Query 022805
Match_columns 292
No_of_seqs 245 out of 1506
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02730 carot_isom carotene 100.0 5.7E-34 1.2E-38 280.3 23.9 157 117-280 332-491 (493)
2 KOG4254 Phytoene desaturase [C 100.0 1.5E-33 3.2E-38 265.5 15.7 162 122-291 387-556 (561)
3 TIGR02734 crtI_fam phytoene de 100.0 5.6E-32 1.2E-36 266.3 17.4 177 92-280 298-491 (502)
4 TIGR02733 desat_CrtD C-3',4' d 100.0 9.7E-30 2.1E-34 250.0 18.4 175 91-280 314-491 (492)
5 COG1233 Phytoene dehydrogenase 99.9 3.8E-22 8.2E-27 196.5 16.1 132 135-280 346-482 (487)
6 PLN02612 phytoene desaturase 98.7 6.7E-08 1.5E-12 97.3 11.5 121 136-281 420-548 (567)
7 PRK07233 hypothetical protein; 98.5 2.9E-06 6.2E-11 81.5 14.3 124 135-280 304-430 (434)
8 PF01593 Amino_oxidase: Flavin 97.9 1.8E-06 3.9E-11 81.2 -0.1 125 134-278 320-450 (450)
9 PRK11883 protoporphyrinogen ox 97.8 0.00032 6.9E-09 67.9 12.5 120 135-279 327-450 (451)
10 PLN02487 zeta-carotene desatur 97.6 0.00031 6.8E-09 70.9 9.5 90 183-285 464-557 (569)
11 TIGR02731 phytoene_desat phyto 97.5 0.00034 7.3E-09 68.2 8.0 84 182-278 362-453 (453)
12 TIGR02732 zeta_caro_desat caro 97.4 0.00057 1.2E-08 67.5 8.5 83 183-278 388-474 (474)
13 TIGR03467 HpnE squalene-associ 97.3 0.00036 7.8E-09 66.5 5.8 85 183-279 332-419 (419)
14 TIGR00562 proto_IX_ox protopor 95.8 0.045 9.8E-07 53.2 9.1 121 136-280 335-459 (462)
15 PLN02576 protoporphyrinogen ox 95.2 0.074 1.6E-06 52.4 8.3 32 248-280 455-486 (496)
16 COG1232 HemY Protoporphyrinoge 95.0 0.36 7.7E-06 47.5 12.0 158 91-278 283-443 (444)
17 COG3349 Uncharacterized conser 94.7 0.054 1.2E-06 53.5 5.4 86 183-280 375-462 (485)
18 PLN02676 polyamine oxidase 94.3 0.091 2E-06 52.2 6.3 94 184-286 379-478 (487)
19 PRK07208 hypothetical protein; 93.3 0.41 8.8E-06 47.0 8.8 123 139-281 336-461 (479)
20 PRK12416 protoporphyrinogen ox 92.8 0.33 7.2E-06 47.4 7.2 86 183-279 373-459 (463)
21 PLN02268 probable polyamine ox 90.8 0.44 9.6E-06 46.1 5.6 87 183-279 340-432 (435)
22 COG3380 Predicted NAD/FAD-depe 88.8 0.33 7.1E-06 44.8 2.7 31 248-279 299-329 (331)
23 PRK11259 solA N-methyltryptoph 87.7 1.1 2.4E-05 42.0 5.7 77 185-282 286-362 (376)
24 TIGR02734 crtI_fam phytoene de 87.0 0.99 2.1E-05 44.6 5.1 43 3-46 87-130 (502)
25 PLN02568 polyamine oxidase 86.4 0.91 2E-05 45.8 4.5 36 246-281 498-535 (539)
26 TIGR02352 thiamin_ThiO glycine 82.2 4.7 0.0001 37.0 7.0 77 185-280 260-336 (337)
27 PLN03000 amine oxidase 80.9 1.5 3.3E-05 46.6 3.5 89 184-281 524-623 (881)
28 PLN02976 amine oxidase 80.5 1.8 3.8E-05 48.5 3.9 87 184-280 1090-1185(1713)
29 PRK12842 putative succinate de 80.4 1.8 3.9E-05 43.9 3.8 39 243-281 520-567 (574)
30 COG2509 Uncharacterized FAD-de 80.2 1.3 2.8E-05 43.5 2.6 38 243-280 445-482 (486)
31 TIGR03329 Phn_aa_oxid putative 80.2 7.1 0.00015 38.3 7.8 76 186-281 319-395 (460)
32 TIGR01377 soxA_mon sarcosine o 79.6 4.5 9.7E-05 38.0 6.0 77 186-282 286-362 (380)
33 PLN02529 lysine-specific histo 77.8 1.8 3.9E-05 45.4 2.9 89 184-280 500-597 (738)
34 PRK12844 3-ketosteroid-delta-1 76.2 3.5 7.6E-05 41.7 4.5 38 243-280 503-549 (557)
35 PLN02328 lysine-specific histo 72.5 3.8 8.2E-05 43.4 3.7 88 184-280 580-678 (808)
36 PRK06134 putative FAD-binding 72.5 4.7 0.0001 41.0 4.3 38 243-280 524-570 (581)
37 PRK00711 D-amino acid dehydrog 71.8 11 0.00023 36.0 6.5 76 186-282 328-404 (416)
38 PRK12839 hypothetical protein; 71.7 5.3 0.00012 40.6 4.5 38 243-280 521-567 (572)
39 PRK07121 hypothetical protein; 70.8 4.9 0.00011 39.7 4.0 37 243-279 445-489 (492)
40 PRK07843 3-ketosteroid-delta-1 70.2 5 0.00011 40.6 3.9 37 243-279 510-555 (557)
41 PRK08274 tricarballylate dehyd 69.7 4.5 9.8E-05 39.5 3.4 37 244-280 415-460 (466)
42 TIGR02485 CobZ_N-term precorri 69.0 5.1 0.00011 38.8 3.6 37 243-279 383-428 (432)
43 PRK12845 3-ketosteroid-delta-1 66.0 6.6 0.00014 39.8 3.8 37 243-279 518-563 (564)
44 KOG0029 Amine oxidase [Seconda 65.7 8.7 0.00019 38.5 4.5 89 182-280 361-458 (501)
45 TIGR01373 soxB sarcosine oxida 65.3 33 0.00072 32.6 8.3 75 186-281 311-386 (407)
46 PRK12835 3-ketosteroid-delta-1 63.3 8.7 0.00019 39.1 4.1 38 243-280 523-569 (584)
47 PRK12837 3-ketosteroid-delta-1 63.1 7.1 0.00015 39.0 3.4 38 243-280 465-511 (513)
48 PRK12843 putative FAD-binding 62.6 9.8 0.00021 38.6 4.3 38 243-280 525-571 (578)
49 TIGR01812 sdhA_frdA_Gneg succi 62.4 5.8 0.00013 40.0 2.6 34 245-278 357-399 (566)
50 PRK12834 putative FAD-binding 61.7 8.2 0.00018 38.9 3.5 36 243-278 500-547 (549)
51 KOG1276 Protoporphyrinogen oxi 61.7 57 0.0012 32.3 8.9 30 248-278 461-490 (491)
52 TIGR03197 MnmC_Cterm tRNA U-34 61.6 35 0.00075 32.3 7.7 37 245-283 329-365 (381)
53 PRK09231 fumarate reductase fl 61.5 6.8 0.00015 39.9 2.9 37 242-278 366-411 (582)
54 PRK12409 D-amino acid dehydrog 60.8 29 0.00064 33.0 7.1 76 185-281 332-407 (410)
55 PRK08205 sdhA succinate dehydr 59.9 8.1 0.00018 39.3 3.2 35 244-278 372-415 (583)
56 COG0665 DadA Glycine/D-amino a 59.8 32 0.00069 32.2 7.0 79 186-283 291-370 (387)
57 TIGR02733 desat_CrtD C-3',4' d 59.7 20 0.00043 35.3 5.8 39 3-46 90-130 (492)
58 PRK08401 L-aspartate oxidase; 58.8 9.2 0.0002 37.6 3.3 37 243-279 319-364 (466)
59 TIGR01816 sdhA_forward succina 57.4 11 0.00023 38.2 3.6 34 245-278 351-393 (565)
60 PRK09078 sdhA succinate dehydr 57.4 9.9 0.00021 38.8 3.3 35 244-278 382-425 (598)
61 TIGR01176 fum_red_Fp fumarate 56.9 10 0.00022 38.6 3.2 37 242-278 365-410 (580)
62 PRK05675 sdhA succinate dehydr 56.3 12 0.00025 38.1 3.6 34 245-278 360-402 (570)
63 PRK08275 putative oxidoreducta 56.2 8.8 0.00019 38.7 2.7 36 243-278 365-401 (554)
64 PRK09077 L-aspartate oxidase; 56.1 11 0.00024 37.9 3.3 38 242-279 361-407 (536)
65 PRK07803 sdhA succinate dehydr 56.0 9.4 0.0002 39.2 2.9 35 244-278 402-444 (626)
66 TIGR00551 nadB L-aspartate oxi 55.8 10 0.00023 37.5 3.1 38 242-279 341-387 (488)
67 PRK06175 L-aspartate oxidase; 55.5 9.3 0.0002 37.3 2.6 38 242-279 339-385 (433)
68 PRK06263 sdhA succinate dehydr 55.4 10 0.00022 38.1 3.0 37 243-279 357-401 (543)
69 PRK05945 sdhA succinate dehydr 54.9 11 0.00025 38.1 3.3 35 244-278 367-410 (575)
70 PRK07395 L-aspartate oxidase; 54.9 7.2 0.00016 39.4 1.8 37 15-51 64-101 (553)
71 TIGR01292 TRX_reduct thioredox 54.6 13 0.00027 33.4 3.2 36 243-278 261-297 (300)
72 PRK12831 putative oxidoreducta 54.5 13 0.00028 36.6 3.6 36 243-278 422-457 (464)
73 PF01266 DAO: FAD dependent ox 54.3 8.1 0.00018 35.3 1.9 74 182-275 284-357 (358)
74 PRK10157 putative oxidoreducta 52.7 12 0.00026 36.4 2.9 33 247-279 294-333 (428)
75 PF05199 GMC_oxred_C: GMC oxid 52.4 12 0.00027 29.8 2.5 32 245-276 112-143 (144)
76 PRK06069 sdhA succinate dehydr 52.3 10 0.00022 38.4 2.4 34 245-278 369-411 (577)
77 TIGR00136 gidA glucose-inhibit 52.1 31 0.00068 35.5 5.8 30 244-274 353-383 (617)
78 PRK08958 sdhA succinate dehydr 51.3 12 0.00026 38.2 2.7 34 245-278 378-420 (588)
79 PRK04965 NADH:flavorubredoxin 51.2 15 0.00033 34.7 3.3 39 243-281 261-303 (377)
80 PRK06116 glutathione reductase 51.0 19 0.0004 35.1 4.0 38 243-280 291-328 (450)
81 PRK06481 fumarate reductase fl 50.9 12 0.00027 37.2 2.8 37 243-279 457-501 (506)
82 PRK08641 sdhA succinate dehydr 50.4 13 0.00028 37.9 2.8 36 243-278 364-407 (589)
83 PLN00128 Succinate dehydrogena 49.5 15 0.00033 37.8 3.2 34 245-278 421-463 (635)
84 TIGR01813 flavo_cyto_c flavocy 49.1 9.1 0.0002 37.0 1.5 14 244-257 400-413 (439)
85 PRK08071 L-aspartate oxidase; 48.9 14 0.00031 36.9 2.8 36 243-278 341-385 (510)
86 PLN02507 glutathione reductase 48.5 19 0.00042 35.8 3.7 39 242-280 325-363 (499)
87 PRK12810 gltD glutamate syntha 48.5 19 0.00041 35.5 3.6 36 244-279 427-462 (471)
88 PTZ00139 Succinate dehydrogena 48.1 17 0.00038 37.2 3.4 36 244-279 399-443 (617)
89 PRK07512 L-aspartate oxidase; 48.0 13 0.00027 37.2 2.3 37 243-279 350-395 (513)
90 COG0644 FixC Dehydrogenases (f 47.9 26 0.00056 33.5 4.4 36 245-280 266-306 (396)
91 TIGR00137 gid_trmFO tRNA:m(5)U 47.9 42 0.00092 33.0 5.8 35 245-280 327-365 (433)
92 TIGR01421 gluta_reduc_1 glutat 46.7 23 0.0005 34.6 3.9 37 243-279 291-327 (450)
93 TIGR01424 gluta_reduc_2 glutat 46.6 24 0.00052 34.3 4.0 38 243-280 289-326 (446)
94 TIGR01316 gltA glutamate synth 46.5 20 0.00044 35.0 3.5 36 243-278 411-446 (449)
95 PRK06452 sdhA succinate dehydr 46.2 21 0.00046 36.2 3.6 36 243-278 355-400 (566)
96 COG1231 Monoamine oxidase [Ami 46.0 1.2E+02 0.0026 30.0 8.5 128 132-280 313-446 (450)
97 TIGR01317 GOGAT_sm_gam glutama 45.9 19 0.0004 35.8 3.1 37 243-279 440-476 (485)
98 PRK10262 thioredoxin reductase 45.8 15 0.00033 33.8 2.3 37 243-279 275-312 (321)
99 PRK13748 putative mercuric red 45.8 22 0.00049 35.6 3.7 38 243-280 391-428 (561)
100 PRK05335 tRNA (uracil-5-)-meth 45.5 32 0.0007 33.8 4.6 31 246-277 329-359 (436)
101 PRK14694 putative mercuric red 44.4 25 0.00054 34.5 3.7 39 243-281 298-336 (468)
102 PRK11749 dihydropyrimidine deh 44.1 23 0.0005 34.6 3.4 37 243-279 413-449 (457)
103 PRK05249 soluble pyridine nucl 44.0 25 0.00054 34.2 3.7 38 243-280 298-335 (461)
104 TIGR03140 AhpF alkyl hydropero 43.9 16 0.00034 36.5 2.3 37 243-279 473-510 (515)
105 PRK12769 putative oxidoreducta 43.9 24 0.00052 36.4 3.6 37 243-279 613-649 (654)
106 PLN02815 L-aspartate oxidase 43.8 19 0.00041 36.8 2.8 37 242-278 385-430 (594)
107 PRK07057 sdhA succinate dehydr 43.7 19 0.00041 36.7 2.8 35 245-279 381-424 (591)
108 PRK14727 putative mercuric red 43.3 25 0.00055 34.6 3.6 38 243-280 309-346 (479)
109 TIGR01811 sdhA_Bsu succinate d 43.0 20 0.00043 36.7 2.9 37 242-278 378-422 (603)
110 PRK13800 putative oxidoreducta 42.9 19 0.00042 38.6 2.9 37 242-278 369-406 (897)
111 PRK12775 putative trifunctiona 42.9 26 0.00056 38.2 3.8 37 243-279 716-752 (1006)
112 TIGR03315 Se_ygfK putative sel 42.4 26 0.00055 38.3 3.7 38 243-281 801-839 (1012)
113 PRK13984 putative oxidoreducta 41.8 26 0.00055 35.7 3.4 35 243-278 564-598 (604)
114 PRK06370 mercuric reductase; V 41.7 31 0.00067 33.7 3.9 38 243-280 297-334 (463)
115 KOG0685 Flavin-containing amin 41.6 29 0.00064 34.5 3.6 87 184-279 388-489 (498)
116 TIGR01318 gltD_gamma_fam gluta 40.9 29 0.00063 34.2 3.6 35 244-278 428-462 (467)
117 PRK06292 dihydrolipoamide dehy 40.3 31 0.00068 33.5 3.7 38 242-279 293-330 (460)
118 PLN02852 ferredoxin-NADP+ redu 40.2 24 0.00051 35.3 2.8 37 244-280 383-420 (491)
119 PLN02546 glutathione reductase 39.7 31 0.00068 35.0 3.7 38 243-280 376-413 (558)
120 TIGR02061 aprA adenosine phosp 39.6 25 0.00055 36.1 3.0 36 16-51 64-100 (614)
121 TIGR01372 soxA sarcosine oxida 38.8 33 0.00071 37.3 3.8 34 244-278 435-468 (985)
122 PRK10015 oxidoreductase; Provi 38.6 28 0.00061 33.8 3.1 36 244-279 291-333 (429)
123 PRK06327 dihydrolipoamide dehy 38.6 34 0.00073 33.7 3.6 39 243-281 310-348 (475)
124 PRK07845 flavoprotein disulfid 38.1 36 0.00078 33.4 3.7 38 243-280 300-337 (466)
125 PRK06467 dihydrolipoamide dehy 37.9 35 0.00076 33.6 3.6 38 243-280 300-337 (471)
126 TIGR01423 trypano_reduc trypan 37.1 40 0.00087 33.5 3.9 38 243-280 314-351 (486)
127 PRK15317 alkyl hydroperoxide r 36.9 28 0.00062 34.7 2.8 36 243-278 472-508 (517)
128 TIGR01350 lipoamide_DH dihydro 36.7 39 0.00085 32.8 3.7 38 244-281 296-333 (461)
129 PRK12770 putative glutamate sy 36.7 37 0.0008 31.8 3.4 35 244-279 312-347 (352)
130 PF01134 GIDA: Glucose inhibit 36.7 29 0.00063 33.7 2.7 35 243-278 350-385 (392)
131 PRK12778 putative bifunctional 36.6 33 0.00073 35.9 3.4 36 244-279 712-747 (752)
132 TIGR02053 MerA mercuric reduct 36.5 39 0.00085 32.9 3.7 38 243-280 292-329 (463)
133 PRK08626 fumarate reductase fl 36.4 30 0.00065 35.8 3.0 36 243-278 381-426 (657)
134 TIGR00292 thiazole biosynthesi 36.2 38 0.00083 30.6 3.3 37 244-280 209-252 (254)
135 PRK07818 dihydrolipoamide dehy 36.2 41 0.00088 32.9 3.8 38 243-280 299-336 (466)
136 PRK04176 ribulose-1,5-biphosph 35.9 38 0.00082 30.6 3.3 35 246-280 212-253 (257)
137 KOG3817 Uncharacterized conser 35.7 64 0.0014 31.0 4.7 46 176-222 319-365 (452)
138 PRK06416 dihydrolipoamide dehy 35.2 41 0.0009 32.7 3.6 38 243-280 297-334 (462)
139 TIGR02028 ChlP geranylgeranyl 34.5 39 0.00085 32.4 3.3 33 247-279 269-306 (398)
140 COG1635 THI4 Ribulose 1,5-bisp 34.0 27 0.00058 31.6 1.8 38 243-280 214-258 (262)
141 PF15200 KRTDAP: Keratinocyte 33.8 60 0.0013 23.7 3.3 34 10-43 14-53 (77)
