Citrus Sinensis ID: 022802
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 292 | ||||||
| 225470462 | 397 | PREDICTED: patatin group A-3-like [Vitis | 0.75 | 0.551 | 0.635 | 5e-76 | |
| 147816211 | 397 | hypothetical protein VITISV_024099 [Viti | 0.75 | 0.551 | 0.631 | 3e-75 | |
| 296084716 | 378 | unnamed protein product [Vitis vinifera] | 0.695 | 0.537 | 0.635 | 4e-74 | |
| 359497058 | 388 | PREDICTED: LOW QUALITY PROTEIN: patatin | 0.770 | 0.579 | 0.638 | 2e-73 | |
| 242040711 | 437 | hypothetical protein SORBIDRAFT_01g03338 | 0.739 | 0.494 | 0.573 | 3e-72 | |
| 414867121 | 428 | TPA: hypothetical protein ZEAMMB73_59849 | 0.732 | 0.5 | 0.582 | 4e-72 | |
| 9794870 | 411 | patatin-like protein 3 [Nicotiana tabacu | 0.739 | 0.525 | 0.647 | 3e-71 | |
| 357141605 | 429 | PREDICTED: patatin group A-3-like [Brach | 0.708 | 0.482 | 0.628 | 5e-71 | |
| 449521132 | 393 | PREDICTED: patatin group A-3-like [Cucum | 0.726 | 0.539 | 0.595 | 1e-69 | |
| 326488817 | 426 | predicted protein [Hordeum vulgare subsp | 0.705 | 0.483 | 0.600 | 2e-69 |
| >gi|225470462|ref|XP_002262942.1| PREDICTED: patatin group A-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 185/228 (81%), Gaps = 9/228 (3%)
Query: 2 IARTIAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTG 61
+A + KG+ +TVLSIDGGGV+GIIPGT+LAFLES+ Q+LDG +ARIADYFD++AGTSTG
Sbjct: 1 MATSFGKGRMVTVLSIDGGGVRGIIPGTLLAFLESKFQELDGDDARIADYFDVIAGTSTG 60
Query: 62 GLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIIS---SLSKWVR 118
GL+ MLTAPNKD RP++AAKDIN+FY +HCP+IFPQ +R +F +S IS SL VR
Sbjct: 61 GLVTAMLTAPNKDNRPVFAAKDINSFYLDHCPEIFPQ-NRRISFGKSTISRFGSLIDAVR 119
Query: 119 -PMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNA 177
P Y+GKY++SL ++L+ + +K TLTN++IPTFDIK LQPVIFS+++A K KNA
Sbjct: 120 GPKYNGKYLQSLAVDLLDKVYLKQTLTNVVIPTFDIKLLQPVIFSTDEA---KVNVAKNA 176
Query: 178 RLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
RL+DIC+ TSAAPTYLPAH+F TK++ G T SF+LIDGGVAAN+P L
Sbjct: 177 RLSDICISTSAAPTYLPAHYFETKEA-NGKTRSFNLIDGGVAANNPTL 223
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816211|emb|CAN62059.1| hypothetical protein VITISV_024099 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296084716|emb|CBI25858.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359497058|ref|XP_003635410.1| PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|242040711|ref|XP_002467750.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] gi|241921604|gb|EER94748.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|414867121|tpg|DAA45678.1| TPA: hypothetical protein ZEAMMB73_598493 [Zea mays] | Back alignment and taxonomy information |
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| >gi|9794870|gb|AAF98369.1|AF158253_1 patatin-like protein 3 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|357141605|ref|XP_003572284.1| PREDICTED: patatin group A-3-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|449521132|ref|XP_004167585.1| PREDICTED: patatin group A-3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|326488817|dbj|BAJ98020.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 292 | ||||||
| TAIR|locus:2066286 | 407 | PLA2A "phospholipase A 2A" [Ar | 0.719 | 0.515 | 0.571 | 3.4e-61 | |
| TAIR|locus:2114995 | 414 | PLP1 [Arabidopsis thaliana (ta | 0.715 | 0.504 | 0.541 | 5.1e-58 | |
| TAIR|locus:2115065 | 428 | PLP4 "AT4G37050" [Arabidopsis | 0.715 | 0.488 | 0.526 | 1.6e-54 | |
| TAIR|locus:2158337 | 401 | AT5G43590 [Arabidopsis thalian | 0.698 | 0.508 | 0.536 | 1.2e-51 | |
| TAIR|locus:2082702 | 488 | pPLAIIIbeta "patatin-related p | 0.708 | 0.424 | 0.352 | 8.2e-26 | |
| TAIR|locus:2056088 | 499 | PLP6 "PATATIN-like protein 6" | 0.684 | 0.400 | 0.375 | 4.3e-25 | |
| TAIR|locus:2077269 | 384 | PLP9 "PATATIN-like protein 9" | 0.684 | 0.520 | 0.347 | 8.7e-24 | |
