BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022804
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 13 VQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVSEEQKLDW 70
+ +INHG+ + L+E++K E FF L EEK+K Q +G+G + +L+W
Sbjct: 79 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 138
Query: 71 SDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMR 130
D F+ P R ++ K P E Y+ ++ LA + ++ L ++ + +
Sbjct: 139 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 198
Query: 131 DL---FSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWV 187
+ + M++NYYP CPQP+ +G H+D ALT +L + GLQ+ +G+WV
Sbjct: 199 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 257
Query: 188 PVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS-ELGPAP 246
K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+S A F D L P P
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 317
Query: 247 SLIGPSNPAIF 257
++ +PA F
Sbjct: 318 EMVSVESPAKF 328
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 13 VQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVSEEQKLDW 70
+ +INHG+ + L+E++K E FF L EEK+K Q +G+G + +L+W
Sbjct: 80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 139
Query: 71 SDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMR 130
D F+ P R ++ K P E Y+ ++ LA + ++ L ++ + +
Sbjct: 140 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
Query: 131 DL---FSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWV 187
+ + M++NYYP CPQP+ +G H+D ALT +L + GLQ+ +G+WV
Sbjct: 200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 258
Query: 188 PVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS-ELGPAP 246
K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+S A F D L P P
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318
Query: 247 SLIGPSNPAIF 257
++ +PA F
Sbjct: 319 EMVSVESPAKF 329
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 9/251 (3%)
Query: 14 QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADNHEGFGQLFVVSEEQKLDWS 71
+INHG+ + L E++K E FF L EEK+K Q +G+G + +L+W
Sbjct: 81 HLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWE 140
Query: 72 DMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRD 131
D F+ P R ++ K P E Y+ ++ LA + ++ L ++ + +
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK 200
Query: 132 LFSDGVQSM----RMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWV 187
G++ + ++NYYP CPQP+ +G H+D ALT +L + GLQ+ +G+WV
Sbjct: 201 EVG-GLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWV 258
Query: 188 PVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS-ELGPAP 246
K +P++ V +IGD +EI+SNG Y+SI HR LVN K R+S A F D L P P
Sbjct: 259 TAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318
Query: 247 SLIGPSNPAIF 257
+ +PA F
Sbjct: 319 EXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 137/270 (50%), Gaps = 13/270 (4%)
Query: 14 QVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM 73
+++NHG+ + + ++ + +K E++ K + EG V +E DW
Sbjct: 35 ELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQAEVTDXDWEST 89
Query: 74 FYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF 133
F++ LP+ L RE ++ ++KLA +L + + L ++ +++ F
Sbjct: 90 FFLKHLPIS--NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF 147
Query: 134 --SDGVQ-SMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVK 190
S G +++ YPPCP+PD + G H+DA + +L Q D GLQ+ G+W+ V
Sbjct: 148 YGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVP 207
Query: 191 PLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLI- 249
P ++ V+N+GD +E+++NG Y+S+ HR + R S+A+FY+ D+ + PAP+L+
Sbjct: 208 PXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVE 267
Query: 250 --GPSNPAIFRRMPLEEYFKEFFARRLNGK 277
N ++ + ++Y K + + K
Sbjct: 268 KEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 21/255 (8%)
Query: 35 FFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDM--FYIAT--LPLHLR-----K 85
FF LP E KK+ V G+ F V + D D+ F+ LP R
Sbjct: 58 FFALPVETKKQYAGVKGGARGY-IPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXA 116
Query: 86 TDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYY 145
+++ P+ + + + +L +A L+++ + + DG +R+ +Y
Sbjct: 117 DNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHY 176
Query: 146 PPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQ-GRWVPVKPLPNAFVINIGDIM 204
PP P+ + H D + +T+LL ++ GL++ ++ G+W+P+ P P VINIGD +
Sbjct: 177 PPIPKDATGVRAGAHGDINTITLLLGAEEG-GLEVLDRDGQWLPINPPPGCLVINIGDXL 235
Query: 205 EIVSNGIYRSIEHRALVNSSKERLSIATFYSS-----RIDSELGPAPSLIGPSNPAIFRR 259
E ++N + S HR +VN ER + + + D E+ + + NP R
Sbjct: 236 ERLTNNVLPSTVHR-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENP---DR 291
Query: 260 MPLEEYFKEFFARRL 274
P EF +RL
Sbjct: 292 YPESITADEFLQQRL 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 39/250 (15%)
Query: 17 NHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWSDMF-Y 75
NH + L+E++ E + FF E K + + H+GF + + D+ Y
Sbjct: 32 NHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRETHDGFFPASISETAKGHTVKDIKEY 89
Query: 76 IATLPLHLRKTDLFHKLPPSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSD 135
P + ++P SLR + +Y + LA +L + +E++ FS
Sbjct: 90 YHVYP--------WGRIPDSLRANILAYYEKANTLASELLEWIET---YSPDEIKAKFSI 138
Query: 136 GVQS---------MRMNYYPPCPQPDK--VIGFSPHSDADALTILLQLDDTQGLQIRNQ- 183
+ +R+ +YPP ++ I + H D + +T+L ++ GLQ++ +
Sbjct: 139 PLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKD 197
Query: 184 GRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRAL----VNSSKERLSIATFYSSRID 239
G W+ V +INIGD ++ S+G + S HR + + +K R+S+ F
Sbjct: 198 GSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF------ 251
Query: 240 SELGPAPSLI 249
L P PS++
Sbjct: 252 --LHPHPSVV 259
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 16/164 (9%)
Query: 94 PSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF--SDGVQSMRMNYYPPC-PQ 150
P ++ E Y ++ L+ +L A AL + F D + S+ + YP P
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 151 PDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIG 201
P+ I F H D +T+L Q + Q LQ+ + ++ ++IN G
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEADDTGYLINCG 254
Query: 202 DIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 244
M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 255 SYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 16/164 (9%)
Query: 94 PSLRETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLF--SDGVQSMRMNYYPPC-PQ 150
P ++ E Y ++ L+ +L A AL + F D + S+ + YP P
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 151 PDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIG 201
P+ I F H D +T+L Q + Q LQ+ + ++ ++IN G
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEADDTGYLINCG 254
Query: 202 DIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 244
M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 255 SYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 115 LGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIG 156
+G+ A A ++ R LF++G + ++ P CP PD +G
Sbjct: 141 VGYSALATKL-----RTLFAEGTKQYYLSAAPQCPYPDASVG 177
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 8 KLIKCVQ------VINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGF 56
K +KC + ++ H + LL+ N+ K P E +KL+ D + GF
Sbjct: 136 KKLKCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGF 190
>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
Length = 342
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 49 VADNHEGFGQLFVVSEEQKLDWSDMFYIATLPLHLRKTDLFHKLPPSLRETLESYSAEMK 108
V + EG F+VS + L+W Y L TDLF P +R +E AE++
Sbjct: 82 VIEESEGITDRFLVSPAEALEW----YEKGAALEFDFTDLFI---PQVRRWIEKLKAELR 134
Query: 109 KLAMTILGHMAKALRMDG 126
A T + A + G
Sbjct: 135 LPAGTSSKAIVYAAKNGG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,580,386
Number of Sequences: 62578
Number of extensions: 346771
Number of successful extensions: 862
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 13
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)