q3YJT3|PT2K1_SOLTU Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1 Back     alignment and function description
>sp|Q3YJT2|PT2K2_SOLTU Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1 Back     alignment and function description
>sp|Q2MY38|PAT13_SOLTU Patatin-13 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY40|PAT11_SOLTU Patatin-11 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY52|PATM2_SOLTU Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT0|PT2K4_SOLTU Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPW4|PAT17_SOLCD Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
225470462 397 PREDICTED: patatin group A-3-like [Vitis 0.75 0.551 0.635 5e-76
147816211 397 hypothetical protein VITISV_024099 [Viti 0.75 0.551 0.631 3e-75
296084716378 unnamed protein product [Vitis vinifera] 0.695 0.537 0.635 4e-74
359497058388 PREDICTED: LOW QUALITY PROTEIN: patatin 0.770 0.579 0.638 2e-73
242040711 437 hypothetical protein SORBIDRAFT_01g03338 0.739 0.494 0.573 3e-72
414867121 428 TPA: hypothetical protein ZEAMMB73_59849 0.732 0.5 0.582 4e-72
9794870 411 patatin-like protein 3 [Nicotiana tabacu 0.739 0.525 0.647 3e-71
357141605 429 PREDICTED: patatin group A-3-like [Brach 0.708 0.482 0.628 5e-71
449521132 393 PREDICTED: patatin group A-3-like [Cucum 0.726 0.539 0.595 1e-69
326488817 426 predicted protein [Hordeum vulgare subsp 0.705 0.483 0.600 2e-69
>gi|225470462|ref|XP_002262942.1| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/228 (63%), Positives = 185/228 (81%), Gaps = 9/228 (3%)

Query: 2   IARTIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTG 61
           +A +  KG+ +TVLSIDGGGV+GIIPGT+LAFLES+ Q+LDG +ARIADYFD++AGTSTG
Sbjct: 1   MATSFGKGRMVTVLSIDGGGVRGIIPGTLLAFLESKFQELDGDDARIADYFDVIAGTSTG 60

Query: 62  GLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIIS---SLSKWVR 118
           GL+  MLTAPNKD RP++AAKDIN+FY +HCP+IFPQ +R  +F +S IS   SL   VR
Sbjct: 61  GLVTAMLTAPNKDNRPVFAAKDINSFYLDHCPEIFPQ-NRRISFGKSTISRFGSLIDAVR 119

Query: 119 -PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNA 177
            P Y+GKY++SL  ++L+ + +K TLTN++IPTFDIK LQPVIFS+++A   K    KNA
Sbjct: 120 GPKYNGKYLQSLAVDLLDKVYLKQTLTNVVIPTFDIKLLQPVIFSTDEA---KVNVAKNA 176

Query: 178 RLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
           RL+DIC+ TSAAPTYLPAH+F TK++  G T SF+LIDGGVAAN+P L
Sbjct: 177 RLSDICISTSAAPTYLPAHYFETKEA-NGKTRSFNLIDGGVAANNPTL 223




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816211|emb|CAN62059.1| hypothetical protein VITISV_024099 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084716|emb|CBI25858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497058|ref|XP_003635410.1| PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|242040711|ref|XP_002467750.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] gi|241921604|gb|EER94748.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414867121|tpg|DAA45678.1| TPA: hypothetical protein ZEAMMB73_598493 [Zea mays] Back     alignment and taxonomy information
>gi|9794870|gb|AAF98369.1|AF158253_1 patatin-like protein 3 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357141605|ref|XP_003572284.1| PREDICTED: patatin group A-3-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|449521132|ref|XP_004167585.1| PREDICTED: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|326488817|dbj|BAJ98020.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2066286 407 PLA2A "phospholipase A 2A" [Ar 0.719 0.515 0.571 3.4e-61
TAIR|locus:2114995 414 PLP1 [Arabidopsis thaliana (ta 0.715 0.504 0.541 5.1e-58
TAIR|locus:2115065 428 PLP4 "AT4G37050" [Arabidopsis 0.715 0.488 0.526 1.6e-54
TAIR|locus:2158337 401 AT5G43590 [Arabidopsis thalian 0.698 0.508 0.536 1.2e-51
TAIR|locus:2082702 488 pPLAIIIbeta "patatin-related p 0.708 0.424 0.352 8.2e-26
TAIR|locus:2056088 499 PLP6 "PATATIN-like protein 6" 0.684 0.400 0.375 4.3e-25
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.684 0.520 0.347 8.7e-24
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.660 0.543 0.281 8e-18
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.660 0.543 0.281 8e-18
WB|WBGene00022233546 Y73B6BL.4 [Caenorhabditis eleg 0.561 0.300 0.303 6.9e-07
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 124/217 (57%), Positives = 155/217 (71%)