| UNIPROTKB|Q9KVG8 | 355 | VC0178 "Patatin-related protei | 0.660 | 0.543 | 0.281 | 8e-18 | |
| TIGR_CMR|VC_0178 | 355 | VC_0178 "patatin family protei | 0.660 | 0.543 | 0.281 | 8e-18 | |
| WB|WBGene00022233 | 546 | Y73B6BL.4 [Caenorhabditis eleg | 0.561 | 0.300 | 0.303 | 6.9e-07 |
| TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 124/217 (57%), Positives = 155/217 (71%)
Query: 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTML 68
G +T+LSIDGGG++G+IP IL FLES LQ LDG AR+ADYFD++AGTSTGGL+ ML
Sbjct: 16 GNLVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75
Query: 69 TAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRS 128
TAPNK+GRP++AA +I +FY E CPKIFPQ + + ++ SL+ P YDGKY+
Sbjct: 76 TAPNKEGRPLFAASEIKDFYLEQCPKIFPQDHFPFSAAKKLVKSLTG---PKYDGKYLHQ 132
Query: 129 LTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSA 188
L L D + TLTN++IPTFDIK LQP IFSS +VK LK+A LADI + TSA
Sbjct: 133 LIHAKLGDTKLSQTLTNVVIPTFDIKHLQPTIFSS---YEVKNHPLKDATLADIAISTSA 189
Query: 189 APTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
APTYLPAH F +D G+ ++LIDGGVAAN+P L
Sbjct: 190 APTYLPAHFFKVED-LNGNAKEYNLIDGGVAANNPAL 225
|
|
| TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| WB|WBGene00022233 Y73B6BL.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00009696001 | SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (383 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 292 | |||
| cd07214 | 349 | cd07214, Pat17_isozyme_like, Patatin-like phosphol | 1e-112 | |
| cd07215 | 329 | cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p | 4e-52 | |
| cd07199 | 258 | cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph | 2e-44 | |
| COG3621 | 394 | COG3621, COG3621, Patatin [General function predic | 5e-33 | |
| cd07213 | 288 | cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p | 2e-19 | |
| pfam01734 | 189 | pfam01734, Patatin, Patatin-like phospholipase | 4e-19 | |
| cd07217 | 344 | cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p | 9e-19 | |
| cd07211 | 308 | cd07211, Pat_PNPLA8, Patatin-like phospholipase do | 3e-14 | |
| cd07216 | 309 | cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p | 5e-14 | |
| cd07212 | 312 | cd07212, Pat_PNPLA9, Patatin-like phospholipase do | 1e-08 | |
| cd07207 | 194 | cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr | 1e-05 | |
| cd07205 | 175 | cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like | 8e-05 | |
| cd01819 | 155 | cd01819, Patatin_and_cPLA2, Patatins and Phospholi | 1e-04 | |
| cd07208 | 266 | cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical pa | 0.004 |
| >gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-112
Identities = 136/217 (62%), Positives = 164/217 (75%), Gaps = 7/217 (3%)
Query: 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTML 68
GK ITVLSIDGGG++GIIP TIL FLE +LQ+LDGP+ARIADYFD++AGTSTGGLI ML
Sbjct: 1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAML 60
Query: 69 TAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRS 128
TAPN++ RP++AAKDI FY E+ PKIFPQ + R + SL + P YDG Y+
Sbjct: 61 TAPNENKRPLFAAKDIVQFYLENGPKIFPQSTGQFEDDRKKLRSL---LGPKYDGVYLHD 117
Query: 129 LTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTSA 188
L E+L D + DTLTN++IPTFDIK LQPVIFSS+ A K L NARLAD+C+ TSA
Sbjct: 118 LLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKA---KNDKLTNARLADVCISTSA 174
Query: 189 APTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVL 225
APTY PAH+F T+DS GD F+L+DGGVAAN+P L
Sbjct: 175 APTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTL 210
|
Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349 |
| >gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria | Back alignment and domain information |
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| >gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 | Back alignment and domain information |
