BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022805
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO1 PE=2 SV=1
Length = 587
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 13/188 (6%)
Query: 109 FGLREDLGIHHIVVND-WDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFE 167
F L D HH ++ D W R ++ + +S+P+VL P LAP G H+ H +T T E
Sbjct: 393 FVLPPDTDCHHFILEDNWGR-LELPYGSIFLSIPTVLDPSLAPEGHHIFHIFT--TSSIE 449
Query: 168 LWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRG 227
W+GL + E KK + E+I R +E+ L PG +D +K VGTP TH+RFL R+ G
Sbjct: 450 NWEGLSHKEYEEKK-ELVADEIITR-LEKKLFPGL-KDSVVLKEVGTPKTHRRFLARDSG 506
Query: 228 TYGPA---IQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS---VS 281
TYGP + G P ++T I LYC GDS FPG GV AVA SG + A+ + + +
Sbjct: 507 TYGPMPRKVPKGLLGMPFNTTAINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGIE 566
Query: 282 QHSELLDA 289
+ + +LDA
Sbjct: 567 KKAPVLDA 574
>sp|Q9M9Y8|CRTSO_ARATH Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana
GN=CRTISO PE=2 SV=2
Length = 595
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 114 DLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLD 173
D HH V+ D + ++ + +S+P++L LAP G+H+LH +T T E W+GL
Sbjct: 406 DTDCHHFVLEDDWKNLEEPYGSIFLSIPTILDSSLAPDGRHILHIFT--TSSIEDWEGLP 463
Query: 174 PRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI 233
P+ EY+ K + + I + +E+ L PG S K VGTP TH+RFL R++GTYGP
Sbjct: 464 PK--EYEAKKEDVAARIIQRLEKKLFPGLS-SSITFKEVGTPRTHRRFLARDKGTYGPMP 520
Query: 234 QA---GKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279
+ G P ++T I LYC GDS FPG GV AVA SG + A+ + +
Sbjct: 521 RGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 569
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO2 PE=2 SV=1
Length = 587
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 106/188 (56%), Gaps = 13/188 (6%)
Query: 109 FGLREDLGIHHIVVND-WDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFE 167
F L D HH ++ D W R ++ + +S+P+VL P LAP G H+ H +T T E
Sbjct: 393 FVLPPDTDCHHFILEDNWGR-LELPYGSIFLSIPTVLDPSLAPEGHHIFHIFT--TSSIE 449
Query: 168 LWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRG 227
W+GL + E KK + E+I R +E+ L PG +D +K VGTP TH+RFL R+ G
Sbjct: 450 NWEGLSHKEYEEKK-ELVADEIITR-LEKKLFPGL-KDSVVLKEVGTPKTHRRFLARDSG 506
Query: 228 TYGPA---IQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS---VS 281
TYGP + G P ++T I LYC GDS FPG GV AVA SG + A+ + +
Sbjct: 507 TYGPMPRKVPKGLLGMPFNTTAINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFE 566
Query: 282 QHSELLDA 289
+ + +LDA
Sbjct: 567 KKAPVLDA 574
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
PE=2 SV=1
Length = 615
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 102/182 (56%), Gaps = 11/182 (6%)
Query: 114 DLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLD 173
D HH V+ D ++ + +S+P+VL LAP G H+LH +T T E W+G+
Sbjct: 426 DTDCHHFVLEDDWSNLEVPYGSIFLSIPTVLDSSLAPEGNHILHIFT--TSSIEDWQGMS 483
Query: 174 PRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI 233
+ E KK + E+I R +E+ L PG + +K VGTP TH+R+L R+ GTYGP
Sbjct: 484 QKDYEKKK-ELVADEIISR-LEKKLFPGL-QSSIVLKEVGTPKTHRRYLARDSGTYGPMP 540
Query: 234 QA---GKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSELL 287
Q G P ++T I LYC GDS FPG GV AVA SG + A+ + + + Q S +L
Sbjct: 541 QGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGLEQKSPIL 600
Query: 288 DA 289
DA
Sbjct: 601 DA 602
>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum
GN=CRTISO PE=1 SV=1
Length = 615