Query:     9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTML 68
             G  +T+LSIDGGG++G+IP  IL FLES LQ LDG  AR+ADYFD++AGTSTGGL+  ML
Sbjct:    16 GNLVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75

Query:    69 TAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRS 128
             TAPNK+GRP++AA +I +FY E CPKIFPQ     +  + ++ SL+    P YDGKY+  
Sbjct:    76 TAPNKEGRPLFAASEIKDFYLEQCPKIFPQDHFPFSAAKKLVKSLTG---PKYDGKYLHQ 132

Query:   129 LTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSA 188
             L    L D  +  TLTN++IPTFDIK LQP IFSS    +VK   LK+A LADI + TSA
Sbjct:   133 LIHAKLGDTKLSQTLTNVVIPTFDIKHLQPTIFSS---YEVKNHPLKDATLADIAISTSA 189

Query:   189 APTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
             APTYLPAH F  +D   G+   ++LIDGGVAAN+P L
Sbjct:   190 APTYLPAHFFKVED-LNGNAKEYNLIDGGVAANNPAL 225




GO:0006629 "lipid metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0045735 "nutrient reservoir activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IEP;IMP
GO:0016020 "membrane" evidence=IDA
GO:0016298 "lipase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0008219 "cell death" evidence=IGI
GO:0031408 "oxylipin biosynthetic process" evidence=IMP
GO:0051607 "defense response to virus" evidence=IMP
GO:0071456 "cellular response to hypoxia" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009646 "response to absence of light" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
WB|WBGene00022233 Y73B6BL.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00009696001
SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (383 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 1e-112
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 4e-52
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 2e-44
COG3621 394 COG3621, COG3621, Patatin [General function predic 5e-33
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 2e-19
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 4e-19
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 9e-19
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 3e-14
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 5e-14
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 1e-08
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 1e-05
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 8e-05
cd01819155 cd01819, Patatin_and_cPLA2, Patatins and Phospholi 1e-04
cd07208266 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical pa 0.004
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information
 Score =  327 bits (840), Expect = e-112
 Identities = 136/217 (62%), Positives = 164/217 (75%), Gaps = 7/217 (3%)

Query: 9   GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTML 68
           GK ITVLSIDGGG++GIIP TIL FLE +LQ+LDGP+ARIADYFD++AGTSTGGLI  ML
Sbjct: 1   GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAML 60

Query: 69  TAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRS 128
           TAPN++ RP++AAKDI  FY E+ PKIFPQ +      R  + SL   + P YDG Y+  
Sbjct: 61  TAPNENKRPLFAAKDIVQFYLENGPKIFPQSTGQFEDDRKKLRSL---LGPKYDGVYLHD 117

Query: 129 LTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSA 188
           L  E+L D  + DTLTN++IPTFDIK LQPVIFSS+ A   K   L NARLAD+C+ TSA
Sbjct: 118 LLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKA---KNDKLTNARLADVCISTSA 174

Query: 189 APTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
           APTY PAH+F T+DS  GD   F+L+DGGVAAN+P L
Sbjct: 175 APTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTL 210


Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349

>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases Back     alignment and domain information
>gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 100.0
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 100.0
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 100.0
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 100.0
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 100.0
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 100.0
COG3621 394 Patatin [General function prediction only] 99.98
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.98
PRK10279300 hypothetical protein; Provisional 99.98
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.98
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.97
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.97
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.97
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.96
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.96
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.96
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.96
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.96
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.96
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.95
cd07219 382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.95
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.94
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.94
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.94
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.93
cd07223 405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.92
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.9
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.89
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.87
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.86
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.86
KOG0513 503 consensus Ca2+-independent phospholipase A2 [Lipid 99.65
KOG3773 354 consensus Adiponutrin and related vesicular transp 99.43
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 98.79
cd00147 438 cPLA2_like Cytosolic phospholipase A2, catalytic d 98.02
cd07202 430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 96.42
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 95.63
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 94.5
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 94.45
cd07200 505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 93.37
smart00022 549 PLAc Cytoplasmic phospholipase A2, catalytic subun 92.83
cd07203 552 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA 91.54
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information
Probab=100.00  E-value=2.5e-49  Score=362.38  Aligned_cols=235  Identities=58%  Similarity=0.920  Sum_probs=201.0

Q ss_pred             CCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCCCCCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 022802            9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFY   88 (292)
Q Consensus         9 ~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g~~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~~~~~   88 (292)
                      |+++|||||||||+||++++++|++||+++++..|++.++.++||+|+|||+|||+|++|+.+...++|.++++|+.++|
T Consensus         1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y   80 (349)
T cd07214           1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY   80 (349)
T ss_pred             CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence            46899999999999999999999999999988888788999999999999999999999999877789999999999999


Q ss_pred             HhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCCcchh
Q 022802           89 FEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQ  168 (292)
Q Consensus        89 ~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~~~~~  168 (292)
                      .+...++|.....   .+..+.+.++.+.++.|+++.|+++|+++|++.++.|+.++++|+|+|+.+++|++|++   |.
T Consensus        81 ~~~~~~iF~~~~~---~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~---~~  154 (349)
T cd07214          81 LENGPKIFPQSTG---QFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSS---SK  154 (349)
T ss_pred             HHhhHHhcCCCcc---cchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeC---cc
Confidence            9999999987543   12122233444557899999999999999999999999999999999999999999999   77


Q ss_pred             hhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeeccccccCCccchHHHHHHHhhc------------
Q 022802          169 VKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVH------------  236 (292)
Q Consensus       169 ~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~n~P~~~ai~ea~~i~~------------  236 (292)
                      .+.+...+..+|+|++||||+|+||||+.+.+.++ .|+.+.+.|+|||+.+|||+..|+.|+.....            
T Consensus       155 ~~~~~~~~~~l~da~rASSAaPtyFpp~~i~~~~~-~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~  233 (349)
T cd07214         155 AKNDKLTNARLADVCISTSAAPTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPL  233 (349)
T ss_pred             ccCCcccCcCHHHHHHHhcccccccCCeEeecccC-CCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCC
Confidence            66666678999999999999999999999875321 13233467999999999999999999876421            


Q ss_pred             -----CCCCCCcccCcccc
Q 022802          237 -----AMPPNGAGLNGHIM  250 (292)
Q Consensus       237 -----~~~s~gtg~~~~~~  250 (292)
                           .+.|+|||..+..+
T Consensus       234 ~~~~i~vlSiGTG~~~~~~  252 (349)
T cd07214         234 DYKKLLVLSLGTGSAEESY  252 (349)
T ss_pred             CCCeEEEEEecCCCccccc
Confidence                 15699999876654



Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.