142 TIGR03452 mycothione_red mycot 33.6 49 0.0011 32.4 3.8 38 243-280 291-328 (452)
143 PRK12809 putative oxidoreducta 33.1 43 0.00092 34.5 3.4 36 243-279 596-632 (639)
144 PRK06115 dihydrolipoamide dehy 32.8 47 0.001 32.6 3.6 38 243-280 301-338 (466)
145 PRK09853 putative selenate red 32.6 45 0.00098 36.4 3.6 37 244-281 804-841 (1019)
146 PRK07804 L-aspartate oxidase; 32.5 32 0.00069 34.6 2.4 36 15-50 72-108 (541)
147 TIGR03143 AhpF_homolog putativ 32.3 56 0.0012 32.9 4.1 36 243-278 269-305 (555)
148 PRK12814 putative NADPH-depend 31.1 51 0.0011 34.1 3.6 36 243-278 462-497 (652)
149 PRK07846 mycothione reductase; 31.0 58 0.0012 31.9 3.9 38 243-280 288-325 (451)
150 PLN02661 Putative thiazole syn 30.7 46 0.001 31.9 3.0 37 246-282 285-328 (357)
151 PLN00093 geranylgeranyl diphos 29.5 51 0.0011 32.4 3.2 36 244-279 305-345 (450)
152 PRK12779 putative bifunctional 28.8 48 0.001 35.9 3.1 37 243-279 588-624 (944)
153 TIGR03862 flavo_PP4765 unchara 28.7 38 0.00083 32.6 2.1 35 245-279 334-373 (376)
154 COG0029 NadB Aspartate oxidase 28.5 34 0.00074 34.2 1.7 37 242-280 349-396 (518)
155 PTZ00306 NADH-dependent fumara 28.4 41 0.00089 37.3 2.5 36 244-279 857-900 (1167)
156 PF08331 DUF1730: Domain of un 28.2 1.3E+02 0.0029 21.8 4.5 29 176-206 45-73 (78)
157 PRK06912 acoL dihydrolipoamide 28.0 63 0.0014 31.5 3.6 39 243-281 293-331 (458)
158 PRK12771 putative glutamate sy 27.8 58 0.0013 32.8 3.4 36 243-278 405-440 (564)
159 PRK01747 mnmC bifunctional tRN 27.7 1.8E+02 0.0039 29.9 7.0 34 246-281 601-634 (662)
160 PRK07573 sdhA succinate dehydr 26.8 62 0.0013 33.4 3.4 16 242-257 414-429 (640)
161 COG0492 TrxB Thioredoxin reduc 26.7 59 0.0013 30.3 2.9 37 242-278 260-297 (305)
162 PRK06854 adenylylsulfate reduc 26.3 69 0.0015 32.8 3.6 34 244-277 392-427 (608)
163 PF03791 KNOX2: KNOX2 domain ; 26.3 1.2E+02 0.0026 20.7 3.6 27 17-44 24-50 (52)
164 TIGR03378 glycerol3P_GlpB glyc 26.2 80 0.0017 31.0 3.8 31 246-278 381-419 (419)
165 TIGR02032 GG-red-SF geranylger 25.8 60 0.0013 28.7 2.8 31 247-277 260-295 (295)
166 TIGR02023 BchP-ChlP geranylger 25.4 71 0.0015 30.3 3.3 33 247-279 263-300 (388)
167 PRK05976 dihydrolipoamide dehy 24.9 82 0.0018 30.9 3.7 37 244-280 307-343 (472)
168 TIGR01438 TGR thioredoxin and 24.7 81 0.0018 31.2 3.7 38 243-280 306-344 (484)
169 COG1249 Lpd Pyruvate/2-oxoglut 24.2 92 0.002 30.8 3.9 36 243-279 298-334 (454)
170 PF10835 DUF2573: Protein of u 23.6 1E+02 0.0022 23.0 3.0 22 26-48 55-76 (82)
171 PRK08010 pyridine nucleotide-d 23.5 93 0.002 30.1 3.8 38 243-280 280-317 (441)
172 COG2081 Predicted flavoprotein 23.4 68 0.0015 31.3 2.7 35 245-279 366-405 (408)
173 cd08809 CARD_CARD9 Caspase act 21.9 55 0.0012 24.7 1.4 20 12-32 64-83 (86)
174 COG1574 Predicted metal-depend 21.7 1.4E+02 0.0031 30.2 4.8 35 186-222 346-385 (535)
175 cd08807 CARD_CARD10_CARMA3 Cas 21.2 57 0.0012 24.6 1.3 17 12-29 64-80 (86)
176 PF03486 HI0933_like: HI0933-l 21.2 61 0.0013 31.6 2.0 31 245-275 373-408 (409)
177 PRK09754 phenylpropionate diox 20.6 1.1E+02 0.0024 29.2 3.6 40 242-281 262-310 (396)
178 PF00890 FAD_binding_2: FAD bi 20.5 18 0.00038 34.6 -1.9 37 15-51 62-99 (417)
179 COG1053 SdhA Succinate dehydro 20.4 1E+02 0.0022 31.5 3.4 38 14-51 66-104 (562)
180 PTZ00052 thioredoxin reductase 20.3 1.1E+02 0.0024 30.4 3.7 37 244-280 304-341 (499)
181 PRK07251 pyridine nucleotide-d 20.3 1.2E+02 0.0026 29.3 3.8 38 243-280 279-316 (438)
No 1
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=5.7e-34 Score=280.33 Aligned_cols=157 Identities=42% Similarity=0.805 Sum_probs=136.4
Q ss_pred cceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 022805 117 IHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVER 196 (292)
Q Consensus 117 ~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~ 196 (292)
.||+++.+|+. ...+++++||++||..||++||+|+++++++++ .+.+.|.++. .++|++.|+++++++|+.+|+
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~--~~~~~w~~~~--~~~y~~~k~~~~~~il~~l~~ 406 (493)
T TIGR02730 332 CHHILLEDWTN-LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP--SSMEDWQGLS--PKDYEAKKEADAERIIDRLEK 406 (493)
T ss_pred ccEEecchhhc-cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC--CChhhccCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 35666566644 345678999999999999999999999998885 5668898753 478999999999999999999
Q ss_pred HhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCc-CC--CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHH
Q 022805 197 ALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKE-TF--PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIV 273 (292)
Q Consensus 197 ~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~-~~--~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~ 273 (292)
++ |+| +++|+..++.||+|+++|+++++|+||..+...+. .+ +.++|+|+|||+||+++|||+||+||++||++|
T Consensus 407 ~~-p~l-~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~ 484 (493)
T TIGR02730 407 IF-PGL-DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFAC 484 (493)
T ss_pred HC-CCh-hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHH
Confidence 99 999 99999999999999999999999999987765443 22 457899999999999999999999999999999
Q ss_pred HHHHhch
Q 022805 274 ANSLVSV 280 (292)
Q Consensus 274 A~~il~~ 280 (292)
|+.|++.
T Consensus 485 a~~i~~~ 491 (493)
T TIGR02730 485 AHRVAAD 491 (493)
T ss_pred HHHHHhh
Confidence 9999863
No 2
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=265.50 Aligned_cols=162 Identities=41% Similarity=0.659 Sum_probs=139.3
Q ss_pred EcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022805 122 VNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPG 201 (292)
Q Consensus 122 ~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~ 201 (292)
+.||+.+....+|.+++++||..||+++|+|+|++++++.. .+ +.|++..++ +|+++|+++++++++.+|+.+ |+
T Consensus 387 v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~-t~-~~w~g~~~~--eye~~K~~~ae~~~~~ie~l~-Pg 461 (561)
T KOG4254|consen 387 VEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQY-TP-EEWEGGLKG--EYETKKEAFAERVFSVIEKLA-PG 461 (561)
T ss_pred HhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccC-Cc-cccccCCcc--cchHHHHHHHHHHHHHHHHHc-CC
Confidence 34465666778999999999999999999999999999974 34 889986543 899999999999999999999 99
Q ss_pred CCCCceeEEEeCCHHHHHHHhcCCCCC-CCCccCCCCc--CCC-----CCCCCCCcEEEeCCCcCCCCcchhhhhhHHHH
Q 022805 202 FSRDKCDVKLVGTPLTHQRFLRRNRGT-YGPAIQAGKE--TFP-----GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIV 273 (292)
Q Consensus 202 l~r~~I~~~~~~TPlT~~~y~~~~~Gs-yG~a~~~~~~--~~~-----~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~ 273 (292)
| ++.|+.+++.||+|+|||+++++|+ |+.+-...+. .+| +.+|||+|||+|||++|||+||++|+ |+++
T Consensus 462 f-sssv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~ 538 (561)
T KOG4254|consen 462 F-SSSVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLA 538 (561)
T ss_pred c-cceEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHH
Confidence 9 8889999999999999999999999 6655544443 333 44899999999999999999999975 9999
Q ss_pred HHHHhchhchHHHHHhhC
Q 022805 274 ANSLVSVSQHSELLDAIG 291 (292)
Q Consensus 274 A~~il~~~~~~~~l~~~~ 291 (292)
|+..+...++...++.|+
T Consensus 539 A~~a~~~~~~~~~l~nl~ 556 (561)
T KOG4254|consen 539 AHSAILDRKLYSDLKNLD 556 (561)
T ss_pred HHHHhhhhhhHHHhhhhc
Confidence 999998888877777665
No 3
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.98 E-value=5.6e-32 Score=266.31 Aligned_cols=177 Identities=24% Similarity=0.340 Sum_probs=151.0
Q ss_pred cCCCceeEEEeeccc---CCCCCCCCCccceEEE-cccCC--------CCCCCCCeEEEEcCCCCCCCCCCCCceEEEEE
Q 022805 92 LLRPFSEIVDSLELE---DPFGLREDLGIHHIVV-NDWDR--------GVDADQNVVLISVPSVLSPDLAPPGKHVLHAY 159 (292)
Q Consensus 92 ~~~~~s~~~~~~~l~---~~~~l~~~l~~h~~~~-~d~~~--------~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~ 159 (292)
...+.|.|++|++++ .++ +.+.+|++++ .+|+. +..+.++++||++||..||++||+|+++++++
T Consensus 298 ~~~s~s~~~~~lgl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~ 374 (502)
T TIGR02734 298 KRPSPSLFVLYFGLLGVDGHW---PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVL 374 (502)
T ss_pred CCcCCeeeEEEEeeccccCcC---CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEE
Confidence 456889999999998 455 5567888888 56653 34567899999999999999999999999999
Q ss_pred ccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCceeEEEeCCHHHHHHHhcCCCCC-CCCccCCCC
Q 022805 160 TPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERA-LGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-YGPAIQAGK 237 (292)
Q Consensus 160 t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~-~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs-yG~a~~~~~ 237 (292)
+++ +++.|. .++|++.|+++++++|+.+|++ + |+| +++|+..+++||+||++|+++++|+ ||.+++..|
T Consensus 375 ~~~--~~~~~~-----~~~~~~~k~~~~~~il~~l~~~~~-p~l-~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q 445 (502)
T TIGR02734 375 APV--PHLGTA-----DVDWSVEGPRYRDRILAYLEERAI-PGL-RDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQ 445 (502)
T ss_pred EeC--CCCCCC-----CCCcHHHHHHHHHHHHHHHHHhcC-CCh-hHheEEEEEcCHHHHHHhcCCCCccccchhhchhh
Confidence 975 333222 2468788999999999999998 8 999 9999999999999999999999999 999988776
Q ss_pred cC-C-CC-CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 238 ET-F-PG-HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 238 ~~-~-~~-~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.. + |. .+|+|+|||+||++||||+||+||++||++||+.|++.
T Consensus 446 ~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 446 SAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred cccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 42 3 33 46999999999999999999999999999999999874
No 4
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=9.7e-30 Score=249.99 Aligned_cols=175 Identities=24% Similarity=0.341 Sum_probs=144.2
Q ss_pred ccCCCceeEEEeecccCCCCCCCCCccceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccC
Q 022805 91 KLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWK 170 (292)
Q Consensus 91 ~~~~~~s~~~~~~~l~~~~~l~~~l~~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~ 170 (292)
+++.+.++|++++++++.. ++.+...|+.+..+. .+++||+.++ .||++||+|+++++++++ .++..|+
T Consensus 314 ~~~~s~~~~~v~l~~~~~~-~~~~~~~~~~~~~~~-------~~~~~v~~~~-~d~~~aP~G~~~l~~~~~--~~~~~~~ 382 (492)
T TIGR02733 314 KLPEPSGAFVFYLGVKRAA-LPVDCPPHLQFLSDH-------QGSLFVSISQ-EGDGRAPQGEATLIASSF--TDTNDWS 382 (492)
T ss_pred cCCCCCceEEEEEeecccc-cCCCCCcceeeccCC-------CceEEEEeCC-ccccCCCCCceEEEEEcC--CCHHHHc
Confidence 3566788999999998852 222333444433322 2378998876 588999999999988885 4667786
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCC-CCCccCCCCc-CC-CCCCCCC
Q 022805 171 GLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-YGPAIQAGKE-TF-PGHSTPI 247 (292)
Q Consensus 171 ~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs-yG~a~~~~~~-~~-~~~~T~i 247 (292)
.+ ++++|++.|+++++++|+.+|+++ |+| +++|+..++.||+|+++|+++++|+ ||.+++..|. ++ ++++|+|
T Consensus 383 ~~--~~~~y~~~k~~~~~~il~~le~~~-p~l-~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i 458 (492)
T TIGR02733 383 SL--DEEDYTAKKKQYTQTIIERLGHYF-DLL-EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV 458 (492)
T ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHC-CCc-cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC
Confidence 54 347899999999999999999999 999 9999999999999999999999999 9999887764 23 4558999
Q ss_pred CcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 248 PQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 248 ~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|||+||++||||+|++||++||++||+.|++.
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 459 KGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999864
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=3.8e-22 Score=196.47 Aligned_cols=132 Identities=38% Similarity=0.554 Sum_probs=110.6
Q ss_pred eEEEEcCCCCCCCCCCCCceEEE-EEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeC
Q 022805 135 VVLISVPSVLSPDLAPPGKHVLH-AYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVG 213 (292)
Q Consensus 135 ~~~v~~ps~~Dps~AP~G~~~i~-v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~ 213 (292)
++++++||..|||+||+|++.+. .+.+ .+ . ..+|++.|+++++. ++.+++.+ |++ +++|+.+++.