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| >gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase | Back alignment and domain information |
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| >gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase | Back alignment and domain information |
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| >gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase | Back alignment and domain information |
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| >gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 | Back alignment and domain information |
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| >gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase | Back alignment and domain information |
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| >gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 | Back alignment and domain information |
|---|
| >gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 | Back alignment and domain information |
|---|
| >gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 | Back alignment and domain information |
|---|
| >gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases | Back alignment and domain information |
|---|
| >gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 292 | |||
| cd07214 | 349 | Pat17_isozyme_like Patatin-like phospholipase of p | 100.0 | |
| cd07211 | 308 | Pat_PNPLA8 Patatin-like phospholipase domain conta | 100.0 | |
| cd07215 | 329 | Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa | 100.0 | |
| cd07216 | 309 | Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa | 100.0 | |
| cd07212 | 312 | Pat_PNPLA9 Patatin-like phospholipase domain conta | 100.0 | |
| KOG4231 | 763 | consensus Intracellular membrane-bound Ca2+-indepe | 100.0 | |
| cd07213 | 288 | Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa | 100.0 | |
| cd07217 | 344 | Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa | 100.0 | |
| cd07199 | 258 | Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas | 100.0 | |
| cd07205 | 175 | Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi | 100.0 | |
| cd07207 | 194 | Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho | 100.0 | |
| cd07228 | 175 | Pat_NTE_like_bacteria Bacterial patatin-like phosp | 100.0 | |
| cd07210 | 221 | Pat_hypo_W_succinogenes_WS1459_like Hypothetical p | 100.0 | |
| cd07225 | 306 | Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai | 100.0 | |
| cd07227 | 269 | Pat_Fungal_NTE1 Fungal patatin-like phospholipase | 100.0 | |
| COG3621 | 394 | Patatin [General function prediction only] | 99.98 | |
| cd07230 | 421 | Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG | 99.98 | |
| PRK10279 | 300 | hypothetical protein; Provisional | 99.98 | |
| cd07232 | 407 | Pat_PLPL Patain-like phospholipase. Patatin-like p | 99.98 | |
| cd07209 | 215 | Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim | 99.97 | |
| cd07208 | 266 | Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi | 99.97 | |
| cd07198 | 172 | Patatin Patatin-like phospholipase. Patatin is a s | 99.97 | |
| COG1752 | 306 | RssA Predicted esterase of the alpha-beta hydrolas | 99.96 | |
| cd07229 | 391 | Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly | 99.96 | |
| cd07222 | 246 | Pat_PNPLA4 Patatin-like phospholipase domain conta | 99.96 | |
| cd07204 | 243 | Pat_PNPLA_like Patatin-like phospholipase domain c | 99.96 | |
| cd07221 | 252 | Pat_PNPLA3 Patatin-like phospholipase domain conta | 99.96 | |
| cd07218 | 245 | Pat_iPLA2 Calcium-independent phospholipase A2; Cl | 99.96 | |
| cd07231 | 323 | Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar | 99.95 | |