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 13/183 (7%)
Query: 114 DLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLD 173
D HH V+ D ++ + +S+P+VL LAP G H+LH +T T E W+GL
Sbjct: 426 DTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFT--TSSIEDWEGLS 483
Query: 174 PRSAEYKK-LKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPA 232
P+ E KK + AER I +E+ L PG + K VGTP TH+R+L R+ GTYGP
Sbjct: 484 PKDYEAKKEVVAER---IISRLEKTLFPGL-KSSILFKEVGTPKTHRRYLARDSGTYGPM 539
Query: 233 IQA---GKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSEL 286
+ G P ++T I LYC GDS FPG GV AVA SG + A+ + + + S++
Sbjct: 540 PRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDV 599
Query: 287 LDA 289
LD+
Sbjct: 600 LDS 602
>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2
Length = 580
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 113 EDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGL 172
ED + H D G+ + + ++ + +PS L P LAPPG HV+ +T T P+ L G
Sbjct: 410 EDTLLLHQAFEDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLFTQYT-PYTLAGG- 467
Query: 173 DPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-YGP 231
++ K ++ ++ +E A PGF R ++ TP +R R G +
Sbjct: 468 ---KVWNEQEKNTYADKVFDCIE-AYAPGFKRSVLARDIL-TPPDLERIFRLPGGNIFHG 522
Query: 232 AIQAGKETF----PGHS---TPIPQLYCCGDSTFPGIGVPAVAASGA 271
A+ + F P HS P+ LY CG PG GV A A
Sbjct: 523 AMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNA 569
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1
Length = 581
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 113 EDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGL 172
ED + H D G+ + + ++ + +PS L P LAP G HV+ +T T P+ L G
Sbjct: 411 EDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAPTGCHVVSLFTQYT-PYTLAGG- 468
Query: 173 DPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPA 232
++ K ++ ++ +E A PGF R ++G + + L R G G
Sbjct: 469 ---KVWDEQKKNTYADKVFDCIE-AYAPGFKRS-----VLGRDILTPQDLERIFGLPGGN 519
Query: 233 IQAGKETF---------PGHS---TPIPQLYCCGDSTFPGIGVPAVAASGA 271
I G + P HS P+ LY CG PG GV A A
Sbjct: 520 IFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNA 570
>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 113 EDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGL 172
ED + H D G+ + + ++ + +PS L P LAPPG HV+ +T T P+ L G
Sbjct: 411 EDTLLVHQAFEDTLDGLPSKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYT-PYTLAGG- 468
Query: 173 DPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPA 232
A ++ + ++ ++ +E A PGF ++ P + F + A
Sbjct: 469 ---KAWDEQQRNTYADRVFDCIE-AYAPGFKGSVVGRDILTPPDLERVFGLPGGNIFHCA 524
Query: 233 IQAGKETF----PGHS---TPIPQLYCCGDSTFPGIGVPAVAASGA 271
+ + F P HS +P+ LY CG PG GV A A
Sbjct: 525 MSLDQLYFARPVPLHSSYCSPLRGLYLCGSGAHPGGGVMGAAGRNA 570
>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2
Length = 581
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 113 EDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGL 172
ED + H D G+ + + V+ + +PS L P LAPPG HV+ +T P+ L G
Sbjct: 411 EDTLLLHQAFEDAMDGLPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQ-YMPYTLAGG- 468
Query: 173 DPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPA 232
A ++ + ++ ++ +E PGF ++ P + F + A
Sbjct: 469 ---KAWDEQERDAYADRVFDCIE-VYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCA 524
Query: 233 IQAGKETF-------PGHSTPIPQLYCCGDSTFPGIGVPAVAASGA 271
+ + F G+ P+ LY CG PG GV A A
Sbjct: 525 MSLDQLYFARPVPLHSGYRCPLQGLYLCGSGAHPGGGVMGAAGRNA 570
>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 113 EDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGL 172