T Consensus 346 ~~~v~~ps~~Dps~AP~G~~~~~~~~~~--~~-----~----~~~~~~~~~~~~~~-~~~~~~~~-p~~-~~~iv~~~~~ 411 (487)
T COG1233 346 PLYVSIPSLTDPSLAPEGKHSTFAQLVP--VP-----S----LGDYDELKESLADA-IDALEELA-PGL-RDRIVAREVL 411 (487)
T ss_pred ceEEeCCCCCCCccCCCCCcceeeeeee--cC-----c----CCChHHHHHHHHHH-HHHHhhcC-CCc-ccceeEEEEe
Confidence 79999999999999999998322 2222 11 1 13567889999999 89999999 999 9999999999
Q ss_pred CHHHHHHHhcCCCCC-CCCccCCCCcCC--CCC-CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 214 TPLTHQRFLRRNRGT-YGPAIQAGKETF--PGH-STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 214 TPlT~~~y~~~~~Gs-yG~a~~~~~~~~--~~~-~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
||.+++++++.+.|+ ||.++...|..+ |.+ +|+|+|||+||++||||+|++|+..++..++..+...
T Consensus 412 tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 412 TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence 999999999999999 999998877533 333 5999999999999999999999988888888777643
No 6
>PLN02612 phytoene desaturase
Probab=98.74 E-value=6.7e-08 Score=97.30 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=81.2
Q ss_pred EEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----Cc-eeE
Q 022805 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSR-----DK-CDV 209 (292)
Q Consensus 136 ~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r-----~~-I~~ 209 (292)
++...++. .++++++|++.+. .+. .+.+.|.++ -++++.+.+++.|++.+ |+... .+ +.+
T Consensus 420 ~~~d~S~~-~~~~~~~~~~ll~-~~~--~~a~~~~~~---------sdeei~e~vl~~L~~lf-p~~~~~~~~~~~i~~~ 485 (567)
T PLN02612 420 VYADMSTT-CKEYYDPNKSMLE-LVF--APAEEWISR---------SDEDIIDATMKELAKLF-PDEISADQSKAKILKY 485 (567)
T ss_pred eehhhhhc-chhhcCCCCeEEE-EEE--EcChhhhcC---------CHHHHHHHHHHHHHHHC-CcccccccCCceEEEE
Confidence 44444333 3456777775444 332 345567653 24678889999999999 86511 22 444
Q ss_pred EEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCC--CcchhhhhhHHHHHHHHhchh
Q 022805 210 KLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPG--IGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 210 ~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG--~Gv~gv~~SG~~~A~~il~~~ 281 (292)
..+.+|.++.++ .+.+. . ..|..+||++|||++||+|.++ .++.||+.||+.||++|++..
T Consensus 486 ~~v~~P~a~~~~--~pg~~----~-----~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 486 HVVKTPRSVYKT--VPNCE----P-----CRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred EEeccCCceEEe--CCCCc----c-----cCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 678899876322 12111 1 1245689999999999999875 589999999999999998654
No 7
>PRK07233 hypothetical protein; Provisional
Probab=98.48 E-value=2.9e-06 Score=81.52 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=77.5
Q ss_pred eEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-ceeEEEeC
Q 022805 135 VVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRD-KCDVKLVG 213 (292)
Q Consensus 135 ~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~-~I~~~~~~ 213 (292)
..-+..+|..||+.+|+|++.+.+.+++..... .|...++++.+.+++.|++.+ |++ ++ .++...+.
T Consensus 304 ~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~L~~~~-p~~-~~~~~~~~~~~ 371 (434)
T PRK07233 304 FGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHP----------LWQMSDEELLDRFLSYLRKMF-PDF-DRDDVRAVRIS 371 (434)
T ss_pred cceEEEecccCCccccCCceEEEEeeecCCCCh----------hhcCCHHHHHHHHHHHHHHhC-CCC-ChhheeeEEEE
Confidence 333444567788888888887655443211111 223346788999999999999 988 54 44444432
Q ss_pred CHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCc--CCCCcchhhhhhHHHHHHHHhch
Q 022805 214 TPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDST--FPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 214 TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~--~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
. ..| ..+.|.+. .....+..+++++|||++|+++ .+|.++.+++.||..||++|++.
T Consensus 372 r----~~~---a~~~~~~g---~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 372 R----APY---AQPIYEPG---YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred E----ecc---ccccccCc---hhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhh
Confidence 1 001 01112111 0112244578899999999964 24568999999999999999764
No 8
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.94 E-value=1.8e-06 Score=81.17 Aligned_cols=125 Identities=30% Similarity=0.486 Sum_probs=71.6
Q ss_pred CeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCceeEEE
Q 022805 134 NVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPG--FSRDKCDVKL 211 (292)
Q Consensus 134 ~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~--l~r~~I~~~~ 211 (292)
+..++..++..++. ++..++..++... ....|.+. -++++.+.+++.|++.+ |. + .+-+....
T Consensus 320 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~~~~---------~~e~~~~~~~~~L~~~~-~~~~~-~~~~~~~~ 384 (450)
T PF01593_consen 320 PIGYVSDPSKFPGR---PGGGVLTSYVGGP-DAPEWDDL---------SDEEILERVLDDLRKIL-PGASI-PDPIDITV 384 (450)
T ss_dssp SEEEEEEECCTTSC---TTSEEEEEEEEHH-HHHHHTTS---------CHHHHHHHHHHHHHHHH-TTGGG-GEESEEEE
T ss_pred ccccccccccCccc---ccCCcceeeeecc-ccchhccc---------chhhhHHHHHHHhhhcc-ccccc-cccccccc
Confidence 45666666665554 4445655555321 11344433 24567788999999999 73 3 22221111
Q ss_pred eCCHHHHHHHhcCCCCCCCCccCCCC-cCCCCCCCCC-CcEEEeCCCcCCC--CcchhhhhhHHHHHHHHh
Q 022805 212 VGTPLTHQRFLRRNRGTYGPAIQAGK-ETFPGHSTPI-PQLYCCGDSTFPG--IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 212 ~~TPlT~~~y~~~~~GsyG~a~~~~~-~~~~~~~T~i-~nLyl~G~~~~pG--~Gv~gv~~SG~~~A~~il 278 (292)
. .-+...| +.|+|+....... ..++..++|+ +||||||++++++ +|++||+.||+.||++|+
T Consensus 385 ~--~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 385 T--RWSRDPY---PRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp E--ECTTSTT---TSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred c--ccccccc---cccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 1 1011111 2343332211111 1224456787 7999999999998 699999999999999986
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.78 E-value=0.00032 Score=67.85 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=70.8
Q ss_pred eEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCC
Q 022805 135 VVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGT 214 (292)
Q Consensus 135 ~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~T 214 (292)
...+..+|...|..+|+|+..+.++... +...+ .++.-++++.+.+++.|++.+ + + .+..+...+..
T Consensus 327 ~~~~~~~s~~~~~~~p~g~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~L~~~~-g-~-~~~~~~~~~~r 393 (451)
T PRK11883 327 ITACTWTSKKWPHTTPEGKVLLRLYVGR--PGDEA--------VVDATDEELVAFVLADLSKVM-G-I-TGDPEFTIVQR 393 (451)
T ss_pred EEEEEeEcCcCCCCCCCCcEEEEEecCC--CCCch--------hccCCHHHHHHHHHHHHHHHh-C-C-CCCceEEEEee
Confidence 3445556777788899898776665532 11111 111235677889999999997 3 3 22323333221
Q ss_pred HHHHHHHhcCCCCC---CCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 215 PLTHQRFLRRNRGT---YGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 215 PlT~~~y~~~~~Gs---yG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
...+ |+.........+ ..... ++|||++|+++. |.|+++++.||+.+|++|+.
T Consensus 394 ----------w~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 394 ----------WKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred ----------cCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence 1122 222110000011 11122 789999999987 68999999999999999874
No 10
>PLN02487 zeta-carotene desaturase
Probab=97.59 E-value=0.00031 Score=70.89 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCc-eeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCC
Q 022805 183 KAERSEVIWRAVERALGPGFSRDK-CDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPG 260 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~-I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG 260 (292)
.+++.+++++.|.+.+ |.. ++. +....+.. -.+..|- ..+++..+ |..+|+++|||++||+|..|
T Consensus 464 ~~ei~~~~~~~L~~~~-p~~-~~~~v~~~~vv~---------~~~at~~--~~pg~~~~RP~~~T~~~nl~LAGD~t~~~ 530 (569)
T PLN02487 464 NDKIVEKVHKQVLELF-PSS-RGLEVTWSSVVK---------IGQSLYR--EAPGMDPFRPDQKTPISNFFLAGSYTKQD 530 (569)
T ss_pred HHHHHHHHHHHHHHhC-ccc-ccCceEEEEEEE---------ccCceec--cCCCccccCCCCCCCCCCEEEeCcccccC
Confidence 4678889999999999 998 553 44432210 0112231 12222223 77899999999999999765
Q ss_pred C--cchhhhhhHHHHHHHHhchhchHH
Q 022805 261 I--GVPAVAASGAIVANSLVSVSQHSE 285 (292)
Q Consensus 261 ~--Gv~gv~~SG~~~A~~il~~~~~~~ 285 (292)
. ++-|+..||..||+.|+.....+.
T Consensus 531 yPat~EgAv~SG~~AA~~i~~~~~~~~ 557 (569)
T PLN02487 531 YIDSMEGATLSGRQAAAYICEAGEELA 557 (569)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 677899999999999988764433
No 11
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.48 E-value=0.00034 Score=68.23 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-----CCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCC
Q 022805 182 LKAERSEVIWRAVERALGPGF-----SRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDS 256 (292)
Q Consensus 182 ~K~~~a~~ll~~le~~~~P~l-----~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~ 256 (292)
-++++.+.+++.|++.+ |+. ..+.+.+..+..|.+. |... .|.. ...+..++|++|||++|++
T Consensus 362 ~~ee~~~~v~~~L~~~~-~~~~~~~~~~~~~~~~~~~~p~a~--~~~~----pg~~-----~~~~~~~~p~~~l~~AG~~ 429 (453)
T TIGR02731 362 SDEEIIDATMAELAKLF-PNHIKADSPAKILKYKVVKTPRSV--YKTT----PGRQ-----QYRPHQKTPIPNFFLAGDY 429 (453)
T ss_pred CHHHHHHHHHHHHHHhC-CcccCCCCCceEEEEEEEECCCce--eccC----CCCh-----hhCccccCccCCEEEeehh
Confidence 35678889999999999 752 0124556667777652 2111 2211 1124457899999999988
Q ss_pred c---CCCCcchhhhhhHHHHHHHHh
Q 022805 257 T---FPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 257 ~---~pG~Gv~gv~~SG~~~A~~il 278 (292)
+ +|| ++.|++.||..||++|+
T Consensus 430 ~a~~~~g-~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 430 TKQKYLA-SMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ccCcccc-cHHHHHHHHHHHHHHhC
Confidence 8 554 89999999999999874
No 12
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.40 E-value=0.00057 Score=67.49 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCC-ceeEE-EeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCC
Q 022805 183 KAERSEVIWRAVERALGPGFSRD-KCDVK-LVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPG 260 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~-~I~~~-~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG 260 (292)
.+++.+++++.|++.+ |.+ ++ .+... .+.-| +..|-..+.. ....|+.+|+++|||+|||++..|
T Consensus 388 ~~~l~~~~~~~L~~~~-p~~-~~~~~~~~~v~~~~----------~a~~~~~pg~-~~~~P~~~t~~~~l~lAGD~t~~~ 454 (474)
T TIGR02732 388 NEEIAKRVDKQVRALF-PSS-KNLKLTWSSVVKLA----------QSLYREAPGM-DPFRPDQKTPISNFFLAGSYTQQD 454 (474)
T ss_pred HHHHHHHHHHHHHHhC-ccc-cCCceeEEEEEEec----------CceeccCCCC-cccCCCCCCCCCCeEEeccccccC
Confidence 4678889999999999 987 54 33332 11111 1112211111 112377899999999999999764
Q ss_pred C--cchhhhhhHHHHHHHHh
Q 022805 261 I--GVPAVAASGAIVANSLV 278 (292)
Q Consensus 261 ~--Gv~gv~~SG~~~A~~il 278 (292)
. ++-|++.||..||+.|+
T Consensus 455 ~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 455 YIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred chHHHhHHHHHHHHHHHHhC
Confidence 3 67789999999999874
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.31 E-value=0.00036 Score=66.47 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-CceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCC
Q 022805 183 KAERSEVIWRAVERALGPGFSR-DKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGI 261 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r-~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~ 261 (292)
++++.+.+++.|++.+ |+. . ..++... .....++.|+...... ...+..+++++|||+||+++.+|.
T Consensus 332 ~e~~~~~~l~~l~~~~-~~~-~~~~~~~~~---------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~ 399 (419)
T TIGR03467 332 REELADRIVAELRRAF-PRV-AGAKPLWAR---------VIKEKRATFAATPGLN-RLRPGARTPWPNLFLAGDWTATGW 399 (419)
T ss_pred HHHHHHHHHHHHHHhc-Ccc-ccCCccceE---------EEEccCCccccCCccc-ccCCCCCCCcCCEEEecccccCCC
Confidence 4678889999999999 865 3 2232211 1122233343222111 112335688999999999998741
Q ss_pred --cchhhhhhHHHHHHHHhc
Q 022805 262 --GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 262 --Gv~gv~~SG~~~A~~il~ 279 (292)
-+-||+.||..+|++|++
T Consensus 400 ~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 400 PATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cchHHHHHHHHHHHHHHHhC
Confidence 356899999999999864
No 14
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.85 E-value=0.045 Score=53.25 Aligned_cols=121 Identities=23% Similarity=0.361 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCH
Q 022805 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTP 215 (292)
Q Consensus 136 ~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TP 215 (292)
.-+...|..-|..+|+|+..++++... .....|... -.+++.+.+++.|.+.+ + + ...++...+.
T Consensus 335 ~~~i~~s~~~p~~~p~g~~~l~~~~~g-~~~~~~~~~---------~~ee~~~~v~~~L~~~~-g-i-~~~p~~~~v~-- 399 (462)
T TIGR00562 335 LGCIFTSKLFPNRAPPGKTLLTAYIGG-ATDESIVDL---------SENEIINIVLRDLKKVL-N-I-NNEPEMLCVT-- 399 (462)
T ss_pred EEEEEEccccCCcCCCCcEEEEEEeCC-CCCccccCC---------CHHHHHHHHHHHHHHHh-C-C-CCCCcEEEEe--
Confidence 334444555677888898877776632 111222111 23567788999999987 4 5 4333333331
Q ss_pred HHHHHHhcCCCCC---CCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 216 LTHQRFLRRNRGT---YGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 216 lT~~~y~~~~~Gs---yG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
++ ..+ |...+......+ .-..+..+|||+||++.. |.|+.+++.||+.+|++|+..
T Consensus 400 ----rw----~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~~~ 459 (462)
T TIGR00562 400 ----RW----HRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE-GVGIPDCIDQGKAAASDVLTF 459 (462)
T ss_pred ----Ec----cccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC-CCcHHHHHHHHHHHHHHHHHh
Confidence 11 111 211110000000 001234579999999986 789999999999999998753
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=95.25 E-value=0.074 Score=52.42 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.6
Q ss_pred CcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 248 PQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 248 ~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|||+||+++. |.||.+++.||..+|++|+..
T Consensus 455 ~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 455 PGLFLGGNYRG-GVALGKCVESGYEAADLVISY 486 (496)
T ss_pred CCEEEeccccC-CccHHHHHHHHHHHHHHHHHH
Confidence 79999999997 789999999999999999764
No 16
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.97 E-value=0.36 Score=47.50 Aligned_cols=158 Identities=20% Similarity=0.143 Sum_probs=93.4
Q ss_pred ccCCCceeEEEeecccCCCCCCCCCccceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccC
Q 022805 91 KLLRPFSEIVDSLELEDPFGLREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWK 170 (292)
Q Consensus 91 ~~~~~~s~~~~~~~l~~~~~l~~~l~~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~ 170 (292)
+...+.|...+.++++.+- .+....+|-+++.|-+. ...-|+.+|+.=|-.+|.|++.+.+.... +.+.|
T Consensus 283 ~~~~~~s~~~vv~~~~~~~-~~~~~~~~g~~iad~~~------~~~a~~~~S~~~p~~~p~g~~ll~~~~~~--~g~~~- 352 (444)
T COG1232 283 KELQYTSVVTVVVGLDEKD-NPALPDGYGLLIADDDP------YILAITFHSNKWPHEAPEGKTLLRVEFGG--PGDES- 352 (444)
T ss_pred hhccccceEEEEEEecccc-ccCCCCceEEEEecCCC------cceeEEEecccCCCCCCCCcEEEEEEeec--CCCcc-
Confidence 3444555555557777651 11111233333343221 16678888899999999999998888742 22222
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCC--CCCccCCCCcCC-CCCCCCC
Q 022805 171 GLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT--YGPAIQAGKETF-PGHSTPI 247 (292)
Q Consensus 171 ~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs--yG~a~~~~~~~~-~~~~T~i 247 (292)
.+...-|+..+..++.|.+++ +.- .+-+ ...+ ++...+. |...+....... ..-.+-.