| cd07219 | 382 | Pat_PNPLA1 Patatin-like phospholipase domain conta | 99.95 | |
| cd07220 | 249 | Pat_PNPLA2 Patatin-like phospholipase domain conta | 99.94 | |
| cd07206 | 298 | Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and | 99.94 | |
| cd07224 | 233 | Pat_like Patatin-like phospholipase. Patatin-like | 99.94 | |
| PF01734 | 204 | Patatin: Patatin-like phospholipase This Prosite f | 99.93 | |
| cd07223 | 405 | Pat_PNPLA5-mammals Patatin-like phospholipase doma | 99.92 | |
| KOG2214 | 543 | consensus Predicted esterase of the alpha-beta hyd | 99.9 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 99.89 | |
| TIGR03607 | 739 | patatin-related protein. This bacterial protein fa | 99.87 | |
| cd01819 | 155 | Patatin_and_cPLA2 Patatins and Phospholipases. Pat | 99.86 | |
| COG4667 | 292 | Predicted esterase of the alpha-beta hydrolase sup | 99.86 | |
| KOG0513 | 503 | consensus Ca2+-independent phospholipase A2 [Lipid | 99.65 | |
| KOG3773 | 354 | consensus Adiponutrin and related vesicular transp | 99.43 | |
| KOG0513 | 503 | consensus Ca2+-independent phospholipase A2 [Lipid | 98.79 | |
| cd00147 | 438 | cPLA2_like Cytosolic phospholipase A2, catalytic d | 98.02 | |
| cd07202 | 430 | cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase | 96.42 | |
| cd07201 | 541 | cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and | 95.63 | |
| PF01735 | 491 | PLA2_B: Lysophospholipase catalytic domain; InterP | 94.5 | |
| KOG1325 | 571 | consensus Lysophospholipase [Lipid transport and m | 94.45 | |
| cd07200 | 505 | cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 | 93.37 | |
| smart00022 | 549 | PLAc Cytoplasmic phospholipase A2, catalytic subun | 92.83 | |
| cd07203 | 552 | cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA | 91.54 |
| >cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=362.38 Aligned_cols=235 Identities=58% Similarity=0.920 Sum_probs=201.0
Q ss_pred CCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCCCCCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 022802 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGPNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFY 88 (292)
Q Consensus 9 ~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g~~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~~~~~ 88 (292)
|+++|||||||||+||++++++|++||+++++..|++.++.++||+|+|||+|||+|++|+.+...++|.++++|+.++|
T Consensus 1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y 80 (349)
T cd07214 1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY 80 (349)
T ss_pred CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence 46899999999999999999999999999988888788999999999999999999999999877789999999999999
Q ss_pred HhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCCcchh
Q 022802 89 FEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQ 168 (292)
Q Consensus 89 ~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~~~~~ 168 (292)
.+...++|..... .+..+.+.++.+.++.|+++.|+++|+++|++.++.|+.++++|+|+|+.+++|++|++ |.
T Consensus 81 ~~~~~~iF~~~~~---~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~---~~ 154 (349)
T cd07214 81 LENGPKIFPQSTG---QFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSS---SK 154 (349)
T ss_pred HHhhHHhcCCCcc---cchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeC---cc
Confidence 9999999987543 12122233444557899999999999999999999999999999999999999999999 77
Q ss_pred hhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeeccccccCCccchHHHHHHHhhc------------
Q 022802 169 VKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAANDPVLERPKEQCIIVH------------ 236 (292)
Q Consensus 169 ~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~n~P~~~ai~ea~~i~~------------ 236 (292)
.+.+...+..+|+|++||||+|+||||+.+.+.++ .|+.+.+.|+|||+.+|||+..|+.|+.....