ED + H D G+ + + ++ + +PS L P LAP G HV+ +T T P+ L G
Sbjct: 411 EDTLLLHQAFEDAMDGLPSHRPIIELCIPSSLDPPLAPSGCHVVSLFTQYT-PYTLAGG- 468
Query: 173 DPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPA 232
A ++ + ++ ++ VE PGF ++ P + F + A
Sbjct: 469 ---KAWDEQERDAYADRVFDCVE-VYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCA 524
Query: 233 IQAGKETF-------PGHSTPIPQLYCCGDSTFPGIGVPAVAASGA 271
+ + F G+ P+ LY CG PG GV A A
Sbjct: 525 MSLDQLYFARPVPLHSGYRCPLQGLYLCGSGAHPGGGVMGAAGRNA 570
>sp|P17054|CRTI_RHOCB Phytoene desaturase (neurosporene-forming) OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=crtI PE=1 SV=1
Length = 524
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 111 LREDLGIHHIVV---------NDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTP 161
+ +D+G H +VV + + +G A+ + + PSV P AP G + +P
Sbjct: 327 MWKDVGHHTVVVGPRYKEHVQDIFIKGELAEDMSLYVHRPSVTDPTAAPKGDDTFYVLSP 386
Query: 162 GTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQ-R 220
G+D S E +K KA+ + + +E L PG + +K ++V TP T + R
Sbjct: 387 -VPNLGFDNGVD-WSVEAEKYKAK----VLKVIEERLLPGVA-EKITEEVVFTPETFRDR 439
Query: 221 FLRRNRGTYG--PAIQAGKETFPGH-STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277
+L + P I P + S + LY G T PG GVP+V SG +VA +
Sbjct: 440 YLSPLGAGFSLEPRILQSAWFRPHNASEEVDGLYLVGAGTHPGAGVPSVIGSGELVAQMI 499
>sp|Q4L975|CRTN_STAHJ Dehydrosqualene desaturase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=crtN PE=3 SV=2
Length = 501
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 29/193 (15%)
Query: 111 LREDLGIHHIV--------VNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPG 162
LR+ L +H++V ++D G D + + PSV LAP + ++ P
Sbjct: 320 LRDKLHVHNVVFARDFRGNIDDIFSGKMPDDPSLYLYFPSVEDEALAPKDQTGMYVLMPV 379
Query: 163 TE--PFEL-WKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQ 219
E E+ W DP E K +VI+ +E R + V TPL
Sbjct: 380 PELKTGEIDWN--DPNMVEKAK------DVIYNKLETIEALKDIRQDVVSETVFTPLD-- 429
Query: 220 RFLRRNRGTYGPAI-------QAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAI 272
F R +G A Q+ P S LY G ST PG GVP V S I
Sbjct: 430 -FESRYNAKFGSAFGLMPTLTQSNYYRPPNVSRDYKDLYFAGASTHPGAGVPIVLTSAKI 488
Query: 273 VANSLVSVSQHSE 285
A +++ +H +
Sbjct: 489 TAEAMLEDIEHGK 501
>sp|P06108|P49_STRLI Protein p49 OS=Streptomyces lividans GN=p49 PE=4 SV=1
Length = 469
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 131 ADQNVVLISV-PSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEV 189
A + LI+V PSV P AP GKHV AY G P W G + ++
Sbjct: 327 APERPFLITVQPSVADPTRAPAGKHVFWAY--GHVP-NGWNG-------------DLTDA 370
Query: 190 IWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKET---------- 239
+ R +ER PGF RD+ + P RN G I +G +
Sbjct: 371 MERQLER-FAPGF-RDRVLARATAGP---AELAARNANYVGGDISSGAVSGLQLLLRPKI 425
Query: 240 --FPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVA 274
FP +STP P ++ C +T PG GV ++ A A
Sbjct: 426 SLFP-YSTPHPAVFICSSATPPGPGVHGMSGHNAAKA 461
>sp|Q5BLE8|RETST_DANRE Putative all-trans-retinol 13,14-reductase OS=Danio rerio GN=retsat
PE=2 SV=1
Length = 607
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 151 PGKHVLHAYT-PGTEPFELWKG--LDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKC 207
PGK L + E FE WK + RS +YK+LK I AV + P +D+
Sbjct: 450 PGKSTLTVVSFANYEWFEEWKDDKVKNRSTDYKQLKELFINYILEAVTE-IYPKI-KDRI 507
Query: 208 DVKLVGTPLTHQRFLRRNRG-TYG-----PAIQAGKETFPGHSTPIPQLYCCG-DSTFPG 260
+ GTP+T+Q ++ RG YG P A TPI LY G D G
Sbjct: 508 EYVDAGTPITNQHYIAAPRGEIYGADHGIPRFSAELNATIRAQTPIKNLYLTGQDLMLCG 567