T Consensus 353 -------~~~~~dee~~~~~l~~L~~~~-~~~-~~~~-~~~v---------~r~~~~~PqY~vG~~~~~~~ir~~l~~~y 413 (444)
T COG1232 353 -------VSTMSDEELVAAVLDDLKKLG-GIN-GDPV-FVEV---------TRWKYAMPQYEVGHLDRLEPIRAALKGAY 413 (444)
T ss_pred -------hhccCHHHHHHHHHHHHHHHc-CcC-cchh-heee---------eeccccCCccchhHHHHHHHHHHhhcccc
Confidence 222234678888999999998 555 3333 2222 1223333 544332111111 1122234
Q ss_pred CcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 248 PQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 248 ~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
+|++.+|++-. |.|++.+..+|..++++++
T Consensus 414 ~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 414 PGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred CCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence 89999999974 5799999999999999876
No 17
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.054 Score=53.50 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCC-C-
Q 022805 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFP-G- 260 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~p-G- 260 (292)
+++......+.++..+ |......+....+-++...-. ...|+|. ..|+.+|+|+||+++||++.. .
T Consensus 375 ~~~~~a~~e~~~~~~v-P~~~~a~~~~~~i~~~q~~~~---~~pgs~~--------~rP~~~Tpv~N~~laGd~~~~~~~ 442 (485)
T COG3349 375 DEAIVATFEKELYELV-PSLAEAKLKSSVLVNQQSLYG---LAPGSYH--------YRPEQKTPIPNLLLAGDYTKQPYL 442 (485)
T ss_pred hhhHHHHHHHHhhhcC-Cchhcccccccceeccccccc---cCCCccc--------cCCCCCCCccchhhccceeecCCc
Confidence 4555666677777777 776344555555555532221 1223222 246789999999999999954 2
Q ss_pred CcchhhhhhHHHHHHHHhch
Q 022805 261 IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 261 ~Gv~gv~~SG~~~A~~il~~ 280 (292)
.-+.+++.||..||+.|+..
T Consensus 443 ~smE~A~~sGl~AA~~v~~~ 462 (485)
T COG3349 443 GSMEGATLSGLLAANAILDN 462 (485)
T ss_pred CccchhhhhHHHHHHHHHHh
Confidence 24778999999999999854
No 18
>PLN02676 polyamine oxidase
Probab=94.34 E-value=0.091 Score=52.19 Aligned_cols=94 Identities=21% Similarity=0.388 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCC--CCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCcCC
Q 022805 184 AERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRN--RGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDSTFP 259 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~--~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~~p 259 (292)
++..+.+++.|.+.+++++ .+-+.+.. .+|...+ .|+|.... ++.. ....-+.|+.+|||+|..+..
T Consensus 379 e~~~~~vl~~L~~~~g~~~-~~p~~~~~-------~~W~~dp~s~Gsys~~~-pG~~~~~~~~L~~P~gri~FAGe~ts~ 449 (487)
T PLN02676 379 SETKAEIMEVLRKMFGPNI-PEATDILV-------PRWWSNRFFKGSYSNWP-IGVSRYEFDQIRAPVGRVYFTGEHTSE 449 (487)
T ss_pred HHHHHHHHHHHHHHhCCCC-CCcceEEe-------cccCCCCCCCcccCCCC-CCCChhHHHHHhCCCCceEEecccccc
Confidence 4566788999999984455 43333321 1232222 47766332 2221 112235688999999999876
Q ss_pred C-Cc-chhhhhhHHHHHHHHhchhchHHH
Q 022805 260 G-IG-VPAVAASGAIVANSLVSVSQHSEL 286 (292)
Q Consensus 260 G-~G-v~gv~~SG~~~A~~il~~~~~~~~ 286 (292)
. .| +.|+..||..+|++|+...++..+
T Consensus 450 ~~~g~~eGA~~SG~RaA~~I~~~l~~~~~ 478 (487)
T PLN02676 450 KYNGYVHGAYLAGIDTANDLLECIKKKKC 478 (487)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCcc
Confidence 4 34 789999999999999876544433
No 19
>PRK07208 hypothetical protein; Provisional
Probab=93.34 E-value=0.41 Score=46.96 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=65.0
Q ss_pred EcCCCCCCCCCCCCceEEE-EEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeC-CHH
Q 022805 139 SVPSVLSPDLAPPGKHVLH-AYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVG-TPL 216 (292)
Q Consensus 139 ~~ps~~Dps~AP~G~~~i~-v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~-TPl 216 (292)
..++..+|..+|+|++... +..++....+.|.- -++++.+.+++.|++.. + +..+.++...+. .|.
T Consensus 336 ~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~----------~deel~~~~~~~L~~l~-~-~~~~~~~~~~v~r~~~ 403 (479)
T PRK07208 336 QNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNM----------SDEDLIALAIQELARLG-L-IRPADVEDGFVVRVPK 403 (479)
T ss_pred cccccCCcccCCCCCceEEEEEEEccCCCccccC----------CHHHHHHHHHHHHHHcC-C-CChhheeEEEEEEecC
Confidence 3445667889999986222 11111222334421 13456778888888863 4 313344443332 111
Q ss_pred HHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhchh
Q 022805 217 THQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 217 T~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+- .|-..+...........++.+|||++|.....+ ..+-+++.||.-+|+.|....
T Consensus 404 a~P--------~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 404 AYP--------VYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred ccc--------CCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 100 121111100000001235679999999765332 367789999999999998764
No 20
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=92.79 E-value=0.33 Score=47.41 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCCC
Q 022805 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGI 261 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG~ 261 (292)
.+++.+.+++.|++++ . + ....+...+.- |.+ ..+....|.... ...+ ...+.+.+|||++|++.. |.
T Consensus 373 dee~~~~~~~~L~~~l-G-~-~~~p~~~~v~~---W~~--a~P~y~~~~~~~--~~~~~~~l~~~~~~l~~aG~~~~-g~ 441 (463)
T PRK12416 373 EEELVRVALYDIEKSL-G-I-KGEPEVVEVTN---WKD--LMPKYHLEHNQA--VQSLQEKMMNLYPNIYLAGASYY-GV 441 (463)
T ss_pred HHHHHHHHHHHHHHHh-C-C-CCCceEEEEEE---ccc--cCCCcCcCHHHH--HHHHHHHHHhhCCCeEEeccccc-cc
Confidence 3577888999999998 3 5 33333333311 111 111111111000 0000 011234689999999976 78
Q ss_pred cchhhhhhHHHHHHHHhc
Q 022805 262 GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 262 Gv~gv~~SG~~~A~~il~ 279 (292)
|+.+++.||..+|++|+.
T Consensus 442 ~i~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 442 GIGACIGNGKNTANEIIA 459 (463)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999999999999974
No 21
>PLN02268 probable polyamine oxidase
Probab=90.83 E-value=0.44 Score=46.07 Aligned_cols=87 Identities=16% Similarity=0.305 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCC--CCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCcC
Q 022805 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRN--RGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDSTF 258 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~--~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~~ 258 (292)
.++..+.+++.|.+.+ |+. .+-+.... .+|...+ .|+|.... +++. ....-+.|+.+|||+|+.+.
T Consensus 340 ~~e~~~~v~~~L~~~~-~~~-~~p~~~~~-------~~W~~dp~~~G~~~~~~-~g~~~~~~~~l~~p~~~l~FAGe~ts 409 (435)
T PLN02268 340 DEAAANFAMSQLKKML-PDA-TEPVQYLV-------SRWGSDPNSLGCYSYDL-VGKPHDLYERLRAPVDNLFFAGEATS 409 (435)
T ss_pred HHHHHHHHHHHHHHHc-CCC-CCccEEEe-------cccCCCCCCCccCCCCC-CCCCHHHHHHHhCCCCCeEEeeccCC
Confidence 3567788999999999 866 44433321 2333322 46655432 2221 11223578899999999987
Q ss_pred CC-C-cchhhhhhHHHHHHHHhc
Q 022805 259 PG-I-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 259 pG-~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+ . -|-|++.||..+|++|+.
T Consensus 410 ~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 410 SDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred CcccccHHHHHHHHHHHHHHHHH
Confidence 63 2 388999999999999974
No 22
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=88.84 E-value=0.33 Score=44.78 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.5
Q ss_pred CcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 248 PQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 248 ~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
-+||+|||++. |+-|.|+.+||..+|.+|+.
T Consensus 299 ~~l~~cGDwc~-GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 299 LPLYACGDWCA-GGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred Cceeeeccccc-CcchhHHHhccHHHHHHHHh
Confidence 47999999997 56799999999999999974
No 23
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=87.70 E-value=1.1 Score=42.04 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 185 ERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 185 ~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
+..+.+++.+.+.+ |.+ .+ +..... |.+....+ ..++.+....++|||++.... |+|+.
T Consensus 286 ~~~~~l~~~~~~~~-P~~-~~-~~~~~~--------------g~~~~t~D--~~P~ig~~~~~~gl~~~~G~~--g~G~~ 344 (376)
T PRK11259 286 EDGAELRPFLRNYL-PGV-GP-CLRGAA--------------CTYTNTPD--EHFIIDTLPGHPNVLVASGCS--GHGFK 344 (376)
T ss_pred HHHHHHHHHHHHHC-CCC-Cc-cccceE--------------EecccCCC--CCceeecCCCCCCEEEEeccc--chhhh
Confidence 35677889999999 999 65 332222 22222222 223334444589999987765 78999
Q ss_pred hhhhhHHHHHHHHhchhc
Q 022805 265 AVAASGAIVANSLVSVSQ 282 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~~ 282 (292)
.+...|+..|+.|++.+.
T Consensus 345 ~ap~~g~~la~li~~~~~ 362 (376)
T PRK11259 345 FASVLGEILADLAQDGTS 362 (376)
T ss_pred ccHHHHHHHHHHHhcCCC
Confidence 999999999999987654
No 24
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=87.02 E-value=0.99 Score=44.60 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=38.8
Q ss_pred ccCCC-ceecccChhhHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 022805 3 YIPEG-EFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSA 46 (292)
Q Consensus 3 ~~p~~-~~~~~~g~~~f~~~l~~~f~p~~~~~~~~~~~~~~~~~~ 46 (292)
++|+| .+.+..+.++++++|.+.| |+++++|++|++.++++++
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~l~~~~-p~~~~~~~~~~~~~~~~~~ 130 (502)
T TIGR02734 87 CWEDGSQLDVDNDQEELEAQIARFN-PGDVAGYRRFLDYAERVYR 130 (502)
T ss_pred ECCCCCEEEecCCHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHH
Confidence 35655 7899999999999999999 9999999999999999886
No 25
>PLN02568 polyamine oxidase
Probab=86.39 E-value=0.91 Score=45.77 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCCcEEEeCCCcCCCC-c-chhhhhhHHHHHHHHhchh
Q 022805 246 PIPQLYCCGDSTFPGI-G-VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 246 ~i~nLyl~G~~~~pG~-G-v~gv~~SG~~~A~~il~~~ 281 (292)
|...|||+|..|+..+ | |.|+..||.-+|++|+...
T Consensus 498 ~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 498 PPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred CCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 4447999998887653 4 9999999999999998643
No 26
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=82.18 E-value=4.7 Score=36.96 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 185 ERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 185 ~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
+..+.+++.+.+.+ |.+ .+. +.+ ....|.+....+. .++.+.....+|+|++...- |+|+.
T Consensus 260 ~~~~~l~~~~~~~~-P~l-~~~--------~~~-----~~~~g~r~~t~D~--~piig~~~~~~~~~~~~g~~--g~G~~ 320 (337)
T TIGR02352 260 GGIKELLRDAYTIL-PAL-KEA--------RLL-----ETWAGLRPGTPDN--LPYIGEHPEDRRLLIATGHY--RNGIL 320 (337)
T ss_pred HHHHHHHHHHHHhC-CCc-ccC--------cHH-----HheecCCCCCCCC--CCEeCccCCCCCEEEEcccc--cCcee
Confidence 34567899999999 999 431 111 1123444443331 22334334568999998765 78999
Q ss_pred hhhhhHHHHHHHHhch
Q 022805 265 AVAASGAIVANSLVSV 280 (292)
Q Consensus 265 gv~~SG~~~A~~il~~ 280 (292)
.+...|+..|+.|++.
T Consensus 321 ~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 321 LAPATAEVIADLILGK 336 (337)
T ss_pred hhhHHHHHHHHHHhcC
Confidence 9999999999999864
No 27
>PLN03000 amine oxidase
Probab=80.89 E-value=1.5 Score=46.62 Aligned_cols=89 Identities=16% Similarity=0.322 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCC-CCC-CCceeE---EEeCCHHHHHHHhcCCCCCCCCccCCCCc--CCCCCCCCC--CcEEEeC
Q 022805 184 AERSEVIWRAVERALGP-GFS-RDKCDV---KLVGTPLTHQRFLRRNRGTYGPAIQAGKE--TFPGHSTPI--PQLYCCG 254 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P-~l~-r~~I~~---~~~~TPlT~~~y~~~~~GsyG~a~~~~~~--~~~~~~T~i--~nLyl~G 254 (292)
++..+.+++.|.++++| +.+ .+-+.. ....-| | ..|+|.... .++. .+..-+.|| .+|||+|
T Consensus 524 eE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DP-----y---srGSYS~~~-pG~~~~~~d~LaePv~~GRIfFAG 594 (881)
T PLN03000 524 TDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDP-----F---SLGSYSNVA-VGASGDDYDILAESVGDGRLFFAG 594 (881)
T ss_pred HHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCC-----C---CCccccCCC-CCCchHHHHHHhCcCCCCcEEEee
Confidence 45677889999998832 120 233322 222233 2 157765542 2221 111123455 3799999
Q ss_pred CCcCCC--CcchhhhhhHHHHHHHHhchh
Q 022805 255 DSTFPG--IGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 255 ~~~~pG--~Gv~gv~~SG~~~A~~il~~~ 281 (292)
..|... +-|.||..||.-+|++|+...
T Consensus 595 EaTs~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 595 EATTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred hHHhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 887642 258899999999999998653
No 28
>PLN02976 amine oxidase
Probab=80.51 E-value=1.8 Score=48.55 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCC---ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcC--CCCCCCCCCc-EEEeCCC
Q 022805 184 AERSEVIWRAVERALGPG-FSRD---KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKET--FPGHSTPIPQ-LYCCGDS 256 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P~-l~r~---~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~--~~~~~T~i~n-Lyl~G~~ 256 (292)
++..+.+++.|.+++ ++ .-.+ .++.....-|. ..|+|.... ++... +..-..|+.| |||+|..
T Consensus 1090 EE~Ve~ALe~LrKlF-G~~~iPdPv~~vvTrWssDPy--------SrGSYSy~~-PGs~~~d~d~LAePVggRLFFAGEA 1159 (1713)
T PLN02976 1090 SDHVNHALMVLRKLF-GEALVPDPVASVVTDWGRDPF--------SYGAYSYVA-IGASGEDYDILGRPVENCLFFAGEA 1159 (1713)
T ss_pred HHHHHHHHHHHHHHc-CcccccCcceeEEecCCCCCC--------cCccccCCC-CCCCchHHHHHhCCCCCcEEEEehh
Confidence 456678889999998 53 1012 22222233331 256664321 12111 1112467777 9999998
Q ss_pred cCCCC--cchhhhhhHHHHHHHHhch
Q 022805 257 TFPGI--GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 257 ~~pG~--Gv~gv~~SG~~~A~~il~~ 280 (292)
|.+.+ =|.||+.||.-+|.+|+..
T Consensus 1160 TS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1160 TCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 86643 3789999999999999753
No 29
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=80.42 E-value=1.8 Score=43.86 Aligned_cols=39 Identities=33% Similarity=0.679 Sum_probs=28.2
Q ss_pred CCCCCCcEEEeCCCc-------CCCCc--chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~pG~G--v~gv~~SG~~~A~~il~~~ 281 (292)
..++|||||-+|..+ .||.| +-.++.+|++|++.+.+..
T Consensus 520 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 520 DGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 457999999999653 23323 5557889999999887653
No 30
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=80.21 E-value=1.3 Score=43.50 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=33.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
..|.|+|||-+||.+---+|+..|++.|..+|+.|+.+
T Consensus 445 ~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 445 LSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred ceeeecceEEccccccccchhHHHhhhhHHHHHHHHHH
Confidence 35889999999999966689999999999999999754
No 31
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=80.15 E-value=7.1 Score=38.26 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+.+.+.+.+ |.+ ++ .|.+... |.++...+ ..++.+.....+|||++.... |+||.