T Consensus 155 ~~~~~~~~~~l~da~rASSAaPtyFpp~~i~~~~~-~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~ 233 (349)
T cd07214 155 AKNDKLTNARLADVCISTSAAPTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPL 233 (349)
T ss_pred ccCCcccCcCHHHHHHHhcccccccCCeEeecccC-CCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCC
Confidence 66666678999999999999999999999875321 13233467999999999999999999876421
Q ss_pred -----CCCCCCcccCcccc
Q 022802 237 -----AMPPNGAGLNGHIM 250 (292)
Q Consensus 237 -----~~~s~gtg~~~~~~ 250 (292)
.+.|+|||..+..+
T Consensus 234 ~~~~i~vlSiGTG~~~~~~ 252 (349)
T cd07214 234 DYKKLLVLSLGTGSAEESY 252 (349)
T ss_pred CCCeEEEEEecCCCccccc
Confidence 15699999876654
|
Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. |
| >cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 | Back alignment and domain information |
|---|
| >cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria | Back alignment and domain information |
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| >cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase | Back alignment and domain information |
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| >cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 | Back alignment and domain information |
|---|
| >KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] | Back alignment and domain information |
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| >cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase | Back alignment and domain information |
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| >cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase | Back alignment and domain information |
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| >cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 | Back alignment and domain information |
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| >cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 | Back alignment and domain information |
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| >cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 | Back alignment and domain information |
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| >cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 | Back alignment and domain information |
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| >cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes | Back alignment and domain information |
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| >cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 | Back alignment and domain information |
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| >cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 | Back alignment and domain information |
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| >COG3621 Patatin [General function prediction only] | Back alignment and domain information |
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| >cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 | Back alignment and domain information |
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| >PRK10279 hypothetical protein; Provisional | Back alignment and domain information |
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| >cd07232 Pat_PLPL Patain-like phospholipase | Back alignment and domain information |
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| >cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli | Back alignment and domain information |
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| >cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli | Back alignment and domain information |
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| >cd07198 Patatin Patatin-like phospholipase | Back alignment and domain information |
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| >COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] | Back alignment and domain information |
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| >cd07229 Pat_TGL3_like Triacylglycerol lipase 3 | Back alignment and domain information |
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| >cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 | Back alignment and domain information |
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| >cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family | Back alignment and domain information |
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| >cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 | Back alignment and domain information |
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| >cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 | Back alignment and domain information |
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| >cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase | Back alignment and domain information |
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| >cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 | Back alignment and domain information |
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| >cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 | Back alignment and domain information |
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| >cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase | Back alignment and domain information |
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| >cd07224 Pat_like Patatin-like phospholipase | Back alignment and domain information |
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| >PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 | Back alignment and domain information |
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| >cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 | Back alignment and domain information |
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| >KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] | Back alignment and domain information |
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| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
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| >TIGR03607 patatin-related protein | Back alignment and domain information |