Query: 261 IGVPAVAASGAIVANSLV 278
A A +GA+ S++
Sbjct: 568 F---AGALTGALTCGSVI 582
>sp|P33634|YFIE_ECOLI Uncharacterized HTH-type transcriptional regulator YfiE
OS=Escherichia coli (strain K12) GN=yfiE PE=4 SV=2
Length = 293
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 32 QDWKKLLDAILPLSATATALPPLSIR-----GDLGVLS--TVAARYAPSLLKSFIQMGPQ 84
++ KKLL I L+ L + + G+L V+S T+ + P +L+ F Q P+
Sbjct: 59 REGKKLLPHIYELTRVMDTLREAAKKESDPDGELRVVSGETLLSYRMPQVLQRFRQRAPK 118
Query: 85 GALGATKLLRPFSEIVDSLELEDPFGLREDLGIHHIVVND--WDRGVDADQNVVLISVPS 142
L L I D+L L D D+G+ + V ND +R +Q++VL++ P
Sbjct: 119 VRLSLQSL--NCYVIRDAL-LNDE----ADVGVFYRVGNDDALNRRELGEQSLVLVASPQ 171
Query: 143 VLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERS------EVIWRAVER 196
+ D PG+H ++ EP +++ + + +++ E + E I R V
Sbjct: 172 IADVDFTEPGRHNACSFIIN-EPQCVFRQIFESTLRQRRITVENTIELISIESIKRCVAA 230
Query: 197 ALGPGF 202
+G +
Sbjct: 231 NIGVSY 236
>sp|Q6G6B0|CRTP_STAAS Diapolycopene oxygenase OS=Staphylococcus aureus (strain MSSA476)
GN=crtP PE=3 SV=1
Length = 497
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGIPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q8NUQ3|CRTP_STAAW Diapolycopene oxygenase OS=Staphylococcus aureus (strain MW2)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.7 bits (86), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGFVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGIPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|P22871|CRTI_ESCVU Phytoene desaturase (lycopene-forming) OS=Escherichia vulneris
GN=crtI PE=3 SV=1
Length = 492
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 131 ADQNVVLISVPSVLSPDLAPPGKHVLHAYTP----GTEPFELWKGLDPR-------SAEY 179
AD + + P V P LAPPG + P G P + W P+ E
Sbjct: 345 ADDFSLYLHSPCVTDPSLAPPGCASFYVLAPVPHLGNAPLD-WAQEGPKLRDRIFDYLEE 403
Query: 180 KKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKET 239
+ + RS+++ +R P D D L G+ + + L ++ + P
Sbjct: 404 RYMPGLRSQLV---TQRIFTPADFHDTLDAHL-GSAFSIEPLLTQS-AWFRPH------- 451
Query: 240 FPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
+ I LY G T PG G+P V AS A+ ++
Sbjct: 452 --NRDSDIANLYLVGAGTHPGAGIPGVVASAKATASLMI 488
>sp|Q6GDN5|CRTP_STAAR Diapolycopene oxygenase OS=Staphylococcus aureus (strain MRSA252)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q53589|CRTP_STAAE Diapolycopene oxygenase OS=Staphylococcus aureus (strain Newman)
GN=crtP PE=3 SV=2
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q5HCY6|CRTP_STAAC Diapolycopene oxygenase OS=Staphylococcus aureus (strain COL)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q2FV57|CRTP_STAA8 Diapolycopene oxygenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=crtP PE=1 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q2FDU3|CRTP_STAA3 Diapolycopene oxygenase OS=Staphylococcus aureus (strain USA300)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crtN PE=3 SV=1
Length = 502
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + +V
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMV 495
>sp|Q7A3D9|CRTP_STAAN Diapolycopene oxygenase OS=Staphylococcus aureus (strain N315)
GN=crtP PE=1 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q99R73|CRTP_STAAM Diapolycopene oxygenase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=crtP PE=1 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|P48537|CRTI_CERNC Phytoene desaturase OS=Cercospora nicotianae GN=PDH1 PE=3 SV=1
Length = 621