>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 1e-40
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure

Iteration: 1

Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/219 (45%), Positives = 139/219 (63%), Gaps = 20/219 (9%) Query: 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTM 67 G+ +TVLSIDGGG++GIIP TIL FLE +LQ+ D +AR+ADYFD++ GTSTGGL+ Sbjct: 13 GEXVTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAX 72 Query: 68 LTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIR 127 ++ PN++ RP AAK+I FYFEH P+IF + G L P YDGKY+ Sbjct: 73 ISTPNENNRPFAAAKEIVPFYFEHGPQIF---NPSGQIL-----------GPKYDGKYLX 118 Query: 128 SLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTS 187 + +E L + + LT ++I +FDIK +PVIF+ ++ + +A+ DI T+ Sbjct: 119 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSN---LANSPELDAKXYDISYSTA 175 Query: 188 AAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVL 225 AAPTY P H+FVT +++ GD F+L+DG VA DP L Sbjct: 176 AAPTYFPPHYFVT-NTSNGDEYEFNLVDGAVATVADPAL 213

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1oxw_A373 Patatin; alpha/beta class fold with approximately 7e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 6e-04
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  183 bits (466), Expect = 7e-56
 Identities = 99/221 (44%), Positives = 138/221 (62%), Gaps = 20/221 (9%)

Query: 8   KGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGT 66
            G+ +TVLSIDGGG++GIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  
Sbjct: 12  LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTA 71

Query: 67  MLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYI 126
           M++ PN++ RP  AAK+I  FYFEH P+IF    +               + P YDGKY+
Sbjct: 72  MISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQ--------------ILGPKYDGKYL 117

Query: 127 RSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGT 186
             + +E L +  +   LT ++I +FDIK  +PVIF+ ++          +A++ DI   T
Sbjct: 118 MQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNL---ANSPELDAKMYDISYST 174

Query: 187 SAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLE 226
           +AAPTY P H+FVT  S  GD   F+L+DG VA   DP L 
Sbjct: 175 AAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALL 214


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Length = 711 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A 577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.96
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.94
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 97.19
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=2.1e-47  Score=352.29  Aligned_cols=225  Identities=45%  Similarity=0.797  Sum_probs=195.3

Q ss_pred             CCCCCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCCC-CCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHH
Q 022802            6 IAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGP-NARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDI   84 (292)
Q Consensus         6 ~~~~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g~-~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~   84 (292)
                      .+++++.++|||||||+||++++|||++|++++++.+|+ ++++.+.||+|+|||+|||+|++|+.+...++|+++++++
T Consensus        10 ~~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el   89 (373)
T 1oxw_A           10 AQLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEI   89 (373)
T ss_dssp             --CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGH
T ss_pred             cCCCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHH
Confidence            356677999999999999999999999999998877774 6788899999999999999999999997778898999999


Q ss_pred             HHHHHhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCC
Q 022802           85 NNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSN  164 (292)
Q Consensus        85 ~~~~~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~  164 (292)
                      .++|.++..++|....              .+.++.|+.+.|+++|++.|++.+|.|+.++++|+|||+.++++++|++ 
T Consensus        90 ~~~~~~~~~~iF~~~~--------------~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~-  154 (373)
T 1oxw_A           90 VPFYFEHGPQIFNPSG--------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTK-  154 (373)
T ss_dssp             HHHHHHHHHHHTCCCC--------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEES-
T ss_pred             HHHHHHhhHhhcCCCC--------------ccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeC-
Confidence            9999998888887642              1246789999999999999999999999999999999999999999999 


Q ss_pred             cchhhhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeecccccc-CCccchHHHHHHHhhcC------
Q 022802          165 DALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLERPKEQCIIVHA------  237 (292)
Q Consensus       165 ~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~-n~P~~~ai~ea~~i~~~------  237 (292)
                        |..+.++..+..+|+|++||||+|+||+|+++...++ +|+.++..|+|||+.+ |||+..|+.|++++|+.      
T Consensus       155 --~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~-~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~  231 (373)
T 1oxw_A          155 --SNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFAS  231 (373)
T ss_dssp             --SSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTT
T ss_pred             --CCCCCCCccCchHHHHHHHHccCCcCcCcEEeeccCC-CCcccceeeecCcccccCChHHHHHHHHHHHhccCccccc
Confidence              8766666778899999999999999999999975421 2543445899999999 99999999999988752      