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| >cd01819 Patatin_and_cPLA2 Patatins and Phospholipases | Back alignment and domain information |
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| >COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] | Back alignment and domain information |
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| >KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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| >KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] | Back alignment and domain information |
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| >cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids | Back alignment and domain information |
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| >cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent | Back alignment and domain information |
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| >cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent | Back alignment and domain information |
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| >PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 | Back alignment and domain information |
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| >KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
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| >cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent | Back alignment and domain information |
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| >smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit | Back alignment and domain information |
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| >cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 292 | ||||
| 1oxw_A | 373 | The Crystal Structure Of Semet Patatin Length = 373 | 1e-40 |
| >pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 292 | |||
| 1oxw_A | 373 | Patatin; alpha/beta class fold with approximately | 7e-56 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-06 | |
| 3tu3_B | 711 | EXOU; type III secretion system, SPC infectious di | 6e-04 |
| >1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 7e-56
Identities = 99/221 (44%), Positives = 138/221 (62%), Gaps = 20/221 (9%)
Query: 8 KGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGT 66
G+ +TVLSIDGGG++GIIP TIL FLE +LQ++D +AR+ADYFD++ GTSTGGL+
Sbjct: 12 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTA 71
Query: 67 MLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYI 126
M++ PN++ RP AAK+I FYFEH P+IF + + P YDGKY+
Sbjct: 72 MISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQ--------------ILGPKYDGKYL 117
Query: 127 RSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGT 186
+ +E L + + LT ++I +FDIK +PVIF+ ++ +A++ DI T
Sbjct: 118 MQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNL---ANSPELDAKMYDISYST 174
Query: 187 SAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLE 226
+AAPTY P H+FVT S GD F+L+DG VA DP L
Sbjct: 175 AAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Length = 711 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 292 | |||
| 1oxw_A | 373 | Patatin; alpha/beta class fold with approximately | 100.0 | |
| 4akf_A | 577 | VIPD; transferase; 2.90A {Legionella pneumophila} | 99.96 | |
| 3tu3_B | 711 | EXOU; type III secretion system, SPC infectious di | 99.94 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 97.19 |
| >1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=352.29 Aligned_cols=225 Identities=45% Similarity=0.797 Sum_probs=195.3
Q ss_pred CCCCCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCCC-CCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHH
Q 022802 6 IAKGKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDGP-NARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDI 84 (292)
Q Consensus 6 ~~~~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g~-~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~ 84 (292)
.+++++.++|||||||+||++++|||++|++++++.+|+ ++++.+.||+|+|||+|||+|++|+.+...++|+++++++
T Consensus 10 ~~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el 89 (373)
T 1oxw_A 10 AQLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEI 89 (373)
T ss_dssp --CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGH
T ss_pred cCCCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHH
Confidence 356677999999999999999999999999998877774 6788899999999999999999999997778898999999
Q ss_pred HHHHHhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCC
Q 022802 85 NNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSN 164 (292)
Q Consensus 85 ~~~~~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~ 164 (292)
.++|.++..++|.... .+.++.|+.+.|+++|++.|++.+|.|+.++++|+|||+.++++++|++
T Consensus 90 ~~~~~~~~~~iF~~~~--------------~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~- 154 (373)
T 1oxw_A 90 VPFYFEHGPQIFNPSG--------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTK- 154 (373)
T ss_dssp HHHHHHHHHHHTCCCC--------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEES-
T ss_pred HHHHHHhhHhhcCCCC--------------ccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeC-
Confidence 9999998888887642 1246789999999999999999999999999999999999999999999
Q ss_pred cchhhhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeecccccc-CCccchHHHHHHHhhcC------
Q 022802 165 DALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLERPKEQCIIVHA------ 237 (292)
Q Consensus 165 ~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~-n~P~~~ai~ea~~i~~~------ 237 (292)
|..+.++..+..+|+|++||||+|+||+|+++...++ +|+.++..|+|||+.+ |||+..|+.|++++|+.
T Consensus 155 --~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~-~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~ 231 (373)
T 1oxw_A 155 --SNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFAS 231 (373)
T ss_dssp --SSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTT
T ss_pred --CCCCCCCccCchHHHHHHHHccCCcCcCcEEeeccCC-CCcccceeeecCcccccCChHHHHHHHHHHHhccCccccc
Confidence 8766666778899999999999999999999975421 2543445899999999 99999999999988752
Q ss_pred ----------CCCCCcccCcc
Q 022802 238 ----------MPPNGAGLNGH 248 (292)
Q Consensus 238 ----------~~s~gtg~~~~ 248 (292)
++|+|||..|.