T Consensus 319 ~~~~l~~~~~~~f-P~L-~~~~i~~~W~--------------G~~~~t~D--~~P~iG~~~~~~gl~~a~G~~--G~Gv~ 378 (460)
T TIGR03329 319 YEALLTRSLRKFF-PAL-AEVPIAASWN--------------GPSDRSVT--GLPFFGRLNGQPNVFYGFGYS--GNGVA 378 (460)
T ss_pred HHHHHHHHHHHhC-CCc-CCCeeeEEEe--------------ceeCCCCC--CCceeeeecCCCCEEEEeCcC--CCChh
Confidence 4567888899999 999 65 3433322 33332222 122233334578999987765 89999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+.++|++.|+.|++..
T Consensus 379 ~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 379 PSRMGGQILSSLVLGLD 395 (460)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999998753
No 32
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=79.57 E-value=4.5 Score=38.01 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcchh
Q 022805 186 RSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPA 265 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~g 265 (292)
..+.+.+.+++++ |.+ .+....... |.+... +...+..+....++|||++.... |+|+..
T Consensus 286 ~~~~l~~~~~~~~-P~l-~~~~~~~~~--------------~~~~~t--~D~~piIg~~p~~~~l~va~G~~--g~G~~~ 345 (380)
T TIGR01377 286 DVQILRKFVRDHL-PGL-NGEPKKGEV--------------CMYTNT--PDEHFVIDLHPKYDNVVIGAGFS--GHGFKL 345 (380)
T ss_pred HHHHHHHHHHHHC-CCC-CCCcceeeE--------------EEeccC--CCCCeeeecCCCCCCEEEEecCC--ccceec
Confidence 4567788899999 999 643221111 111111 11223344555689999887765 689998
Q ss_pred hhhhHHHHHHHHhchhc
Q 022805 266 VAASGAIVANSLVSVSQ 282 (292)
Q Consensus 266 v~~SG~~~A~~il~~~~ 282 (292)
+...|++.|+.|.+...
T Consensus 346 ~p~~g~~la~li~~~~~ 362 (380)
T TIGR01377 346 APVVGKILAELAMKLKP 362 (380)
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 89999999999987654
No 33
>PLN02529 lysine-specific histone demethylase 1
Probab=77.79 E-value=1.8 Score=45.37 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCC-CC-CC---ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCc-CCCCCCCC-CCcEEEeCCC
Q 022805 184 AERSEVIWRAVERALGPG-FS-RD---KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKE-TFPGHSTP-IPQLYCCGDS 256 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P~-l~-r~---~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~-~~~~~~T~-i~nLyl~G~~ 256 (292)
++..+.+++.|.++++|. .. .+ .+.......|. ..|+|......... .+..-..| ..+|||+|+.
T Consensus 500 eeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~--------s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEa 571 (738)
T PLN02529 500 STLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPL--------SYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEA 571 (738)
T ss_pred HHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCC--------CCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHH
Confidence 456778889999988331 20 12 22222222231 14665543211111 01111233 4689999999
Q ss_pred cCCCC--cchhhhhhHHHHHHHHhch
Q 022805 257 TFPGI--GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 257 ~~pG~--Gv~gv~~SG~~~A~~il~~ 280 (292)
|.+++ =|.||..||.-+|++|+..
T Consensus 572 Ts~~~pgtVeGAi~SG~RAA~eIl~~ 597 (738)
T PLN02529 572 TTRQYPATMHGAFLSGLREASRILHV 597 (738)
T ss_pred HhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence 97753 4889999999999999864
No 34
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.25 E-value=3.5 Score=41.69 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCCc-------CC--CCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~p--G~Gv~gv~~SG~~~A~~il~~ 280 (292)
...||||||.+|..+ .| |.++..++.+|++|++.+.+.
T Consensus 503 ~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 503 DGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 357999999999754 22 445667888999999888654
No 35
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=72.54 E-value=3.8 Score=43.40 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhCCC-C-C---CCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCc--CCCCCCCCC--CcEEEeC
Q 022805 184 AERSEVIWRAVERALGPG-F-S---RDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKE--TFPGHSTPI--PQLYCCG 254 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P~-l-~---r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~--~~~~~~T~i--~nLyl~G 254 (292)
++..+.+++.|.++++|. . . .+.+.+....-|.+ .|+|.... .++. ....-..|+ .+|||+|
T Consensus 580 eE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s--------~GSYS~~~-pG~~~~~~~~LaePv~~GRL~FAG 650 (808)
T PLN02328 580 VESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFT--------YGSYSYVA-VGSSGDDYDILAESVGDGRVFFAG 650 (808)
T ss_pred HHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCc--------CCCCCCCC-CCCchhHHHHHhccCCCCCEEEEE
Confidence 456778888899888331 1 0 12223333333322 35554322 1111 111112344 3799999
Q ss_pred CCcCCCC--cchhhhhhHHHHHHHHhch
Q 022805 255 DSTFPGI--GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 255 ~~~~pG~--Gv~gv~~SG~~~A~~il~~ 280 (292)
..|.... -|.||..||.-+|++|+..
T Consensus 651 EaTs~~~~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 651 EATNKQYPATMHGAFLSGMREAANILRV 678 (808)
T ss_pred hhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence 9987532 4889999999999999764
No 36
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=72.49 E-value=4.7 Score=40.98 Aligned_cols=38 Identities=29% Similarity=0.625 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCc-------CC--CCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~p--G~Gv~gv~~SG~~~A~~il~~ 280 (292)
..+||||||-+|..+ +| |.++..++.+|++|++.+.+.
T Consensus 524 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 570 (581)
T PRK06134 524 AGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGA 570 (581)
T ss_pred CCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhc
Confidence 357999999999532 33 223556788999999988754
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=71.83 E-value=11 Score=35.98 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+.+.+.+.+ |.+ .+ .+... ..|.+....+. .++.+. .+.+|||++.... |+|+.
T Consensus 328 ~~~~l~~~~~~~~-P~l-~~~~~~~~--------------w~G~r~~t~D~--~PiIG~-~~~~gl~~a~G~~--g~G~~ 386 (416)
T PRK00711 328 RRETLEMVVRDLF-PGG-GDLSQATF--------------WTGLRPMTPDG--TPIVGA-TRYKNLWLNTGHG--TLGWT 386 (416)
T ss_pred HHHHHHHHHHHHC-CCc-ccccccce--------------eeccCCCCCCC--CCEeCC-cCCCCEEEecCCc--hhhhh
Confidence 3456777888999 998 54 22211 12333322221 122222 2469999877665 78999
Q ss_pred hhhhhHHHHHHHHhchhc
Q 022805 265 AVAASGAIVANSLVSVSQ 282 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~~ 282 (292)
.+.++|.+.|+.|++...
T Consensus 387 ~ap~~g~~la~li~g~~~ 404 (416)
T PRK00711 387 MACGSGQLLADLISGRKP 404 (416)
T ss_pred hhhhHHHHHHHHHcCCCC
Confidence 999999999999987653
No 38
>PRK12839 hypothetical protein; Provisional
Probab=71.73 E-value=5.3 Score=40.56 Aligned_cols=38 Identities=32% Similarity=0.613 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCc-------CC--CCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~p--G~Gv~gv~~SG~~~A~~il~~ 280 (292)
..+||+|||-+|-.+ .| |..+..++.+|++|++.+.+.
T Consensus 521 dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 521 DDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 457999999999643 22 334556788899999988653
No 39
>PRK07121 hypothetical protein; Validated
Probab=70.79 E-value=4.9 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCCCCCcEEEeCCCcC--------CCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTF--------PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~--------pG~Gv~gv~~SG~~~A~~il~ 279 (292)
...||||||-+|-.+. .|.++..++.+|++|++.+.+
T Consensus 445 ~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 445 DGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 3579999999996541 344566788899999988764
No 40
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=70.19 E-value=5 Score=40.57 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=27.0
Q ss_pred CCCCCCcEEEeCCCc-------CC--CCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~p--G~Gv~gv~~SG~~~A~~il~ 279 (292)
...||||||-+|-.+ .+ |..+..++.+|++|++.+.+
T Consensus 510 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 510 DGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 457999999999876 22 22344567889999988764
No 41
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=69.67 E-value=4.5 Score=39.54 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=27.2
Q ss_pred CCCCCcEEEeCCCcC---------CCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTF---------PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~---------pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+||||||-+|..+. .|.++.-++..|++|++.+...
T Consensus 415 g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 415 GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 469999999996641 1345666778899999888653
No 42
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=68.99 E-value=5.1 Score=38.81 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCCCCCcEEEeCCCc---CC------CCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDST---FP------GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~---~p------G~Gv~gv~~SG~~~A~~il~ 279 (292)
...||||||-+|-.+ .. |.++..++..|++|++.+.+
T Consensus 383 ~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~ 428 (432)
T TIGR02485 383 DAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAAR 428 (432)
T ss_pred CCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHH
Confidence 457999999999643 11 34566677889988888754
No 43
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=65.99 E-value=6.6 Score=39.84 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=26.1
Q ss_pred CCCCCCcEEEeCCCc-------CC--CCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~p--G~Gv~gv~~SG~~~A~~il~ 279 (292)
...||+|||-+|-.+ .| |.++..++..|++|++.+.+
T Consensus 518 dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 518 DGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 357999999999553 22 22355577789999888754
No 44
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.68 E-value=8.7 Score=38.50 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCCCCceeEEEe---CCHHHHHHHhcCCCCCCCCccCCCCc-CCCCCCCCCCc-EEEeC
Q 022805 182 LKAERSEVIWRAVERALGP--GFSRDKCDVKLV---GTPLTHQRFLRRNRGTYGPAIQAGKE-TFPGHSTPIPQ-LYCCG 254 (292)
Q Consensus 182 ~K~~~a~~ll~~le~~~~P--~l~r~~I~~~~~---~TPlT~~~y~~~~~GsyG~a~~~~~~-~~~~~~T~i~n-Lyl~G 254 (292)
-+++..+..+..+++.+ + .. .+-+....+ .-+. ..|+|-........ .+...+.|+.| +|++|
T Consensus 361 ~~~~~~~~~~~~l~k~f-~~~~~-~~p~~~~vt~w~~d~~--------~~gsys~~~~~~~~~~y~~l~~pi~~~~ffag 430 (501)
T KOG0029|consen 361 SDSEIVKKAMKLLRKVF-GSEEV-PDPLDALVTRWGTDPL--------SGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAG 430 (501)
T ss_pred CHHHHHHHHHHHHHHHh-ccCcC-CCccceeeeeeccccc--------CCccccccCCCCChhHHHHHhccccCcEEecc
Confidence 35677888899999999 7 22 333332221 1111 23443222211111 12334789999 99999
Q ss_pred CCcCCC--CcchhhhhhHHHHHHHHhch
Q 022805 255 DSTFPG--IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 255 ~~~~pG--~Gv~gv~~SG~~~A~~il~~ 280 (292)
..|.-. +-+.|+.+||..+|..|+..
T Consensus 431 e~t~~~~~~tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 431 EATSRKYPGTMHGAYLSGLRAASDILDS 458 (501)
T ss_pred hhhcccCCCchHHHHHhhHHHHHHHHHH
Confidence 887432 36889999999999998753
No 45
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=65.26 E-value=33 Score=32.62 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCc-eeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRDK-CDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~~-I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+++.+.+++ |++ .+. |.... .|.++...+. .+..+. .+.+|||++.... |+|+.
T Consensus 311 ~~~~l~~~~~~~~-P~l-~~~~~~~~w--------------~G~~~~t~D~--~PiIg~-~~~~gl~~a~G~~--g~G~~ 369 (407)
T TIGR01373 311 TLEHVLAAILEMF-PIL-SRVRMLRSW--------------GGIVDVTPDG--SPIIGK-TPLPNLYLNCGWG--TGGFK 369 (407)
T ss_pred HHHHHHHHHHHhC-CCc-CCCCeEEEe--------------ccccccCCCC--CceeCC-CCCCCeEEEeccC--Ccchh
Confidence 4567788889999 999 653 32221 2333333321 122222 2469999887554 78999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+...|++.|+.|++..
T Consensus 370 ~ap~~G~~la~li~~~~ 386 (407)
T TIGR01373 370 ATPASGTVFAHTLARGE 386 (407)
T ss_pred hchHHHHHHHHHHhCCC
Confidence 99999999999998653
No 46
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=63.28 E-value=8.7 Score=39.12 Aligned_cols=38 Identities=26% Similarity=0.576 Sum_probs=27.2
Q ss_pred CCCCCCcEEEeCCCc-------CCCCc--chhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~pG~G--v~gv~~SG~~~A~~il~~ 280 (292)
..+||||||-+|..+ .+|.| +-.++.+|++|++.+.+.
T Consensus 523 ~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 523 DDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 458999999999553 22223 455678899999888654
No 47
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=63.11 E-value=7.1 Score=38.98 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=28.3
Q ss_pred CCCCCCcEEEeCCCc-------CCC--CcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FPG--IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~pG--~Gv~gv~~SG~~~A~~il~~ 280 (292)
...||||||-+|..+ .|| .++..++..|++|++.+.++
T Consensus 465 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 465 DGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred CCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 357999999999864 232 23566788999999988664
No 48
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=62.61 E-value=9.8 Score=38.63 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=25.7
Q ss_pred CCCCCCcEEEeCCCc-------CCCCc--chhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~-------~pG~G--v~gv~~SG~~~A~~il~~ 280 (292)
..++|||||-+|..+ .||.| +..++..|++|++.+.+.
T Consensus 525 dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 525 DGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 457999999999443 22223 334677899988888643
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=62.40 E-value=5.8 Score=39.98 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCCcEEEeCCCcCC---------CCcchhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFP---------GIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~p---------G~Gv~gv~~SG~~~A~~il 278 (292)
|+|||||-+|..+.- |.++..++.+|++|++.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999997521 1245566778888888774
No 50
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=61.73 E-value=8.2 Score=38.86 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCCCCcEEEeCCCcC------C------CCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTF------P------GIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~------p------G~Gv~gv~~SG~~~A~~il 278 (292)
..+||||||-+|..+- . |..+-.++.+|++|++.+.
T Consensus 500 dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa 547 (549)
T PRK12834 500 DGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA 547 (549)
T ss_pred CCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHh
Confidence 3579999999998862 1 2234446677888887764
No 51
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=61.67 E-value=57 Score=32.26 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.2
Q ss_pred CcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 248 PQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 248 ~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|+++|.+.. |.||.=|.+||..+|.++.
T Consensus 461 ~~l~l~G~~y~-Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 461 LGLFLGGNHYG-GVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CceEeeccccC-CCChhHHHHhhHHHHHhhc
Confidence 48999999885 7899999999999998875
No 52
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=61.55 E-value=35 Score=32.26 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchhch
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH 283 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~~~ 283 (292)
+..+|||++.... |+|+..+.+.|...|+.|++....
T Consensus 329 ~~~~g~~~a~G~~--g~G~~~ap~~g~~la~~i~~~~~~ 365 (381)
T TIGR03197 329 PYYPGLYVLGGLG--SRGLTSAPLAAEILAAQICGEPLP 365 (381)
T ss_pred CCCCCeEEEeccc--chHHHHHHHHHHHHHHHHhCCCCC
Confidence 3489999887765 789999999999999999876543
No 53
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=61.46 E-value=6.8 Score=39.85 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCCCCCCcEEEeCCCcCC---------CCcchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTFP---------GIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~p---------G~Gv~gv~~SG~~~A~~il 278 (292)
..+|+|||||-+|..+.- |.++..++..|++|++.+.
T Consensus 366 ~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 411 (582)
T PRK09231 366 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAA 411 (582)
T ss_pred CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 346999999999986521 1235556777888887764
No 54
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=60.78 E-value=29 Score=33.02 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 185 ERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 185 ~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
+..+.+++.+.+++ |++ ++.... .| .|.+....+. .+..+. .+.+|||++-.. -|+|+.
T Consensus 332 ~~~~~l~~~~~~~~-P~l-~~~~~~----------~w----~G~r~~t~D~--~PiiG~-~~~~~l~~~~G~--~~~G~~ 390 (410)
T PRK12409 332 DRIRPLVDWVRRNF-PDV-STRRVV----------PW----AGLRPMMPNM--MPRVGR-GRRPGVFYNTGH--GHLGWT 390 (410)
T ss_pred HHHHHHHHHHHHhC-CCC-Cccccc----------ee----cccCCCCCCC--CCeeCC-CCCCCEEEecCC--cccchh
Confidence 35667889999999 999 654321 11 2333333221 122232 347999987654 357999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+...|...|+.|++..
T Consensus 391 ~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 391 LSAATADLVAQVVAQKL 407 (410)
T ss_pred hcccHHHHHHHHHcCCC
Confidence 99999999999997643
No 55
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.90 E-value=8.1 Score=39.25 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.|+|||||-+|..+..| +| +..++..|++|++.+.
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 37899999999976311 23 5557777888877764
No 56
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=59.77 E-value=32 Score=32.18 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
....+++.+.+++ |.+ .+ .+... ..|.+.... +...++.+...+.+|||++.... |+|+.