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 123 NDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKL 182
DW + + +L ++ S + DL P ++H T ++ LD R A
Sbjct: 426 QDWPAMISLARKTILSTIQSRTNVDLTPL---IIHESTNSPLSWKQTFNLD-RGAILGLS 481
Query: 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPG 242
+ + + +R RA PG D +L+ +F G G A + + F G
Sbjct: 482 HSFFNVLCFRPTTRARKPG----AFDAQLL-------KF-----GVLGRAAEVIIDAFRG 525
Query: 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277
I LY G S PG GVP A GA+VA +
Sbjct: 526 RGKDIKGLYMVGASAHPGTGVPICLAGGALVAEQI 560
>sp|P54981|CRTI_STRGR Phytoene dehydrogenase OS=Streptomyces griseus GN=crtI PE=3 SV=1
Length = 507
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 64/166 (38%), Gaps = 49/166 (29%)
Query: 136 VLISVPSVLSPDLAPPGKHVLH--AYTPGTE---PFELWKGLDPRSAEYKKLKAERSE-- 188
+LI+ P+ P LAPPGKH+ + A P TE W+ L PR + + ER E
Sbjct: 351 LLITRPTATDPSLAPPGKHLHYVLAPCPNTEVGPGVREWRELGPRYRDELLAELERREMP 410
Query: 189 --------------VIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRN--RGTYGPA 232
V W A A G FS + T F RN RGT A
Sbjct: 411 GLGAAIEEEGLVTPVDWTAQGHAAGTPFS-------VAHTFPQTGPFRPRNLVRGTVN-A 462
Query: 233 IQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
+ AG CG T PG+GVP V SG + A +
Sbjct: 463 VLAG----------------CG--TTPGVGVPTVLISGKLAAERIT 490
>sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2)
GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MSSA476) GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315)
GN=crtN PE=1 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Newman)
GN=crtN PE=1 SV=2
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC
8325) GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain USA300)
GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q5HCY9|CRTN_STAAC Dehydrosqualene desaturase OS=Staphylococcus aureus (strain COL)
GN=crtN PE=3 SV=1
Length = 502
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP GK ++ P T + G+D + L + E+I+R +
Sbjct: 353 IYVYVPAVADKSLAPEGKTGIYVLMP-TPELKTGSGIDWSD---EALTQQIKEIIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|P54982|CRTI_PHYB8 Phytoene desaturase OS=Phycomyces blakesleeanus (strain ATCC 8743b
/ FGSC 10004 / NBRC 33097 / NRRL 1555) GN=carB PE=3 SV=1
Length = 583
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 138 ISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERA 197
+++PS + P APPGK + P K + +Y + +++ +ER
Sbjct: 358 VNLPSRIDPTAAPPGKDSMIVLVPIGH----MKSKTNEAEDYTMIVKRARKMVLEVLERR 413
Query: 198 LGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-------------YGPAIQAGKETFPGHS 244
LG D + + V P Q+ RG+ + P+ Q +
Sbjct: 414 LGLTNFIDLVEHEEVNDPSIWQKKFNLWRGSILGLSHDVLQVLWFRPSTQDSTGRYKN-- 471
Query: 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277
L+ G ST PG GVP V A + ++ +
Sbjct: 472 -----LFFVGASTHPGTGVPIVLAGSKLTSDQV 499
>sp|Q3AUZ9|CH602_SYNS9 60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2
PE=3 SV=1
Length = 562
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 79 IQMGPQG-------ALGATKLLRPFSEIVDSLELEDPFGLREDLG---IHHIVVNDWDRG 128
+ +GP+G GA ++ I +ELEDPF E+LG I + D+
Sbjct: 28 VTIGPKGRNVVLEKKFGAPDIVNDGDTIARDIELEDPF---ENLGAKLIQQVASRTKDKA 84
Query: 129 VDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSE 188
D + +VL+ + G L G P EL +G++ +A+ A RS+
Sbjct: 85 GDG------TTTATVLAQAMVREG---LRNTAAGASPVELRRGMEKAAAQVVAGLASRSQ 135
Query: 189 VI 190
+
Sbjct: 136 AV 137
>sp|Q2YWE5|CRTP_STAAB Diapolycopene oxygenase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crtP PE=3 SV=1
Length = 497
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 212 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 267
V TP ++ R NRG YG K F S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFTKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 268 ASGAIVANSL 277
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|P54980|CRTI_RHOS4 Phytoene desaturase (neurosporene-forming) OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=crtI PE=3 SV=2
Length = 518
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 110 GLREDLGIHHIVVND----------WDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAY 159
G+ D+G HH +VN + +G A + I PS+ P +AP G +A
Sbjct: 327 GMWPDVG-HHTIVNAPRYKGLVEDIFLKGKLAKDMSLYIHRPSITDPTVAPEGDDTFYAL 385
Query: 160 TPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQ 219
+P K P +++ + E + +E+++ PG ++ LV TP T
Sbjct: 386 SP----VPHLKQAQP--VDWQAVAEPYRESVLEVLEQSM-PGIG-ERIGPSLVFTPET-- 435
Query: 220 RFLRRNRGTYG------PAIQAGKETFPGH-STPIPQLYCCGDSTFPGIGVPAVAASGAI 272
F R +G P I P + S + L+ G T PG GVP V S +
Sbjct: 436 -FRDRYLSPWGAGFSIEPRILQSAWFRPHNISEEVANLFLVGAGTHPGAGVPGVIGSAEV 494
Query: 273 VAN 275
+A
Sbjct: 495 MAK 497
>sp|Q6GDN7|CRTN_STAAR Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MRSA252) GN=crtN PE=3 SV=1
Length = 502
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195
+ + VP+V LAP G+ ++ P T + G+D + L + +VI+R +
Sbjct: 353 IYVYVPAVADKSLAPQGQTGIYVLMP-TPELKTGSGIDWSD---EALTDQIKDVIYRKL- 407
Query: 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-------QAGKETFPGHSTPIP 248
A F K + + T T F + +G A Q+ S
Sbjct: 408 -ATIEVFEDIKSHI-VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYK 465
Query: 249 QLYCCGDSTFPGIGVPAVAASGAIVANSLV 278
LY G ST PG GVP V S I + ++
Sbjct: 466 DLYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|P17059|CRTD_RHOCB Methoxyneurosporene dehydrogenase OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtD PE=3 SV=2
Length = 494
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 197 ALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETF--PGHSTPIPQLYCCG 254
A+G FS D L L +RF YG + + TF P T + LY G
Sbjct: 403 AMGLTFSPDPETRALTTPALLSRRFPGSLGAIYGGSPEGTLATFRRPLARTGLKGLYLAG 462
Query: 255 DSTFPGIGVPAVAASGAIVANSLVS 279
T PG GVP SG A +L++
Sbjct: 463 GGTHPGAGVPMALTSGTHAARALLA 487
>sp|Q5NKV6|ICAM1_MACMU Intercellular adhesion molecule 1 OS=Macaca mulatta GN=ICAM1 PE=2
SV=1
Length = 532
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 186 RSEVIWRAVERALGPGFSRDKCDVKL-VGTPLTHQRFLRRNRGTYGPAIQA----GKETF 240
R++ + +A G FS C L V L H+ R R YGP + G T+
Sbjct: 353 RAQFLLKATPEDNGRSFS---CSATLEVAGQLVHKNQTRELRVLYGPRLDEKDCPGNWTW 409
Query: 241 PGHS----------TPIPQLYCCGDSTFP 259
P +S P+PQL C D TFP
Sbjct: 410 PENSQQTPMCQAWGNPLPQLKCLKDGTFP 438
>sp|P05362|ICAM1_HUMAN Intercellular adhesion molecule 1 OS=Homo sapiens GN=ICAM1 PE=1
SV=2
Length = 532
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 186 RSEVIWRAVERALGPGFSRDKCDVKL-VGTPLTHQRFLRRNRGTYGPAIQA----GKETF 240
R++++ +A G FS C L V L H+ R R YGP + G T+
Sbjct: 353 RAQLLLKATPEDNGRSFS---CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW 409
Query: 241 PGHS----------TPIPQLYCCGDSTFP 259
P +S P+P+L C D TFP
Sbjct: 410 PENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>sp|Q5P7J0|PDXA_AROAE 4-hydroxythreonine-4-phosphate dehydrogenase OS=Aromatoleum
aromaticum (strain EbN1) GN=pdxA PE=3 SV=1
Length = 326
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 131 ADQNVVLISVPSVLSPDLAPPGKHVLHAYTPG----TEPFELWKGLDPRSAEYKKLKAER 186
A ++ L +VP ++P L +LHA G P L GL+P + E + E
Sbjct: 157 ATTHLPLAAVPGAITPALLDETLRILHADLAGRFGLAAPRILVAGLNPHAGEGGHMGREE 216
Query: 187 SEVIWRAVERALGPGF 202
+VI +ER G G
Sbjct: 217 IDVIAPVLERLRGEGM 232
>sp|A8G9V4|DGTP_SERP5 Deoxyguanosinetriphosphate triphosphohydrolase OS=Serratia
proteamaculans (strain 568) GN=dgt PE=3 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 41 ILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIV 100
+ PL A L+ ++ V A +L F Q G ALG TKLL PF IV
Sbjct: 54 VFPLERNAAVRSRLTHSMEV---QQVGRHIAKEILNRFKQDGRVDALGLTKLLDPFESIV 110
Query: 101 D 101
+
Sbjct: 111 E 111
>sp|A7HDG9|VATA_ANADF V-type ATP synthase alpha chain OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=atpA PE=3 SV=1
Length = 578
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 35 KKLLDAILPLSATATALPPLSIRGDLGVLSTVAARYAPSLLKSFIQMGPQGALGATKLLR 94
+++LD P+SA TA+ P VL A++A + + ++ G +G
Sbjct: 207 QRVLDCFFPVSAGGTAMVPGGFGTGKTVLEQSLAKHAAADVVVYVGCGERG--------N 258
Query: 95 PFSEIVDSL-ELEDPFGLREDLGIHHIVVNDWDRGVDADQNVV 136
+E++D L +LEDP LG +VVN + V A + +
Sbjct: 259 EMAEVLDELPKLEDPRSGGPLLGRTVLVVNTSNMPVAAREASI 301
>sp|Q5NKV9|ICAM1_GORGO Intercellular adhesion molecule 1 OS=Gorilla gorilla gorilla
GN=ICAM1 PE=2 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 186 RSEVIWRAVERALGPGFSRDKCDVKL-VGTPLTHQRFLRRNRGTYGPAIQA----GKETF 240
R++ + +A G FS C L V L H+ R R YGP + G T+
Sbjct: 353 RTQFLLKATPEDNGRSFS---CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW 409
Query: 241 PGHS----------TPIPQLYCCGDSTFP 259
P +S P+P+L C D TFP
Sbjct: 410 PENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>sp|Q64FG0|RETST_MACFA All-trans-retinol 13,14-reductase OS=Macaca fascicularis GN=RETSAT
PE=2 SV=1
Length = 610
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 135 VVLISVPSVLSPDLAP--PGKHVLHAYTPGT-EPFELWKG--LDPRSAEYKKLKAERSEV 189
++ I+ PS P PG+ + P E FE W+ R ++Y+ K E
Sbjct: 437 LLFIAFPSAKDPTWEDRFPGRSSMIMLIPSAYEWFEEWQAELKGKRGSDYETYKNSFVEA 496
Query: 190 IWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRG-TYG---------PAIQAGKET 239
+V L P K + G+PLT+Q +L RG YG P + A
Sbjct: 497 SM-SVAMKLFPQL-EGKVESVTAGSPLTNQFYLAAPRGACYGADHDLGRLHPRVMASLRA 554
Query: 240 FPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLD 288
+PIP LY G F G+ + +++++ + +S+L D
Sbjct: 555 ----QSPIPNLYLTGQDIFT-CGLVGALQGALLCSSAILKRNLYSDLKD 598
>sp|P54978|CRTI_PARSN Phytoene desaturase (lycopene-forming) OS=Paracoccus sp. (strain
N81106 / MBIC 01143) GN=crtI PE=3 SV=2
Length = 501
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 30/190 (15%)
Query: 109 FGLRE---DLGIHHIV--------VNDWDRGVDADQNVVL-ISVPSVLSPDLAPPG--KH 154
FGLRE D+ H I+ VN+ +G ++ L + P P++APPG H
Sbjct: 318 FGLREAPKDVAHHTILFGPRYKELVNEIFKGPKLAEDFSLYLHSPCTTDPEMAPPGMSTH 377
Query: 155 VLHAYTPGTEPFEL-WKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVG 213
+ A P ++ W PR A+ I ++E L P R +
Sbjct: 378 YVLAPVPHLGRADIDWAVEGPRYADR----------ILASLEERLIPNL-RANLTTTRIF 426
Query: 214 TPLTHQRFLRRNRGTYGPA--IQAGKETFPGHS--TPIPQLYCCGDSTFPGIGVPAVAAS 269
TP L + G+ I F H+ I Y G T PG G+P V S
Sbjct: 427 TPSDFASELNAHHGSAFSVEPILTQSAWFRPHNRDKTIRNFYLVGAGTHPGAGIPGVVGS 486
Query: 270 GAIVANSLVS 279
A ++S
Sbjct: 487 AKATAQVMLS 496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,069,838
Number of Sequences: 539616
Number of extensions: 5080683
Number of successful extensions: 11767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11715
Number of HSP's gapped (non-prelim): 60
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)