T Consensus 232 ~~~~~~~~~~vvSlGTG~~~~ 252 (373)
T 1oxw_A 232 IRSLNYKKMLLLSLGTGTTSE 252 (373)
T ss_dssp STTCCGGGEEEEEECCCCBCT
T ss_pred ccccccCceEEEEecCCCCCC
Confidence 45899998653
|
| >4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} | Back alignment and structure |
|---|
| >3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* | Back alignment and structure |
|---|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 292 | ||||
| d1oxwa_ | 360 | c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan | 8e-43 |
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Score = 148 bits (373), Expect = 8e-43
Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 20/245 (8%)
Query: 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTM 67
G+ +TVLSIDGGG++GIIP TIL FLE +LQ++D +AR+ADYFD++ GTSTGGL+ M
Sbjct: 2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAM 61
Query: 68 LTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIR 127
++ PN++ RP AAK+I FYFEH P+IF + + P YDGKY+
Sbjct: 62 ISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQ--------------ILGPKYDGKYLM 107
Query: 128 SLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTS 187
+ +E L + + LT ++I +FDIK +PVIF+ ++ +A++ DI T+
Sbjct: 108 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNL---ANSPELDAKMYDISYSTA 164
Query: 188 AAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAAN-DPVLERPKEQCIIVHAMPPNGAGLN 246
AAPTY P H+FVT S + F+L+DG VA DP L + P + +
Sbjct: 165 AAPTYFPPHYFVTNTSNGDEY-EFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRS 223
Query: 247 GHIME 251
+ +
Sbjct: 224 LNYKK 228
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 292 | |||
| d1oxwa_ | 360 | Patatin {Heartleaf nightshade (Solanum cardiophyll | 100.0 | |
| d1cjya2 | 580 | Cytosolic phospholipase A2 catalytic domain {Human | 96.6 |
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00 E-value=4.8e-42 Score=312.96 Aligned_cols=211 Identities=47% Similarity=0.838 Sum_probs=183.3
Q ss_pred CCceEEEEEcCCchhhHHHHHHHHHHHHHhcccCC-CCCccccccceEeecChHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 022802 9 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNF 87 (292)
Q Consensus 9 ~~~~~iL~ldGGG~rG~~~~gvL~~L~e~~~~~~g-~~~~l~~~~d~i~GtSaGaiia~~la~~~~~~~~~~~~~~~~~~ 87 (292)
|+.++||||||||+||++++|||++|++++.+..+ .++++.+.||+|+|||+|||+|++++.+.+...+.+..+++.+.
T Consensus 2 ~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~ 81 (360)
T d1oxwa_ 2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPF 81 (360)
T ss_dssp CSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 68899999999999999999999999999876554 46788999999999999999999999998777777888899988
Q ss_pred HHhhCCCCcCCCCCCCchhHHHHHhhhcccCCCCChHHHHHHHHHHhcccchhhccCceEEeeeecCCCCcEEeeCCcch
Q 022802 88 YFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDAL 167 (292)
Q Consensus 88 ~~~~~~~if~~~~~~~~~~~~~~~l~~~~~~~~~d~~~l~~~l~~~l~~~~l~~~~~~l~I~at~l~~~~~~~f~~~~~~ 167 (292)
|.+....+|.... .+.++.|+.+.+++++++.|++.++.+..+++.++++++.++++++|++ +
T Consensus 82 ~~~~~~~~f~~~~--------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~ 144 (360)
T d1oxwa_ 82 YFEHGPQIFNPSG--------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTK---S 144 (360)
T ss_dssp HHHHHHHHTCCCC--------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEES---S
T ss_pred HHhhcchhhhccc--------------cccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEec---c
Confidence 8777666665433 2346799999999999999999999999999999999999999999999 7
Q ss_pred hhhccccCchhHHHHHhhhccCCCCCCceEEeccCCCCCCcccceeecccccc-CCccchHHHHHHHhhcC
Q 022802 168 QVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVLERPKEQCIIVHA 237 (292)
Q Consensus 168 ~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~-n~P~~~ai~ea~~i~~~ 237 (292)
....+...+..+|+|++||||+|++|||+++.++.. .|....+.|+|||+.. |||...|+.|+..+|+.
T Consensus 145 ~~~~~~~~~~~l~~a~~ASsA~P~~F~p~~~~~~~~-~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~ 214 (360)
T d1oxwa_ 145 NLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATRLAQK 214 (360)
T ss_dssp STTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTT
T ss_pred ccccCCcccchHHHhhhhhhcCCCCCCCEEEecccC-CCCceeEEecccchhhccCchHHHHHHHHHhccc
Confidence 766667788999999999999999999999987643 2333456799999976 58999999999999874
|
| >d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|