T Consensus 291 ~~~~l~~~~~~~~-P~l-~~~~~~~~--------------w~g~~~~t~-pd~~P~iG~~~~~~~l~~a~G~~--~~G~~ 351 (387)
T COG0665 291 VIAELLRVARALL-PGL-ADAGIEAA--------------WAGLRPPTT-PDGLPVIGRAAPLPNLYVATGHG--GHGFT 351 (387)
T ss_pred hHHHHHHHHHHhC-ccc-ccccccee--------------eeccccCCC-CCCCceeCCCCCCCCEEEEecCC--CcChh
Confidence 3457888999999 999 54 33331 122222220 11223344333399999997775 67999
Q ss_pred hhhhhHHHHHHHHhchhch
Q 022805 265 AVAASGAIVANSLVSVSQH 283 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~~~ 283 (292)
-....|++.|+.|++.+..
T Consensus 352 ~~p~~g~~lA~li~g~~~~ 370 (387)
T COG0665 352 LAPALGRLLADLILGGEPE 370 (387)
T ss_pred hccHHHHHHHHHHcCCCCC
Confidence 8889999999999986543
No 57
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=59.67 E-value=20 Score=35.33 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=28.8
Q ss_pred ccCCC--ceecccChhhHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 022805 3 YIPEG--EFLSRIGPTEFYKDLEKYASKNAVQDWKKLLDAILPLSA 46 (292)
Q Consensus 3 ~~p~~--~~~~~~g~~~f~~~l~~~f~p~~~~~~~~~~~~~~~~~~ 46 (292)
++++| .+.+..+.++|+++|.+.| |++.+ |++.++.+++
T Consensus 90 ~~~dg~~~~~~~~d~~~~~~~l~~~~-p~~~~----~~~~~~~~~~ 130 (492)
T TIGR02733 90 DLPDGSEPIPLWHDPDRWQKERERQF-PGSER----FWQLCSQLHQ 130 (492)
T ss_pred EECCCceEeeeecCHHHHHHHHHHHC-CChHH----HHHHHHHHHH
Confidence 46666 5778899999999999999 88754 5555555443
No 58
>PRK08401 L-aspartate oxidase; Provisional
Probab=58.80 E-value=9.2 Score=37.64 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCCCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il~ 279 (292)
.+|+|||||-+|..+.-| +| +..++..|+.|++.+..
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 468999999999986311 22 22256778888887754
No 59
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=57.45 E-value=11 Score=38.24 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
|+|||||-+|..+.-| +| +..++.+|++|++.+.
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa 393 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAA 393 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 7999999999976311 33 5556778888888774
No 60
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.41 E-value=9.9 Score=38.82 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.|+|||||-+|..+.-| || +..++..|++|++.+.
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 425 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAA 425 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHH
Confidence 37899999999976311 33 5567788888888775
No 61
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=56.86 E-value=10 Score=38.64 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEeCCCcCCC---------CcchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTFPG---------IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG---------~Gv~gv~~SG~~~A~~il 278 (292)
..+|+|||||-+|..+.-| .++..+++.|++|+..+.
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa 410 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA 410 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 3469999999999865222 244556778888888775
No 62
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.27 E-value=12 Score=38.07 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
|+|||||-+|..+.-| || +..++..|++|++.+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 5899999999975311 33 4566778888887764
No 63
>PRK08275 putative oxidoreductase; Provisional
Probab=56.21 E-value=8.8 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=27.4
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il 278 (292)
.+|.|+|||-||+.+..| ..+..++..|..|+..+.
T Consensus 365 ~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 365 AETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 479999999999986533 356667778888777764
No 64
>PRK09077 L-aspartate oxidase; Provisional
Probab=56.06 E-value=11 Score=37.88 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHhc
Q 022805 242 GHSTPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il~ 279 (292)
..+|+|||||-+|..+.-| | ++..++..|++|++.+..
T Consensus 361 ~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 361 HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 3468999999999976211 2 355566778888887754
No 65
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.98 E-value=9.4 Score=39.23 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCCCcEEEeCCCcC--------CCCcchhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTF--------PGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~--------pG~Gv~gv~~SG~~~A~~il 278 (292)
+|+|||||-+|..+. .|..+..++..|++|++.+.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAA 444 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHH
Confidence 589999999998652 12234556667888766654
No 66
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=55.83 E-value=10 Score=37.45 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=26.7
Q ss_pred CCCCCCCcEEEeCCCcC--C-------CCcchhhhhhHHHHHHHHhc
Q 022805 242 GHSTPIPQLYCCGDSTF--P-------GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~--p-------G~Gv~gv~~SG~~~A~~il~ 279 (292)
..+|+|||||-+|..+. + |.++..+++.|++|++.+..
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 34689999999999752 1 12345567788888888753
No 67
>PRK06175 L-aspartate oxidase; Provisional
Probab=55.47 E-value=9.3 Score=37.30 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEeCCCcC--C-------CCcchhhhhhHHHHHHHHhc
Q 022805 242 GHSTPIPQLYCCGDSTF--P-------GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~--p-------G~Gv~gv~~SG~~~A~~il~ 279 (292)
..+|+|||||-+|-.+. . |.++..+++.|++|++.+..
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999752 1 11244467788888887743
No 68
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.41 E-value=10 Score=38.09 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCCCCcEEEeCCCcC-C-------CCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTF-P-------GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-p-------G~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|+|||||-+|..+. . |.++..++.+|++|++.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 4699999999998651 1 12244567788888888753
No 69
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.92 E-value=11 Score=38.11 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=25.5
Q ss_pred CCCCCcEEEeCCCcCC---------CCcchhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTFP---------GIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~p---------G~Gv~gv~~SG~~~A~~il 278 (292)
.|+|||||-+|..+.- |.++..++..|++|++.+.
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 410 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 3689999999997631 1235667778888888775
No 70
>PRK07395 L-aspartate oxidase; Provisional
Probab=54.89 E-value=7.2 Score=39.42 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=23.4
Q ss_pred hhhHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHhhcC
Q 022805 15 PTEFYKDLEKY-ASKNAVQDWKKLLDAILPLSATATAL 51 (292)
Q Consensus 15 ~~~f~~~l~~~-f~p~~~~~~~~~~~~~~~~~~~~~~~ 51 (292)
.+.|.+.+.+. -+....+-++.|++...+..+++..+
T Consensus 64 ~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~wL~~~ 101 (553)
T PRK07395 64 PKLHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEM 101 (553)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555433 23455677888888887777776653
No 71
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=54.64 E-value=13 Score=33.36 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.8
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il 278 (292)
.+|.+||+|.+||.+..+ .-+..++..|..+|..|.
T Consensus 261 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 368899999999999621 235567788999998875
No 72
>PRK12831 putative oxidoreductase; Provisional
Probab=54.55 E-value=13 Score=36.61 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|.++|+|.+||.+..-..+.-++..|+.||..|.
T Consensus 422 ~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 468899999999998632346677889999998884
No 73
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=54.31 E-value=8.1 Score=35.26 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCC
Q 022805 182 LKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGI 261 (292)
Q Consensus 182 ~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~ 261 (292)
..++ .+.+++.+++++ |+++...+.....+ .+-...+ ..++.+..+..+|||+++... |+
T Consensus 284 ~~~~-~~~l~~~~~~~~-p~l~~~~v~~~~~g--------------~r~~t~d--~~p~ig~~~~~~~l~~~~g~~--~~ 343 (358)
T PF01266_consen 284 VDEE-IDELLERLARLL-PGLGDAEVVRSWAG--------------IRPFTPD--GRPIIGELPGSPNLYLAGGHG--GH 343 (358)
T ss_dssp HHHH-HHHHHHHHHHHS-GGGGGSEEEEEEEE--------------EEEEETT--SECEEEEESSEEEEEEEECET--TC
T ss_pred ccHH-HHHhHHHHHHHH-HHhhhccccccccc--------------eeeeccC--CCeeeeecCCCCCEEEEECCC--ch
Confidence 3444 779999999999 99933344434332 1000011 112223346789999996554 67
Q ss_pred cchhhhhhHHHHHH
Q 022805 262 GVPAVAASGAIVAN 275 (292)
Q Consensus 262 Gv~gv~~SG~~~A~ 275 (292)
|+..+.++|.++|+
T Consensus 344 G~~~a~~~a~~~a~ 357 (358)
T PF01266_consen 344 GFTLAPGLAELLAD 357 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888876
No 74
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=52.72 E-value=12 Score=36.37 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=28.2
Q ss_pred CCcEEEeCCCc---C----CCCcchhhhhhHHHHHHHHhc
Q 022805 247 IPQLYCCGDST---F----PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 247 i~nLyl~G~~~---~----pG~Gv~gv~~SG~~~A~~il~ 279 (292)
-+|++++||.+ . -|.||..++.||.+||+.|..
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~ 333 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLS 333 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHH
Confidence 47999999987 2 368999999999999999865
No 75
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=52.35 E-value=12 Score=29.85 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=19.4
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHHHH
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANS 276 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~ 276 (292)
-.++|||.++.|++|-.+-.--.++.+..|++
T Consensus 112 ~g~~nL~V~DaSv~P~~~~~np~~t~~ala~r 143 (144)
T PF05199_consen 112 HGVRNLRVADASVFPTSPGANPTLTIMALAER 143 (144)
T ss_dssp TTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHH
T ss_pred eeeeeEEECCCCcCCCCCCcCcHHHHHHHeeC
Confidence 47999999999999964322223444444443
No 76
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.30 E-value=10 Score=38.44 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il 278 (292)
++|||||-+|..+.-| | ++..++.+|++|++.+.
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4599999999986311 2 24556777888877664
No 77
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=52.14 E-value=31 Score=35.49 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.0
Q ss_pred CCC-CCcEEEeCCCcCCCCcchhhhhhHHHHH
Q 022805 244 STP-IPQLYCCGDSTFPGIGVPAVAASGAIVA 274 (292)
Q Consensus 244 ~T~-i~nLyl~G~~~~pG~Gv~gv~~SG~~~A 274 (292)
.|+ ++|||++||-..- .|..-++.+|.+|+
T Consensus 353 e~k~~~gLf~AGqi~Gt-~Gy~eAaa~Gl~Ag 383 (617)
T TIGR00136 353 ETKLIQGLFFAGQINGT-TGYEEAAAQGLMAG 383 (617)
T ss_pred eeCCCCCeEEccccCCc-chHHHHHHHHHHHH
Confidence 455 9999999996642 46666666666554
No 78
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=51.30 E-value=12 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
|+|||||-||..+.-| || +..++..|++|++.+.
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 7899999999975311 33 4556778888887764
No 79
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=51.20 E-value=15 Score=34.73 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCCCCcEEEeCCCcCCCC----cchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI----GVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~----Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|..||+|.+||++...+ -+..+...|..+|+.|++..
T Consensus 261 l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 261 LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred cccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 4688999999999996521 13346778999999998754
No 80
>PRK06116 glutathione reductase; Validated
Probab=51.03 E-value=19 Score=35.08 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+-+...|..+|+.|++.
T Consensus 291 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 36899999999999843233445667899999999864
No 81
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=50.91 E-value=12 Score=37.15 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=26.0
Q ss_pred CCCCCCcEEEeCCCc---C-----CCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~---~-----pG~Gv~gv~~SG~~~A~~il~ 279 (292)
..+||||||-+|-.+ | .|.++..++.+|++|++.+.+
T Consensus 457 ~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 457 DGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred CCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 347999999999864 1 123455567788888887754
No 82
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.36 E-value=13 Score=37.91 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCCCCCcEEEeCCCcC--------CCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTF--------PGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~--------pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|+|||||-+|..+. .|.++..++..|++|++.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999752 11234556677877777664
No 83
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=49.52 E-value=15 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
|+|||||-+|..+.-| || +..++..|++|++.+.
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa 463 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA 463 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 7899999999976211 33 5567788999988775
No 84
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=49.14 E-value=9.1 Score=37.04 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=12.1
Q ss_pred CCCCCcEEEeCCCc
Q 022805 244 STPIPQLYCCGDST 257 (292)
Q Consensus 244 ~T~i~nLyl~G~~~ 257 (292)
.++|||||.+|..+
T Consensus 400 g~~IpGLyAaG~~~ 413 (439)
T TIGR01813 400 GKPIPGLFAAGEVT 413 (439)
T ss_pred CCEecccEEeeecc
Confidence 47999999999965
No 85
>PRK08071 L-aspartate oxidase; Provisional
Probab=48.89 E-value=14 Score=36.87 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il 278 (292)
.+|+|||||-+|..+.-| + ++..+++.|++|++.+.
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa 385 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHIL 385 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 468999999999976211 2 23445677888888774
No 86
>PLN02507 glutathione reductase
Probab=48.50 E-value=19 Score=35.76 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 242 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
..+|.+||+|.+||.+..-.-.+.+...|+.+|+.|++.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 346999999999999964345666778899999999864
No 87
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=48.46 E-value=19 Score=35.47 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+....-+..++..|+.+|..|..
T Consensus 427 ~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 427 QTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred cCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 588999999999996422355677799999988854
No 88
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=48.14 E-value=17 Score=37.22 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCCCCcEEEeCCCcCC---C------CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFP---G------IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~p---G------~Gv~gv~~SG~~~A~~il~ 279 (292)
.|+|||||-+|..+.- | .++..++..|++|++.+..
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~ 443 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVME 443 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 3689999999997521 1 2355677788888887753
No 89
>PRK07512 L-aspartate oxidase; Provisional
Probab=48.03 E-value=13 Score=37.24 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il~ 279 (292)
.+|+|||||-+|..+.-| + ++..++..|+++++.+..
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999975211 1 234456677777777643
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=47.90 E-value=26 Score=33.55 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCcEEEeCCCcC-----CCCcchhhhhhHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~-----pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.--+|+.++||.+. -|.|+.-++.||++||+.|.+.
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~ 306 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396)
T ss_pred cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 45679999999874 3679999999999999999875
No 91
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=47.87 E-value=42 Score=33.01 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhh----hHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAA----SGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~----SG~~~A~~il~~ 280 (292)
..++||||+||=+.- -|..=++. +|+++|..+.++
T Consensus 327 k~~~~lf~AGQi~G~-~GY~Eaaa~Gl~agina~~~~~~~ 365 (433)
T TIGR00137 327 KDRQTLFFAGQLTGV-EGYVASTAGGWLAGINAARLALGE 365 (433)
T ss_pred CCCCCEEECcccccc-hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 358999999999843 35443444 455666666554
No 92
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=46.67 E-value=23 Score=34.61 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|.+||.+..-.-.+-+...|+.+|+.|++
T Consensus 291 ~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 4689999999999985423455667789999999985
No 93
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=46.65 E-value=24 Score=34.34 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....=.+-+...|+++|+.|++.
T Consensus 289 ~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 46899999999999964222334566889999999863
No 94
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=46.54 E-value=20 Score=35.03 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=27.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|.++|+|.+||.+....-+.-++..|+.+|..|.
T Consensus 411 ~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 468899999999998532235567778889988874
No 95
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.20 E-value=21 Score=36.16 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=25.8
Q ss_pred CCCC-CCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 243 HSTP-IPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~-i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.+|+ |||||-+|..+.-| || +..++..|++|++.+.
T Consensus 355 ~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 355 GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVV 400 (566)
T ss_pred CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 4576 99999999986311 33 5667778888877764
No 96
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=45.95 E-value=1.2e+02 Score=30.00 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCCCCCCCCCCceEEEEEccC-CCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEE
Q 022805 132 DQNVVLISVPSVLSPDLAPPGKHVLHAYTPG-TEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVK 210 (292)
Q Consensus 132 ~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~-~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~ 210 (292)
+....+++.||. +.. +|+-++.- ..+ -.+...|..++. +++.+.++..+++++ |+...+.+...
T Consensus 313 D~~~~~i~~~s~-~~~---~G~gVl~g-~~~~g~~A~~~~~~~~---------~~r~~~vl~~l~~~~-g~~a~~~f~~~ 377 (450)
T COG1231 313 DLGLGFISYPSA-PFA---DGPGVLLG-SYAFGDDALVIDALPE---------AERRQKVLARLAKLF-GDEAADPFDYG 377 (450)
T ss_pred cCCcceEecCcc-ccC---CCceEEEe-eeeccccceeEecCCH---------HHHHHHHHHhHhhhC-Chhhccccccc
Confidence 445667777765 322 45444443 222 355677877632 356778899999999 85414444331
Q ss_pred EeCCHHHHHHHhcCCCCCCCCccCCCCc--CCCCCCCCCCcEEEeC---CCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 211 LVGTPLTHQRFLRRNRGTYGPAIQAGKE--TFPGHSTPIPQLYCCG---DSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 211 ~~~TPlT~~~y~~~~~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G---~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.. .+|-+.-.+ .| +-.+....+. ..+--..|..-++++| ++-++ +=+-|++.||..+|.+|...
T Consensus 378 ~~---~~W~~dpwt-~G-~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~eGAi~Sg~~AA~ei~~~ 446 (450)
T COG1231 378 AS---VDWSKDPWT-LG-GTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWLEGAIRSGQRAAAEIHAL 446 (450)
T ss_pred ee---eecccCCcC-Cc-cccccCCcccccccccccCCCCceEEeeeccccccc-chhHHHHHHHHHHHHHHHHh
Confidence 11 112211111 12 1111112221 2233346778899999 44444 35889999999999999653
No 97
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.94 E-value=19 Score=35.77 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.....+.-++..|+.||..|..
T Consensus 440 ~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999985323355567788999888853
No 98
>PRK10262 thioredoxin reductase; Provisional
Probab=45.80 E-value=15 Score=33.82 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|-+||.+..+. =+..++-.|..||..|..
T Consensus 275 ~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred cccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 4699999999999995422 255566788888888753
No 99
>PRK13748 putative mercuric reductase; Provisional
Probab=45.76 E-value=22 Score=35.56 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.-++.+...|..+|..|++.
T Consensus 391 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 46899999999999853234556677899999999864
No 100
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=45.46 E-value=32 Score=33.85 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCcCCCCcchhhhhhHHHHHHHH
Q 022805 246 PIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277 (292)
Q Consensus 246 ~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~i 277 (292)
.++|||++||-+-- -|..=++.+|.+|+..+
T Consensus 329 ~~~~l~~AGqi~g~-~Gy~ea~a~G~~Ag~n~ 359 (436)
T PRK05335 329 KRPNLFFAGQITGV-EGYVESAASGLLAGINA 359 (436)
T ss_pred CCCCEEeeeeecCc-hHHHHHHHHHHHHHHHH
Confidence 68999999999833 36665666666655444
No 101
>PRK14694 putative mercuric reductase; Provisional
Probab=44.43 E-value=25 Score=34.50 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+..-.=++-+...|..+|..|++..
T Consensus 298 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 468999999999998542345566778899999997643
No 102
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=44.06 E-value=23 Score=34.61 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.+..-+.-++..|..+|..|..
T Consensus 413 ~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred CccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 4688999999999985322355677788888888753
No 103
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=44.04 E-value=25 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.-...+...|..+|..|++.
T Consensus 298 ~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 36889999999998842133555778899999999864
No 104
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=43.93 E-value=16 Score=36.48 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|.+||.+. |..-+.-++..|..||..|..
T Consensus 473 ~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 473 GRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 4689999999999986 323366778899999988754
No 105
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.85 E-value=24 Score=36.39 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+....-+.-++..|+.||..|..
T Consensus 613 ~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred cccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3689999999999986422346677899999999853
No 106
>PLN02815 L-aspartate oxidase
Probab=43.81 E-value=19 Score=36.84 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCCCCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il 278 (292)
..+|+|||||-+|..+.-| | ++..+++.|++|++.+.
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3468999999999976211 2 24446677888887764
No 107
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.68 E-value=19 Score=36.69 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=25.5
Q ss_pred CCCCcEEEeCCCcCCC-C--------cchhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTFPG-I--------GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG-~--------Gv~gv~~SG~~~A~~il~ 279 (292)
++|||||-+|..+.-| | ++..++..|++|++.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4899999999976311 2 356677888888887753
No 108
>PRK14727 putative mercuric reductase; Provisional
Probab=43.31 E-value=25 Score=34.63 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.=++.+...|..+|..|++.
T Consensus 309 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 309 METSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred eecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 36899999999999843133556677899999999864
No 109
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=42.97 E-value=20 Score=36.69 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCCCCCCcEEEeCCCcCCCC--------cchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTFPGI--------GVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG~--------Gv~gv~~SG~~~A~~il 278 (292)
..+|.|||||.+|..+.--| .+..+++.|..|+..+.
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 34689999999999752112 33456667777776654
No 110
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.91 E-value=19 Score=38.58 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il 278 (292)
..+|.|||||-||+.+. +...+.+++.-|..++..+.
T Consensus 369 ~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 369 HARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred CCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 34789999999999753 33467777788888877764
No 111
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=42.91 E-value=26 Score=38.23 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.....+.-++..|+.||..|..
T Consensus 716 ~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~ 752 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIAT 752 (1006)
T ss_pred cCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 3689999999999985333467778899999999853
No 112
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=42.42 E-value=26 Score=38.27 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+. | ..+..++..|+.||..|++..
T Consensus 801 ~~Ts~pgVFAaGD~a~GP-~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANRGP-ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCCCc-cHHHHHHHHHHHHHHHHhccc
Confidence 3588999999999984 4 457778889999999998653
No 113
>PRK13984 putative oxidoreductase; Provisional
Probab=41.80 E-value=26 Score=35.68 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=29.1
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|.++|+|.+||.+. |..+.-++..|+.||..|.
T Consensus 564 ~~Ts~~gVfAaGD~~~-~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 564 GQTSIPWLFAGGDIVH-GPDIIHGVADGYWAAEGID 598 (604)
T ss_pred CccCCCCEEEecCcCC-chHHHHHHHHHHHHHHHHH
Confidence 4688999999999996 4567777888999998885
No 114
>PRK06370 mercuric reductase; Validated
Probab=41.69 E-value=31 Score=33.70 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+.+..-...+...|.++|+.|++.
T Consensus 297 l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 46899999999999865333445666888999999864
No 115
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=41.61 E-value=29 Score=34.48 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhC----CCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCcc--------CCCCcCCC-CCCCCCCcE
Q 022805 184 AERSEVIWRAVERALG----PGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI--------QAGKETFP-GHSTPIPQL 250 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~----P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~--------~~~~~~~~-~~~T~i~nL 250 (292)
++..+.+...+.+.+. |.. +..+.....+.|. .+|||.+-. ...+.+.| ...++=+.+
T Consensus 388 Eev~e~~~~~lr~fl~n~~iP~p-~kilRs~W~snp~--------frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I 458 (498)
T KOG0685|consen 388 EEVLEGLTKLLRKFLKNPEIPKP-KKILRSQWISNPF--------FRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQI 458 (498)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCc-hhhhhhcccCCCc--------cCceeeEeeccccccccchhhccCCccccCCCceE
Confidence 3455566666666652 333 3445555566664 356654322 11122333 234667789
Q ss_pred EEeCCCcCCCC--cchhhhhhHHHHHHHHhc
Q 022805 251 YCCGDSTFPGI--GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 251 yl~G~~~~pG~--Gv~gv~~SG~~~A~~il~ 279 (292)
.|+|-.||.-. =+.|+..||+--|++++.
T Consensus 459 ~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 459 LFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred EEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 99999997642 688999999999999986
No 116
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=40.93 E-value=29 Score=34.17 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=26.9
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
+|.++|+|.+||.+.+..-+..++..|+.+|..|.
T Consensus 428 ~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred cCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 57899999999998643334556778888888875
No 117
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=40.35 E-value=31 Score=33.51 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 242 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
..+|.+||+|.+||.+....-..-+..-|..+|..|.+
T Consensus 293 ~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 34689999999999995433445567788899999886
No 118
>PLN02852 ferredoxin-NADP+ reductase
Probab=40.20 E-value=24 Score=35.34 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=27.3
Q ss_pred CCCCCcEEEeCCCcCCCCcchh-hhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPA-VAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~g-v~~SG~~~A~~il~~ 280 (292)
.|.++|+|.+||...-..|+.+ .+.-|..|++.|+..
T Consensus 383 ~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAED 420 (491)
T ss_pred ccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHH
Confidence 3889999999999973245554 455677888888754
No 119
>PLN02546 glutathione reductase
Probab=39.66 E-value=31 Score=34.96 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|-+||.+..-.-.+-+...|.++|+.|++.
T Consensus 376 l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 46899999999999964334555667788899888864
No 120
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=39.57 E-value=25 Score=36.14 Aligned_cols=36 Identities=0% Similarity=-0.165 Sum_probs=22.6
Q ss_pred hhHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHhhcC
Q 022805 16 TEFYKDLEKY-ASKNAVQDWKKLLDAILPLSATATAL 51 (292)
Q Consensus 16 ~~f~~~l~~~-f~p~~~~~~~~~~~~~~~~~~~~~~~ 51 (292)
|.+.+...+. .|-...+-++.|++...+.-+++..+
T Consensus 64 e~~~~d~~~~~~gl~d~~lV~~lv~~s~~~i~~L~~~ 100 (614)
T TIGR02061 64 EDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEW 100 (614)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 4444443332 34555677888888888877777664
No 121
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=38.80 E-value=33 Score=37.31 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.|.++|+|.+||.+.. .++..++..|..||..|.
T Consensus 435 ~t~v~gVyaaGD~~g~-~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 435 GDAVQGCILAGAANGL-FGLAAALADGAAAGAAAA 468 (985)
T ss_pred CCCCCCeEEeeccCCc-cCHHHHHHHHHHHHHHHH
Confidence 4779999999998865 588888999999998885
No 122
>PRK10015 oxidoreductase; Provisional
Probab=38.60 E-value=28 Score=33.83 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCCCCcEEEeCCCcC-------CCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-------pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+.--+|+.++||.+. -|.|+..++.||.+||+.|.+
T Consensus 291 ~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~ 333 (429)
T PRK10015 291 QLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA 333 (429)
T ss_pred ccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHH
Confidence 344679999999762 257999999999999999964
No 123
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=38.56 E-value=34 Score=33.68 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+..-.-..-+...|..+|+.|.+..
T Consensus 310 ~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 368899999999998521334456667889999998643
No 124
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=38.09 E-value=36 Score=33.41 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+..-.-...+..-|.++++.|++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 46899999999999953233455667888899888864
No 125
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=37.89 E-value=35 Score=33.58 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.-..-+..-|..+|+.|++.
T Consensus 300 ~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred cccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 36899999999999842123445667888999999864
No 126
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=37.13 E-value=40 Score=33.47 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.+-.=++-+...|.++|+.|++.
T Consensus 314 l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 36899999999999964233455667888999999864
No 127
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=36.91 E-value=28 Score=34.66 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il 278 (292)
.+|.+||+|.+||.+... .-+..++..|..||..+.
T Consensus 472 l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 472 GATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred CCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 468999999999998632 236666778888887764
No 128
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=36.75 E-value=39 Score=32.82 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
+|.++|+|.+||.+.+-.-...+...|..+|+.|.+..
T Consensus 296 ~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 68899999999998532334556678999999998654
No 129
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=36.73 E-value=37 Score=31.84 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+. | .=+..++..|..+|..|..
T Consensus 312 ~t~~~~vyaiGD~~~~~-~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 312 MTSREGVFAAGDVVTGP-SKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred ccCCCCEEEEcccccCc-chHHHHHHHHHHHHHHHHH
Confidence 478999999999986 3 2344466678888888754
No 130
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=36.67 E-value=29 Score=33.71 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCCC-CCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTP-IPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~-i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
-.|+ ++|||++||-+-- -|..=++.+|.+|+..+.
T Consensus 350 l~~k~~~~lf~AGqi~G~-~Gy~eaaa~G~~ag~na~ 385 (392)
T PF01134_consen 350 LETKKIPGLFFAGQINGT-EGYEEAAAQGLIAGINAA 385 (392)
T ss_dssp SBBSSSBTEEE-GGGGTB--SHHHHHHHHHHHHHHHH
T ss_pred eEECCCCCceECCCCcch-hHHHHHHHHHHHHHHHHH
Confidence 3455 9999999999854 576666677776665543
No 131
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=36.57 E-value=33 Score=35.94 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=28.5
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+....-+.-++..|+.||..|..
T Consensus 712 ~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 712 QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 688999999999986323466677899999998853
No 132
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=36.47 E-value=39 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+.+..=..-+...|..+|..|++.
T Consensus 292 ~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 46899999999999964222344556788999998864
No 133
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=36.40 E-value=30 Score=35.82 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCC-CCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 243 HST-PIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T-~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.+| +|||||-||..+.-| || +..++..|++|++.+.
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa 426 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA 426 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 356 699999999986311 23 3456677787777664
No 134
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=36.18 E-value=38 Score=30.57 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=26.2
Q ss_pred CCCCCcEEEeCCCcC-------CCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-------pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+-=+||||.||=.+. +|+=+-|-++||+.+|+.|+++
T Consensus 209 ~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 209 REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHH
Confidence 334999999996553 3332335567999999999864
No 135
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.15 E-value=41 Score=32.93 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=28.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.-...+...|..+|..|++.
T Consensus 299 ~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 46899999999999843123444566888999999864
No 136
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=35.87 E-value=38 Score=30.60 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCcEEEeCCCcC-------CCCcchhhhhhHHHHHHHHhch
Q 022805 246 PIPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 246 ~i~nLyl~G~~~~-------pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
=+||||.||=.+. +|+=+-|-++||+.+|+.|+.+
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 4999999996553 3332335667999999999864
No 137
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.69 E-value=64 Score=31.02 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCceeEEEeCCHHHHHHHh
Q 022805 176 SAEYKKLKAERSEVIWRAVERALG-PGFSRDKCDVKLVGTPLTHQRFL 222 (292)
Q Consensus 176 ~~~Y~~~K~~~a~~ll~~le~~~~-P~l~r~~I~~~~~~TPlT~~~y~ 222 (292)
.|+|++..+.-+.+-++.|.++.. ||. +.--+.-.+-||+-+++|.
T Consensus 319 EeEYeeQaeveT~kaLaeLReycnkpd~-~~Wkvvgrlrsp~rfA~F~ 365 (452)
T KOG3817|consen 319 EEEYEEQAEVETSKALAELREYCNKPDC-KQWKVVGRLRSPLRFASFA 365 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC-chhhhhhhccCHHHHHHHh
Confidence 588999988888899999999977 999 8888888899999999996
No 138
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.20 E-value=41 Score=32.72 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..-.-..-+..-|..+|+.|++.
T Consensus 297 ~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred CccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCC
Confidence 36889999999999852123445667888999998864
No 139
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=34.50 E-value=39 Score=32.38 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.9
Q ss_pred CCcEEEeCCCc-----CCCCcchhhhhhHHHHHHHHhc
Q 022805 247 IPQLYCCGDST-----FPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 247 i~nLyl~G~~~-----~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
-+|+.++||.+ .-|.||.-++.||.+||+.|.+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~ 306 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 306 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 47899999965 2377999999999999999974
No 140
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=34.02 E-value=27 Score=31.58 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCCCCCcEEEeCCCcC-------CCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-------pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+.-.||||.+|=.+. +|+=+-|-++||+.||+.|+++
T Consensus 214 T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 214 TGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred cccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHH
Confidence 3455899999997653 3332335668999999999764
No 141
>PF15200 KRTDAP: Keratinocyte differentiation-associated
Probab=33.76 E-value=60 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.0
Q ss_pred ecccChhhH------HHHHHHhcChhHHHHHHHHHHHHHH
Q 022805 10 LSRIGPTEF------YKDLEKYASKNAVQDWKKLLDAILP 43 (292)
Q Consensus 10 ~~~~g~~~f------~~~l~~~f~p~~~~~~~~~~~~~~~ 43 (292)
.++.|.|+| ++.|+.-|-|+|-=+|.++.+.+++
T Consensus 14 NY~~~~e~~~~qFLNvdklrsafk~~eFlNWHalfe~iK~ 53 (77)
T PF15200_consen 14 NYAAGPEAFNTQFLNVDKLRSAFKSEEFLNWHALFEAIKR 53 (77)
T ss_pred ccccccccccchhccHHHHHHhhChHhhhhHHHHHHHHHH
Confidence 345666665 7889999999999999999999986
No 142
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=33.57 E-value=49 Score=32.37 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.+-.=.+-+.-.|.++|+.|++.
T Consensus 291 ~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 291 GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 46899999999999965222223445788888888764
No 143
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.07 E-value=43 Score=34.49 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.4
Q ss_pred CCCCCCcEEEeCCCcCCCCc-chhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIG-VPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~G-v~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.. .. +.-++..|+.||..|..
T Consensus 596 ~~Ts~~gVfA~GD~~~g-~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG-ADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred cccCCCCEEEcCCCCCC-chHHHHHHHHHHHHHHHHHH
Confidence 35889999999999863 44 45677789999998864
No 144
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.76 E-value=47 Score=32.60 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+..-.=..-+...|+.+|+.|++.
T Consensus 301 ~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred eecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 46999999999999842122334556788899988864
No 145
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=32.64 E-value=45 Score=36.42 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhchh
Q 022805 244 STPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
+|.++|+|.+||.+. | ..+.-+...|+.+|..|++..
T Consensus 804 qTs~pgVFAaGD~a~Gp-~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 804 ETSLTNVYMIGDVQRGP-STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred ccCCCCEEEEeccccCc-hHHHHHHHHHHHHHHHHhhhc
Confidence 688999999999984 4 356677889999999997643
No 146
>PRK07804 L-aspartate oxidase; Provisional
Probab=32.46 E-value=32 Score=34.61 Aligned_cols=36 Identities=11% Similarity=-0.049 Sum_probs=22.0
Q ss_pred hhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHhhc
Q 022805 15 PTEFYKDLEKYA-SKNAVQDWKKLLDAILPLSATATA 50 (292)
Q Consensus 15 ~~~f~~~l~~~f-~p~~~~~~~~~~~~~~~~~~~~~~ 50 (292)
.|.|.+.+.+.. |-...+-++.|++...+.-+++..
T Consensus 72 ~e~~~~d~~~~g~g~~d~~~v~~~~~~s~~~i~~L~~ 108 (541)
T PRK07804 72 PEAHVADTLVAGAGLCDPDAVRSLVAEGPRAVRELVA 108 (541)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555554433 344556788888777776666554
No 147
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=32.34 E-value=56 Score=32.95 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=27.3
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il 278 (292)
.+|.++|+|.+||.+..+ ..+..++..|..+|..|.
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 368899999999987432 245567778888888874
No 148
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=31.11 E-value=51 Score=34.06 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
.+|.++|+|.+||.+....-+.-++..|+.+|..|.
T Consensus 462 ~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 358899999999998532224556678888888874
No 149
>PRK07846 mycothione reductase; Reviewed
Probab=30.96 E-value=58 Score=31.87 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.+-.=...+..-|.++|+.|++.
T Consensus 288 ~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 288 QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 46899999999999965222223445677888888754
No 150
>PLN02661 Putative thiazole synthesis
Probab=30.65 E-value=46 Score=31.90 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCc-------CCCCcchhhhhhHHHHHHHHhchhc
Q 022805 246 PIPQLYCCGDST-------FPGIGVPAVAASGAIVANSLVSVSQ 282 (292)
Q Consensus 246 ~i~nLyl~G~~~-------~pG~Gv~gv~~SG~~~A~~il~~~~ 282 (292)
=+||||.||=.+ .+|+=+-|-++||+.+|+.|+++-+
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 499999999655 3443334566899999999987654
No 151
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=29.49 E-value=51 Score=32.42 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCCcEEEeCCCc-----CCCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDST-----FPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~-----~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
++.-+|+.++||.+ .-|.||.-++.||.++|+.|.+
T Consensus 305 ~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~ 345 (450)
T PLN00093 305 RRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 345 (450)
T ss_pred ceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 34456899999965 3478999999999999999974
No 152
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.79 E-value=48 Score=35.94 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+..+.=+.-++..|+.||..|..
T Consensus 588 ~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 588 QRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred CccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999996422366677799999999853
No 153
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=28.68 E-value=38 Score=32.64 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCCCcEEEeCCCcCC---CCc--chhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTFP---GIG--VPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~p---G~G--v~gv~~SG~~~A~~il~ 279 (292)
..+||||+||--.-- =+| +.-|-.||++|+..+..
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~ 373 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHS 373 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999954432 123 44588899999987753
No 154
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=28.48 E-value=34 Score=34.23 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEeCCCcCCCCcchh-----------hhhhHHHHHHHHhch
Q 022805 242 GHSTPIPQLYCCGDSTFPGIGVPA-----------VAASGAIVANSLVSV 280 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG~Gv~g-----------v~~SG~~~A~~il~~ 280 (292)
..+|.|+|||-+|-.+.- |+.| +++.|..+|+.|...
T Consensus 349 ~GrTsi~gLYAiGEvA~T--GlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 349 NGRTSIPGLYAIGEVACT--GLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred CCcccCcccEEeeeeccc--ccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 458999999999999865 5665 355677777777653
No 155
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=28.43 E-value=41 Score=37.31 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCCCcEEEeCCCcC-------C-CCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF-------P-GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-------p-G~Gv~gv~~SG~~~A~~il~ 279 (292)
..||||||-+|..+. + |.++.-++..|++|++.+.+
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~ 900 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAAT 900 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 368999999998641 1 22344467788888777754
No 156
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=28.23 E-value=1.3e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 022805 176 SAEYKKLKAERSEVIWRAVERALGPGFSRDK 206 (292)
Q Consensus 176 ~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~ 206 (292)
+++|-..-+++.++|.+.|++.+ |++ +-+
T Consensus 45 G~DYH~vlk~~L~~l~~~i~~~~-~~~-~~r 73 (78)
T PF08331_consen 45 GRDYHKVLKKKLEQLAEWIRELG-PDF-EYR 73 (78)
T ss_pred cCChHHHHHHHHHHHHHHHHHHC-CCC-CeE
Confidence 57898877778899999999999 987 533
No 157
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=28.03 E-value=63 Score=31.53 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+..-.=..-+..-|.++|..|.+.+
T Consensus 293 ~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~ 331 (458)
T PRK06912 293 MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGED 331 (458)
T ss_pred eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 358899999999998421123345567888898887643
No 158
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=27.78 E-value=58 Score=32.82 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il 278 (292)
..|.++|+|.+||.+....-+..+...|+.+|..|.
T Consensus 405 ~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 405 MMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred ccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 358899999999998622345556678899988873
No 159
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=27.72 E-value=1.8e+02 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=29.3
Q ss_pred CCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 246 PIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 246 ~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
..+|||++...- |+|+..+.+.|.+.|+.|++..
T Consensus 601 ~~~gl~v~~G~g--s~Gl~~ap~~a~~lA~li~g~~ 634 (662)
T PRK01747 601 RLPGLYVAGALG--SRGLCSAPLGAELLASQIEGEP 634 (662)
T ss_pred CCCCeEEEeccc--ccHHHHHHHHHHHHHHHHhCCC
Confidence 478999988775 6899999999999999998754
No 160
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.78 E-value=62 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.6
Q ss_pred CCCCCCCcEEEeCCCc
Q 022805 242 GHSTPIPQLYCCGDST 257 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~ 257 (292)
..+|.|||||-+|..+
T Consensus 414 ~~~T~i~GLyAaGE~~ 429 (640)
T PRK07573 414 NLMSTIPGLFVIGEAN 429 (640)
T ss_pred CCccccCCEEECcccc
Confidence 3479999999999975
No 161
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=59 Score=30.34 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHh
Q 022805 242 GHSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLV 278 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il 278 (292)
..+|.|||+|-+||.+..-. =+..++-.|.+||..+.
T Consensus 260 ~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 35799999999999996522 14444556666666553
No 162
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=26.28 E-value=69 Score=32.82 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCCCcEEEeCCCcCCC-Cc-chhhhhhHHHHHHHH
Q 022805 244 STPIPQLYCCGDSTFPG-IG-VPAVAASGAIVANSL 277 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~G-v~gv~~SG~~~A~~i 277 (292)
+|.|+|||-||+.+..| ++ ..+++.-|.++++.+
T Consensus 392 ~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~ 427 (608)
T PRK06854 392 MTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAA 427 (608)
T ss_pred ccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHH
Confidence 68999999999986422 22 234444555555544
No 163
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=26.25 E-value=1.2e+02 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=13.2
Q ss_pred hHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 022805 17 EFYKDLEKYASKNAVQDWKKLLDAILPL 44 (292)
Q Consensus 17 ~f~~~l~~~f~p~~~~~~~~~~~~~~~~ 44 (292)
+|.++|.+.| -++..-+++....+..+
T Consensus 24 kykeeL~~p~-~EA~~f~~~ie~qL~~L 50 (52)
T PF03791_consen 24 KYKEELQRPF-QEAMEFCREIEQQLSSL 50 (52)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3555555555 44444444444444443
No 164
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=26.16 E-value=80 Score=30.97 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCc------CCC--CcchhhhhhHHHHHHHHh
Q 022805 246 PIPQLYCCGDST------FPG--IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 246 ~i~nLyl~G~~~------~pG--~Gv~gv~~SG~~~A~~il 278 (292)
.++|||.+|.-. .-| .||. +.+|..||+.|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVa--i~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVA--VSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhH--HHHHHHHHHhhC
Confidence 499999999654 222 3444 468888988874
No 165
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=25.78 E-value=60 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCcEEEeCCCcC-----CCCcchhhhhhHHHHHHHH
Q 022805 247 IPQLYCCGDSTF-----PGIGVPAVAASGAIVANSL 277 (292)
Q Consensus 247 i~nLyl~G~~~~-----pG~Gv~gv~~SG~~~A~~i 277 (292)
-+|+++.||.++ .|.|+..++.+|..+|+.|
T Consensus 260 ~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 260 RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 478999999764 3679999999999988754
No 166
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=25.40 E-value=71 Score=30.30 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.5
Q ss_pred CCcEEEeCCCcC-----CCCcchhhhhhHHHHHHHHhc
Q 022805 247 IPQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 247 i~nLyl~G~~~~-----pG~Gv~gv~~SG~~~A~~il~ 279 (292)
-.|++++||.++ .|.|+..++.||.++|+.|..
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~ 300 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAE 300 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHH
Confidence 467999999763 367999999999999999864
No 167
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.88 E-value=82 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.1
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.++|+|.+||.+..-.-...+...|..+|+.|++.
T Consensus 307 ~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 307 QTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 6889999999999842122344566788888888764
No 168
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=24.73 E-value=81 Score=31.23 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.6
Q ss_pred CCCCCCcEEEeCCCcCCCCc-chhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIG-VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~G-v~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..+.. .+-+...|+.+|+.|++.
T Consensus 306 ~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 46899999999998842222 334556788999998863
No 169
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=24.19 E-value=92 Score=30.84 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchh-hhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPA-VAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~g-v~~SG~~~A~~il~ 279 (292)
.+|.+||+|-+||.+.. ..+.- +..-|+++|+.|++
T Consensus 298 ~~Tnvp~IyA~GDV~~~-~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGG-PMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCC-cccHhHHHHHHHHHHHHHhC
Confidence 35789999999999743 23433 55678999999996
No 170
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=23.59 E-value=1e+02 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHh
Q 022805 26 ASKNAVQDWKKLLDAILPLSATA 48 (292)
Q Consensus 26 f~p~~~~~~~~~~~~~~~~~~~~ 48 (292)
. |++++++++.++.|+.+.++-
T Consensus 55 ~-PeaK~~ik~li~~Ik~lNe~~ 76 (82)
T PF10835_consen 55 Y-PEAKEEIKELIEEIKQLNEAH 76 (82)
T ss_pred C-chHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999998763
No 171
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=23.49 E-value=93 Score=30.10 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=27.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|-+||.+..-.=.+-+...|+.+++.|++.
T Consensus 280 ~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 280 LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 46899999999999853122333455677888888763
No 172
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=23.45 E-value=68 Score=31.25 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCCCcEEEeCC---CcCCCCc--chhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGD---STFPGIG--VPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~---~~~pG~G--v~gv~~SG~~~A~~il~ 279 (292)
..+|||||||- .+-+=+| +.-+..||+.|+..+..
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~ 405 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAA 405 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhh
Confidence 46999999994 4433345 44578899998887754
No 173
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=21.91 E-value=55 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=13.3
Q ss_pred ccChhhHHHHHHHhcChhHHH
Q 022805 12 RIGPTEFYKDLEKYASKNAVQ 32 (292)
Q Consensus 12 ~~g~~~f~~~l~~~f~p~~~~ 32 (292)
..|+++|++.|..+| |+-.+
T Consensus 64 ~~~f~aFLeSLE~~y-P~l~~ 83 (86)
T cd08809 64 LKGYEAFLESLELYY-PQLYK 83 (86)
T ss_pred chHHHHHHHHHHHHH-HHHHh
Confidence 456777777777777 65443
No 174
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=21.73 E-value=1.4e+02 Score=30.19 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCC-----CCCCCceeEEEeCCHHHHHHHh
Q 022805 186 RSEVIWRAVERALGP-----GFSRDKCDVKLVGTPLTHQRFL 222 (292)
Q Consensus 186 ~a~~ll~~le~~~~P-----~l~r~~I~~~~~~TPlT~~~y~ 222 (292)
..+.+|+.+|+.. + ++ |.+|+|.++.+|.+++|+-
T Consensus 346 Av~~~LdafE~~~-~~~~~~~~-r~rieH~~~v~~~~i~R~~ 385 (535)
T COG1574 346 AVDAALDAFEKAR-KKNGLKGL-RHRIEHAELVSPDQIERFA 385 (535)
T ss_pred HHHHHHHHHHHHh-hhcCCccC-CceeeeeeecCHhHHHHHH
Confidence 4567899999886 4 78 8999999999999999996
No 175
>cd08807 CARD_CARD10_CARMA3 Caspase activation and recruitment domain of CARD10-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD10, also known as CARMA3 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 3) or BIMP1. The CARMA3-BCL10-MALT1 signalosome plays a role in the GPCR-induced NF-kB activation. CARMA3 is more widely expressed than CARMA1, which is found only in hematopoietic cells. In endothelial and smooth muscle cells, CARMA3-mediated NF-kB activation induces pro-inflammatory signals within the vasculature and is a key factor in atherogenesis. In bronchial epithelial cells, CARMA3-mediated NF-kB signaling is important for the development of allergic airway inflammation. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains fo
Probab=21.24 E-value=57 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=12.3
Q ss_pred ccChhhHHHHHHHhcChh
Q 022805 12 RIGPTEFYKDLEKYASKN 29 (292)
Q Consensus 12 ~~g~~~f~~~l~~~f~p~ 29 (292)
..|+++|++.|..+| |+
T Consensus 64 ~~gf~aFLeSLE~~y-p~ 80 (86)
T cd08807 64 KRGYEAFLEALEFYY-PE 80 (86)
T ss_pred chHHHHHHHHHHhhh-HH
Confidence 456777888887777 65
No 176
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=21.24 E-value=61 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCCcEEEeCCCcCC---CCc--chhhhhhHHHHHH
Q 022805 245 TPIPQLYCCGDSTFP---GIG--VPAVAASGAIVAN 275 (292)
Q Consensus 245 T~i~nLyl~G~~~~p---G~G--v~gv~~SG~~~A~ 275 (292)
..+||||+||--.-- =+| +..|..||++|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 469999999976543 123 3457778888875
No 177
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=20.65 E-value=1.1e+02 Score=29.16 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCCCCcEEEeCCCcCCC--Ccc-------hhhhhhHHHHHHHHhchh
Q 022805 242 GHSTPIPQLYCCGDSTFPG--IGV-------PAVAASGAIVANSLVSVS 281 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~pG--~Gv-------~gv~~SG~~~A~~il~~~ 281 (292)
..+|.++|+|.+||.+... .|- .-+...|.++|+.|++..
T Consensus 262 ~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 262 ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 3468899999999998421 231 346679999999998653
No 178
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.51 E-value=18 Score=34.60 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=23.2
Q ss_pred hhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHhhcC
Q 022805 15 PTEFYKDLEKYA-SKNAVQDWKKLLDAILPLSATATAL 51 (292)
Q Consensus 15 ~~~f~~~l~~~f-~p~~~~~~~~~~~~~~~~~~~~~~~ 51 (292)
.+.|.+.+.+.. +-...+-++.|++...+..+++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (417)
T PF00890_consen 62 PEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEEL 99 (417)
T ss_dssp HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceeeecccccccccchhhhhhhcccceehhhhhh
Confidence 556777776665 2235566777777777777776654
No 179
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=20.36 E-value=1e+02 Score=31.46 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHhhcC
Q 022805 14 GPTEFYKDLEKYA-SKNAVQDWKKLLDAILPLSATATAL 51 (292)
Q Consensus 14 g~~~f~~~l~~~f-~p~~~~~~~~~~~~~~~~~~~~~~~ 51 (292)
.+|.|...+.+-. +....+.++.|++..-+.-..+..+
T Consensus 66 s~e~~~~dtvkg~d~l~dqd~i~~~~~~ap~~v~~Le~~ 104 (562)
T COG1053 66 SPELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKW 104 (562)
T ss_pred CHHHHHHHHHhccCCcCCHHHHHHHHHhhHHHHHHHHHh
Confidence 4666665555443 4556788999998887777776644
No 180
>PTZ00052 thioredoxin reductase; Provisional
Probab=20.30 E-value=1.1e+02 Score=30.36 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=26.9
Q ss_pred CCCCCcEEEeCCCcCCCCc-chhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIG-VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~G-v~gv~~SG~~~A~~il~~ 280 (292)
+|.+||+|.+||.+..... .+-+..-|..+|+.|++.
T Consensus 304 ~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 6889999999998741122 344556788899988764
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.28 E-value=1.2e+02 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=24.9
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+.-..=..-+...|.++++.+.+.
T Consensus 279 ~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 279 CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 46889999999999831111233344566777777654
Done!