Q ss_pred             ----------CCCCCcccCcc
Q 022802          238 ----------MPPNGAGLNGH  248 (292)
Q Consensus       238 ----------~~s~gtg~~~~  248 (292)
                                ++|+|||..|.
T Consensus       232 ~~~~~~~~~~vvSlGTG~~~~  252 (373)
T 1oxw_A          232 IRSLNYKKMLLLSLGTGTTSE  252 (373)
T ss_dssp             STTCCGGGEEEEEECCCCBCT
T ss_pred             ccccccCceEEEEecCCCCCC
Confidence                      45899998653



>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 8e-43
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
 Score =  148 bits (373), Expect = 8e-43
 Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 20/245 (8%)

Query: 9   GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTM 67
           G+ +TVLSIDGGG++GIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M
Sbjct: 2   GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAM 61

Query: 68  LTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIR 127
           ++ PN++ RP  AAK+I  FYFEH P+IF    +               + P YDGKY+ 
Sbjct: 62  ISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQ--------------ILGPKYDGKYLM 107

Query: 128 SLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTS 187
            + +E L +  +   LT ++I +FDIK  +PVIF+ ++          +A++ DI   T+
Sbjct: 108 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNL---ANSPELDAKMYDISYSTA 164

Query: 188 AAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAAN-DPVLERPKEQCIIVHAMPPNGAGLN 246
           AAPTY P H+FVT  S   +   F+L+DG VA   DP L        +    P   +  +
Sbjct: 165 AAPTYFPPHYFVTNTSNGDEY-EFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRS 223

Query: 247 GHIME 251
            +  +
Sbjct: 224 LNYKK 228


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 96.6
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00  E-value=4.8e-42  Score=312.96  Aligned_cols=211  Identities=47%  Similarity=0.838  Sum_probs=183.3

Q ss_pred             CCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCC-CCCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 022802            9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNF   87 (292)
Q Consensus         9 ~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g-~~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~~~~   87 (292)
                      |+.++||||||||+||++++|||++|++++.+..+ .++++.+.||+|+|||+|||+|++++.+.+...+.+..+++.+.
T Consensus         2 ~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~   81 (360)
T d1oxwa_           2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPF   81 (360)
T ss_dssp             CSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            68899999999999999999999999999876554 46788999999999999999999999998777777888899988


Q ss_pred             HHhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCCcch
Q 022802           88 YFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDAL  167 (292)
Q Consensus        88 ~~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~~~~  167 (292)
                      |.+....+|....              .+.++.|+.+.+++++++.|++.++.+..+++.++++++.++++++|++   +
T Consensus        82 ~~~~~~~~f~~~~--------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~  144 (360)
T d1oxwa_          82 YFEHGPQIFNPSG--------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTK---S  144 (360)
T ss_dssp             HHHHHHHHTCCCC--------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEES---S
T ss_pred             HHhhcchhhhccc--------------cccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEec---c
Confidence            8777666665433              2346799999999999999999999999999999999999999999999   7


Q ss_pred             hhhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeecccccc-CCccchHHHHHHHhhcC
Q 022802          168 QVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLERPKEQCIIVHA  237 (292)
Q Consensus       168 ~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~-n~P~~~ai~ea~~i~~~  237 (292)
                      ....+...+..+|+|++||||+|++|||+++.++.. .|....+.|+|||+.. |||...|+.|+..+|+.
T Consensus       145 ~~~~~~~~~~~l~~a~~ASsA~P~~F~p~~~~~~~~-~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~  214 (360)
T d1oxwa_         145 NLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATRLAQK  214 (360)
T ss_dssp             STTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTT
T ss_pred             ccccCCcccchHHHhhhhhhcCCCCCCCEEEecccC-CCCceeEEecccchhhccCchHHHHHHHHHhccc
Confidence            766667788999999999999999999999987643 2333456799999976 58999999999999874



>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure