BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022803
         (292 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
 pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
          Length = 313

 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 157/277 (56%), Gaps = 28/277 (10%)

Query: 43  RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 102
           RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY  
Sbjct: 37  RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 96

Query: 103 SLPDDAFLECFEVT------------EESAVQG--SSRRPSVEA------------SLYN 136
             P   +L     +            EE+A+ G   + R   EA            +L +
Sbjct: 97  RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLAD 156

Query: 137 YIRMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKML 196
           Y+ +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKI+S  GPL + +  VPK+L
Sbjct: 157 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLL 216

Query: 197 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 256
           S L K+WAP AF ISFKLETD  I++ +A  A + Y    VVAN L SR+  V++VT + 
Sbjct: 217 SPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDS 276

Query: 257 --KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 291
             K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct: 277 ETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313


>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
 pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
          Length = 232

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 22/202 (10%)

Query: 47  CVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPD 106
            VTSGGT+  ++   VR I N S+GH G   TE L+  GY V  +  +   +P     P+
Sbjct: 7   LVTSGGTSEAID--SVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPH--PN 62

Query: 107 DAFLECFEVTEESAVQGSSRRPSVEASLYNYIRMLQMIAVSSRSLGPCSMFYLAAAVSDF 166
            +  E    T++  ++   R       + +Y  ++   AVS  +    +      A S+ 
Sbjct: 63  LSIREITN-TKDLLIEXQER-------VQDYQVLIHSXAVSDYTPVYXTGLEEVQASSNL 114

Query: 167 YVPWKSMAEH--KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETD-AEILLE 223
              + S   H  KI S      + L + PK++S L KEW P    I FKL  D  E  L 
Sbjct: 115 K-EFLSKQNHQAKISSTDEVQVLFLKKTPKIIS-LVKEWNPTIHLIGFKLLVDVTEDHL- 171

Query: 224 KADMARK---KYGMHAVVANEL 242
             D+ARK   K     ++AN+L
Sbjct: 172 -VDIARKSLIKNQADLIIANDL 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,867,930
Number of Sequences: 62578
Number of extensions: 289254
Number of successful extensions: 628
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 5
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)